AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127340 MtrunA17_Chr1g0191851 98.458 778 12 0 1 778 1 778 0.0 1583
Msa0127340 MtrunA17_Chr7g0272871 66.106 773 200 15 10 776 7 723 0.0 959
Msa0127340 MtrunA17_Chr5g0411971 55.532 479 204 4 76 549 327 801 1.64e-174 529
Msa0127340 MtrunA17_Chr5g0421591 55.675 467 200 3 76 537 302 766 1.65e-173 522
Msa0127340 MtrunA17_Chr5g0421521 55.460 467 201 3 76 537 302 766 2.59e-172 521
Msa0127340 MtrunA17_Chr2g0312631 54.832 476 203 5 78 542 310 784 6.81e-172 522
Msa0127340 MtrunA17_Chr1g0192481 50.970 361 165 5 133 485 44 400 1.94e-107 340
Msa0127340 MtrunA17_Chr1g0195111 48.209 363 181 4 133 490 382 742 1.33e-101 336
Msa0127340 MtrunA17_Chr7g0271961 45.813 406 181 6 133 528 387 763 1.54e-100 333
Msa0127340 MtrunA17_Chr5g0447041 45.813 406 169 7 133 490 420 822 1.18e-97 328
Msa0127340 MtrunA17_Chr4g0042061 45.974 385 185 6 114 481 404 782 6.28e-96 316
Msa0127340 MtrunA17_Chr3g0102921 46.561 378 178 8 133 490 424 797 1.46e-94 319
Msa0127340 MtrunA17_Chr2g0319271 44.140 401 200 6 97 478 352 747 1.81e-94 311
Msa0127340 MtrunA17_Chr7g0257301 41.215 461 221 8 74 496 320 768 3.14e-93 314
Msa0127340 MtrunA17_Chr2g0280421 47.765 358 174 7 134 482 424 777 1.25e-88 296
Msa0127340 MtrunA17_Chr1g0191181 44.226 407 203 9 123 517 66 460 1.28e-88 292
Msa0127340 MtrunA17_Chr4g0049011 41.207 381 194 7 114 474 251 621 4.86e-83 277
Msa0127340 MtrunA17_Chr8g0369881 42.005 369 204 4 127 492 855 1216 4.38e-78 274
Msa0127340 MtrunA17_Chr5g0407791 41.237 388 216 5 127 507 869 1251 2.46e-77 272
Msa0127340 MtrunA17_Chr1g0182151 38.038 418 225 13 147 537 54 464 6.27e-65 234
Msa0127340 MtrunA17_Chr8g0367581 42.442 344 176 8 132 469 131 458 8.98e-65 235
Msa0127340 MtrunA17_Chr1g0178411 35.698 437 224 11 147 532 13 443 5.97e-58 214
Msa0127340 MtrunA17_Chr1g0152231 34.387 506 270 15 148 608 4 492 2.21e-57 210
Msa0127340 MtrunA17_Chr7g0266631 39.118 363 184 8 147 479 9 364 8.31e-57 210
Msa0127340 MtrunA17_Chr2g0327581 38.227 361 185 9 147 479 49 399 1.99e-56 209
Msa0127340 MtrunA17_Chr2g0307481 37.752 347 196 6 148 482 69 407 2.08e-55 201
Msa0127340 MtrunA17_Chr4g0045381 38.965 367 189 11 147 489 193 548 9.29e-55 205
Msa0127340 MtrunA17_Chr7g0269681 44.523 283 134 7 299 561 21 300 1.65e-53 192
Msa0127340 MtrunA17_Chr1g0193221 35.052 485 267 14 148 604 4 468 1.77e-52 198
Msa0127340 MtrunA17_Chr4g0062291 37.752 347 193 8 140 471 116 454 2.10e-52 194
Msa0127340 MtrunA17_Chr3g0122121 38.017 363 179 11 148 480 99 445 6.26e-51 193
Msa0127340 MtrunA17_Chr3g0132921 34.844 353 191 10 148 473 10 350 6.37e-51 186
Msa0127340 MtrunA17_Chr4g0069141 38.310 355 186 10 144 475 150 494 2.58e-50 192
Msa0127340 MtrunA17_Chr8g0377731 37.778 360 181 12 148 480 56 399 3.99e-50 190
Msa0127340 MtrunA17_Chr7g0245931 32.947 431 234 15 146 541 51 461 7.56e-50 189
Msa0127340 MtrunA17_Chr2g0322291 39.660 353 178 12 147 475 88 429 1.34e-49 189
Msa0127340 MtrunA17_Chr4g0053211 33.600 375 190 12 148 475 13 375 1.99e-47 182
Msa0127340 MtrunA17_Chr4g0070001 35.714 420 235 13 148 558 144 537 2.14e-47 182
Msa0127340 MtrunA17_Chr3g0134191 30.841 428 239 12 148 528 9 426 2.49e-47 181
Msa0127340 MtrunA17_Chr5g0398521 31.713 432 239 14 146 541 56 467 4.05e-47 180
Msa0127340 MtrunA17_Chr1g0153061 31.765 425 239 13 148 528 9 426 6.81e-47 180
Msa0127340 MtrunA17_Chr8g0386891 55.975 159 70 0 319 477 4 162 7.83e-47 172
Msa0127340 MtrunA17_Chr5g0427481 31.542 428 242 12 148 532 18 437 7.93e-47 181
Msa0127340 MtrunA17_Chr6g0483701 32.763 409 238 12 192 585 77 463 3.56e-46 178
Msa0127340 MtrunA17_Chr4g0035661 36.798 356 199 12 145 490 87 426 3.92e-46 178
Msa0127340 MtrunA17_Chr7g0258991 35.629 421 240 15 145 555 71 470 7.47e-45 174
Msa0127340 MtrunA17_Chr5g0405181 35.714 378 205 14 148 510 21 375 9.32e-45 173
Msa0127340 MtrunA17_Chr6g0485471 33.923 339 199 8 148 474 116 441 9.64e-45 171
Msa0127340 MtrunA17_Chr2g0331761 33.803 355 210 8 148 490 186 527 1.68e-44 171
Msa0127340 MtrunA17_Chr3g0145071 35.965 342 194 11 148 480 100 425 2.58e-44 172
Msa0127340 MtrunA17_Chr6g0484501 55.346 159 71 0 319 477 34 192 1.18e-43 157
Msa0127340 MtrunA17_Chr8g0372171 36.559 372 205 14 148 504 20 375 1.57e-43 170
Msa0127340 MtrunA17_Chr3g0142261 33.666 401 234 14 148 536 20 400 4.05e-42 166
Msa0127340 MtrunA17_Chr8g0386901 49.412 170 77 3 132 294 468 635 9.89e-42 162
Msa0127340 MtrunA17_Chr3g0101021 36.013 311 166 7 192 475 108 412 1.52e-41 164
Msa0127340 MtrunA17_Chr8g0390991 53.086 162 76 0 324 485 9 170 2.56e-41 159
Msa0127340 MtrunA17_Chr7g0269691 41.038 212 109 5 89 289 339 545 8.80e-41 158
Msa0127340 MtrunA17_Chr4g0067421 35.674 356 190 13 148 478 206 547 3.34e-40 159
Msa0127340 MtrunA17_Chr2g0295881 34.734 357 194 11 148 478 198 541 3.98e-40 159
Msa0127340 MtrunA17_Chr8g0390981 48.485 165 73 4 132 288 500 660 4.74e-40 157
Msa0127340 MtrunA17_Chr7g0238581 32.143 336 206 8 148 471 26 351 2.84e-39 154
Msa0127340 MtrunA17_Chr4g0036001 33.684 380 210 13 148 511 25 378 1.23e-37 151
Msa0127340 MtrunA17_Chr6g0484511 46.386 166 75 5 132 288 274 434 2.57e-37 146
Msa0127340 MtrunA17_Chr5g0445211 33.030 330 181 12 183 480 97 418 1.87e-35 145
Msa0127340 MtrunA17_Chr1g0187411 29.483 329 178 12 183 475 162 472 1.89e-24 109
Msa0127340 MtrunA17_Chr6g0470541 27.922 308 207 9 148 451 6 302 3.23e-23 105
Msa0127340 MtrunA17_Chr3g0142841 26.071 280 177 7 194 458 145 409 6.09e-19 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127340 AT5G27550.2 63.038 744 242 12 39 766 18 744 0.0 886
Msa0127340 AT5G27550.1 63.038 744 242 12 39 766 18 744 0.0 886
Msa0127340 AT2G22610.2 55.819 464 198 3 79 537 348 809 1.16e-174 530
Msa0127340 AT2G22610.1 55.819 464 198 3 79 537 348 809 2.44e-174 530
Msa0127340 AT2G22610.3 55.819 464 198 3 79 537 349 810 2.70e-174 530
Msa0127340 AT1G72250.4 45.493 710 311 17 78 727 437 1130 2.68e-173 531
Msa0127340 AT1G72250.3 45.493 710 311 17 78 727 438 1131 2.99e-173 531
Msa0127340 AT1G72250.2 45.248 705 320 14 78 727 426 1119 5.20e-173 530
Msa0127340 AT1G72250.1 45.429 711 317 17 72 727 416 1110 1.15e-172 529
Msa0127340 AT5G27000.1 50.413 363 173 3 133 490 380 740 2.62e-107 351
Msa0127340 AT1G09170.4 47.583 393 181 5 133 520 420 792 2.14e-106 345
Msa0127340 AT1G09170.3 49.730 370 175 5 133 497 420 783 2.15e-106 345
Msa0127340 AT1G09170.7 49.730 370 175 5 133 497 420 783 2.15e-106 345
Msa0127340 AT1G09170.2 47.583 393 181 5 133 520 420 792 1.05e-105 345
Msa0127340 AT2G47500.2 46.717 396 179 6 133 520 385 756 3.60e-105 345
Msa0127340 AT2G47500.1 46.717 396 179 6 133 520 385 756 5.01e-105 345
Msa0127340 AT1G09170.5 47.583 393 181 5 133 520 420 792 1.24e-104 345
Msa0127340 AT5G41310.1 46.535 404 182 5 83 477 360 738 1.14e-102 338
Msa0127340 AT3G10310.2 44.804 433 214 9 70 496 301 714 2.98e-102 337
Msa0127340 AT3G10310.1 44.804 433 214 9 70 496 301 714 3.78e-102 337
Msa0127340 AT1G18410.3 50.000 364 168 5 127 481 469 827 7.67e-101 334
Msa0127340 AT1G18410.2 50.000 364 168 5 127 481 469 827 7.67e-101 334
Msa0127340 AT3G44730.1 49.319 367 162 6 133 485 363 719 1.13e-100 335
Msa0127340 AT3G44730.4 49.319 367 162 6 133 485 363 719 1.13e-100 335
Msa0127340 AT3G44730.2 49.319 367 162 6 133 485 408 764 1.87e-100 335
Msa0127340 AT3G44730.3 49.319 367 162 6 133 485 408 764 1.87e-100 335
Msa0127340 AT1G18410.4 50.000 364 168 5 127 481 612 970 2.47e-99 333
Msa0127340 AT1G73860.2 48.588 354 171 3 132 477 411 761 9.60e-99 327
Msa0127340 AT1G73860.1 48.588 354 171 3 132 477 494 844 2.79e-98 328
Msa0127340 AT1G63640.1 50.282 354 162 6 133 477 458 806 5.97e-98 328
Msa0127340 AT1G63640.4 50.282 354 162 6 133 477 458 806 5.97e-98 328
Msa0127340 AT1G63640.3 50.282 354 162 6 133 477 458 806 6.12e-98 328
Msa0127340 AT1G18410.5 49.036 363 165 5 127 481 459 809 6.26e-98 326
Msa0127340 AT1G63640.5 50.282 354 162 6 133 477 448 796 7.94e-98 327
Msa0127340 AT1G63640.2 50.000 356 153 6 133 477 458 799 1.57e-97 326
Msa0127340 AT1G18410.1 49.036 363 165 5 127 481 612 962 4.11e-96 324
Msa0127340 AT5G54670.3 47.135 384 190 4 112 482 301 684 6.56e-96 313
Msa0127340 AT5G54670.1 47.135 384 190 4 112 482 361 744 1.79e-95 314
Msa0127340 AT5G54670.2 47.135 384 190 4 112 482 361 744 1.79e-95 314
Msa0127340 AT4G27180.1 46.094 384 192 5 112 481 352 734 6.54e-93 307
Msa0127340 AT4G27180.2 46.094 384 192 5 112 481 352 734 6.54e-93 307
Msa0127340 AT1G55550.1 42.487 386 196 5 98 474 46 414 2.47e-92 308
Msa0127340 AT4G05190.2 46.429 364 176 6 134 479 402 764 3.39e-91 303
Msa0127340 AT4G05190.1 46.429 364 176 6 134 479 415 777 4.49e-91 303
Msa0127340 AT4G21270.1 46.429 364 176 5 134 479 418 780 1.12e-90 302
Msa0127340 AT1G09170.6 50.645 310 145 4 133 437 420 726 1.12e-88 295
Msa0127340 AT1G09170.8 50.645 310 145 4 133 437 420 726 1.12e-88 295
Msa0127340 AT5G27950.1 45.777 367 173 8 120 473 53 406 1.34e-86 287
Msa0127340 AT1G09170.1 44.529 393 157 8 133 520 420 756 1.67e-86 295
Msa0127340 AT5G65930.3 41.775 383 213 5 113 492 860 1235 2.93e-77 272
Msa0127340 AT5G65930.2 41.775 383 213 5 113 492 854 1229 3.35e-77 272
Msa0127340 AT5G65930.1 41.775 383 213 5 113 492 853 1228 4.27e-77 271
Msa0127340 AT2G37420.1 35.646 418 234 12 147 537 48 457 6.38e-62 226
Msa0127340 AT2G37420.2 35.646 418 234 12 147 537 48 457 6.38e-62 226
Msa0127340 AT5G65460.6 31.755 507 291 15 58 531 28 512 1.75e-60 222
Msa0127340 AT5G65460.2 31.755 507 291 15 58 531 28 512 2.71e-60 221
Msa0127340 AT5G65460.1 31.755 507 291 15 58 531 28 512 2.98e-60 222
Msa0127340 AT5G65460.4 31.755 507 291 15 58 531 28 512 2.99e-60 222
Msa0127340 AT5G10470.2 34.634 410 238 10 132 531 127 516 1.97e-58 216
Msa0127340 AT5G10470.1 34.634 410 238 10 132 531 127 516 2.22e-58 216
Msa0127340 AT3G45850.2 39.326 356 188 9 147 479 55 405 3.22e-58 215
Msa0127340 AT3G45850.1 39.326 356 188 9 147 479 55 405 3.22e-58 215
Msa0127340 AT2G28620.3 33.669 496 260 13 147 579 50 539 4.14e-58 214
Msa0127340 AT2G28620.2 33.669 496 260 13 147 579 50 539 4.14e-58 214
Msa0127340 AT2G28620.1 33.669 496 260 13 147 579 50 539 4.30e-58 214
Msa0127340 AT5G65460.3 31.323 514 291 16 58 531 28 519 5.51e-58 215
Msa0127340 AT2G36200.1 38.843 363 185 8 147 479 12 367 1.54e-57 213
Msa0127340 AT2G36200.2 38.843 363 185 8 147 479 12 367 2.67e-57 212
Msa0127340 AT1G18550.1 37.798 336 191 5 148 471 152 481 2.36e-55 203
Msa0127340 AT4G14150.1 38.997 359 178 11 148 480 92 435 3.55e-55 206
Msa0127340 AT3G49650.1 33.168 404 225 5 148 540 15 384 5.72e-55 203
Msa0127340 AT3G19050.1 39.266 354 180 11 147 476 193 535 5.15e-54 203
Msa0127340 AT3G17360.3 39.200 375 191 12 147 496 168 530 2.62e-53 201
Msa0127340 AT3G17360.2 39.200 375 191 12 147 496 168 530 2.76e-53 201
Msa0127340 AT3G17360.1 39.200 375 191 12 147 496 168 530 2.84e-53 201
Msa0127340 AT3G23670.2 38.068 352 177 10 148 473 97 433 3.50e-53 199
Msa0127340 AT3G23670.1 38.068 352 177 10 148 473 97 433 4.40e-53 200
Msa0127340 AT3G63480.2 36.705 346 202 6 147 480 3 343 7.97e-53 191
Msa0127340 AT1G59540.1 35.294 374 199 10 194 550 46 393 4.55e-52 195
Msa0127340 AT3G63480.1 36.571 350 201 7 147 480 3 347 1.53e-51 187
Msa0127340 AT5G27950.2 45.344 247 115 7 240 473 1 240 1.71e-51 187
Msa0127340 AT5G60930.3 35.083 362 193 7 148 473 7 362 3.51e-50 191
Msa0127340 AT5G60930.1 35.083 362 193 7 148 473 7 362 5.68e-50 191
Msa0127340 AT5G60930.2 35.083 362 193 7 148 473 7 362 6.24e-50 191
Msa0127340 AT3G44050.1 39.205 352 181 11 147 475 93 434 1.19e-47 183
Msa0127340 AT3G10180.2 38.235 340 170 8 148 467 4 323 1.27e-47 183
Msa0127340 AT3G50240.2 32.902 386 205 11 148 490 26 400 1.34e-47 182
Msa0127340 AT3G10180.1 38.889 342 165 10 148 467 4 323 1.48e-47 183
Msa0127340 AT3G50240.4 32.902 386 205 11 148 490 26 400 3.12e-47 182
Msa0127340 AT3G50240.1 32.902 386 205 11 148 490 26 400 3.84e-47 181
Msa0127340 AT1G01950.1 32.093 430 231 13 146 539 59 463 5.19e-47 181
Msa0127340 AT1G01950.2 32.093 430 231 13 146 539 59 463 5.61e-47 180
Msa0127340 AT1G01950.3 32.093 430 231 13 146 539 59 463 6.32e-47 180
Msa0127340 AT5G47820.2 32.308 390 214 10 147 493 11 393 7.88e-47 181
Msa0127340 AT5G47820.1 32.308 390 214 10 147 493 11 393 7.88e-47 181
Msa0127340 AT4G24170.1 38.138 333 184 9 148 471 7 326 7.93e-47 180
Msa0127340 AT4G24170.2 38.138 333 184 9 148 471 7 326 7.93e-47 180
Msa0127340 AT1G21730.1 36.029 408 217 15 144 534 72 452 9.94e-47 179
Msa0127340 AT5G06670.8 37.255 357 198 12 145 490 64 405 1.17e-46 178
Msa0127340 AT5G06670.4 37.255 357 198 12 145 490 64 405 1.17e-46 178
Msa0127340 AT5G06670.7 37.255 357 198 12 145 490 64 405 1.17e-46 178
Msa0127340 AT5G06670.5 37.255 357 198 12 145 490 64 405 1.92e-46 177
Msa0127340 AT1G18370.1 33.333 441 250 15 148 567 32 449 4.03e-46 178
Msa0127340 AT1G12430.2 32.084 427 231 13 148 531 71 481 6.38e-46 177
Msa0127340 AT1G12430.1 32.084 427 231 13 148 531 71 481 6.77e-46 177
Msa0127340 AT3G16060.1 34.302 344 201 8 148 479 170 500 9.09e-46 175
Msa0127340 AT5G06670.2 37.255 357 198 12 145 490 64 405 1.02e-45 177
Msa0127340 AT5G06670.3 37.255 357 198 12 145 490 64 405 1.02e-45 177
Msa0127340 AT3G54870.3 32.663 398 226 12 166 542 125 501 1.80e-45 176
Msa0127340 AT3G54870.1 32.663 398 226 12 166 542 125 501 2.05e-45 176
Msa0127340 AT3G54870.2 32.663 398 226 12 166 542 125 501 2.37e-45 176
Msa0127340 AT2G21380.2 36.517 356 200 12 145 490 102 441 1.08e-44 174
Msa0127340 AT2G21380.1 36.517 356 200 12 145 490 102 441 1.08e-44 174
Msa0127340 AT5G66310.2 34.127 378 213 12 148 511 19 374 1.35e-44 174
Msa0127340 AT5G66310.3 34.127 378 213 12 148 511 19 374 1.35e-44 174
Msa0127340 AT5G66310.1 34.127 378 213 12 148 511 19 374 1.35e-44 174
Msa0127340 AT4G39050.1 36.232 345 195 11 145 480 96 424 1.80e-44 173
Msa0127340 AT5G06670.6 36.612 366 197 13 145 490 64 414 3.72e-44 172
Msa0127340 AT5G06670.1 36.612 366 197 13 145 490 64 414 3.72e-44 172
Msa0127340 AT3G12020.4 36.053 380 208 13 145 513 67 422 1.00e-43 171
Msa0127340 AT3G12020.1 36.053 380 208 13 145 513 67 422 1.00e-43 171
Msa0127340 AT3G12020.3 36.053 380 208 13 145 513 67 422 1.54e-43 170
Msa0127340 AT3G12020.2 36.053 380 208 13 145 513 67 422 1.54e-43 170
Msa0127340 AT3G43210.3 34.663 401 233 13 148 536 30 413 4.79e-42 166
Msa0127340 AT3G43210.5 34.663 401 233 13 148 536 30 413 4.79e-42 166
Msa0127340 AT3G43210.2 34.663 401 233 13 148 536 30 413 4.79e-42 166
Msa0127340 AT3G43210.4 34.663 401 233 13 148 536 30 413 4.79e-42 166
Msa0127340 AT3G43210.1 34.663 401 233 13 148 536 30 413 4.79e-42 166
Msa0127340 AT3G51150.2 33.421 380 213 13 148 511 18 373 1.17e-41 164
Msa0127340 AT3G51150.4 33.421 380 213 13 148 511 18 373 1.17e-41 164
Msa0127340 AT3G51150.3 33.421 380 213 13 148 511 18 373 1.17e-41 164
Msa0127340 AT3G51150.1 33.421 380 213 13 148 511 18 373 1.18e-41 164
Msa0127340 AT4G38950.3 33.333 417 243 14 148 550 14 409 1.35e-39 157
Msa0127340 AT4G38950.5 33.333 417 243 14 148 550 14 409 1.35e-39 157
Msa0127340 AT4G38950.4 33.333 417 243 14 148 550 14 409 1.35e-39 157
Msa0127340 AT4G38950.1 33.333 417 243 14 148 550 14 409 1.35e-39 157
Msa0127340 AT4G38950.2 33.333 417 243 14 148 550 14 409 1.35e-39 157
Msa0127340 AT5G02370.1 31.845 336 203 8 147 471 20 340 1.45e-39 155
Msa0127340 AT2G21300.2 32.452 416 247 13 148 550 25 419 1.63e-39 157
Msa0127340 AT2G21300.4 32.452 416 247 13 148 550 25 419 1.63e-39 157
Msa0127340 AT2G21300.3 32.452 416 247 13 148 550 25 419 1.63e-39 157
Msa0127340 AT2G21300.1 32.452 416 247 13 148 550 25 419 1.63e-39 157
Msa0127340 AT2G21300.5 32.452 416 247 13 148 550 25 419 1.63e-39 157
Msa0127340 AT3G16630.2 34.078 358 192 11 148 478 194 534 3.49e-39 156
Msa0127340 AT3G16630.1 34.078 358 192 11 148 478 194 534 3.49e-39 156
Msa0127340 AT3G50240.3 35.216 301 149 8 231 490 3 298 3.48e-37 150
Msa0127340 AT3G20150.2 33.648 318 174 10 192 480 136 445 3.93e-37 150
Msa0127340 AT3G20150.1 33.648 318 174 10 192 480 136 445 4.38e-37 150
Msa0127340 AT1G59540.2 33.333 327 176 9 240 550 1 301 6.36e-37 149
Msa0127340 AT1G01950.4 32.659 346 176 10 227 539 1 322 3.83e-36 146
Msa0127340 AT4G14330.1 32.087 321 181 11 172 474 69 370 2.07e-30 129
Msa0127340 AT5G42490.2 34.680 297 170 10 148 435 10 291 2.47e-28 122
Msa0127340 AT5G42490.1 34.680 297 170 10 148 435 10 291 3.47e-28 122
Msa0127340 AT5G65460.5 30.597 268 167 6 269 531 13 266 1.65e-25 114
Msa0127340 AT3G51150.5 37.306 193 103 6 327 511 38 220 9.41e-22 101
Msa0127340 AT5G23910.1 26.333 300 197 9 188 481 51 332 4.45e-20 95.9
Msa0127340 AT5G23910.2 26.333 300 197 9 188 481 55 336 4.49e-20 95.9
Msa0127340 AT1G20060.7 28.214 280 177 6 194 458 165 435 9.56e-18 88.6
Msa0127340 AT1G20060.9 28.214 280 177 6 194 458 165 435 9.62e-18 88.6
Msa0127340 AT1G20060.3 28.214 280 177 6 194 458 165 435 9.65e-18 88.6
Msa0127340 AT1G20060.2 28.214 280 177 6 194 458 165 435 1.02e-17 88.6
Msa0127340 AT1G20060.6 28.214 280 177 6 194 458 165 435 1.03e-17 88.6
Msa0127340 AT1G20060.10 28.214 280 177 6 194 458 165 435 1.04e-17 88.6
Msa0127340 AT1G20060.4 28.214 280 177 6 194 458 165 435 1.12e-17 88.6
Msa0127340 AT1G20060.5 28.214 280 177 6 194 458 165 435 1.13e-17 88.6
Msa0127340 AT1G20060.8 28.214 280 177 6 194 458 165 435 1.27e-17 88.2

Find 217 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACCCTCCTCCTTGGTTTA+AGG 0.171517 1_3:+56583621 None:intergenic
GTTTACATCTGTTGTCAATT+TGG 0.203972 1_3:-56585992 Msa0127340:CDS
TAGGGGCAGCAGTAAGTTTA+TGG 0.243050 1_3:-56583411 Msa0127340:CDS
GAACACTTGAAGAATTATTT+AGG 0.243695 1_3:-56585633 Msa0127340:CDS
CAAGGTCTCTATTGCAGTTT+AGG 0.250766 1_3:+56583148 None:intergenic
TCAACTCCTGTTTGGGTTGT+TGG 0.250950 1_3:-56582956 Msa0127340:three_prime_UTR
TTGCTATTTCAACTCCTGTT+TGG 0.256292 1_3:-56582964 Msa0127340:three_prime_UTR
TGCTATTTCAACTCCTGTTT+GGG 0.256836 1_3:-56582963 Msa0127340:three_prime_UTR
TTGAACTCAAGGGTAATATA+AGG 0.274363 1_3:-56586062 Msa0127340:CDS
CATATACTACAGAGCTCTTT+AGG 0.303950 1_3:-56584608 Msa0127340:intron
ACTCTTGAAAAGAAAGTATC+TGG 0.319680 1_3:-56586124 Msa0127340:CDS
TACCAGAGGGGATAGCGTTT+GGG 0.320178 1_3:+56586701 None:intergenic
TGCCAAGGAGATCTTTAGTT+TGG 0.322135 1_3:-56583328 Msa0127340:CDS
ATTATACCTTGGTTATCTTC+TGG 0.322817 1_3:+56585889 None:intergenic
ATTTGATGGGTGTATCTCTT+TGG 0.323016 1_3:+56583764 None:intergenic
TCATGAGAATTCGTCGGATC+TGG 0.328822 1_3:-56586504 Msa0127340:CDS
TTTCCTTTCCATTCATTTGA+TGG 0.331856 1_3:+56583750 None:intergenic
TGTTGTCATTGAAGTCCTTC+TGG 0.336384 1_3:+56583721 None:intergenic
AGATGGTGGAGGCAAGAAAT+TGG 0.340603 1_3:+56583796 None:intergenic
CCGACCCCTCTGGCTCCTTA+TGG 0.344994 1_3:+56583502 None:intergenic
TTAAGGAGTTCTTTAGTTTG+TGG 0.347915 1_3:-56583227 Msa0127340:three_prime_UTR
AAGCATCCCACATCCCTTAC+AGG 0.349283 1_3:-56584729 Msa0127340:intron
GCAATGGAAGCCCTGCTTCT+TGG 0.350180 1_3:+56583677 None:intergenic
TGATTTGAGTACCAAAGTTC+AGG 0.360777 1_3:-56586450 Msa0127340:intron
ATCAAAGACTTTCTTCAGAA+TGG 0.364860 1_3:+56586469 None:intergenic
ATTCATAAACAAGTCTCTTT+CGG 0.366641 1_3:-56584785 Msa0127340:CDS
AGGTCTACTTGTTTGCGAGC+TGG 0.370672 1_3:+56584357 None:intergenic
GTGTATCTCTTTGGTGGTAT+AGG 0.370928 1_3:+56583773 None:intergenic
CGTTCATTTCCATGGTGTTT+CGG 0.374836 1_3:+56586883 None:intergenic
CCGCTGAGCTTGGACTTACT+TGG 0.376608 1_3:+56584442 None:intergenic
GTCTGAGTTGTATAGTTTGT+AGG 0.377352 1_3:+56584165 None:intergenic
TTACCAGAGGGGATAGCGTT+TGG 0.377497 1_3:+56586700 None:intergenic
GGTCTACTTGTTTGCGAGCT+GGG 0.379163 1_3:+56584358 None:intergenic
ACCTCAACTTCAAGGTTTGC+CGG 0.384823 1_3:-56583545 Msa0127340:CDS
CTTTAGTTTGGAGTCCTCTC+AGG 0.385108 1_3:-56583316 Msa0127340:CDS
TTGGTCTAATCGCTGGCAAT+GGG 0.390006 1_3:+56583462 None:intergenic
TGAACTCAAGGGTAATATAA+GGG 0.393970 1_3:-56586061 Msa0127340:CDS
TTAGTTTGTGGAGTCCTCTC+AGG 0.398755 1_3:-56583215 Msa0127340:three_prime_UTR
ATCTGAGAATGCCTCTTAGA+AGG 0.400155 1_3:-56583823 Msa0127340:CDS
AATACATGATCAAATTTAAA+CGG 0.400311 1_3:+56585916 None:intergenic
TAGTTAACACCCCTCTCTTC+CGG 0.402765 1_3:+56585658 None:intergenic
CTTGTTGAAGCTCGTGTTCA+TGG 0.402872 1_3:-56585156 Msa0127340:CDS
TTGAACTCTATTCAGCTTCT+CGG 0.405762 1_3:-56586235 Msa0127340:intron
ATATTTGCTTACGGACAAAC+TGG 0.408942 1_3:-56585712 Msa0127340:CDS
GTAAGGGATGTGGGATGCTT+TGG 0.409033 1_3:+56584732 None:intergenic
AACAAGTCTCTTTCGGCACT+TGG 0.410139 1_3:-56584778 Msa0127340:CDS
TTCCTTTCCATTCATTTGAT+GGG 0.410553 1_3:+56583751 None:intergenic
AGAGGCATTCTCAGATTTGA+AGG 0.411033 1_3:+56583830 None:intergenic
ATACCATTGTAAAAGCCTTC+AGG 0.416169 1_3:-56584129 Msa0127340:CDS
ATGATTATTCACCTGAACTT+TGG 0.418948 1_3:+56586439 None:intergenic
GATGAAAACAGTATGTCTAA+TGG 0.422830 1_3:-56586530 Msa0127340:CDS
CACTCCGTACCTCAACTTCA+AGG 0.428057 1_3:-56583553 Msa0127340:CDS
TGGTGGTTTCTTATCTGTCA+TGG 0.428905 1_3:+56583859 None:intergenic
TCAAAGACTTTCTTCAGAAT+GGG 0.429245 1_3:+56586470 None:intergenic
GCTTACGGACAAACTGGAAC+TGG 0.429550 1_3:-56585706 Msa0127340:CDS
GTCATAATAAAAGGCAGAAA+AGG 0.430341 1_3:-56584228 Msa0127340:intron
AAGGTCTATTGCAGTTTAGA+TGG 0.430439 1_3:+56583251 None:intergenic
TTGTAAAAGCCTTCAGGAAA+AGG 0.433773 1_3:-56584123 Msa0127340:intron
CGAAAACAAAATTACCTGTA+AGG 0.434522 1_3:+56584715 None:intergenic
CTTCTGCTATTTGATTCTCC+AGG 0.440502 1_3:+56583975 None:intergenic
CTCTTTGGTGGTATAGGAGA+TGG 0.442002 1_3:+56583779 None:intergenic
CTAAGGACTCACTTCTTAGT+AGG 0.442608 1_3:+56585505 None:intergenic
TGAGTTAAATGTTAGTATGT+TGG 0.446375 1_3:-56585578 Msa0127340:CDS
TCTCCTAAGTCCGCTGAGCT+TGG 0.448486 1_3:+56584432 None:intergenic
GGAGTAGTAATTTCAGATGT+TGG 0.450450 1_3:+56583575 None:intergenic
TAGGATATCTGAAGAGAGAA+AGG 0.455467 1_3:-56585614 Msa0127340:CDS
TTTGATCCAACAACCCAAAC+AGG 0.458402 1_3:+56582950 None:intergenic
AAAGGAAACAAAGAAATTGC+AGG 0.460458 1_3:-56584192 Msa0127340:CDS
ACCTATTGCTACATCAGTAT+TGG 0.462076 1_3:-56585752 Msa0127340:CDS
AGTCCAAGCTCAGCGGACTT+AGG 0.463534 1_3:-56584435 Msa0127340:CDS
AGTGAAAGTGAAAAGGCAAA+CGG 0.463697 1_3:-56586015 Msa0127340:CDS
CAAAACTTCGAGGCTTGTAA+AGG 0.469870 1_3:+56586255 None:intergenic
GTCTTCAAAGACCAAGAAGC+AGG 0.469942 1_3:-56583688 Msa0127340:CDS
AGTAAATGAAAACTCTGATT+CGG 0.472088 1_3:-56586555 Msa0127340:CDS
GTTGGTCTAATCGCTGGCAA+TGG 0.472803 1_3:+56583461 None:intergenic
TCCAATACTGATGTAGCAAT+AGG 0.474301 1_3:+56585751 None:intergenic
TGATATCTTGTTATGATCGT+CGG 0.480190 1_3:-56583021 Msa0127340:three_prime_UTR
CAATGAAATAATTGAACTCA+AGG 0.481110 1_3:-56586073 Msa0127340:CDS
AAATTTGAATTGTGGTTACA+AGG 0.482167 1_3:+56587051 None:intergenic
GGACTCACTTCTTAGTAGGC+TGG 0.483991 1_3:+56585509 None:intergenic
TCCCCAAACGCTATCCCCTC+TGG 0.486744 1_3:-56586703 Msa0127340:intron
CATGAGAATTCGTCGGATCT+GGG 0.487049 1_3:-56586503 Msa0127340:CDS
AGGGGCAGCAGTAAGTTTAT+GGG 0.487765 1_3:-56583410 Msa0127340:CDS
GGAGGGAACACCGGAAGAGA+GGG 0.488612 1_3:-56585668 Msa0127340:CDS
AGAAAACAAAGAGCCACCTT+TGG 0.490606 1_3:-56584879 Msa0127340:CDS
AAAGGCCAAACATGACGAAA+AGG 0.490654 1_3:-56584210 Msa0127340:CDS
GGAAACAGAGTCAGATCTGT+TGG 0.492722 1_3:-56585102 Msa0127340:CDS
AAAATTACCTGTAAGGGATG+TGG 0.492793 1_3:+56584722 None:intergenic
AGATACACCCATCAAATGAA+TGG 0.493454 1_3:-56583758 Msa0127340:CDS
GTGAAAGTGAAAAGGCAAAC+GGG 0.494451 1_3:-56586014 Msa0127340:CDS
GTTAAATGTTAGTATGTTGG+AGG 0.502560 1_3:-56585575 Msa0127340:CDS
TGATGGGTGTATCTCTTTGG+TGG 0.502676 1_3:+56583767 None:intergenic
GCAATGGAGACCCTCCTCCT+TGG 0.503128 1_3:+56583614 None:intergenic
TGTGGGATGCTTTGGATGCA+AGG 0.503488 1_3:+56584740 None:intergenic
GAACCTCCTTGTGCATGTAC+TGG 0.504269 1_3:+56583383 None:intergenic
GCAGTGTATCAGCAGCCATA+AGG 0.504817 1_3:-56583517 Msa0127340:CDS
AATGTCTGTATATTTGCTTA+CGG 0.505243 1_3:-56585721 Msa0127340:CDS
AACTGCAATAGACCTTGTTA+AGG 0.505525 1_3:-56583244 Msa0127340:exon
TGTTGCGAGTAACAGTCGTC+GGG 0.505582 1_3:-56584921 Msa0127340:CDS
ACCTTTAAGTGAAAGTGAAA+AGG 0.506096 1_3:-56586022 Msa0127340:CDS
GAATAGAGTTCAAAACTTCG+AGG 0.507690 1_3:+56586245 None:intergenic
ACCGATGTTGGTCTAATCGC+TGG 0.508342 1_3:+56583455 None:intergenic
CTTGCATTAGGATTTGAAGA+AGG 0.512259 1_3:-56586320 Msa0127340:intron
ATTGTGACAGGTACGGGACC+TGG 0.518658 1_3:-56583993 Msa0127340:intron
TGCTGATACACTGCTTCCAC+CGG 0.518911 1_3:+56583526 None:intergenic
TTGAAGCTCATTCTCAAGAG+TGG 0.519840 1_3:+56585966 None:intergenic
GTAATTTCAGATGTTGGCTC+AGG 0.521658 1_3:+56583581 None:intergenic
GCTGTTCAAGTACAAGCAAA+TGG 0.522611 1_3:-56584328 Msa0127340:intron
CGGTTTCTTTGAAGAGTCTG+AGG 0.523419 1_3:+56585936 None:intergenic
GAGATAAAGCAAGCTGCAGA+AGG 0.523443 1_3:-56585198 Msa0127340:CDS
ACACGAGCTTCAACAAGTCC+AGG 0.527659 1_3:+56585162 None:intergenic
AGCTTAGCAGCCGTTCCCAT+TGG 0.528012 1_3:-56585062 Msa0127340:intron
CTTGGCAATGCAATCGCAGT+TGG 0.528732 1_3:+56583344 None:intergenic
GACTCACTTCTTAGTAGGCT+GGG 0.529502 1_3:+56585510 None:intergenic
CATTTCCATGGTGTTTCGGA+AGG 0.531245 1_3:+56586887 None:intergenic
CTGCTGCCCCTAGCTGACAT+TGG 0.532416 1_3:+56583422 None:intergenic
AAGGAGGTTCGCGGATGGGT+AGG 0.533179 1_3:-56583370 Msa0127340:CDS
CTCAGATTTGAAGGATTCAG+TGG 0.534244 1_3:+56583839 None:intergenic
AAATTGGTTATCCTTCTAAG+AGG 0.538530 1_3:+56583812 None:intergenic
ATCTGCGTTGTTGATTGTAC+AGG 0.538792 1_3:+56583644 None:intergenic
GTGTGGGAATTGCTCAAGAC+TGG 0.539538 1_3:-56585123 Msa0127340:CDS
CTTTGGCTAGTAGACTTAGC+AGG 0.540176 1_3:-56584862 Msa0127340:CDS
GTCGGGGAGAATTTAATCAA+TGG 0.541839 1_3:-56584904 Msa0127340:CDS
GGTAAAACATTTACAATGGA+GGG 0.543571 1_3:-56585685 Msa0127340:CDS
AAATTCGTAAATTTGAATTG+TGG 0.546434 1_3:+56587043 None:intergenic
AGATCCTTAAACCAAGGAGG+AGG 0.548711 1_3:-56583625 Msa0127340:CDS
TGGAGGGAACACCGGAAGAG+AGG 0.549097 1_3:-56585669 Msa0127340:CDS
AAATTACCTGTAAGGGATGT+GGG 0.550103 1_3:+56584723 None:intergenic
TACAACACCAATGTCAGCTA+GGG 0.552576 1_3:-56583429 Msa0127340:CDS
GCACAAGGAGGTTCGCGGAT+GGG 0.555321 1_3:-56583374 Msa0127340:CDS
TACAGGTGGTCTCATGGCAA+TGG 0.555664 1_3:+56583661 None:intergenic
TAACGTACCGTTCATTTCCA+TGG 0.556666 1_3:+56586875 None:intergenic
AGCTGAGGGAGAAAGACTAA+AGG 0.558146 1_3:-56584815 Msa0127340:CDS
AAAATAGTTACACACCTAAG+TGG 0.562158 1_3:+56582883 None:intergenic
CTCCAAACTAAAGATCTCCT+TGG 0.562556 1_3:+56583326 None:intergenic
ATACAACACCAATGTCAGCT+AGG 0.563468 1_3:-56583430 Msa0127340:CDS
GTGGGATGCTTTGGATGCAA+GGG 0.565618 1_3:+56584741 None:intergenic
TTTGGTGGTATAGGAGATGG+TGG 0.567224 1_3:+56583782 None:intergenic
GCTAAGCTCATTAGCAGAGG+TGG 0.567999 1_3:+56585077 None:intergenic
TATAGTGAAGTGAACCACTT+AGG 0.568921 1_3:-56582897 Msa0127340:three_prime_UTR
ACCGGCAAACCTTGAAGTTG+AGG 0.570752 1_3:+56583544 None:intergenic
TGGTAAAACATTTACAATGG+AGG 0.571454 1_3:-56585686 Msa0127340:CDS
TTCTTCCTTCCGAAACACCA+TGG 0.573947 1_3:-56586892 Msa0127340:exon
ATTGCTACATCAGTATTGGA+TGG 0.574193 1_3:-56585748 Msa0127340:CDS
ACCAGAGGGGATAGCGTTTG+GGG 0.574922 1_3:+56586702 None:intergenic
GGTCTCTATTGCAGTTTAGG+TGG 0.577065 1_3:+56583151 None:intergenic
CTCAGGACGGAGTGTAGCAA+TGG 0.577174 1_3:+56583598 None:intergenic
CTTAGCAGGTAGCGAGCGTG+TGG 0.577481 1_3:-56584848 Msa0127340:CDS
GAAGGGACACAAGAAGTCCC+TGG 0.580973 1_3:-56585180 Msa0127340:CDS
CCATAAGGAGCCAGAGGGGT+CGG 0.582769 1_3:-56583502 Msa0127340:CDS
GAAAACAAAATTACCTGTAA+GGG 0.583129 1_3:+56584716 None:intergenic
AGCAGCCATAAGGAGCCAGA+GGG 0.589672 1_3:-56583507 Msa0127340:CDS
AAATGAAAACTCTGATTCGG+TGG 0.589702 1_3:-56586552 Msa0127340:CDS
TGCGTTGTTGATTGTACAGG+TGG 0.590033 1_3:+56583647 None:intergenic
AATTTGAATACCGACCCCTC+TGG 0.590267 1_3:+56583492 None:intergenic
ATTTACAATGGAGGGAACAC+CGG 0.594082 1_3:-56585677 Msa0127340:CDS
CAGCAGCCATAAGGAGCCAG+AGG 0.594403 1_3:-56583508 Msa0127340:CDS
TGCACAAGGAGGTTCGCGGA+TGG 0.595183 1_3:-56583375 Msa0127340:CDS
CACCCATCAAATGAATGGAA+AGG 0.596811 1_3:-56583753 Msa0127340:CDS
TGGATGAATCCTCTGAGCGC+AGG 0.597938 1_3:-56586104 Msa0127340:CDS
AGATTTGAAGGATTCAGTGG+TGG 0.599625 1_3:+56583842 None:intergenic
TCAATGACAACAAATACTGA+AGG 0.600193 1_3:-56583710 Msa0127340:CDS
TACATGCACAAGGAGGTTCG+CGG 0.602424 1_3:-56583379 Msa0127340:CDS
AACTGGTAAAACATTTACAA+TGG 0.603403 1_3:-56585689 Msa0127340:CDS
CTGGGCCGCTCTCAATTCCA+CGG 0.605670 1_3:+56584376 None:intergenic
TGATTGTACAGGTGGTCTCA+TGG 0.606357 1_3:+56583655 None:intergenic
CGAAACACCATGGAAATGAA+CGG 0.608231 1_3:-56586882 Msa0127340:intron
TTGTTGCGAGTAACAGTCGT+CGG 0.610511 1_3:-56584922 Msa0127340:CDS
TTTCAGATGTTGGCTCAGGA+CGG 0.610788 1_3:+56583585 None:intergenic
GAAGATAAGAGATCTTCTAG+TGG 0.612577 1_3:-56585542 Msa0127340:CDS
GGCAAAATTCAGTGAACACA+GGG 0.614042 1_3:+56584407 None:intergenic
CAACGCAGATCCTTAAACCA+AGG 0.614192 1_3:-56583631 Msa0127340:CDS
TGGAATTCATGAGAATTCGT+CGG 0.614398 1_3:-56586510 Msa0127340:CDS
TTCATTTCTCTCAGCCTGAG+AGG 0.616668 1_3:+56583302 None:intergenic
GGTGTTGTATCAACCGATGT+TGG 0.619578 1_3:+56583443 None:intergenic
CTCAATTCCACGGACACGAG+TGG 0.621107 1_3:+56584386 None:intergenic
TGGCAAAATTCAGTGAACAC+AGG 0.621801 1_3:+56584406 None:intergenic
CAACTGCGATTGCATTGCCA+AGG 0.621914 1_3:-56583343 Msa0127340:CDS
GATCCTTAAACCAAGGAGGA+GGG 0.623391 1_3:-56583624 Msa0127340:CDS
CAAACCTTGAAGTTGAGGTA+CGG 0.627799 1_3:+56583549 None:intergenic
CTGCTAAGTCTACTAGCCAA+AGG 0.628637 1_3:+56584863 None:intergenic
AATGAAATAATTGAACTCAA+GGG 0.631419 1_3:-56586072 Msa0127340:CDS
TCATTACATACCAATGGGAA+CGG 0.635970 1_3:+56585052 None:intergenic
TCTTCAAAGACCAAGAAGCA+GGG 0.636004 1_3:-56583687 Msa0127340:CDS
CTAAGTCTACTAGCCAAAGG+TGG 0.637012 1_3:+56584866 None:intergenic
GTAAAGCCGCCTGCGCTCAG+AGG 0.639883 1_3:+56586095 None:intergenic
CACGAGCTTCAACAAGTCCA+GGG 0.639920 1_3:+56585163 None:intergenic
TTCATGGAACAGAAGATGTG+TGG 0.643113 1_3:-56585140 Msa0127340:CDS
AGATAAAGCAAGCTGCAGAA+GGG 0.648109 1_3:-56585197 Msa0127340:CDS
TCAACTTCAAGGTTTGCCGG+TGG 0.648528 1_3:-56583542 Msa0127340:CDS
GGTGGTATAGGAGATGGTGG+AGG 0.650249 1_3:+56583785 None:intergenic
GCCAGCGATTAGACCAACAT+CGG 0.650740 1_3:-56583456 Msa0127340:CDS
GAGGGAACACCGGAAGAGAG+GGG 0.652125 1_3:-56585667 Msa0127340:CDS
AACTAAAGAACTCCTTAACA+AGG 0.653745 1_3:+56583232 None:intergenic
GAAAGGAAAATTCTGCCAGA+AGG 0.654137 1_3:-56583736 Msa0127340:CDS
TCATGGAACAGAAGATGTGT+GGG 0.657856 1_3:-56585139 Msa0127340:CDS
CGTGTCCGTGGAATTGAGAG+CGG 0.661396 1_3:-56584381 Msa0127340:CDS
GGCAGTCCAGTACATGCACA+AGG 0.661438 1_3:-56583389 Msa0127340:CDS
GATGTGTATTTATACGATGG+AGG 0.666355 1_3:+56583893 None:intergenic
GCTGCTAAGCTCATTAGCAG+AGG 0.678442 1_3:+56585074 None:intergenic
ATGAATCCTCTGAGCGCAGG+CGG 0.680069 1_3:-56586101 Msa0127340:CDS
CTTGAAGTTGAGGTACGGAG+TGG 0.684493 1_3:+56583554 None:intergenic
GCTCGCAAACAAGTAGACCT+CGG 0.689455 1_3:-56584354 Msa0127340:CDS
TTAGCAGGTAGCGAGCGTGT+GGG 0.691694 1_3:-56584847 Msa0127340:CDS
CGCAGATCCTTAAACCAAGG+AGG 0.691862 1_3:-56583628 Msa0127340:CDS
GCTGATGTGTATTTATACGA+TGG 0.693767 1_3:+56583890 None:intergenic
GCTTGTAAAGGATTCAGTCG+CGG 0.697271 1_3:+56586267 None:intergenic
GCAGCCATAAGGAGCCAGAG+GGG 0.700286 1_3:-56583506 Msa0127340:CDS
CCAAGTAAGTCCAAGCTCAG+CGG 0.704230 1_3:-56584442 Msa0127340:CDS
ACAACACCAATGTCAGCTAG+GGG 0.704579 1_3:-56583428 Msa0127340:CDS
TGGTCTAATCGCTGGCAATG+GGG 0.706900 1_3:+56583463 None:intergenic
ACGCACGCATTGATAAAACA+AGG 0.709729 1_3:+56583130 None:intergenic
GTTGCGAGTAACAGTCGTCG+GGG 0.710985 1_3:-56584920 Msa0127340:CDS
TTTAAGCCAGAAGATAACCA+AGG 0.714136 1_3:-56585895 Msa0127340:intron
GAATCAAGAACTTACCAGAG+GGG 0.735110 1_3:+56586689 None:intergenic
AGTCCAGTACATGCACAAGG+AGG 0.759982 1_3:-56583386 Msa0127340:CDS
TGTACTTGAACAGCTCACCG+AGG 0.771655 1_3:+56584337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTGTTTGG+TGG + chr1_3:56582910-56582929 None:intergenic 15.0%
!!! GAGATTTTTTTTTTTTTGTT+TGG + chr1_3:56582913-56582932 None:intergenic 15.0%
!! GTAGCAATAATTATTAATTA+GGG + chr1_3:56583257-56583276 None:intergenic 15.0%
!! TGTAGCAATAATTATTAATT+AGG + chr1_3:56583258-56583277 None:intergenic 15.0%
!!! ATTTTTTCAGTAAACTTATT+AGG - chr1_3:56583499-56583518 Msa0127340:CDS 15.0%
!!! TTTTTTCAGTAAACTTATTA+GGG - chr1_3:56583500-56583519 Msa0127340:CDS 15.0%
!! AATAATTGTTATCTAATACT+AGG - chr1_3:56583730-56583749 Msa0127340:CDS 15.0%
!! AATACATGATCAAATTTAAA+CGG + chr1_3:56583976-56583995 None:intergenic 15.0%
!!! TAAGTTTTTGTCATAATAAA+AGG - chr1_3:56585652-56585671 Msa0127340:CDS 15.0%
!! CTTCAATTTATAAAGAAAAA+AGG + chr1_3:56586830-56586849 None:intergenic 15.0%
!!! CTTTTTTCTTTATAAATTGA+AGG - chr1_3:56586828-56586847 Msa0127340:intron 15.0%
!! AAATTCGTAAATTTGAATTG+TGG + chr1_3:56582849-56582868 None:intergenic 20.0%
!! CTGAAAAAATTAAAAAACAC+AGG + chr1_3:56583489-56583508 None:intergenic 20.0%
!!! TTACAGTATTATAGGTTTTT+CGG - chr1_3:56583701-56583720 Msa0127340:CDS 20.0%
!! AATGAAATAATTGAACTCAA+GGG - chr1_3:56583817-56583836 Msa0127340:CDS 20.0%
!!! ATTATTTTATTATGATGCAG+AGG - chr1_3:56584095-56584114 Msa0127340:intron 20.0%
!! ATAATGAGTTTGTAAGAAAA+TGG - chr1_3:56584544-56584563 Msa0127340:intron 20.0%
!! AACAAATTTCAACTTAAGAT+TGG - chr1_3:56584669-56584688 Msa0127340:intron 20.0%
!! AGATAAAGAATTATGTACTA+AGG + chr1_3:56584873-56584892 None:intergenic 20.0%
!! AGGTATAAATGCAAATTTAA+AGG - chr1_3:56585786-56585805 Msa0127340:intron 20.0%
! AATTAACGAATGAATTGTGA+GGG + chr1_3:56583055-56583074 None:intergenic 25.0%
! AAATTAACGAATGAATTGTG+AGG + chr1_3:56583056-56583075 None:intergenic 25.0%
! AGTAAATGAAAACTCTGATT+CGG - chr1_3:56583334-56583353 Msa0127340:CDS 25.0%
!! TTGTGAATTTTTCTTGCATT+AGG - chr1_3:56583557-56583576 Msa0127340:CDS 25.0%
!! AGTTTGAGTTACAGTATTAT+AGG - chr1_3:56583693-56583712 Msa0127340:CDS 25.0%
!! TACAGTATTATAGGTTTTTC+GGG - chr1_3:56583702-56583721 Msa0127340:CDS 25.0%
! CAATGAAATAATTGAACTCA+AGG - chr1_3:56583816-56583835 Msa0127340:CDS 25.0%
! AATGTCTGTATATTTGCTTA+CGG - chr1_3:56584168-56584187 Msa0127340:CDS 25.0%
! AACTGGTAAAACATTTACAA+TGG - chr1_3:56584200-56584219 Msa0127340:CDS 25.0%
! GAACACTTGAAGAATTATTT+AGG - chr1_3:56584256-56584275 Msa0127340:intron 25.0%
! TGAGTTAAATGTTAGTATGT+TGG - chr1_3:56584311-56584330 Msa0127340:intron 25.0%
! AAGAATCATTACATACCAAT+GGG + chr1_3:56584845-56584864 None:intergenic 25.0%
! TAAGAATCATTACATACCAA+TGG + chr1_3:56584846-56584865 None:intergenic 25.0%
! AAGAAGTTATTGCATACTAT+AGG - chr1_3:56584914-56584933 Msa0127340:CDS 25.0%
! TACTATAGGTAATGAAAATG+TGG - chr1_3:56584928-56584947 Msa0127340:intron 25.0%
! ATTCATAAACAAGTCTCTTT+CGG - chr1_3:56585104-56585123 Msa0127340:CDS 25.0%
! GAAAACAAAATTACCTGTAA+GGG + chr1_3:56585176-56585195 None:intergenic 25.0%
! TACAAATGTTAATGACATGA+AGG + chr1_3:56585228-56585247 None:intergenic 25.0%
! TAGCTAATAATATTTGTCCT+GGG - chr1_3:56585384-56585403 Msa0127340:intron 25.0%
! GTAACAGTTAAAGAAAAACA+TGG + chr1_3:56585623-56585642 None:intergenic 25.0%
! TGATACATATGTGAATATGA+AGG + chr1_3:56585850-56585869 None:intergenic 25.0%
! CAATTATTTCATTTCAGAGT+TGG + chr1_3:56585880-56585899 None:intergenic 25.0%
! TGAAATGAAATAATTGTGAC+AGG - chr1_3:56585884-56585903 Msa0127340:intron 25.0%
ATTAACGAATGAATTGTGAG+GGG + chr1_3:56583054-56583073 None:intergenic 30.0%
GATGAAAACAGTATGTCTAA+TGG - chr1_3:56583359-56583378 Msa0127340:CDS 30.0%
TCAAAGACTTTCTTCAGAAT+GGG + chr1_3:56583422-56583441 None:intergenic 30.0%
ATCAAAGACTTTCTTCAGAA+TGG + chr1_3:56583423-56583442 None:intergenic 30.0%
ATGATTATTCACCTGAACTT+TGG + chr1_3:56583453-56583472 None:intergenic 30.0%
AGTTCAGGTGAATAATCATA+AGG - chr1_3:56583454-56583473 Msa0127340:CDS 30.0%
!! ACTCTTGAAAAGAAAGTATC+TGG - chr1_3:56583765-56583784 Msa0127340:CDS 30.0%
TTGAACTCAAGGGTAATATA+AGG - chr1_3:56583827-56583846 Msa0127340:CDS 30.0%
TGAACTCAAGGGTAATATAA+GGG - chr1_3:56583828-56583847 Msa0127340:CDS 30.0%
ACCTTTAAGTGAAAGTGAAA+AGG - chr1_3:56583867-56583886 Msa0127340:CDS 30.0%
GTTTACATCTGTTGTCAATT+TGG - chr1_3:56583897-56583916 Msa0127340:CDS 30.0%
ATTATACCTTGGTTATCTTC+TGG + chr1_3:56584003-56584022 None:intergenic 30.0%
GAAGATAACCAAGGTATAAT+AGG - chr1_3:56584003-56584022 Msa0127340:intron 30.0%
TTGTAACACCTATTATACCT+TGG + chr1_3:56584014-56584033 None:intergenic 30.0%
TGGTAAAACATTTACAATGG+AGG - chr1_3:56584203-56584222 Msa0127340:CDS 30.0%
GGTAAAACATTTACAATGGA+GGG - chr1_3:56584204-56584223 Msa0127340:CDS 30.0%
GTTAAATGTTAGTATGTTGG+AGG - chr1_3:56584314-56584333 Msa0127340:intron 30.0%
CAATTAGAGAAGAAGAACTA+AGG + chr1_3:56584404-56584423 None:intergenic 30.0%
! CTTAGTTCTTCTTCTCTAAT+TGG - chr1_3:56584402-56584421 Msa0127340:CDS 30.0%
AAAGAATTATGTACTAAGGC+TGG + chr1_3:56584869-56584888 None:intergenic 30.0%
CGAAAACAAAATTACCTGTA+AGG + chr1_3:56585177-56585196 None:intergenic 30.0%
AGTGCATTTCAAATCACAAA+GGG + chr1_3:56585340-56585359 None:intergenic 30.0%
GTAGCTAATAATATTTGTCC+TGG - chr1_3:56585383-56585402 Msa0127340:intron 30.0%
GTCATAATAAAAGGCAGAAA+AGG - chr1_3:56585661-56585680 Msa0127340:CDS 30.0%
AAAGGAAACAAAGAAATTGC+AGG - chr1_3:56585697-56585716 Msa0127340:CDS 30.0%
AACCTAACAGTTTCACTTAT+GGG + chr1_3:56585825-56585844 None:intergenic 30.0%
AAACCTAACAGTTTCACTTA+TGG + chr1_3:56585826-56585845 None:intergenic 30.0%
TGAAATAATTGTGACAGGTA+CGG - chr1_3:56585889-56585908 Msa0127340:intron 30.0%
AAATTGGTTATCCTTCTAAG+AGG + chr1_3:56586080-56586099 None:intergenic 30.0%
TTCCTTTCCATTCATTTGAT+GGG + chr1_3:56586141-56586160 None:intergenic 30.0%
TTTCCTTTCCATTCATTTGA+TGG + chr1_3:56586142-56586161 None:intergenic 30.0%
TCAATGACAACAAATACTGA+AGG - chr1_3:56586179-56586198 Msa0127340:intron 30.0%
AACTAAAGAACTCCTTAACA+AGG + chr1_3:56586660-56586679 None:intergenic 30.0%
!! TTAAGGAGTTCTTTAGTTTG+TGG - chr1_3:56586662-56586681 Msa0127340:intron 30.0%
! TGGCAAGAGTAATAATTTTC+AGG + chr1_3:56586721-56586740 None:intergenic 30.0%
! TGATATCTTGTTATGATCGT+CGG - chr1_3:56586868-56586887 Msa0127340:intron 30.0%
AAAATAGTTACACACCTAAG+TGG + chr1_3:56587009-56587028 None:intergenic 30.0%
TTTGAACGCTTTGATCTACA+GGG + chr1_3:56583110-56583129 None:intergenic 35.0%
ATTTGAACGCTTTGATCTAC+AGG + chr1_3:56583111-56583130 None:intergenic 35.0%
TGAATCAAGAACTTACCAGA+GGG + chr1_3:56583204-56583223 None:intergenic 35.0%
TTGAATCAAGAACTTACCAG+AGG + chr1_3:56583205-56583224 None:intergenic 35.0%
!! AAATGAAAACTCTGATTCGG+TGG - chr1_3:56583337-56583356 Msa0127340:CDS 35.0%
TGGAATTCATGAGAATTCGT+CGG - chr1_3:56583379-56583398 Msa0127340:CDS 35.0%
TGATTTGAGTACCAAAGTTC+AGG - chr1_3:56583439-56583458 Msa0127340:CDS 35.0%
CTTGCATTAGGATTTGAAGA+AGG - chr1_3:56583569-56583588 Msa0127340:CDS 35.0%
GAATAGAGTTCAAAACTTCG+AGG + chr1_3:56583647-56583666 None:intergenic 35.0%
TTGAACTCTATTCAGCTTCT+CGG - chr1_3:56583654-56583673 Msa0127340:CDS 35.0%
! GCCTTTTCACTTTCACTTAA+AGG + chr1_3:56583871-56583890 None:intergenic 35.0%
AGTGAAAGTGAAAAGGCAAA+CGG - chr1_3:56583874-56583893 Msa0127340:CDS 35.0%
TTTAAGCCAGAAGATAACCA+AGG - chr1_3:56583994-56584013 Msa0127340:intron 35.0%
ACCTATTGCTACATCAGTAT+TGG - chr1_3:56584137-56584156 Msa0127340:CDS 35.0%
TCCAATACTGATGTAGCAAT+AGG + chr1_3:56584141-56584160 None:intergenic 35.0%
! ATTGCTACATCAGTATTGGA+TGG - chr1_3:56584141-56584160 Msa0127340:CDS 35.0%
ATATTTGCTTACGGACAAAC+TGG - chr1_3:56584177-56584196 Msa0127340:CDS 35.0%
TAGGATATCTGAAGAGAGAA+AGG - chr1_3:56584275-56584294 Msa0127340:intron 35.0%
GAAGATAAGAGATCTTCTAG+TGG - chr1_3:56584347-56584366 Msa0127340:CDS 35.0%
CAAGCAAAGCAAGATCTAAT+CGG + chr1_3:56584524-56584543 None:intergenic 35.0%
TCATTACATACCAATGGGAA+CGG + chr1_3:56584840-56584859 None:intergenic 35.0%
CTCAACGAAAACATTGATCT+AGG - chr1_3:56584891-56584910 Msa0127340:CDS 35.0%
AAATTACCTGTAAGGGATGT+GGG + chr1_3:56585169-56585188 None:intergenic 35.0%
AAAATTACCTGTAAGGGATG+TGG + chr1_3:56585170-56585189 None:intergenic 35.0%
TTGAGTACATTCTTGCAGAA+TGG - chr1_3:56585201-56585220 Msa0127340:CDS 35.0%
CATATACTACAGAGCTCTTT+AGG - chr1_3:56585281-56585300 Msa0127340:intron 35.0%
CAGTGCATTTCAAATCACAA+AGG + chr1_3:56585341-56585360 None:intergenic 35.0%
CTACAACATGTGCTTTATAC+TGG - chr1_3:56585361-56585380 Msa0127340:intron 35.0%
! TGTTTCCTTTTCGTCATGTT+TGG + chr1_3:56585687-56585706 None:intergenic 35.0%
! GTCTGAGTTGTATAGTTTGT+AGG + chr1_3:56585727-56585746 None:intergenic 35.0%
ATACCATTGTAAAAGCCTTC+AGG - chr1_3:56585760-56585779 Msa0127340:CDS 35.0%
! TTTCCTGAAGGCTTTTACAA+TGG + chr1_3:56585766-56585785 None:intergenic 35.0%
TTGTAAAAGCCTTCAGGAAA+AGG - chr1_3:56585766-56585785 Msa0127340:CDS 35.0%
! GCATTTATACCTTTTCCTGA+AGG + chr1_3:56585778-56585797 None:intergenic 35.0%
TTCCCATAAGTGAAACTGTT+AGG - chr1_3:56585820-56585839 Msa0127340:intron 35.0%
GAAATAATTGTGACAGGTAC+GGG - chr1_3:56585890-56585909 Msa0127340:intron 35.0%
GATGTGTATTTATACGATGG+AGG + chr1_3:56585999-56586018 None:intergenic 35.0%
GCTGATGTGTATTTATACGA+TGG + chr1_3:56586002-56586021 None:intergenic 35.0%
! ATTTGATGGGTGTATCTCTT+TGG + chr1_3:56586128-56586147 None:intergenic 35.0%
AGATACACCCATCAAATGAA+TGG - chr1_3:56586131-56586150 Msa0127340:CDS 35.0%
GGAGTAGTAATTTCAGATGT+TGG + chr1_3:56586317-56586336 None:intergenic 35.0%
! ATGGCAAGAGTGATGATTTT+CGG + chr1_3:56586622-56586641 None:intergenic 35.0%
AAGGTCTATTGCAGTTTAGA+TGG + chr1_3:56586641-56586660 None:intergenic 35.0%
AACTGCAATAGACCTTGTTA+AGG - chr1_3:56586645-56586664 Msa0127340:intron 35.0%
!! TTGCTATTTCAACTCCTGTT+TGG - chr1_3:56586925-56586944 Msa0127340:five_prime_UTR 35.0%
!! TGCTATTTCAACTCCTGTTT+GGG - chr1_3:56586926-56586945 Msa0127340:five_prime_UTR 35.0%
TATAGTGAAGTGAACCACTT+AGG - chr1_3:56586992-56587011 Msa0127340:five_prime_UTR 35.0%
CGTTCATTTCCATGGTGTTT+CGG + chr1_3:56583009-56583028 None:intergenic 40.0%
CGAAACACCATGGAAATGAA+CGG - chr1_3:56583007-56583026 Msa0127340:three_prime_UTR 40.0%
TAACGTACCGTTCATTTCCA+TGG + chr1_3:56583017-56583036 None:intergenic 40.0%
GAATCAAGAACTTACCAGAG+GGG + chr1_3:56583203-56583222 None:intergenic 40.0%
CAAAACTTCGAGGCTTGTAA+AGG + chr1_3:56583637-56583656 None:intergenic 40.0%
GTGAAAGTGAAAAGGCAAAC+GGG - chr1_3:56583875-56583894 Msa0127340:CDS 40.0%
TTGAAGCTCATTCTCAAGAG+TGG + chr1_3:56583926-56583945 None:intergenic 40.0%
ATTTACAATGGAGGGAACAC+CGG - chr1_3:56584212-56584231 Msa0127340:CDS 40.0%
CTAAGGACTCACTTCTTAGT+AGG + chr1_3:56584387-56584406 None:intergenic 40.0%
CTTGAGAAATATCACTGACG+AGG - chr1_3:56584644-56584663 Msa0127340:intron 40.0%
AGATAAAGCAAGCTGCAGAA+GGG - chr1_3:56584692-56584711 Msa0127340:intron 40.0%
TTCATGGAACAGAAGATGTG+TGG - chr1_3:56584749-56584768 Msa0127340:CDS 40.0%
TCATGGAACAGAAGATGTGT+GGG - chr1_3:56584750-56584769 Msa0127340:CDS 40.0%
GTCGGGGAGAATTTAATCAA+TGG - chr1_3:56584985-56585004 Msa0127340:intron 40.0%
!!! AAAGGTGGCTCTTTGTTTTC+TGG + chr1_3:56585011-56585030 None:intergenic 40.0%
AGAAAACAAAGAGCCACCTT+TGG - chr1_3:56585010-56585029 Msa0127340:intron 40.0%
GGCAAAATTCAGTGAACACA+GGG + chr1_3:56585485-56585504 None:intergenic 40.0%
TGGCAAAATTCAGTGAACAC+AGG + chr1_3:56585486-56585505 None:intergenic 40.0%
GCTGTTCAAGTACAAGCAAA+TGG - chr1_3:56585561-56585580 Msa0127340:CDS 40.0%
AAAGGCCAAACATGACGAAA+AGG - chr1_3:56585679-56585698 Msa0127340:CDS 40.0%
! CTTCTGCTATTTGATTCTCC+AGG + chr1_3:56585917-56585936 None:intergenic 40.0%
TGGTGGTTTCTTATCTGTCA+TGG + chr1_3:56586033-56586052 None:intergenic 40.0%
AGATTTGAAGGATTCAGTGG+TGG + chr1_3:56586050-56586069 None:intergenic 40.0%
CTCAGATTTGAAGGATTCAG+TGG + chr1_3:56586053-56586072 None:intergenic 40.0%
!! AGAGGCATTCTCAGATTTGA+AGG + chr1_3:56586062-56586081 None:intergenic 40.0%
ATCTGAGAATGCCTCTTAGA+AGG - chr1_3:56586066-56586085 Msa0127340:CDS 40.0%
! GTGTATCTCTTTGGTGGTAT+AGG + chr1_3:56586119-56586138 None:intergenic 40.0%
CACCCATCAAATGAATGGAA+AGG - chr1_3:56586136-56586155 Msa0127340:CDS 40.0%
GAAAGGAAAATTCTGCCAGA+AGG - chr1_3:56586153-56586172 Msa0127340:intron 40.0%
TGTTGTCATTGAAGTCCTTC+TGG + chr1_3:56586171-56586190 None:intergenic 40.0%
TCTTCAAAGACCAAGAAGCA+GGG - chr1_3:56586202-56586221 Msa0127340:intron 40.0%
! ATCTGCGTTGTTGATTGTAC+AGG + chr1_3:56586248-56586267 None:intergenic 40.0%
!! GTAATTTCAGATGTTGGCTC+AGG + chr1_3:56586311-56586330 None:intergenic 40.0%
CAAACCTTGAAGTTGAGGTA+CGG + chr1_3:56586343-56586362 None:intergenic 40.0%
ATACAACACCAATGTCAGCT+AGG - chr1_3:56586459-56586478 Msa0127340:CDS 40.0%
TACAACACCAATGTCAGCTA+GGG - chr1_3:56586460-56586479 Msa0127340:CDS 40.0%
TGCCAAGGAGATCTTTAGTT+TGG - chr1_3:56586561-56586580 Msa0127340:CDS 40.0%
CTCCAAACTAAAGATCTCCT+TGG + chr1_3:56586566-56586585 None:intergenic 40.0%
CAAGGTCTCTATTGCAGTTT+AGG + chr1_3:56586744-56586763 None:intergenic 40.0%
! ACGCACGCATTGATAAAACA+AGG + chr1_3:56586762-56586781 None:intergenic 40.0%
TTTGATCCAACAACCCAAAC+AGG + chr1_3:56586942-56586961 None:intergenic 40.0%
TTCTTCCTTCCGAAACACCA+TGG - chr1_3:56582997-56583016 Msa0127340:three_prime_UTR 45.0%
CATTTCCATGGTGTTTCGGA+AGG + chr1_3:56583005-56583024 None:intergenic 45.0%
TCATGAGAATTCGTCGGATC+TGG - chr1_3:56583385-56583404 Msa0127340:CDS 45.0%
CATGAGAATTCGTCGGATCT+GGG - chr1_3:56583386-56583405 Msa0127340:CDS 45.0%
GCTTGTAAAGGATTCAGTCG+CGG + chr1_3:56583625-56583644 None:intergenic 45.0%
CTCTATTCAGCTTCTCGGTA+TGG - chr1_3:56583659-56583678 Msa0127340:CDS 45.0%
! CGGTTTCTTTGAAGAGTCTG+AGG + chr1_3:56583956-56583975 None:intergenic 45.0%
TAGTTAACACCCCTCTCTTC+CGG + chr1_3:56584234-56584253 None:intergenic 45.0%
GACTCACTTCTTAGTAGGCT+GGG + chr1_3:56584382-56584401 None:intergenic 45.0%
GAGATAAAGCAAGCTGCAGA+AGG - chr1_3:56584691-56584710 Msa0127340:intron 45.0%
CTTGTTGAAGCTCGTGTTCA+TGG - chr1_3:56584733-56584752 Msa0127340:CDS 45.0%
GGAAACAGAGTCAGATCTGT+TGG - chr1_3:56584787-56584806 Msa0127340:CDS 45.0%
TTGTTGCGAGTAACAGTCGT+CGG - chr1_3:56584967-56584986 Msa0127340:intron 45.0%
CTAAGTCTACTAGCCAAAGG+TGG + chr1_3:56585026-56585045 None:intergenic 45.0%
CTGCTAAGTCTACTAGCCAA+AGG + chr1_3:56585029-56585048 None:intergenic 45.0%
CTTTGGCTAGTAGACTTAGC+AGG - chr1_3:56585027-56585046 Msa0127340:intron 45.0%
TGTGGGAAAAACTGAAGCTG+AGG - chr1_3:56585059-56585078 Msa0127340:intron 45.0%
GTGGGAAAAACTGAAGCTGA+GGG - chr1_3:56585060-56585079 Msa0127340:intron 45.0%
AGCTGAGGGAGAAAGACTAA+AGG - chr1_3:56585074-56585093 Msa0127340:CDS 45.0%
AACAAGTCTCTTTCGGCACT+TGG - chr1_3:56585111-56585130 Msa0127340:CDS 45.0%
ACTACAGAGCTCTTTAGGTG+AGG - chr1_3:56585286-56585305 Msa0127340:intron 45.0%
TTGTCCTGGGATTGAAATGC+AGG - chr1_3:56585397-56585416 Msa0127340:intron 45.0%
!! AGATGGTGGAGGCAAGAAAT+TGG + chr1_3:56586096-56586115 None:intergenic 45.0%
! TTTGGTGGTATAGGAGATGG+TGG + chr1_3:56586110-56586129 None:intergenic 45.0%
! CTCTTTGGTGGTATAGGAGA+TGG + chr1_3:56586113-56586132 None:intergenic 45.0%
! TGATGGGTGTATCTCTTTGG+TGG + chr1_3:56586125-56586144 None:intergenic 45.0%
GTCTTCAAAGACCAAGAAGC+AGG - chr1_3:56586201-56586220 Msa0127340:intron 45.0%
TGATTGTACAGGTGGTCTCA+TGG + chr1_3:56586237-56586256 None:intergenic 45.0%
! TGCGTTGTTGATTGTACAGG+TGG + chr1_3:56586245-56586264 None:intergenic 45.0%
CAACGCAGATCCTTAAACCA+AGG - chr1_3:56586258-56586277 Msa0127340:CDS 45.0%
AGATCCTTAAACCAAGGAGG+AGG - chr1_3:56586264-56586283 Msa0127340:CDS 45.0%
GATCCTTAAACCAAGGAGGA+GGG - chr1_3:56586265-56586284 Msa0127340:CDS 45.0%
!! TTTCAGATGTTGGCTCAGGA+CGG + chr1_3:56586307-56586326 None:intergenic 45.0%
ACCTCAACTTCAAGGTTTGC+CGG - chr1_3:56586344-56586363 Msa0127340:intron 45.0%
AATTTGAATACCGACCCCTC+TGG + chr1_3:56586400-56586419 None:intergenic 45.0%
TTGGTCTAATCGCTGGCAAT+GGG + chr1_3:56586430-56586449 None:intergenic 45.0%
! GGTGTTGTATCAACCGATGT+TGG + chr1_3:56586449-56586468 None:intergenic 45.0%
ACAACACCAATGTCAGCTAG+GGG - chr1_3:56586461-56586480 Msa0127340:CDS 45.0%
TAGGGGCAGCAGTAAGTTTA+TGG - chr1_3:56586478-56586497 Msa0127340:CDS 45.0%
AGGGGCAGCAGTAAGTTTAT+GGG - chr1_3:56586479-56586498 Msa0127340:CDS 45.0%
!! CTTTAGTTTGGAGTCCTCTC+AGG - chr1_3:56586573-56586592 Msa0127340:CDS 45.0%
TTCATTTCTCTCAGCCTGAG+AGG + chr1_3:56586590-56586609 None:intergenic 45.0%
! GCAAGAGTGATGATTTTCGG+TGG + chr1_3:56586619-56586638 None:intergenic 45.0%
!! TTAGTTTGTGGAGTCCTCTC+AGG - chr1_3:56586674-56586693 Msa0127340:intron 45.0%
! TTTTCATCTCTCAGCCTGAG+AGG + chr1_3:56586691-56586710 None:intergenic 45.0%
GGTCTCTATTGCAGTTTAGG+TGG + chr1_3:56586741-56586760 None:intergenic 45.0%
!! TCAACTCCTGTTTGGGTTGT+TGG - chr1_3:56586933-56586952 Msa0127340:five_prime_UTR 45.0%
!!! TATTTTAAAATTTGAAATAA+AGG + chr1_3:56584445-56584464 None:intergenic 5.0%
TACCAGAGGGGATAGCGTTT+GGG + chr1_3:56583191-56583210 None:intergenic 50.0%
TTACCAGAGGGGATAGCGTT+TGG + chr1_3:56583192-56583211 None:intergenic 50.0%
GCTTACGGACAAACTGGAAC+TGG - chr1_3:56584183-56584202 Msa0127340:CDS 50.0%
GGACTCACTTCTTAGTAGGC+TGG + chr1_3:56584383-56584402 None:intergenic 50.0%
CACGAGCTTCAACAAGTCCA+GGG + chr1_3:56584729-56584748 None:intergenic 50.0%
ACACGAGCTTCAACAAGTCC+AGG + chr1_3:56584730-56584749 None:intergenic 50.0%
GTGTGGGAATTGCTCAAGAC+TGG - chr1_3:56584766-56584785 Msa0127340:CDS 50.0%
GCTAAGCTCATTAGCAGAGG+TGG + chr1_3:56584815-56584834 None:intergenic 50.0%
GCTGCTAAGCTCATTAGCAG+AGG + chr1_3:56584818-56584837 None:intergenic 50.0%
TGTTGCGAGTAACAGTCGTC+GGG - chr1_3:56584968-56584987 Msa0127340:intron 50.0%
! GTGGGATGCTTTGGATGCAA+GGG + chr1_3:56585151-56585170 None:intergenic 50.0%
! TGTGGGATGCTTTGGATGCA+AGG + chr1_3:56585152-56585171 None:intergenic 50.0%
GTAAGGGATGTGGGATGCTT+TGG + chr1_3:56585160-56585179 None:intergenic 50.0%
AAGCATCCCACATCCCTTAC+AGG - chr1_3:56585160-56585179 Msa0127340:CDS 50.0%
TCCTGGGATTGAAATGCAGG+AGG - chr1_3:56585400-56585419 Msa0127340:intron 50.0%
TCCTCCTGCATTTCAATCCC+AGG + chr1_3:56585404-56585423 None:intergenic 50.0%
CCAAGTAAGTCCAAGCTCAG+CGG - chr1_3:56585447-56585466 Msa0127340:intron 50.0%
! AATTTTGCCACTCGTGTCCG+TGG - chr1_3:56585496-56585515 Msa0127340:intron 50.0%
GGTCTACTTGTTTGCGAGCT+GGG + chr1_3:56585534-56585553 None:intergenic 50.0%
AGGTCTACTTGTTTGCGAGC+TGG + chr1_3:56585535-56585554 None:intergenic 50.0%
GCTCGCAAACAAGTAGACCT+CGG - chr1_3:56585535-56585554 Msa0127340:CDS 50.0%
TGTACTTGAACAGCTCACCG+AGG + chr1_3:56585555-56585574 None:intergenic 50.0%
TACAGGTGGTCTCATGGCAA+TGG + chr1_3:56586231-56586250 None:intergenic 50.0%
CGCAGATCCTTAAACCAAGG+AGG - chr1_3:56586261-56586280 Msa0127340:CDS 50.0%
AGACCCTCCTCCTTGGTTTA+AGG + chr1_3:56586271-56586290 None:intergenic 50.0%
CTTGAAGTTGAGGTACGGAG+TGG + chr1_3:56586338-56586357 None:intergenic 50.0%
CACTCCGTACCTCAACTTCA+AGG - chr1_3:56586336-56586355 Msa0127340:intron 50.0%
ACCGGCAAACCTTGAAGTTG+AGG + chr1_3:56586348-56586367 None:intergenic 50.0%
TCAACTTCAAGGTTTGCCGG+TGG - chr1_3:56586347-56586366 Msa0127340:intron 50.0%
TGCTGATACACTGCTTCCAC+CGG + chr1_3:56586366-56586385 None:intergenic 50.0%
GCAGTGTATCAGCAGCCATA+AGG - chr1_3:56586372-56586391 Msa0127340:intron 50.0%
TGGTCTAATCGCTGGCAATG+GGG + chr1_3:56586429-56586448 None:intergenic 50.0%
! GTTGGTCTAATCGCTGGCAA+TGG + chr1_3:56586431-56586450 None:intergenic 50.0%
GCCAGCGATTAGACCAACAT+CGG - chr1_3:56586433-56586452 Msa0127340:intron 50.0%
! ACCGATGTTGGTCTAATCGC+TGG + chr1_3:56586437-56586456 None:intergenic 50.0%
AGTCCAGTACATGCACAAGG+AGG - chr1_3:56586503-56586522 Msa0127340:CDS 50.0%
GAACCTCCTTGTGCATGTAC+TGG + chr1_3:56586509-56586528 None:intergenic 50.0%
TACATGCACAAGGAGGTTCG+CGG - chr1_3:56586510-56586529 Msa0127340:CDS 50.0%
CTTGGCAATGCAATCGCAGT+TGG + chr1_3:56586548-56586567 None:intergenic 50.0%
CAACTGCGATTGCATTGCCA+AGG - chr1_3:56586546-56586565 Msa0127340:CDS 50.0%
ACCAGAGGGGATAGCGTTTG+GGG + chr1_3:56583190-56583209 None:intergenic 55.0%
TGGATGAATCCTCTGAGCGC+AGG - chr1_3:56583785-56583804 Msa0127340:CDS 55.0%
ATGAATCCTCTGAGCGCAGG+CGG - chr1_3:56583788-56583807 Msa0127340:CDS 55.0%
GAAGGGACACAAGAAGTCCC+TGG - chr1_3:56584709-56584728 Msa0127340:intron 55.0%
AGCTTAGCAGCCGTTCCCAT+TGG - chr1_3:56584827-56584846 Msa0127340:CDS 55.0%
GTTGCGAGTAACAGTCGTCG+GGG - chr1_3:56584969-56584988 Msa0127340:intron 55.0%
TTAGCAGGTAGCGAGCGTGT+GGG - chr1_3:56585042-56585061 Msa0127340:intron 55.0%
CCGCTGAGCTTGGACTTACT+TGG + chr1_3:56585450-56585469 None:intergenic 55.0%
! AGTCCAAGCTCAGCGGACTT+AGG - chr1_3:56585454-56585473 Msa0127340:intron 55.0%
TCTCCTAAGTCCGCTGAGCT+TGG + chr1_3:56585460-56585479 None:intergenic 55.0%
CTCAATTCCACGGACACGAG+TGG + chr1_3:56585506-56585525 None:intergenic 55.0%
CGTGTCCGTGGAATTGAGAG+CGG - chr1_3:56585508-56585527 Msa0127340:intron 55.0%
ATTGTGACAGGTACGGGACC+TGG - chr1_3:56585896-56585915 Msa0127340:CDS 55.0%
! GGTGGTATAGGAGATGGTGG+AGG + chr1_3:56586107-56586126 None:intergenic 55.0%
GCAATGGAAGCCCTGCTTCT+TGG + chr1_3:56586215-56586234 None:intergenic 55.0%
CTCAGGACGGAGTGTAGCAA+TGG + chr1_3:56586294-56586313 None:intergenic 55.0%
AGCAGCCATAAGGAGCCAGA+GGG - chr1_3:56586382-56586401 Msa0127340:intron 55.0%
GGCAGTCCAGTACATGCACA+AGG - chr1_3:56586500-56586519 Msa0127340:CDS 55.0%
TCCCCAAACGCTATCCCCTC+TGG - chr1_3:56583186-56583205 Msa0127340:three_prime_UTR 60.0%
TGGAGGGAACACCGGAAGAG+AGG - chr1_3:56584220-56584239 Msa0127340:intron 60.0%
GGAGGGAACACCGGAAGAGA+GGG - chr1_3:56584221-56584240 Msa0127340:intron 60.0%
GAGGGAACACCGGAAGAGAG+GGG - chr1_3:56584222-56584241 Msa0127340:intron 60.0%
CTTAGCAGGTAGCGAGCGTG+TGG - chr1_3:56585041-56585060 Msa0127340:intron 60.0%
CTGGGCCGCTCTCAATTCCA+CGG + chr1_3:56585516-56585535 None:intergenic 60.0%
GCAATGGAGACCCTCCTCCT+TGG + chr1_3:56586278-56586297 None:intergenic 60.0%
CAGCAGCCATAAGGAGCCAG+AGG - chr1_3:56586381-56586400 Msa0127340:intron 60.0%
GCAGCCATAAGGAGCCAGAG+GGG - chr1_3:56586383-56586402 Msa0127340:intron 60.0%
CCATAAGGAGCCAGAGGGGT+CGG - chr1_3:56586387-56586406 Msa0127340:intron 60.0%
CTGCTGCCCCTAGCTGACAT+TGG + chr1_3:56586470-56586489 None:intergenic 60.0%
TGCACAAGGAGGTTCGCGGA+TGG - chr1_3:56586514-56586533 Msa0127340:CDS 60.0%
GCACAAGGAGGTTCGCGGAT+GGG - chr1_3:56586515-56586534 Msa0127340:CDS 60.0%
AAGGAGGTTCGCGGATGGGT+AGG - chr1_3:56586519-56586538 Msa0127340:CDS 60.0%
GTAAAGCCGCCTGCGCTCAG+AGG + chr1_3:56583797-56583816 None:intergenic 65.0%
! CCGACCCCTCTGGCTCCTTA+TGG + chr1_3:56586390-56586409 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56582841 56587070 56582841 ID=Msa0127340;Name=Msa0127340
chr1_3 mRNA 56582841 56587070 56582841 ID=Msa0127340-mRNA-1;Parent=Msa0127340;Name=Msa0127340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|1|1|12|415|778
chr1_3 exon 56582841 56584005 56582841 ID=Msa0127340-mRNA-1:exon:17885;Parent=Msa0127340-mRNA-1
chr1_3 exon 56584124 56584237 56584124 ID=Msa0127340-mRNA-1:exon:17884;Parent=Msa0127340-mRNA-1
chr1_3 exon 56584329 56584492 56584329 ID=Msa0127340-mRNA-1:exon:17883;Parent=Msa0127340-mRNA-1
chr1_3 exon 56584609 56584646 56584609 ID=Msa0127340-mRNA-1:exon:17882;Parent=Msa0127340-mRNA-1
chr1_3 exon 56584730 56584945 56584730 ID=Msa0127340-mRNA-1:exon:17881;Parent=Msa0127340-mRNA-1
chr1_3 exon 56585063 56585224 56585063 ID=Msa0127340-mRNA-1:exon:17880;Parent=Msa0127340-mRNA-1
chr1_3 exon 56585517 56585796 56585517 ID=Msa0127340-mRNA-1:exon:17879;Parent=Msa0127340-mRNA-1
chr1_3 exon 56585896 56586159 56585896 ID=Msa0127340-mRNA-1:exon:17878;Parent=Msa0127340-mRNA-1
chr1_3 exon 56586236 56586332 56586236 ID=Msa0127340-mRNA-1:exon:17877;Parent=Msa0127340-mRNA-1
chr1_3 exon 56586451 56586596 56586451 ID=Msa0127340-mRNA-1:exon:17876;Parent=Msa0127340-mRNA-1
chr1_3 exon 56586704 56586796 56586704 ID=Msa0127340-mRNA-1:exon:17875;Parent=Msa0127340-mRNA-1
chr1_3 exon 56586883 56587070 56586883 ID=Msa0127340-mRNA-1:exon:17874;Parent=Msa0127340-mRNA-1
chr1_3 five_prime_UTR 56586896 56587070 56586896 ID=Msa0127340-mRNA-1:five_prime_utr;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56586883 56586895 56586883 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56586704 56586796 56586704 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56586451 56586596 56586451 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56586236 56586332 56586236 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56585896 56586159 56585896 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56585517 56585796 56585517 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56585063 56585224 56585063 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56584730 56584945 56584730 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56584609 56584646 56584609 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56584329 56584492 56584329 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56584124 56584237 56584124 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 CDS 56583256 56584005 56583256 ID=Msa0127340-mRNA-1:cds;Parent=Msa0127340-mRNA-1
chr1_3 three_prime_UTR 56582841 56583255 56582841 ID=Msa0127340-mRNA-1:three_prime_utr;Parent=Msa0127340-mRNA-1
Gene Sequence

>Msa0127340

ATGGAAATGAACGATCAAAGCGTTCAAATTCAAATGCTCGCTGAGAAATTTCAACTCTTCGTACGTGATTGCGAACTCAAGCAATCCCCAAACGCTATCCCCTCTGATAATGATGAATCAAAGAAAGTAAATGAAAACTCTGATTCGGTGGATGAAAACAGTATGTCTAATGGAATTCATGAGAATTCGTCGGATCTGGGTCATACGCTTCCCATTCTGAAGAAAGTCTTTGATTTGAGTACCAAAGTTCAGGATTTGAAGAAGGAGCATTTAGCGTTATCTGATCATGTGAAAACCGCGACTGAATCCTTTACAAGCCTCGAAGTTTTGAACTCTATTCAGCTTCTCGGTTCTGAATATGAACTCTTGAAAAGAAAGTATCTGGATGAATCCTCTGAGCGCAGGCGGCTTTACAATGAAATAATTGAACTCAAGGGTAATATAAGGGTTTTCTGCAGATGCAGACCTTTAAGTGAAAGTGAAAAGGCAAACGGGTTTACATCTGTTGTCAATTTGGAATCCACTCTTGAGAATGAGCTTCAAGTCATCTCCTCAGACTCTTCAAAGAAACCGTTTAAATTTGATCATGTATTTAAGCCAGAAGATAACCAAGAGGCTGTTTTTTCTCAAACTAAACCTATTGCTACATCAGTATTGGATGGCTTTAATGTCTGTATATTTGCTTACGGACAAACTGGAACTGGTAAAACATTTACAATGGAGGGAACACCGGAAGAGAGGGGTGTTAACTACAGAACACTTGAAGAATTATTTAGGATATCTGAAGAGAGAAAGGTTGTAATGAAGTATGAGTTAAATGTTAGTATGTTGGAGGTTTATAATGAGAAGATAAGAGATCTTCTAGTGGAAAATTCTGCCCAGCCTACTAAGAAATTGGAGATAAAGCAAGCTGCAGAAGGGACACAAGAAGTCCCTGGACTTGTTGAAGCTCGTGTTCATGGAACAGAAGATGTGTGGGAATTGCTCAAGACTGGAAACAGAGTCAGATCTGTTGGATCCACCTCTGCTAATGAGCTTAGCAGCCGTTCCCATTGCTTGTTGCGAGTAACAGTCGTCGGGGAGAATTTAATCAATGGCCAGAAAACAAAGAGCCACCTTTGGCTAGTAGACTTAGCAGGTAGCGAGCGTGTGGGAAAAACTGAAGCTGAGGGAGAAAGACTAAAGGAATCTCAATTCATAAACAAGTCTCTTTCGGCACTTGGTGATGTTATTTCTGCCCTTGCATCCAAAGCATCCCACATCCCTTACAGAAACTCGAAGCTCACTCATATACTACAGAGCTCTTTAGGAGGAGATTGTAAAACATTAATGTTTGTCCAAGTAAGTCCAAGCTCAGCGGACTTAGGAGAGACCCTGTGTTCACTGAATTTTGCCACTCGTGTCCGTGGAATTGAGAGCGGCCCAGCTCGCAAACAAGTAGACCTCGGTGAGCTGTTCAAGTACAAGCAAATGGCAGAAAAGGCCAAACATGACGAAAAGGAAACAAAGAAATTGCAGGATAGCCTACAAACTATACAACTCAGACTTGCTGCGAGAGAATACCATTGTAAAAGCCTTCAGGAAAAGGTACGGGACCTGGAGAATCAAATAGCAGAAGAAAGAAAAACTAGACTAAAGCAAGAAAGTAGATCACTTGCTGCTGTTTCATCTCAACAACCTCCATCGTATAAATACACATCAGCTCATAAAACCATGACAGATAAGAAACCACCACTGAATCCTTCAAATCTGAGAATGCCTCTTAGAAGGATAACCAATTTCTTGCCTCCACCATCTCCTATACCACCAAAGAGATACACCCATCAAATGAATGGAAAGGAAAATTCTGCCAGAAGGACTTCAATGACAACAAATACTGAAGGTCTTCAAAGACCAAGAAGCAGGGCTTCCATTGCCATGAGACCACCTGTACAATCAACAACGCAGATCCTTAAACCAAGGAGGAGGGTCTCCATTGCTACACTCCGTCCTGAGCCAACATCTGAAATTACTACTCCACTCCGTACCTCAACTTCAAGGTTTGCCGGTGGAAGCAGTGTATCAGCAGCCATAAGGAGCCAGAGGGGTCGGTATTCAAATTTGTTCGCCCCATTGCCAGCGATTAGACCAACATCGGTTGATACAACACCAATGTCAGCTAGGGGCAGCAGTAAGTTTATGGGCAGTCCAGTACATGCACAAGGAGGTTCGCGGATGGGTAGGCATCCAACTGCGATTGCATTGCCAAGGAGATCTTTAGTTTGGAGTCCTCTCAGGCTGAGAGAAATGAAAAGTAGCCACCGAAAATCATCACTCTTGCCATCTAAACTGCAATAG

Protein sequence

>Msa0127340

MEMNDQSVQIQMLAEKFQLFVRDCELKQSPNAIPSDNDESKKVNENSDSVDENSMSNGIHENSSDLGHTLPILKKVFDLSTKVQDLKKEHLALSDHVKTATESFTSLEVLNSIQLLGSEYELLKRKYLDESSERRRLYNEIIELKGNIRVFCRCRPLSESEKANGFTSVVNLESTLENELQVISSDSSKKPFKFDHVFKPEDNQEAVFSQTKPIATSVLDGFNVCIFAYGQTGTGKTFTMEGTPEERGVNYRTLEELFRISEERKVVMKYELNVSMLEVYNEKIRDLLVENSAQPTKKLEIKQAAEGTQEVPGLVEARVHGTEDVWELLKTGNRVRSVGSTSANELSSRSHCLLRVTVVGENLINGQKTKSHLWLVDLAGSERVGKTEAEGERLKESQFINKSLSALGDVISALASKASHIPYRNSKLTHILQSSLGGDCKTLMFVQVSPSSADLGETLCSLNFATRVRGIESGPARKQVDLGELFKYKQMAEKAKHDEKETKKLQDSLQTIQLRLAAREYHCKSLQEKVRDLENQIAEERKTRLKQESRSLAAVSSQQPPSYKYTSAHKTMTDKKPPLNPSNLRMPLRRITNFLPPPSPIPPKRYTHQMNGKENSARRTSMTTNTEGLQRPRSRASIAMRPPVQSTTQILKPRRRVSIATLRPEPTSEITTPLRTSTSRFAGGSSVSAAIRSQRGRYSNLFAPLPAIRPTSVDTTPMSARGSSKFMGSPVHAQGGSRMGRHPTAIALPRRSLVWSPLRLREMKSSHRKSSLLPSKLQ*