AlfalfaGEDB | Msa0477630

M. sativa cultivar zhongmu-4 / Msa0477630

KEGG: K09420|K09422|K21769
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0032875 GO:0042127 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477630	XP_013461972.1	95.033	906	41	3	1	905	1	903	0.0	1756

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477630	sp\|Q9S7G7\|MB3R1_ARATH	54.762	420	151	9	17	407	19	428	3.18e-127	405
Msa0477630	sp\|Q9S7G7\|MB3R1_ARATH	51.630	184	75	4	429	611	520	690	1.70e-44	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477630	A0A072V2D4	95.033	906	41	3	1	905	1	903	0.0	1756

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TFs/TRs:

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Gene ID	Type	Classification
Msa0477630	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0477630	0.826915	2.087106e-54	-8.615850e-47
Msa0006840	Msa0477630	0.832369	9.832216e-56	-8.615850e-47
Msa0015150	Msa0477630	0.816910	4.333523e-52	-8.615850e-47
Msa0015570	Msa0477630	0.860058	2.690971e-63	-8.615850e-47
Msa0016040	Msa0477630	0.838133	3.446378e-57	-8.615850e-47
Msa0016530	Msa0477630	0.856812	2.498108e-62	-8.615850e-47
Msa0018920	Msa0477630	0.843833	1.098661e-58	-8.615850e-47
Msa0019930	Msa0477630	0.837679	4.507447e-57	-8.615850e-47
Msa0020540	Msa0477630	0.887721	1.112200e-72	-8.615850e-47
Msa0025160	Msa0477630	0.803995	2.671049e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477630	MtrunA17_Chr3g0139671	95.033	906	41	3	1	905	1	903	0.0	1756
Msa0477630	MtrunA17_Chr1g0157731	55.319	987	296	30	12	880	17	976	0.0	936
Msa0477630	MtrunA17_Chr7g0238631	72.043	186	50	2	21	205	50	234	3.27e-90	297
Msa0477630	MtrunA17_Chr5g0397841	58.553	152	60	1	31	179	53	204	2.00e-57	205
Msa0477630	MtrunA17_Chr5g0429661	57.282	103	44	0	83	185	120	222	5.81e-38	145
Msa0477630	MtrunA17_Chr5g0429661	38.947	95	57	1	33	127	122	215	7.36e-15	77.4
Msa0477630	MtrunA17_Chr3g0117511	59.223	103	42	0	83	185	181	283	6.74e-38	147
Msa0477630	MtrunA17_Chr3g0117511	38.542	96	58	1	33	128	183	277	5.66e-14	75.5
Msa0477630	MtrunA17_Chr4g0053431	53.211	109	51	0	84	192	4	112	9.92e-38	142
Msa0477630	MtrunA17_Chr4g0053431	36.364	99	62	1	33	131	5	102	5.35e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477630	AT4G32730.1	54.762	420	151	9	17	407	19	428	3.23e-128	405
Msa0477630	AT4G32730.1	51.630	184	75	4	429	611	520	690	1.72e-45	176
Msa0477630	AT4G32730.5	54.762	420	151	9	17	407	19	428	2.61e-126	406
Msa0477630	AT4G32730.5	40.351	513	233	16	429	905	520	995	1.42e-87	301
Msa0477630	AT4G32730.4	54.762	420	151	9	17	407	19	428	2.61e-126	406
Msa0477630	AT4G32730.4	40.351	513	233	16	429	905	520	995	1.42e-87	301
Msa0477630	AT4G32730.3	54.762	420	151	9	17	407	19	428	2.61e-126	406
Msa0477630	AT4G32730.3	40.351	513	233	16	429	905	520	995	1.42e-87	301
Msa0477630	AT4G32730.2	54.762	420	151	9	17	407	19	428	2.61e-126	406
Msa0477630	AT4G32730.2	40.351	513	233	16	429	905	520	995	1.42e-87	301

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Find 223 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGGCTATGATGCACT+TGG	0.632682	3_3:+81914734	Msa0477630:CDS
AAAAGGTGTTTATGAACAAA+GGG	0.453889	3_3:-81914556	None:intergenic
AAACAAAGAAGCATGGACGC+AGG	0.638047	3_3:+81912076	Msa0477630:CDS
AAAGGGGATTTCCATGCTGA+AGG	0.584970	3_3:-81914539	None:intergenic
AAAGGTGTTTATGAACAAAG+GGG	0.692079	3_3:-81914555	None:intergenic
AAATCAGTTGGTCGGCTCTG+AGG	0.627123	3_3:+81913253	Msa0477630:CDS
AAATGTGCATACACAACAGG+AGG	0.651652	3_3:+81913397	Msa0477630:CDS
AAATTGGCAGTCCACGTTTG+CGG	0.502917	3_3:-81912910	None:intergenic
AACATTATTTACTCCTCCAG+AGG	0.608718	3_3:-81913150	None:intergenic
AACGATCCTCATAATCAGCC+TGG	0.476281	3_3:+81914875	Msa0477630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGACATCAACATTCAAAGTA+GGG	-	chr3_3:81909165-81909184	None:intergenic	30.0%
TTGACATCAACATTCAAAGT+AGG	-	chr3_3:81909166-81909185	None:intergenic	30.0%
TTCTTCAACATCTATCCATT+CGG	+	chr3_3:81909197-81909216	Msa0477630:five_prime_UTR	30.0%
AGCTTCAGAAATGAAGATAT+TGG	-	chr3_3:81909265-81909284	None:intergenic	30.0%
GATTAGGGATTAGAATGATT+TGG	+	chr3_3:81909651-81909670	Msa0477630:five_prime_UTR	30.0%
TCAAATTCAAACAATTGCTG+CGG	+	chr3_3:81910051-81910070	Msa0477630:intron	30.0%
TTAGCATGTGCTTATAATCT+TGG	-	chr3_3:81910191-81910210	None:intergenic	30.0%
CTAAACTTTCTCAACTTCAA+TGG	+	chr3_3:81910454-81910473	Msa0477630:intron	30.0%
AAACTTTCTCAACTTCAATG+GGG	+	chr3_3:81910456-81910475	Msa0477630:intron	30.0%
TAGTGACCTTGATGAATAAT+TGG	-	chr3_3:81910499-81910518	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	81909075	81915472	81909075	ID=Msa0477630;Name=Msa0477630
chr3_3	mRNA	81909075	81915472	81909075	ID=Msa0477630-mRNA-1;Parent=Msa0477630;Name=Msa0477630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=320\|1\|1\|1\|0.90\|0.83\|12\|243\|905
chr3_3	exon	81909075	81909291	81909075	ID=Msa0477630-mRNA-1:exon:22669;Parent=Msa0477630-mRNA-1
chr3_3	exon	81909620	81909787	81909620	ID=Msa0477630-mRNA-1:exon:22670;Parent=Msa0477630-mRNA-1
chr3_3	exon	81910754	81910808	81910754	ID=Msa0477630-mRNA-1:exon:22671;Parent=Msa0477630-mRNA-1
chr3_3	exon	81911152	81911209	81911152	ID=Msa0477630-mRNA-1:exon:22672;Parent=Msa0477630-mRNA-1
chr3_3	exon	81911474	81911568	81911474	ID=Msa0477630-mRNA-1:exon:22673;Parent=Msa0477630-mRNA-1
chr3_3	exon	81911692	81911795	81911692	ID=Msa0477630-mRNA-1:exon:22674;Parent=Msa0477630-mRNA-1
chr3_3	exon	81912049	81912177	81912049	ID=Msa0477630-mRNA-1:exon:22675;Parent=Msa0477630-mRNA-1
chr3_3	exon	81912488	81913958	81912488	ID=Msa0477630-mRNA-1:exon:22676;Parent=Msa0477630-mRNA-1
chr3_3	exon	81914125	81914405	81914125	ID=Msa0477630-mRNA-1:exon:22677;Parent=Msa0477630-mRNA-1
chr3_3	exon	81914502	81914616	81914502	ID=Msa0477630-mRNA-1:exon:22678;Parent=Msa0477630-mRNA-1
chr3_3	exon	81914704	81914928	81914704	ID=Msa0477630-mRNA-1:exon:22679;Parent=Msa0477630-mRNA-1
chr3_3	exon	81915110	81915472	81915110	ID=Msa0477630-mRNA-1:exon:22680;Parent=Msa0477630-mRNA-1
chr3_3	five_prime_UTR	81909075	81909291	81909075	ID=Msa0477630-mRNA-1:five_prime_utr;Parent=Msa0477630-mRNA-1
chr3_3	five_prime_UTR	81909620	81909722	81909620	ID=Msa0477630-mRNA-1:five_prime_utr;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81909723	81909787	81909723	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81910754	81910808	81910754	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81911152	81911209	81911152	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81911474	81911568	81911474	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81911692	81911795	81911692	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81912049	81912177	81912049	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81912488	81913958	81912488	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81914125	81914405	81914125	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81914502	81914616	81914502	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81914704	81914928	81914704	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	CDS	81915110	81915229	81915110	ID=Msa0477630-mRNA-1:cds;Parent=Msa0477630-mRNA-1
chr3_3	three_prime_UTR	81915230	81915472	81915230	ID=Msa0477630-mRNA-1:three_prime_utr;Parent=Msa0477630-mRNA-1

Gene Sequence

>Msa0477630

ATGGGAAGTGAGACCACAATTCCTGCTCTATCAGATGGTGTACAGAAAATTAGAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGCTCCACTAAAGGACAATGGACGCCTGAGGAGGATGATATATTGAGGAAGGCTGTTGAGCGTTTTCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAAAAAGTCTTAAATCCAGAACTTATCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAACAATTGTTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAACATTTACCTGGACGTATCGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAAGAAGCATGGACGCAGGAAGAAGAGTTGGCTCTAATACATGCTCATCAGATATATGGGAACAGATGGGCAGAATTATCAAAGTTTTTGCCTGGAAGGACAGACAATGCTATAAAGAACCACTGGAATAGTTCTGTTAAGAAAAAATTGGATTCCTACTTGGCGTCAGGCTTGCTTGCTCAGTTTCAAAATGTCCCACTTGTTGGAAATCCAAATCAACCTATTGCTTCATCCTCTGCAAGGTTGCAGTTTAGTGTAGATGATAATGGTCCTAGGGGCACGGAAGGTGAGGAAGTTTCACAGTGTAGCCAAGAGTCGGTTAACGCTAGTCACTTTCCATCTGGCAGAGAGTTGAGCATTGCCGTTATACAAAATGTGGAGGAGTACAGGCACAACGCAGAATCTAATCAAGCATCATGTTCAGAGCCATATTACATGTCTCTGGATGGTGTTACCCGCCAAGAGGTTTGCTCCTCTCAATTTCTTGAGCAAAAATATTCAAACAAACCTGGGAGTTCCTCCGCAAACGTGGACTGCCAATTTAATTTACATGCTTTGCCCGCCTCACTGGACTTTGGGCAGGAATCGATGCAGTTGCAAAATGATTCTTTAGCTTCTAGTGAAAGTCATGACATGATGATTGTTCCATATGAATATCAGCCTTCATCTATGGGCAATGCTAAAGGAGAACAAAACATGTTGATAACTGATGATGAATGCAGATTCCTATTTTCAGAGACAATGAGCGATGAATGTTTTTCCTCTGGAGGAGTAAATAATGTTGACTTGTGTGGATACACTTCATCTCTTTGTCATTCGTCTTTACCATCTGATAGTAGGATGATAATGTATACTGCCGAAGCAAATCAGTTGGTCGGCTCTGAGGATCAGCAGTTTGTCTCGAGGGAAGATGATGTGAAAGATGATAGTTTAAAATTGGAGTCTGTAAGTAGTTCTGGATGTGGATCAGATACGATGCAAACTTGCTATCCAATTGATGAAAAGCCAAATGTGCATACACAACAGGAGGAAACAGGAGGAACTCTATGTTATGAACCACCCCGTTTTCCAAGCGTGGATATACCTTTCTTGAGCTGTGATCTTATACAATCTGGAGATATGCAGCAAGAATTTAGTCCCTTAGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCTTTCAGATTGTGGGACTCGCCTTCCCGCATTGATAGTCCGGACGCTTTGTTAAAAAGTGCTGCTAAAACTTTCACAAGTACACCGTCCATAATGAAGAAGAAGAAGAAACGAAACCGAGACAGAGACCTTTTATCTCCACTATCAGATAGAAGAATGGAGAAGAAACATGAGATTGACATGACGTCAACTCTGATTAGAAACTTCTCCCGTTTGGATGTCATGTTTGATGACAATGAGACTCAAGGTATTGAAGATGATAAAGAAAATCGTGGACCAGCTTTTAAGGTGGAGGATAAAATTAACTCTAAGGAGAAGAATGAGCAGCCTCCGCTTGATGCCGATTCTAAGATGAAGAATGATATTGATACTACTGCTGAAATTGTGCAACAGCCTTCTCGAGTTTTGATTGAACATGATATGAATGATCCATCGCCGTATTCTCCTAATCAAGTTGGTTTGAAATCAGACATAGTTCTAAGTTTAAGTGCTCGAAGTCATAAAAAATCAGTCTCAAGATTTAGCTCTCCTTGTGTTCGATTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTGCAATCCGTCTGTTCATCATCAATCCCAGGAGAGAATATGGGTGATCAAACCGGAAATGATGATGGTTTTGAAACAAATAGCATTTTTGGAGGAACGCCTTTTAGGAAAAGCTTTGAATCACCTTCAGCATGGAAATCCCCTTTGTTCATAAACACCTTTTTGTCTAGTCCTAGGATTGATGCTGAAATTACTATCGAGGACTACGGATGTTTCTTTAGCCCGGGTGATAAAAGCGGCTATGATGCACTTGGATGGATTAAGCAGATTGGTGAACACACTGCTGCTCAATATGCCAATGCTCTAGATGTTTTAGAAAATGAAACTCCTAAGGCACTACCAAAAGATGTCTCTGGAGACAACCAGGAAAACAACGATCCTCATAATCAGCCTGGGAACCATTCTAAGTCACCTTCAAATGCTTTGGTGGAGCGACGCATGCTTGACTTCAGCGAATGTGGAACTCCAAACAAAGGTGATAAGGGCAAATCCTCAGCTATGAGTGTTTCAAGCCCTTCTTCGTATTTGTTGAAGGGCTGTAGATAG

Protein sequence

>Msa0477630

MGSETTIPALSDGVQKIRALHGRTTGPTRRSTKGQWTPEEDDILRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDETIVDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIHAHQIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVPLVGNPNQPIASSSARLQFSVDDNGPRGTEGEEVSQCSQESVNASHFPSGRELSIAVIQNVEEYRHNAESNQASCSEPYYMSLDGVTRQEVCSSQFLEQKYSNKPGSSSANVDCQFNLHALPASLDFGQESMQLQNDSLASSESHDMMIVPYEYQPSSMGNAKGEQNMLITDDECRFLFSETMSDECFSSGGVNNVDLCGYTSSLCHSSLPSDSRMIMYTAEANQLVGSEDQQFVSREDDVKDDSLKLESVSSSGCGSDTMQTCYPIDEKPNVHTQQEETGGTLCYEPPRFPSVDIPFLSCDLIQSGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRIDSPDALLKSAAKTFTSTPSIMKKKKKRNRDRDLLSPLSDRRMEKKHEIDMTSTLIRNFSRLDVMFDDNETQGIEDDKENRGPAFKVEDKINSKEKNEQPPLDADSKMKNDIDTTAEIVQQPSRVLIEHDMNDPSPYSPNQVGLKSDIVLSLSARSHKKSVSRFSSPCVRLKEHERLSVSVTCVQSVCSSSIPGENMGDQTGNDDGFETNSIFGGTPFRKSFESPSAWKSPLFINTFLSSPRIDAEITIEDYGCFFSPGDKSGYDALGWIKQIGEHTAAQYANALDVLENETPKALPKDVSGDNQENNDPHNQPGNHSKSPSNALVERRMLDFSECGTPNKGDKGKSSAMSVSSPSSYLLKGCR*