Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032980 | Msa0816220 | 0.809241 | 2.085831e-50 | -8.615850e-47 |
| Msa0091350 | Msa0816220 | 0.809191 | 2.137688e-50 | -8.615850e-47 |
| Msa0647440 | Msa0816220 | 0.800306 | 1.533560e-48 | -8.615850e-47 |
| Msa0720280 | Msa0816220 | 0.805937 | 1.048706e-49 | -8.615850e-47 |
| Msa0803140 | Msa0816220 | 0.814223 | 1.718654e-51 | -8.615850e-47 |
| Msa0816220 | Msa0816230 | 0.804179 | 2.445692e-49 | -8.615850e-47 |
| Msa0816220 | Msa0909760 | 0.801146 | 1.033147e-48 | -8.615850e-47 |
| Msa0816220 | Msa1008680 | 0.801366 | 9.314983e-49 | -8.615850e-47 |
| Msa0816220 | Msa1339230 | 0.813518 | 2.457632e-51 | -8.615850e-47 |
| Msa0127340 | Msa0816220 | 0.812606 | 3.895790e-51 | -8.615850e-47 |
| Msa0433760 | Msa0816220 | 0.809981 | 1.445943e-50 | -8.615850e-47 |
| Msa0477630 | Msa0816220 | 0.808604 | 2.854077e-50 | -8.615850e-47 |
| Msa0521680 | Msa0816220 | 0.801475 | 8.849745e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAGGATGCTTGTGTAAT+TGG | 0.245035 | 5_3:-50447711 | Msa0816220:intron |
| GATGTTTCACCGTTGGGATT+TGG | 0.338668 | 5_3:-50448820 | Msa0816220:intron |
| GTGTAATTGGCTTGCGGAAT+TGG | 0.355987 | 5_3:-50447698 | Msa0816220:CDS |
| TGTTATGTATGAGTCTCCTC+TGG | 0.359378 | 5_3:-50448109 | Msa0816220:CDS |
| TTCATTCCCTTCACAGGAAC+TGG | 0.367263 | 5_3:-50448154 | Msa0816220:CDS |
| CCCATAGATGTTTCACCGTT+GGG | 0.392807 | 5_3:-50448826 | None:intergenic |
| CAATGATCTGGTGGTTGGCT+TGG | 0.407715 | 5_3:+50448130 | None:intergenic |
| AGCTCAACTTCTTCTGCCTT+AGG | 0.430134 | 5_3:-50447654 | Msa0816220:CDS |
| TATTATTTCATTCCCTTCAC+AGG | 0.446689 | 5_3:-50448160 | Msa0816220:CDS |
| TCCCATAGATGTTTCACCGT+TGG | 0.480029 | 5_3:-50448827 | None:intergenic |
| AATGATCTGGTGGTTGGCTT+GGG | 0.481906 | 5_3:+50448131 | None:intergenic |
| GTCTCCTCTGGGACGGATGA+AGG | 0.496381 | 5_3:-50448097 | Msa0816220:intron |
| CTCTACATTGAGAGGACCTA+AGG | 0.512136 | 5_3:+50447638 | None:intergenic |
| ACTCATACATAACAATGATC+TGG | 0.512683 | 5_3:+50448118 | None:intergenic |
| GCTTGGGCCAGTTCCTGTGA+AGG | 0.517691 | 5_3:+50448147 | None:intergenic |
| GAAGGGAATGAAATAATATC+CGG | 0.520786 | 5_3:+50448165 | None:intergenic |
| CATAACAATGATCTGGTGGT+TGG | 0.544131 | 5_3:+50448125 | None:intergenic |
| CTTGGGCCAGTTCCTGTGAA+GGG | 0.549263 | 5_3:+50448148 | None:intergenic |
| AATCATATCTCTACATTGAG+AGG | 0.566266 | 5_3:+50447630 | None:intergenic |
| GTTATGTATGAGTCTCCTCT+GGG | 0.595908 | 5_3:-50448108 | Msa0816220:CDS |
| TGTATGAGTCTCCTCTGGGA+CGG | 0.627018 | 5_3:-50448104 | Msa0816220:CDS |
| CATAATAAACCAAATCCCAA+CGG | 0.638587 | 5_3:+50448811 | None:intergenic |
| CATACATAACAATGATCTGG+TGG | 0.653217 | 5_3:+50448121 | None:intergenic |
| ATGCTTGTGTAATTGGCTTG+CGG | 0.653732 | 5_3:-50447704 | Msa0816220:CDS |
| TTTACCTTCATCCGTCCCAG+AGG | 0.686692 | 5_3:+50448093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAGTTTAATTTTAATTTGT+TGG | + | chr5_3:50447886-50447905 | None:intergenic | 15.0% |
| !!! | ATTAATTCACATCTAAAATA+AGG | + | chr5_3:50448106-50448125 | None:intergenic | 15.0% |
| !!! | TTATTTTAGATGTGAATTAA+TGG | - | chr5_3:50448105-50448124 | Msa0816220:CDS | 15.0% |
| !!! | TAATTTTATAGGAACAAAAA+AGG | - | chr5_3:50448204-50448223 | Msa0816220:intron | 15.0% |
| !!! | TTTTATTTTTTAATTGGATC+AGG | - | chr5_3:50448724-50448743 | Msa0816220:intron | 15.0% |
| !!! | TCAGTTTAATTTTAATTTGT+TGG | + | chr5_3:50447886-50447905 | None:intergenic | 15.0% |
| !!! | ATTAATTCACATCTAAAATA+AGG | + | chr5_3:50448106-50448125 | None:intergenic | 15.0% |
| !!! | TTATTTTAGATGTGAATTAA+TGG | - | chr5_3:50448105-50448124 | Msa0816220:CDS | 15.0% |
| !!! | TAATTTTATAGGAACAAAAA+AGG | - | chr5_3:50448204-50448223 | Msa0816220:intron | 15.0% |
| !!! | TTTTATTTTTTAATTGGATC+AGG | - | chr5_3:50448724-50448743 | Msa0816220:intron | 15.0% |
| !! | ATTTATCTTACAAAAGCAAA+TGG | + | chr5_3:50447735-50447754 | None:intergenic | 20.0% |
| !!! | TTAATTTTCTAGCTGTAAAT+TGG | - | chr5_3:50447837-50447856 | Msa0816220:intron | 20.0% |
| !! | ATTGAAAAAGAATCTTATCT+AGG | + | chr5_3:50447938-50447957 | None:intergenic | 20.0% |
| !!! | TCTAAAATAAGGTAATGAAA+AGG | + | chr5_3:50448095-50448114 | None:intergenic | 20.0% |
| !!! | TTTGGAGAATCTAATTTTAT+AGG | - | chr5_3:50448193-50448212 | Msa0816220:intron | 20.0% |
| !!! | AGGCGTTTTTATTTTTTAAT+TGG | - | chr5_3:50448718-50448737 | Msa0816220:intron | 20.0% |
| !! | ATTTATCTTACAAAAGCAAA+TGG | + | chr5_3:50447735-50447754 | None:intergenic | 20.0% |
| !!! | TTAATTTTCTAGCTGTAAAT+TGG | - | chr5_3:50447837-50447856 | Msa0816220:intron | 20.0% |
| !! | ATTGAAAAAGAATCTTATCT+AGG | + | chr5_3:50447938-50447957 | None:intergenic | 20.0% |
| !!! | TCTAAAATAAGGTAATGAAA+AGG | + | chr5_3:50448095-50448114 | None:intergenic | 20.0% |
| !!! | TTTGGAGAATCTAATTTTAT+AGG | - | chr5_3:50448193-50448212 | Msa0816220:intron | 20.0% |
| !!! | AGGCGTTTTTATTTTTTAAT+TGG | - | chr5_3:50448718-50448737 | Msa0816220:intron | 20.0% |
| ! | TGCACTAGATTAAATTAATC+TGG | - | chr5_3:50447957-50447976 | Msa0816220:intron | 25.0% |
| ! | TGAATTAATGGTTAACATCT+TGG | - | chr5_3:50448117-50448136 | Msa0816220:CDS | 25.0% |
| ! | AAGGGTAATGTAAAAGAATT+GGG | + | chr5_3:50448168-50448187 | None:intergenic | 25.0% |
| ! | AAAGGGTAATGTAAAAGAAT+TGG | + | chr5_3:50448169-50448188 | None:intergenic | 25.0% |
| !! | AATTCTTTTACATTACCCTT+TGG | - | chr5_3:50448168-50448187 | Msa0816220:CDS | 25.0% |
| !! | ATTCTTTTACATTACCCTTT+GGG | - | chr5_3:50448169-50448188 | Msa0816220:CDS | 25.0% |
| ! | TATGAACTAACTCTAAACTA+CGG | + | chr5_3:50448413-50448432 | None:intergenic | 25.0% |
| ! | TCTGATTATAACAAACCATA+GGG | - | chr5_3:50448589-50448608 | Msa0816220:intron | 25.0% |
| ! | TGCACTAGATTAAATTAATC+TGG | - | chr5_3:50447957-50447976 | Msa0816220:intron | 25.0% |
| ! | TGAATTAATGGTTAACATCT+TGG | - | chr5_3:50448117-50448136 | Msa0816220:CDS | 25.0% |
| ! | AAGGGTAATGTAAAAGAATT+GGG | + | chr5_3:50448168-50448187 | None:intergenic | 25.0% |
| ! | AAAGGGTAATGTAAAAGAAT+TGG | + | chr5_3:50448169-50448188 | None:intergenic | 25.0% |
| !! | AATTCTTTTACATTACCCTT+TGG | - | chr5_3:50448168-50448187 | Msa0816220:CDS | 25.0% |
| !! | ATTCTTTTACATTACCCTTT+GGG | - | chr5_3:50448169-50448188 | Msa0816220:CDS | 25.0% |
| ! | TATGAACTAACTCTAAACTA+CGG | + | chr5_3:50448413-50448432 | None:intergenic | 25.0% |
| ! | TCTGATTATAACAAACCATA+GGG | - | chr5_3:50448589-50448608 | Msa0816220:intron | 25.0% |
| CATAATAAACCAAATCCCAA+CGG | + | chr5_3:50447643-50447662 | None:intergenic | 30.0% | |
| CTGAATTCAGAACACTTAAT+AGG | + | chr5_3:50447698-50447717 | None:intergenic | 30.0% | |
| CTGGCAAAATTCAAATAGAA+TGG | - | chr5_3:50447976-50447995 | Msa0816220:intron | 30.0% | |
| AATGGATGCTAAAATAGTCT+TGG | - | chr5_3:50447994-50448013 | Msa0816220:intron | 30.0% | |
| AACATTCAGAATTCTAGTCT+TGG | - | chr5_3:50448022-50448041 | Msa0816220:intron | 30.0% | |
| GAAGGGAATGAAATAATATC+CGG | + | chr5_3:50448289-50448308 | None:intergenic | 30.0% | |
| TATTATTTCATTCCCTTCAC+AGG | - | chr5_3:50448291-50448310 | Msa0816220:intron | 30.0% | |
| ACTCATACATAACAATGATC+TGG | + | chr5_3:50448336-50448355 | None:intergenic | 30.0% | |
| AGTTAGTTCATAACAAACCA+CGG | - | chr5_3:50448421-50448440 | Msa0816220:intron | 30.0% | |
| TATAATCAGACCCTAAACTA+CGG | + | chr5_3:50448579-50448598 | None:intergenic | 30.0% | |
| GTCTGATTATAACAAACCAT+AGG | - | chr5_3:50448588-50448607 | Msa0816220:intron | 30.0% | |
| CTGATTATAACAAACCATAG+GGG | - | chr5_3:50448590-50448609 | Msa0816220:intron | 30.0% | |
| AAAATAAAAACGCCTAACTG+AGG | + | chr5_3:50448713-50448732 | None:intergenic | 30.0% | |
| CATAATAAACCAAATCCCAA+CGG | + | chr5_3:50447643-50447662 | None:intergenic | 30.0% | |
| CTGAATTCAGAACACTTAAT+AGG | + | chr5_3:50447698-50447717 | None:intergenic | 30.0% | |
| CTGGCAAAATTCAAATAGAA+TGG | - | chr5_3:50447976-50447995 | Msa0816220:intron | 30.0% | |
| AATGGATGCTAAAATAGTCT+TGG | - | chr5_3:50447994-50448013 | Msa0816220:intron | 30.0% | |
| AACATTCAGAATTCTAGTCT+TGG | - | chr5_3:50448022-50448041 | Msa0816220:intron | 30.0% | |
| GAAGGGAATGAAATAATATC+CGG | + | chr5_3:50448289-50448308 | None:intergenic | 30.0% | |
| TATTATTTCATTCCCTTCAC+AGG | - | chr5_3:50448291-50448310 | Msa0816220:intron | 30.0% | |
| ACTCATACATAACAATGATC+TGG | + | chr5_3:50448336-50448355 | None:intergenic | 30.0% | |
| AGTTAGTTCATAACAAACCA+CGG | - | chr5_3:50448421-50448440 | Msa0816220:intron | 30.0% | |
| TATAATCAGACCCTAAACTA+CGG | + | chr5_3:50448579-50448598 | None:intergenic | 30.0% | |
| GTCTGATTATAACAAACCAT+AGG | - | chr5_3:50448588-50448607 | Msa0816220:intron | 30.0% | |
| CTGATTATAACAAACCATAG+GGG | - | chr5_3:50448590-50448609 | Msa0816220:intron | 30.0% | |
| AAAATAAAAACGCCTAACTG+AGG | + | chr5_3:50448713-50448732 | None:intergenic | 30.0% | |
| TTCAGAACACTTAATAGGCT+AGG | + | chr5_3:50447693-50447712 | None:intergenic | 35.0% | |
| GGTAATGTAAAAGAATTGGG+TGG | + | chr5_3:50448165-50448184 | None:intergenic | 35.0% | |
| CATACATAACAATGATCTGG+TGG | + | chr5_3:50448333-50448352 | None:intergenic | 35.0% | |
| ATGAAGGTAAATGTAGATGC+TGG | - | chr5_3:50448370-50448389 | Msa0816220:intron | 35.0% | |
| GTTAGTTCATAACAAACCAC+GGG | - | chr5_3:50448422-50448441 | Msa0816220:intron | 35.0% | |
| TTAGTTCATAACAAACCACG+GGG | - | chr5_3:50448423-50448442 | Msa0816220:intron | 35.0% | |
| TGATTTATGCAGCAACAAAG+AGG | - | chr5_3:50448452-50448471 | Msa0816220:intron | 35.0% | |
| TGTCAAAACATCAACCTCTA+GGG | + | chr5_3:50448482-50448501 | None:intergenic | 35.0% | |
| ATGTCAAAACATCAACCTCT+AGG | + | chr5_3:50448483-50448502 | None:intergenic | 35.0% | |
| !!! | GGTTGATGTTTTGACATTTG+TGG | - | chr5_3:50448486-50448505 | Msa0816220:intron | 35.0% |
| ATGAAGGAAAATGTAGATGC+TGG | - | chr5_3:50448537-50448556 | Msa0816220:intron | 35.0% | |
| AAGTGATTTATGCAGCAACA+AGG | - | chr5_3:50448449-50448468 | Msa0816220:intron | 35.0% | |
| !!! | TGTTTTGACAGCTGAATTGT+TGG | - | chr5_3:50448665-50448684 | Msa0816220:intron | 35.0% |
| TTCAGAACACTTAATAGGCT+AGG | + | chr5_3:50447693-50447712 | None:intergenic | 35.0% | |
| GGTAATGTAAAAGAATTGGG+TGG | + | chr5_3:50448165-50448184 | None:intergenic | 35.0% | |
| CATACATAACAATGATCTGG+TGG | + | chr5_3:50448333-50448352 | None:intergenic | 35.0% | |
| ATGAAGGTAAATGTAGATGC+TGG | - | chr5_3:50448370-50448389 | Msa0816220:intron | 35.0% | |
| GTTAGTTCATAACAAACCAC+GGG | - | chr5_3:50448422-50448441 | Msa0816220:intron | 35.0% | |
| TTAGTTCATAACAAACCACG+GGG | - | chr5_3:50448423-50448442 | Msa0816220:intron | 35.0% | |
| TGATTTATGCAGCAACAAAG+AGG | - | chr5_3:50448452-50448471 | Msa0816220:intron | 35.0% | |
| TGTCAAAACATCAACCTCTA+GGG | + | chr5_3:50448482-50448501 | None:intergenic | 35.0% | |
| ATGTCAAAACATCAACCTCT+AGG | + | chr5_3:50448483-50448502 | None:intergenic | 35.0% | |
| !!! | GGTTGATGTTTTGACATTTG+TGG | - | chr5_3:50448486-50448505 | Msa0816220:intron | 35.0% |
| ATGAAGGAAAATGTAGATGC+TGG | - | chr5_3:50448537-50448556 | Msa0816220:intron | 35.0% | |
| AAGTGATTTATGCAGCAACA+AGG | - | chr5_3:50448449-50448468 | Msa0816220:intron | 35.0% | |
| !!! | TGTTTTGACAGCTGAATTGT+TGG | - | chr5_3:50448665-50448684 | Msa0816220:intron | 35.0% |
| AACATCTTGGCTGTCTTGTA+AGG | - | chr5_3:50448130-50448149 | Msa0816220:CDS | 40.0% | |
| ACATCTTGGCTGTCTTGTAA+GGG | - | chr5_3:50448131-50448150 | Msa0816220:CDS | 40.0% | |
| TTACATTACCCTTTGGGCTT+TGG | - | chr5_3:50448175-50448194 | Msa0816220:CDS | 40.0% | |
| TAGATTCTCCAAAGCCCAAA+GGG | + | chr5_3:50448186-50448205 | None:intergenic | 40.0% | |
| TTAGATTCTCCAAAGCCCAA+AGG | + | chr5_3:50448187-50448206 | None:intergenic | 40.0% | |
| CATAACAATGATCTGGTGGT+TGG | + | chr5_3:50448329-50448348 | None:intergenic | 40.0% | |
| TGTTATGTATGAGTCTCCTC+TGG | - | chr5_3:50448342-50448361 | Msa0816220:intron | 40.0% | |
| GTTATGTATGAGTCTCCTCT+GGG | - | chr5_3:50448343-50448362 | Msa0816220:intron | 40.0% | |
| TTGTAAGAGTCTCCTCCTTT+GGG | - | chr5_3:50448510-50448529 | Msa0816220:intron | 40.0% | |
| ! | TTTTCCTTCATCCATCCCAA+AGG | + | chr5_3:50448528-50448547 | None:intergenic | 40.0% |
| !! | TGTAGATGCTGGATTTGCTA+AGG | - | chr5_3:50448381-50448400 | Msa0816220:intron | 40.0% |
| TATAACAAACCATAGGGGCT+AGG | - | chr5_3:50448595-50448614 | Msa0816220:intron | 40.0% | |
| ATAACAAACCATAGGGGCTA+GGG | - | chr5_3:50448596-50448615 | Msa0816220:intron | 40.0% | |
| TGATTTATGCAGCAACAAGG+AGG | - | chr5_3:50448625-50448644 | Msa0816220:intron | 40.0% | |
| GATCAGGATGCTTGTGTAAT+TGG | - | chr5_3:50448740-50448759 | Msa0816220:intron | 40.0% | |
| !! | ATGCTTGTGTAATTGGCTTG+CGG | - | chr5_3:50448747-50448766 | Msa0816220:intron | 40.0% |
| AACATCTTGGCTGTCTTGTA+AGG | - | chr5_3:50448130-50448149 | Msa0816220:CDS | 40.0% | |
| ACATCTTGGCTGTCTTGTAA+GGG | - | chr5_3:50448131-50448150 | Msa0816220:CDS | 40.0% | |
| TTACATTACCCTTTGGGCTT+TGG | - | chr5_3:50448175-50448194 | Msa0816220:CDS | 40.0% | |
| TAGATTCTCCAAAGCCCAAA+GGG | + | chr5_3:50448186-50448205 | None:intergenic | 40.0% | |
| TTAGATTCTCCAAAGCCCAA+AGG | + | chr5_3:50448187-50448206 | None:intergenic | 40.0% | |
| CATAACAATGATCTGGTGGT+TGG | + | chr5_3:50448329-50448348 | None:intergenic | 40.0% | |
| TGTTATGTATGAGTCTCCTC+TGG | - | chr5_3:50448342-50448361 | Msa0816220:intron | 40.0% | |
| GTTATGTATGAGTCTCCTCT+GGG | - | chr5_3:50448343-50448362 | Msa0816220:intron | 40.0% | |
| TTGTAAGAGTCTCCTCCTTT+GGG | - | chr5_3:50448510-50448529 | Msa0816220:intron | 40.0% | |
| ! | TTTTCCTTCATCCATCCCAA+AGG | + | chr5_3:50448528-50448547 | None:intergenic | 40.0% |
| !! | TGTAGATGCTGGATTTGCTA+AGG | - | chr5_3:50448381-50448400 | Msa0816220:intron | 40.0% |
| TATAACAAACCATAGGGGCT+AGG | - | chr5_3:50448595-50448614 | Msa0816220:intron | 40.0% | |
| ATAACAAACCATAGGGGCTA+GGG | - | chr5_3:50448596-50448615 | Msa0816220:intron | 40.0% | |
| TGATTTATGCAGCAACAAGG+AGG | - | chr5_3:50448625-50448644 | Msa0816220:intron | 40.0% | |
| GATCAGGATGCTTGTGTAAT+TGG | - | chr5_3:50448740-50448759 | Msa0816220:intron | 40.0% | |
| !! | ATGCTTGTGTAATTGGCTTG+CGG | - | chr5_3:50448747-50448766 | Msa0816220:intron | 40.0% |
| TTCATTCCCTTCACAGGAAC+TGG | - | chr5_3:50448297-50448316 | Msa0816220:intron | 45.0% | |
| !! | AATGATCTGGTGGTTGGCTT+GGG | + | chr5_3:50448323-50448342 | None:intergenic | 45.0% |
| CTTGTAAGAGTCTCCTCCTT+TGG | - | chr5_3:50448509-50448528 | Msa0816220:intron | 45.0% | |
| TAAGGAGCAGCCGTAGTTTA+GGG | - | chr5_3:50448566-50448585 | Msa0816220:intron | 45.0% | |
| CTGAATTGTTGGTCATGCAC+TGG | - | chr5_3:50448676-50448695 | Msa0816220:intron | 45.0% | |
| !! | GTGTAATTGGCTTGCGGAAT+TGG | - | chr5_3:50448753-50448772 | Msa0816220:intron | 45.0% |
| AGCTCAACTTCTTCTGCCTT+AGG | - | chr5_3:50448797-50448816 | Msa0816220:intron | 45.0% | |
| CTCTACATTGAGAGGACCTA+AGG | + | chr5_3:50448816-50448835 | None:intergenic | 45.0% | |
| TTCATTCCCTTCACAGGAAC+TGG | - | chr5_3:50448297-50448316 | Msa0816220:intron | 45.0% | |
| !! | AATGATCTGGTGGTTGGCTT+GGG | + | chr5_3:50448323-50448342 | None:intergenic | 45.0% |
| CTTGTAAGAGTCTCCTCCTT+TGG | - | chr5_3:50448509-50448528 | Msa0816220:intron | 45.0% | |
| TAAGGAGCAGCCGTAGTTTA+GGG | - | chr5_3:50448566-50448585 | Msa0816220:intron | 45.0% | |
| CTGAATTGTTGGTCATGCAC+TGG | - | chr5_3:50448676-50448695 | Msa0816220:intron | 45.0% | |
| !! | GTGTAATTGGCTTGCGGAAT+TGG | - | chr5_3:50448753-50448772 | Msa0816220:intron | 45.0% |
| AGCTCAACTTCTTCTGCCTT+AGG | - | chr5_3:50448797-50448816 | Msa0816220:intron | 45.0% | |
| CTCTACATTGAGAGGACCTA+AGG | + | chr5_3:50448816-50448835 | None:intergenic | 45.0% | |
| GCTGTCTTGTAAGGGACTTG+TGG | - | chr5_3:50448139-50448158 | Msa0816220:CDS | 50.0% | |
| ! | CAATGATCTGGTGGTTGGCT+TGG | + | chr5_3:50448324-50448343 | None:intergenic | 50.0% |
| ! | TGTATGAGTCTCCTCTGGGA+CGG | - | chr5_3:50448347-50448366 | Msa0816220:intron | 50.0% |
| TTTACCTTCATCCGTCCCAG+AGG | + | chr5_3:50448361-50448380 | None:intergenic | 50.0% | |
| CATAAATCACTTCTGCCCCG+TGG | + | chr5_3:50448441-50448460 | None:intergenic | 50.0% | |
| ! | AACAAAGAGGTGCACCCTAG+AGG | - | chr5_3:50448465-50448484 | Msa0816220:intron | 50.0% |
| ! | AAGAGTCTCCTCCTTTGGGA+TGG | - | chr5_3:50448514-50448533 | Msa0816220:intron | 50.0% |
| !! | TCCTCCTTTGGGATGGATGA+AGG | - | chr5_3:50448521-50448540 | Msa0816220:intron | 50.0% |
| TCCTTCATCCATCCCAAAGG+AGG | + | chr5_3:50448525-50448544 | None:intergenic | 50.0% | |
| CTAAGGAGCAGCCGTAGTTT+AGG | - | chr5_3:50448565-50448584 | Msa0816220:intron | 50.0% | |
| ! | AACAAGGAGGTGCACTCAAG+AGG | - | chr5_3:50448638-50448657 | Msa0816220:intron | 50.0% |
| GAGCCACTGAAACCTCAGTT+AGG | - | chr5_3:50448698-50448717 | Msa0816220:intron | 50.0% | |
| ACGCCTAACTGAGGTTTCAG+TGG | + | chr5_3:50448704-50448723 | None:intergenic | 50.0% | |
| GCTGTCTTGTAAGGGACTTG+TGG | - | chr5_3:50448139-50448158 | Msa0816220:CDS | 50.0% | |
| ! | CAATGATCTGGTGGTTGGCT+TGG | + | chr5_3:50448324-50448343 | None:intergenic | 50.0% |
| ! | TGTATGAGTCTCCTCTGGGA+CGG | - | chr5_3:50448347-50448366 | Msa0816220:intron | 50.0% |
| TTTACCTTCATCCGTCCCAG+AGG | + | chr5_3:50448361-50448380 | None:intergenic | 50.0% | |
| CATAAATCACTTCTGCCCCG+TGG | + | chr5_3:50448441-50448460 | None:intergenic | 50.0% | |
| ! | AACAAAGAGGTGCACCCTAG+AGG | - | chr5_3:50448465-50448484 | Msa0816220:intron | 50.0% |
| ! | AAGAGTCTCCTCCTTTGGGA+TGG | - | chr5_3:50448514-50448533 | Msa0816220:intron | 50.0% |
| !! | TCCTCCTTTGGGATGGATGA+AGG | - | chr5_3:50448521-50448540 | Msa0816220:intron | 50.0% |
| TCCTTCATCCATCCCAAAGG+AGG | + | chr5_3:50448525-50448544 | None:intergenic | 50.0% | |
| CTAAGGAGCAGCCGTAGTTT+AGG | - | chr5_3:50448565-50448584 | Msa0816220:intron | 50.0% | |
| ! | AACAAGGAGGTGCACTCAAG+AGG | - | chr5_3:50448638-50448657 | Msa0816220:intron | 50.0% |
| GAGCCACTGAAACCTCAGTT+AGG | - | chr5_3:50448698-50448717 | Msa0816220:intron | 50.0% | |
| ACGCCTAACTGAGGTTTCAG+TGG | + | chr5_3:50448704-50448723 | None:intergenic | 50.0% | |
| ! | GCGGACTGTGCAACTAACAG+AGG | + | chr5_3:50448253-50448272 | None:intergenic | 55.0% |
| ATCCGGCATGAAGTCATGCG+CGG | + | chr5_3:50448272-50448291 | None:intergenic | 55.0% | |
| CTTGGGCCAGTTCCTGTGAA+GGG | + | chr5_3:50448306-50448325 | None:intergenic | 55.0% | |
| CACTTATGCCCTAGCCCCTA+TGG | + | chr5_3:50448607-50448626 | None:intergenic | 55.0% | |
| ! | GCGGACTGTGCAACTAACAG+AGG | + | chr5_3:50448253-50448272 | None:intergenic | 55.0% |
| ATCCGGCATGAAGTCATGCG+CGG | + | chr5_3:50448272-50448291 | None:intergenic | 55.0% | |
| CTTGGGCCAGTTCCTGTGAA+GGG | + | chr5_3:50448306-50448325 | None:intergenic | 55.0% | |
| CACTTATGCCCTAGCCCCTA+TGG | + | chr5_3:50448607-50448626 | None:intergenic | 55.0% | |
| GTCCGCGCATGACTTCATGC+CGG | - | chr5_3:50448267-50448286 | Msa0816220:intron | 60.0% | |
| GCTTGGGCCAGTTCCTGTGA+AGG | + | chr5_3:50448307-50448326 | None:intergenic | 60.0% | |
| !! | GTCTCCTCTGGGACGGATGA+AGG | - | chr5_3:50448354-50448373 | Msa0816220:intron | 60.0% |
| GTCCGCGCATGACTTCATGC+CGG | - | chr5_3:50448267-50448286 | Msa0816220:intron | 60.0% | |
| GCTTGGGCCAGTTCCTGTGA+AGG | + | chr5_3:50448307-50448326 | None:intergenic | 60.0% | |
| !! | GTCTCCTCTGGGACGGATGA+AGG | - | chr5_3:50448354-50448373 | Msa0816220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50447632 | 50448841 | 50447632 | ID=Msa0816220;Name=Msa0816220 |
| chr5_3 | mRNA | 50447632 | 50448841 | 50447632 | ID=Msa0816220-mRNA-1;Parent=Msa0816220;Name=Msa0816220-mRNA-1;_AED=0.94;_eAED=1.00;_QI=0|0|0|0.33|0.5|0.33|3|0|74 |
| chr5_3 | exon | 50448821 | 50448841 | 50448821 | ID=Msa0816220-mRNA-1:exon:15150;Parent=Msa0816220-mRNA-1 |
| chr5_3 | exon | 50448098 | 50448205 | 50448098 | ID=Msa0816220-mRNA-1:exon:15149;Parent=Msa0816220-mRNA-1 |
| chr5_3 | exon | 50447632 | 50447727 | 50447632 | ID=Msa0816220-mRNA-1:exon:15148;Parent=Msa0816220-mRNA-1 |
| chr5_3 | CDS | 50448821 | 50448841 | 50448821 | ID=Msa0816220-mRNA-1:cds;Parent=Msa0816220-mRNA-1 |
| chr5_3 | CDS | 50448098 | 50448205 | 50448098 | ID=Msa0816220-mRNA-1:cds;Parent=Msa0816220-mRNA-1 |
| chr5_3 | CDS | 50447632 | 50447727 | 50447632 | ID=Msa0816220-mRNA-1:cds;Parent=Msa0816220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
