AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139060 MtrunA17_Chr5g0446191 56.554 534 164 10 26 499 20 545 0.0 533
Msa0139060 MtrunA17_Chr5g0446231 55.229 545 169 13 22 499 1 537 0.0 528
Msa0139060 MtrunA17_Chr5g0446171 72.917 144 38 1 1 143 1 144 9.26e-65 210
Msa0139060 MtrunA17_Chr4g0012551 34.586 266 146 9 219 478 1 244 1.08e-35 133
Msa0139060 MtrunA17_Chr5g0413371 61.207 116 37 1 18 133 2 109 5.17e-34 135
Msa0139060 MtrunA17_Chr5g0445861 40.761 184 65 7 1 143 1 181 1.30e-24 106
Msa0139060 MtrunA17_Chr5g0445831 42.169 166 67 3 1 144 1 159 1.30e-24 106
Msa0139060 MtrunA17_Chr5g0445771 45.161 155 67 3 4 143 2 153 1.96e-24 106
Msa0139060 MtrunA17_Chr6g0462331 28.239 301 180 10 221 500 8 293 1.08e-23 103
Msa0139060 MtrunA17_Chr5g0445881 36.816 201 63 5 1 144 1 194 1.93e-22 100
Msa0139060 MtrunA17_Chr6g0477621 37.333 150 85 3 328 474 11 154 1.28e-19 89.0
Msa0139060 MtrunA17_Chr3g0085601 29.442 197 120 6 304 494 2 185 2.65e-18 85.9
Msa0139060 MtrunA17_Chr1g0174681 37.037 108 61 2 371 478 11 111 7.82e-18 83.6
Msa0139060 MtrunA17_Chr7g0226131 27.083 240 156 9 216 448 6 233 4.35e-17 80.5
Msa0139060 MtrunA17_Chr5g0445961 32.184 174 83 4 1 142 1 171 3.95e-14 75.1
Msa0139060 MtrunA17_Chr5g0416551 29.213 178 111 5 301 474 1 167 4.69e-14 71.2
Msa0139060 MtrunA17_Chr5g0446181 40.141 142 62 4 1 126 1 135 4.17e-13 70.9
Msa0139060 MtrunA17_Chr7g0215391 28.571 245 150 9 223 451 19 254 1.60e-12 69.7
Msa0139060 MtrunA17_Chr1g0194781 28.571 245 150 9 223 451 19 254 1.60e-12 69.7
Msa0139060 MtrunA17_Chr1g0202531 27.972 286 178 12 223 489 26 302 8.47e-12 67.4
Msa0139060 MtrunA17_Chr5g0445811 36.842 190 49 8 1 144 1 165 1.58e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAACCCAGGTTCGATTT+TGG 0.201779 1_3:+72269712 None:intergenic
GTTCTTTGCAAATGCATATC+TGG 0.205513 1_3:-72266724 Msa0139060:CDS
AGAGCACTATTCGAAGTTTC+TGG 0.226886 1_3:-72266886 Msa0139060:CDS
AAAATTATCAATGGATTGTT+TGG 0.246344 1_3:-72266615 Msa0139060:CDS
TTATAGTTCCCATCTTCTTT+AGG 0.261328 1_3:+72266696 None:intergenic
TTATGTCATTTAAGTTATAA+TGG 0.279777 1_3:+72266131 None:intergenic
AGGGTTGGGGTTGCCCATTT+TGG 0.308578 1_3:-72268275 Msa0139060:CDS
GTACAAATTCTCAGATATTC+AGG 0.317285 1_3:-72266820 Msa0139060:CDS
CATTGACTGGTTCGCCCTTA+AGG 0.319854 1_3:+72266334 None:intergenic
TAGAGGGTTCACGTCCAAAA+TGG 0.327794 1_3:+72268261 None:intergenic
CTTCCTAACCCAATCGGCCT+CGG 0.330220 1_3:+72266500 None:intergenic
GTCTCCTAGCAAATGACCTT+CGG 0.339559 1_3:-72266305 Msa0139060:CDS
CTTGATAACTGCAATCCTTA+AGG 0.357132 1_3:-72266349 Msa0139060:CDS
AAGAAAGAAGAATAATGAAT+TGG 0.367091 1_3:-72269375 Msa0139060:CDS
CTTGGAAGACATGAGCATTC+AGG 0.367632 1_3:-72269672 Msa0139060:CDS
TCTTCAAGAGAAGTTTGAAT+TGG 0.370237 1_3:-72269546 Msa0139060:CDS
ATGCTTTAGCAGTGGGTGTC+AGG 0.376463 1_3:+72266442 None:intergenic
GTGCAGGCCCGAGGCCGATT+GGG 0.381424 1_3:-72266508 Msa0139060:CDS
TGTGCAGGCCCGAGGCCGAT+TGG 0.385248 1_3:-72266509 Msa0139060:CDS
GAGCATTCAGGAACTTGTTT+CGG 0.395229 1_3:-72269660 Msa0139060:CDS
CCTCTATTACCTCTTTATGT+AGG 0.400563 1_3:-72268244 Msa0139060:CDS
AAATTATCAATGGATTGTTT+GGG 0.400666 1_3:-72266614 Msa0139060:CDS
TTGATAACTGCAATCCTTAA+GGG 0.407477 1_3:-72266348 Msa0139060:CDS
GGGATCTAACATTGATCATC+AGG 0.407482 1_3:-72266547 Msa0139060:CDS
CGGTGTCGCGTACAGCGTTT+CGG 0.412285 1_3:-72269640 Msa0139060:CDS
TCTATCCATTTCACGGTGAC+TGG 0.412297 1_3:+72266162 None:intergenic
TTCACGGTGACTGGTCTAGA+TGG 0.418534 1_3:+72266171 None:intergenic
CTAGACCAGTCACCGTGAAA+TGG 0.419439 1_3:-72266167 Msa0139060:CDS
ATCTTTCTTCCTAACCCAAT+CGG 0.420963 1_3:+72266494 None:intergenic
ACAGTTTGATGAACTTGAAA+AGG 0.422370 1_3:-72269612 Msa0139060:CDS
TCTCCTAGCAAATGACCTTC+GGG 0.429048 1_3:-72266304 Msa0139060:CDS
AAGAAAACTAGTTTAGTTGA+AGG 0.432212 1_3:-72269416 Msa0139060:CDS
AGGAGACGGCCGACATTGAC+TGG 0.436580 1_3:+72266321 None:intergenic
CTTAAGGATTGCAGTTATCA+AGG 0.437445 1_3:+72266350 None:intergenic
GGCCCGAGGCCGATTGGGTT+AGG 0.439711 1_3:-72266503 Msa0139060:CDS
TTTCATGAGAAAATTATCAA+TGG 0.445312 1_3:-72266624 Msa0139060:CDS
ATGATCAATGTTAGATCCCT+TGG 0.447829 1_3:+72266551 None:intergenic
TTCCTAACCCAATCGGCCTC+GGG 0.448443 1_3:+72266501 None:intergenic
CTGGGTCCTCCTAAAGAAGA+TGG 0.457044 1_3:-72266705 Msa0139060:CDS
ACTTCGAATAGTGCTCTTGA+TGG 0.457825 1_3:+72266892 None:intergenic
GAACTAAAAGAGCTAGGGTT+GGG 0.458419 1_3:-72268289 Msa0139060:CDS
AGAGGGTTCACGTCCAAAAT+GGG 0.465355 1_3:+72268262 None:intergenic
AGAATTTGTACCCTTCCAAC+TGG 0.471268 1_3:+72266832 None:intergenic
GAAGAATAATGAATTGGAGT+TGG 0.472786 1_3:-72269369 Msa0139060:CDS
CCTACATAAAGAGGTAATAG+AGG 0.474454 1_3:+72268244 None:intergenic
TCTTGCCGCTCATCTACTAT+AGG 0.475363 1_3:+72268200 None:intergenic
TTAGTTGAAGGAGACATTGT+TGG 0.478274 1_3:-72269404 Msa0139060:CDS
GTGTTCATTTGAAGCAAGAA+AGG 0.479787 1_3:-72266574 Msa0139060:CDS
CTCTATTACCTCTTTATGTA+GGG 0.480394 1_3:-72268243 Msa0139060:CDS
CATAAACCCAAAATCGAACC+TGG 0.482521 1_3:-72269719 Msa0139060:CDS
TTATCAAGGTTGCTTTCTGA+AGG 0.485245 1_3:+72266364 None:intergenic
TTCAAGCTGAAGAAGATTTG+AGG 0.489086 1_3:-72269508 Msa0139060:CDS
GATCAACAAGCTTTGTGAAA+GGG 0.494192 1_3:-72266232 Msa0139060:CDS
TCTGACAACATTTGCAAAAG+AGG 0.496897 1_3:-72266769 Msa0139060:CDS
TTCTTTGCAAATGCATATCT+GGG 0.497315 1_3:-72266723 Msa0139060:CDS
CATCATACCTGCACGTCTGA+TGG 0.501556 1_3:+72268119 None:intergenic
TAGTTCCCATCTTCTTTAGG+AGG 0.502708 1_3:+72266699 None:intergenic
AACTATGCGAAAGAGGGAAA+AGG 0.504170 1_3:-72269475 Msa0139060:CDS
GCTCAAGGTGAATCATCATC+TGG 0.509285 1_3:-72269293 Msa0139060:intron
ACAAGCTTTGTGAAAGGGTG+AGG 0.511043 1_3:-72266227 Msa0139060:CDS
GAGTAATTATGAAACATTGT+TGG 0.513700 1_3:-72269447 Msa0139060:CDS
ATGATAGTGACCAGAGGATG+GGG 0.517665 1_3:-72266795 Msa0139060:CDS
TGCACGCTCCCTACATAAAG+AGG 0.520005 1_3:+72268235 None:intergenic
CGGCACGAACTAAAAGAGCT+AGG 0.525867 1_3:-72268295 Msa0139060:CDS
CAATGATAGTGACCAGAGGA+TGG 0.529533 1_3:-72266797 Msa0139060:CDS
GAGAGGAACTATGCGAAAGA+GGG 0.529712 1_3:-72269481 Msa0139060:CDS
ATCAAGGTTGCTTTCTGAAG+GGG 0.531107 1_3:+72266366 None:intergenic
AACTAAAAGAGCTAGGGTTG+GGG 0.531167 1_3:-72268288 Msa0139060:CDS
AGAGAGGAACTATGCGAAAG+AGG 0.532815 1_3:-72269482 Msa0139060:CDS
ATTTGAAGCAAGAAAGGCCA+AGG 0.533782 1_3:-72266568 Msa0139060:CDS
TGAGAAAGTTGAAGCGAAAG+TGG 0.545305 1_3:-72269334 Msa0139060:CDS
GCATGGTTTATGTAGCTTGT+GGG 0.546630 1_3:+72266261 None:intergenic
AATGATAGTGACCAGAGGAT+GGG 0.548642 1_3:-72266796 Msa0139060:CDS
ACTATGCGAAAGAGGGAAAA+GGG 0.558476 1_3:-72269474 Msa0139060:CDS
AGATTCTTAGTACTCTGTGC+AGG 0.562380 1_3:-72266524 Msa0139060:CDS
TGTCCCTCCATCAGACGTGC+AGG 0.562640 1_3:-72268126 Msa0139060:intron
TAATTATGAAACATTGTTGG+AGG 0.563738 1_3:-72269444 Msa0139060:CDS
TGATCAACAAGCTTTGTGAA+AGG 0.564096 1_3:-72266233 Msa0139060:CDS
AACAGTTCGCTGTGGCCCGA+AGG 0.565934 1_3:+72266289 None:intergenic
TATCAAGGTTGCTTTCTGAA+GGG 0.569374 1_3:+72266365 None:intergenic
TAGTACTCTGTGCAGGCCCG+AGG 0.571519 1_3:-72266517 Msa0139060:CDS
TGGCCCGAAGGTCATTTGCT+AGG 0.575481 1_3:+72266301 None:intergenic
TTGAATTGGAGAGACTAATG+AGG 0.577255 1_3:-72269532 Msa0139060:CDS
GATTGGGTTAGGAAGAAAGA+TGG 0.578358 1_3:-72266492 Msa0139060:CDS
TGGGTCCTCCTAAAGAAGAT+GGG 0.581164 1_3:-72266704 Msa0139060:CDS
CACATTTGAACACGGAAGCA+AGG 0.582698 1_3:+72266398 None:intergenic
GACACCCACTGCTAAAGCAT+GGG 0.585381 1_3:-72266439 Msa0139060:CDS
TGACACCCACTGCTAAAGCA+TGG 0.585774 1_3:-72266440 Msa0139060:CDS
CATACCTGCACGTCTGATGG+AGG 0.590917 1_3:+72268122 None:intergenic
CGAACTAAAAGAGCTAGGGT+TGG 0.592003 1_3:-72268290 Msa0139060:CDS
TGGTCATTCGAAGACAACCC+AGG 0.592494 1_3:+72269701 None:intergenic
AAAGTTGAAGCGAAAGTGGT+TGG 0.594562 1_3:-72269330 Msa0139060:CDS
GAAGGTCATTTGCTAGGAGA+CGG 0.595497 1_3:+72266307 None:intergenic
CTACATAAAGAGGTAATAGA+GGG 0.601936 1_3:+72268245 None:intergenic
GGAACTAGATGAGACGTTGG+TGG 0.604691 1_3:+72266944 None:intergenic
AGAAGATTTGAGGAAAAGAG+AGG 0.614227 1_3:-72269498 Msa0139060:CDS
GGCACGAACTAAAAGAGCTA+GGG 0.614763 1_3:-72268294 Msa0139060:CDS
GCTTGTTGATCAATGATGCA+TGG 0.616686 1_3:+72266244 None:intergenic
TGCATGGTTTATGTAGCTTG+TGG 0.616762 1_3:+72266260 None:intergenic
GGTGTACCCTGAAAAGAATG+AGG 0.620543 1_3:-72266205 Msa0139060:CDS
TGACAACGTTCATATCTCAC+AGG 0.621939 1_3:-72268174 Msa0139060:CDS
GTTGCCCATGCTTTAGCAGT+GGG 0.624509 1_3:+72266435 None:intergenic
CAAGCTTTGTGAAAGGGTGA+GGG 0.624867 1_3:-72266226 Msa0139060:CDS
ATACCTGCACGTCTGATGGA+GGG 0.632758 1_3:+72268123 None:intergenic
GATGATAGCAATGCTGCTCA+AGG 0.637953 1_3:-72269308 Msa0139060:CDS
TGTTGCCCATGCTTTAGCAG+TGG 0.654029 1_3:+72266434 None:intergenic
TTTGAAGCAAGAAAGGCCAA+GGG 0.664841 1_3:-72266567 Msa0139060:CDS
AAGGGCGAACCAGTCAATGT+CGG 0.669594 1_3:-72266330 Msa0139060:CDS
ATAAACCCAAAATCGAACCT+GGG 0.669846 1_3:-72269718 Msa0139060:CDS
AAAGGAACTAGATGAGACGT+TGG 0.686332 1_3:+72266941 None:intergenic
TGATAGTGACCAGAGGATGG+GGG 0.689252 1_3:-72266794 Msa0139060:CDS
AAGTCTGACACATTTGAACA+CGG 0.704591 1_3:+72266390 None:intergenic
CAACGTTCATATCTCACAGG+AGG 0.705255 1_3:-72268171 Msa0139060:CDS
CAGGCAATGATAGTGACCAG+AGG 0.712647 1_3:-72266801 Msa0139060:CDS
ATGCACCTATAGTAGATGAG+CGG 0.720441 1_3:-72268205 Msa0139060:CDS
GGGAGAAGAACAGTTCGCTG+TGG 0.729789 1_3:+72266281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATATTTCTTATCA+GGG - chr1_3:72267546-72267565 Msa0139060:intron 10.0%
!!! TAAGTTATGTTTTAAAAAAT+GGG - chr1_3:72268640-72268659 Msa0139060:intron 10.0%
!!! AAATTATGATTTTGAGTAAT+GGG + chr1_3:72266952-72266971 None:intergenic 15.0%
!!! TATCTCTTTTAATATTTTCT+AGG + chr1_3:72267265-72267284 None:intergenic 15.0%
!! TATTCAAAATGTAATTCATT+AGG + chr1_3:72267464-72267483 None:intergenic 15.0%
!!! TAATGAATTACATTTTGAAT+AGG - chr1_3:72267463-72267482 Msa0139060:intron 15.0%
!! CAATTAATATATTTCTTATC+AGG - chr1_3:72267545-72267564 Msa0139060:intron 15.0%
!!! TTTTATTTGAGTTTTTGTTT+TGG - chr1_3:72268183-72268202 Msa0139060:CDS 15.0%
!!! TTTATTTGAGTTTTTGTTTT+GGG - chr1_3:72268184-72268203 Msa0139060:CDS 15.0%
!!! GTAAGTTATGTTTTAAAAAA+TGG - chr1_3:72268639-72268658 Msa0139060:intron 15.0%
!! AAGAAAGAAGAATAATGAAT+TGG - chr1_3:72266490-72266509 Msa0139060:CDS 20.0%
!!! TGCCATGAAAATATAATTTT+TGG - chr1_3:72266723-72266742 Msa0139060:CDS 20.0%
!!! GTCCAAAAATTATATTTTCA+TGG + chr1_3:72266728-72266747 None:intergenic 20.0%
!! CAACTTGATATATAAATTCA+TGG + chr1_3:72266778-72266797 None:intergenic 20.0%
!!! CAAATTATGATTTTGAGTAA+TGG + chr1_3:72266953-72266972 None:intergenic 20.0%
!! ACATAAATTCATTTAGCATT+AGG - chr1_3:72267156-72267175 Msa0139060:intron 20.0%
!!! ATGATTTATGATTTGTAGTT+GGG + chr1_3:72267226-72267245 None:intergenic 20.0%
!! AGATTCAAATCAAATACATA+AGG - chr1_3:72267321-72267340 Msa0139060:intron 20.0%
!!! TAAGGTCAGAAATTTTAAAT+GGG + chr1_3:72267428-72267447 None:intergenic 20.0%
!!! TTAAGGTCAGAAATTTTAAA+TGG + chr1_3:72267429-72267448 None:intergenic 20.0%
!!! TCAATTACATCTAGAATTAT+GGG - chr1_3:72267773-72267792 Msa0139060:intron 20.0%
!! TAAATTTCTTCAATTCACTA+GGG + chr1_3:72267816-72267835 None:intergenic 20.0%
!!! TGAGTTAATTACATTTTACA+GGG + chr1_3:72267849-72267868 None:intergenic 20.0%
!!! ATGAGTTAATTACATTTTAC+AGG + chr1_3:72267850-72267869 None:intergenic 20.0%
!! TAAGTTTATTCCAATTTCTA+TGG - chr1_3:72268413-72268432 Msa0139060:intron 20.0%
!!! TTTATTACCATTTTTCCTAA+TGG - chr1_3:72268437-72268456 Msa0139060:intron 20.0%
!! TTCAAAAAGAATAGTATATG+AGG - chr1_3:72268567-72268586 Msa0139060:intron 20.0%
!! TAAAACATAACTTACTAACT+TGG + chr1_3:72268634-72268653 None:intergenic 20.0%
!!! TTATGTTTTAAAAAATGGGT+AGG - chr1_3:72268644-72268663 Msa0139060:intron 20.0%
!!! TATGTTTTAAAAAATGGGTA+GGG - chr1_3:72268645-72268664 Msa0139060:intron 20.0%
!! TTAATCATTGTTGAATTTGT+TGG - chr1_3:72268685-72268704 Msa0139060:intron 20.0%
!!! TAATCATTGTTGAATTTGTT+GGG - chr1_3:72268686-72268705 Msa0139060:intron 20.0%
!!! TTGTAATTTTATTTGTGACT+AGG - chr1_3:72268766-72268785 Msa0139060:intron 20.0%
!!! TTTTTATCTTTGCTTTGTTT+TGG + chr1_3:72268895-72268914 None:intergenic 20.0%
!! AAACAAAGCAAAGATAAAAA+AGG - chr1_3:72268895-72268914 Msa0139060:intron 20.0%
!!! TTGATAATTTTCTCATGAAA+TGG + chr1_3:72269241-72269260 None:intergenic 20.0%
!! TTTCATGAGAAAATTATCAA+TGG - chr1_3:72269241-72269260 Msa0139060:intron 20.0%
!!! AAAATTATCAATGGATTGTT+TGG - chr1_3:72269250-72269269 Msa0139060:intron 20.0%
!!! AAATTATCAATGGATTGTTT+GGG - chr1_3:72269251-72269270 Msa0139060:intron 20.0%
! GAGTAATTATGAAACATTGT+TGG - chr1_3:72266418-72266437 Msa0139060:CDS 25.0%
! TAATTATGAAACATTGTTGG+AGG - chr1_3:72266421-72266440 Msa0139060:CDS 25.0%
!! AAGAAAACTAGTTTAGTTGA+AGG - chr1_3:72266449-72266468 Msa0139060:CDS 25.0%
! GGAAAAAATGCATAATATAC+AGG + chr1_3:72266629-72266648 None:intergenic 25.0%
! CAATATTTATAAAGCAGCAT+TGG + chr1_3:72266650-72266669 None:intergenic 25.0%
! AATTCAATACAAGTGATGAT+CGG - chr1_3:72266670-72266689 Msa0139060:CDS 25.0%
!!! ATATAATTTTTGGACCAATG+AGG - chr1_3:72266733-72266752 Msa0139060:CDS 25.0%
!!! TATAATTTTTGGACCAATGA+GGG - chr1_3:72266734-72266753 Msa0139060:CDS 25.0%
! ATGAATGTATAATGTGTTGT+TGG - chr1_3:72266804-72266823 Msa0139060:CDS 25.0%
! TAGTTAGTCAATTGTTAGAA+GGG + chr1_3:72267106-72267125 None:intergenic 25.0%
!!! TGTTCTTTGTTTTGTTTGAT+AGG + chr1_3:72267139-72267158 None:intergenic 25.0%
! CATTTAGCATTAGGTTATTA+TGG - chr1_3:72267165-72267184 Msa0139060:intron 25.0%
!! TGATTTATGATTTGTAGTTG+GGG + chr1_3:72267225-72267244 None:intergenic 25.0%
!! GATGATTTATGATTTGTAGT+TGG + chr1_3:72267227-72267246 None:intergenic 25.0%
!! TTGATTTGAATCTCTTCTAT+AGG + chr1_3:72267314-72267333 None:intergenic 25.0%
! AATATATTTCTTATCAGGGA+CGG - chr1_3:72267550-72267569 Msa0139060:intron 25.0%
!! CTCAATTACATCTAGAATTA+TGG - chr1_3:72267772-72267791 Msa0139060:intron 25.0%
! CTAAATTTCTTCAATTCACT+AGG + chr1_3:72267817-72267836 None:intergenic 25.0%
! GAATTGAAGAAATTTAGATG+TGG - chr1_3:72267820-72267839 Msa0139060:intron 25.0%
! TAAAAAAGAGGAAAAGAGAA+TGG + chr1_3:72268376-72268395 None:intergenic 25.0%
! AGAGAAATCTGATAAAAAAG+AGG + chr1_3:72268388-72268407 None:intergenic 25.0%
! GGTAATAAATCCATAGAAAT+TGG + chr1_3:72268426-72268445 None:intergenic 25.0%
! TATGAAGTGAAAAATGTCAA+AGG + chr1_3:72268945-72268964 None:intergenic 25.0%
!! CATTTTTCACTTCATATCAT+TGG - chr1_3:72268949-72268968 Msa0139060:intron 25.0%
!! TTCTAACACAAACTTTTTGT+TGG + chr1_3:72269005-72269024 None:intergenic 25.0%
!!! TCAGAAGAGTTAAGTTTTAT+TGG + chr1_3:72269403-72269422 None:intergenic 25.0%
!!! TGTTTTTTCTATCCATTTCA+CGG + chr1_3:72269713-72269732 None:intergenic 25.0%
TTCGAATGACCATAAAAACT+TGG - chr1_3:72266175-72266194 Msa0139060:CDS 30.0%
! TCATGTCTTCCAAGTTTTTA+TGG + chr1_3:72266187-72266206 None:intergenic 30.0%
ACAGTTTGATGAACTTGAAA+AGG - chr1_3:72266253-72266272 Msa0139060:CDS 30.0%
TCTTCAAGAGAAGTTTGAAT+TGG - chr1_3:72266319-72266338 Msa0139060:CDS 30.0%
GAAGAATAATGAATTGGAGT+TGG - chr1_3:72266496-72266515 Msa0139060:CDS 30.0%
ACAGGTAGAATTTGAAAGAA+AGG + chr1_3:72266838-72266857 None:intergenic 30.0%
! TTGAGTAATGGGACTTAAAT+GGG + chr1_3:72266941-72266960 None:intergenic 30.0%
! TTTGAGTAATGGGACTTAAA+TGG + chr1_3:72266942-72266961 None:intergenic 30.0%
GTAGTTAGTCAATTGTTAGA+AGG + chr1_3:72267107-72267126 None:intergenic 30.0%
GGGGATTTAATTCAGATTAA+AGG + chr1_3:72267206-72267225 None:intergenic 30.0%
TTAGGTAAGAACAAGCATTA+AGG + chr1_3:72267446-72267465 None:intergenic 30.0%
CTACATAAAGAGGTAATAGA+GGG + chr1_3:72267623-72267642 None:intergenic 30.0%
CTCTATTACCTCTTTATGTA+GGG - chr1_3:72267622-72267641 Msa0139060:intron 30.0%
AGAATGAACTTCAAAAACTG+AGG + chr1_3:72268252-72268271 None:intergenic 30.0%
TCTCAAACCATTAGGAAAAA+TGG + chr1_3:72268447-72268466 None:intergenic 30.0%
!! TTTGGATGAGATTTTGATGT+TGG - chr1_3:72268509-72268528 Msa0139060:intron 30.0%
ATAACTTACTAACTTGGTTG+TGG + chr1_3:72268628-72268647 None:intergenic 30.0%
ATAGCATCAAAGTTAGAACA+AGG + chr1_3:72268830-72268849 None:intergenic 30.0%
!!! TTGTTCTTGACTGTTTTTGT+AGG - chr1_3:72268856-72268875 Msa0139060:intron 30.0%
!!! ACTGTTTTTGTAGGAACAAA+TGG - chr1_3:72268865-72268884 Msa0139060:intron 30.0%
GTTAGAAAAAAATCTCCAGT+TGG - chr1_3:72269018-72269037 Msa0139060:intron 30.0%
AAAAAAATCTCCAGTTGGAA+GGG - chr1_3:72269023-72269042 Msa0139060:intron 30.0%
GTACAAATTCTCAGATATTC+AGG - chr1_3:72269045-72269064 Msa0139060:intron 30.0%
TTCTTTGCAAATGCATATCT+GGG - chr1_3:72269142-72269161 Msa0139060:intron 30.0%
TTATAGTTCCCATCTTCTTT+AGG + chr1_3:72269172-72269191 None:intergenic 30.0%
!!! AAATTCACTAGTTTTGTGAG+AGG - chr1_3:72269205-72269224 Msa0139060:intron 30.0%
!!! AATTCACTAGTTTTGTGAGA+GGG - chr1_3:72269206-72269225 Msa0139060:intron 30.0%
! TTGATAACTGCAATCCTTAA+GGG - chr1_3:72269517-72269536 Msa0139060:CDS 30.0%
! CAATTTCCTCATTCTTTTCA+GGG + chr1_3:72269669-72269688 None:intergenic 30.0%
! ACAATTTCCTCATTCTTTTC+AGG + chr1_3:72269670-72269689 None:intergenic 30.0%
ATAAACCCAAAATCGAACCT+GGG - chr1_3:72266147-72266166 Msa0139060:CDS 35.0%
TTGAATTGGAGAGACTAATG+AGG - chr1_3:72266333-72266352 Msa0139060:CDS 35.0%
TTCAAGCTGAAGAAGATTTG+AGG - chr1_3:72266357-72266376 Msa0139060:CDS 35.0%
AGAAGATTTGAGGAAAAGAG+AGG - chr1_3:72266367-72266386 Msa0139060:CDS 35.0%
TTAGTTGAAGGAGACATTGT+TGG - chr1_3:72266461-72266480 Msa0139060:CDS 35.0%
CTAAGAACAAATACCCTCAT+TGG + chr1_3:72266750-72266769 None:intergenic 35.0%
TACACACAAATATTCACACG+CGG + chr1_3:72266871-72266890 None:intergenic 35.0%
TGTGTGTAATTATGTCCCTT+TGG - chr1_3:72266883-72266902 Msa0139060:CDS 35.0%
ACGTTGAAGGAGATTTAAGA+AGG - chr1_3:72267045-72267064 Msa0139060:intron 35.0%
TTGAAGGAGATTTAAGAAGG+AGG - chr1_3:72267048-72267067 Msa0139060:intron 35.0%
GATTAAAGGCTATCTTGTCT+AGG + chr1_3:72267192-72267211 None:intergenic 35.0%
!! TTTTCATGAGTGTTGTGGAT+GGG + chr1_3:72267363-72267382 None:intergenic 35.0%
!! ATTTTCATGAGTGTTGTGGA+TGG + chr1_3:72267364-72267383 None:intergenic 35.0%
!! ATGGATTTTCATGAGTGTTG+TGG + chr1_3:72267368-72267387 None:intergenic 35.0%
CCTACATAAAGAGGTAATAG+AGG + chr1_3:72267624-72267643 None:intergenic 35.0%
CCTCTATTACCTCTTTATGT+AGG - chr1_3:72267621-72267640 Msa0139060:intron 35.0%
AATTGCAAGTCATACTGAAC+TGG - chr1_3:72267986-72268005 Msa0139060:intron 35.0%
ATTGCAAGTCATACTGAACT+GGG - chr1_3:72267987-72268006 Msa0139060:intron 35.0%
CAAAATCTCATCCAAACTGT+GGG + chr1_3:72268505-72268524 None:intergenic 35.0%
TCAAAATCTCATCCAAACTG+TGG + chr1_3:72268506-72268525 None:intergenic 35.0%
! ATGTTGGTTGTCGTGATTAT+GGG - chr1_3:72268525-72268544 Msa0139060:intron 35.0%
GTTATGCATCCAACTATTTC+AGG - chr1_3:72268597-72268616 Msa0139060:intron 35.0%
GAAAAAAATCTCCAGTTGGA+AGG - chr1_3:72269022-72269041 Msa0139060:intron 35.0%
TCTGACAACATTTGCAAAAG+AGG - chr1_3:72269096-72269115 Msa0139060:intron 35.0%
GTTCTTTGCAAATGCATATC+TGG - chr1_3:72269141-72269160 Msa0139060:intron 35.0%
! GTGTTCATTTGAAGCAAGAA+AGG - chr1_3:72269291-72269310 Msa0139060:intron 35.0%
ATGATCAATGTTAGATCCCT+TGG + chr1_3:72269317-72269336 None:intergenic 35.0%
ATCTTTCTTCCTAACCCAAT+CGG + chr1_3:72269374-72269393 None:intergenic 35.0%
AAGTCTGACACATTTGAACA+CGG + chr1_3:72269478-72269497 None:intergenic 35.0%
! TATCAAGGTTGCTTTCTGAA+GGG + chr1_3:72269503-72269522 None:intergenic 35.0%
! TTATCAAGGTTGCTTTCTGA+AGG + chr1_3:72269504-72269523 None:intergenic 35.0%
CTTAAGGATTGCAGTTATCA+AGG + chr1_3:72269518-72269537 None:intergenic 35.0%
! CTTGATAACTGCAATCCTTA+AGG - chr1_3:72269516-72269535 Msa0139060:CDS 35.0%
! TGATCAACAAGCTTTGTGAA+AGG - chr1_3:72269632-72269651 Msa0139060:CDS 35.0%
! GATCAACAAGCTTTGTGAAA+GGG - chr1_3:72269633-72269652 Msa0139060:CDS 35.0%
CATAAACCCAAAATCGAACC+TGG - chr1_3:72266146-72266165 Msa0139060:CDS 40.0%
! GAGCATTCAGGAACTTGTTT+CGG - chr1_3:72266205-72266224 Msa0139060:CDS 40.0%
AACTATGCGAAAGAGGGAAA+AGG - chr1_3:72266390-72266409 Msa0139060:CDS 40.0%
ACTATGCGAAAGAGGGAAAA+GGG - chr1_3:72266391-72266410 Msa0139060:CDS 40.0%
TGAGAAAGTTGAAGCGAAAG+TGG - chr1_3:72266531-72266550 Msa0139060:CDS 40.0%
AAAGTTGAAGCGAAAGTGGT+TGG - chr1_3:72266535-72266554 Msa0139060:CDS 40.0%
! ATCGAACAAGTTGGACCAAA+GGG + chr1_3:72266901-72266920 None:intergenic 40.0%
! AATCGAACAAGTTGGACCAA+AGG + chr1_3:72266902-72266921 None:intergenic 40.0%
! TTTGGTCCAACTTGTTCGAT+TGG - chr1_3:72266901-72266920 Msa0139060:CDS 40.0%
AATGGGACTTAAATGGGAAC+AGG + chr1_3:72266935-72266954 None:intergenic 40.0%
TAGTTTCCGGGAATCAAATC+CGG + chr1_3:72267076-72267095 None:intergenic 40.0%
! AAGGGAGAATGTTAGTTTCC+GGG + chr1_3:72267088-72267107 None:intergenic 40.0%
! GAAGGGAGAATGTTAGTTTC+CGG + chr1_3:72267089-72267108 None:intergenic 40.0%
!! TTCTAGGACTCATCACTCTT+AGG + chr1_3:72267249-72267268 None:intergenic 40.0%
ACTTCTAGACTGCATAAGCA+TGG + chr1_3:72267387-72267406 None:intergenic 40.0%
GAACTAAAAGAGCTAGGGTT+GGG - chr1_3:72267576-72267595 Msa0139060:intron 40.0%
AACTAAAAGAGCTAGGGTTG+GGG - chr1_3:72267577-72267596 Msa0139060:intron 40.0%
ATGCACCTATAGTAGATGAG+CGG - chr1_3:72267660-72267679 Msa0139060:intron 40.0%
TGACAACGTTCATATCTCAC+AGG - chr1_3:72267691-72267710 Msa0139060:intron 40.0%
TTGCAAGTCATACTGAACTG+GGG - chr1_3:72267988-72268007 Msa0139060:intron 40.0%
!! TTACTTGTTCCGTACTGACT+TGG - chr1_3:72268080-72268099 Msa0139060:intron 40.0%
!! TGCAGTATAGTTGGTGATTG+AGG - chr1_3:72268155-72268174 Msa0139060:CDS 40.0%
!! AGTATAGTTGGTGATTGAGG+TGG - chr1_3:72268158-72268177 Msa0139060:CDS 40.0%
!!! TGAGTTTTTGTTTTGGGCGT+TGG - chr1_3:72268190-72268209 Msa0139060:CDS 40.0%
CTTTCAGCTCTCAAACCATT+AGG + chr1_3:72268455-72268474 None:intergenic 40.0%
TTTCTTTCCTTCCCACAGTT+TGG - chr1_3:72268491-72268510 Msa0139060:intron 40.0%
! GATGTTGGTTGTCGTGATTA+TGG - chr1_3:72268524-72268543 Msa0139060:intron 40.0%
GCATCCAACTATTTCAGGAA+AGG - chr1_3:72268602-72268621 Msa0139060:intron 40.0%
GATGCACGAGTATGATGAAA+TGG - chr1_3:72268742-72268761 Msa0139060:intron 40.0%
ACTAGGCATGCTTGTGTTAA+GGG - chr1_3:72268783-72268802 Msa0139060:intron 40.0%
AAAGGAACTAGATGAGACGT+TGG + chr1_3:72268927-72268946 None:intergenic 40.0%
ACTTCGAATAGTGCTCTTGA+TGG + chr1_3:72268976-72268995 None:intergenic 40.0%
! AGAGCACTATTCGAAGTTTC+TGG - chr1_3:72268979-72268998 Msa0139060:intron 40.0%
AGAATTTGTACCCTTCCAAC+TGG + chr1_3:72269036-72269055 None:intergenic 40.0%
! AATGATAGTGACCAGAGGAT+GGG - chr1_3:72269069-72269088 Msa0139060:intron 40.0%
TAGTTCCCATCTTCTTTAGG+AGG + chr1_3:72269169-72269188 None:intergenic 40.0%
!!! TAGTTTTGTGAGAGGGAAGA+AGG - chr1_3:72269213-72269232 Msa0139060:intron 40.0%
! ATTTGAAGCAAGAAAGGCCA+AGG - chr1_3:72269297-72269316 Msa0139060:CDS 40.0%
! TTTGAAGCAAGAAAGGCCAA+GGG - chr1_3:72269298-72269317 Msa0139060:CDS 40.0%
GGGATCTAACATTGATCATC+AGG - chr1_3:72269318-72269337 Msa0139060:CDS 40.0%
AGATTCTTAGTACTCTGTGC+AGG - chr1_3:72269341-72269360 Msa0139060:CDS 40.0%
! GATTGGGTTAGGAAGAAAGA+TGG - chr1_3:72269373-72269392 Msa0139060:CDS 40.0%
! ATCAAGGTTGCTTTCTGAAG+GGG + chr1_3:72269502-72269521 None:intergenic 40.0%
! GCATGGTTTATGTAGCTTGT+GGG + chr1_3:72269607-72269626 None:intergenic 40.0%
TGCATGGTTTATGTAGCTTG+TGG + chr1_3:72269608-72269627 None:intergenic 40.0%
! GCTTGTTGATCAATGATGCA+TGG + chr1_3:72269624-72269643 None:intergenic 40.0%
! GACAACCCAGGTTCGATTTT+GGG + chr1_3:72266155-72266174 None:intergenic 45.0%
! AGACAACCCAGGTTCGATTT+TGG + chr1_3:72266156-72266175 None:intergenic 45.0%
CTTGGAAGACATGAGCATTC+AGG - chr1_3:72266193-72266212 Msa0139060:CDS 45.0%
AGAGAGGAACTATGCGAAAG+AGG - chr1_3:72266383-72266402 Msa0139060:CDS 45.0%
GAGAGGAACTATGCGAAAGA+GGG - chr1_3:72266384-72266403 Msa0139060:CDS 45.0%
GATGATAGCAATGCTGCTCA+AGG - chr1_3:72266557-72266576 Msa0139060:CDS 45.0%
GCTCAAGGTGAATCATCATC+TGG - chr1_3:72266572-72266591 Msa0139060:CDS 45.0%
CAATCGCCAATCGAACAAGT+TGG + chr1_3:72266910-72266929 None:intergenic 45.0%
! CAACTTGTTCGATTGGCGAT+TGG - chr1_3:72266908-72266927 Msa0139060:CDS 45.0%
AGATAAACACTTCCCCGCAT+AGG - chr1_3:72266999-72267018 Msa0139060:intron 45.0%
TAGCTCGGTTGTTGAGCTAA+AGG - chr1_3:72267022-72267041 Msa0139060:intron 45.0%
GTTGAGCTAAAGGACGTTGA+AGG - chr1_3:72267032-72267051 Msa0139060:intron 45.0%
GAGATTTAAGAAGGAGGTCC+CGG - chr1_3:72267054-72267073 Msa0139060:intron 45.0%
AGTTTCCGGGAATCAAATCC+GGG + chr1_3:72267075-72267094 None:intergenic 45.0%
GGCACGAACTAAAAGAGCTA+GGG - chr1_3:72267571-72267590 Msa0139060:intron 45.0%
CGAACTAAAAGAGCTAGGGT+TGG - chr1_3:72267575-72267594 Msa0139060:intron 45.0%
AGAGGGTTCACGTCCAAAAT+GGG + chr1_3:72267606-72267625 None:intergenic 45.0%
TAGAGGGTTCACGTCCAAAA+TGG + chr1_3:72267607-72267626 None:intergenic 45.0%
TCTTGCCGCTCATCTACTAT+AGG + chr1_3:72267668-72267687 None:intergenic 45.0%
CAACGTTCATATCTCACAGG+AGG - chr1_3:72267694-72267713 Msa0139060:intron 45.0%
!! AGAATGAGGCCAAAAGCGTT+TGG + chr1_3:72268041-72268060 None:intergenic 45.0%
! AAACGCTTTTGGCCTCATTC+TGG - chr1_3:72268040-72268059 Msa0139060:intron 45.0%
CAGTTAAGCACTCCAGAATG+AGG + chr1_3:72268055-72268074 None:intergenic 45.0%
AGGCTTTGCATAAGAGAGGT+AGG + chr1_3:72268297-72268316 None:intergenic 45.0%
GAGAAGGCTTTGCATAAGAG+AGG + chr1_3:72268301-72268320 None:intergenic 45.0%
GAGAATGGTTGTGCGACATT+GGG + chr1_3:72268361-72268380 None:intergenic 45.0%
AGAGAATGGTTGTGCGACAT+TGG + chr1_3:72268362-72268381 None:intergenic 45.0%
ATCTCATCCAAACTGTGGGA+AGG + chr1_3:72268501-72268520 None:intergenic 45.0%
GTTGTCGTGATTATGGGTAC+TGG - chr1_3:72268531-72268550 Msa0139060:intron 45.0%
GTGGCCTTTCCTGAAATAGT+TGG + chr1_3:72268609-72268628 None:intergenic 45.0%
GACTAGGCATGCTTGTGTTA+AGG - chr1_3:72268782-72268801 Msa0139060:intron 45.0%
CTAGGCATGCTTGTGTTAAG+GGG - chr1_3:72268784-72268803 Msa0139060:intron 45.0%
GGGGATGGTTACTTGTTCAT+AGG - chr1_3:72268803-72268822 Msa0139060:intron 45.0%
! CAATGATAGTGACCAGAGGA+TGG - chr1_3:72269068-72269087 Msa0139060:intron 45.0%
! ATGATAGTGACCAGAGGATG+GGG - chr1_3:72269070-72269089 Msa0139060:intron 45.0%
TGGGTCCTCCTAAAGAAGAT+GGG - chr1_3:72269161-72269180 Msa0139060:intron 45.0%
CACATTTGAACACGGAAGCA+AGG + chr1_3:72269470-72269489 None:intergenic 45.0%
! GAAGGTCATTTGCTAGGAGA+CGG + chr1_3:72269561-72269580 None:intergenic 45.0%
GTCTCCTAGCAAATGACCTT+CGG - chr1_3:72269560-72269579 Msa0139060:CDS 45.0%
TCTCCTAGCAAATGACCTTC+GGG - chr1_3:72269561-72269580 Msa0139060:CDS 45.0%
! ACAAGCTTTGTGAAAGGGTG+AGG - chr1_3:72269638-72269657 Msa0139060:CDS 45.0%
! CAAGCTTTGTGAAAGGGTGA+GGG - chr1_3:72269639-72269658 Msa0139060:CDS 45.0%
GGTGTACCCTGAAAAGAATG+AGG - chr1_3:72269660-72269679 Msa0139060:CDS 45.0%
TCTATCCATTTCACGGTGAC+TGG + chr1_3:72269706-72269725 None:intergenic 45.0%
TGGTCATTCGAAGACAACCC+AGG + chr1_3:72266167-72266186 None:intergenic 50.0%
ACACGCGGTATACACACTAC+AGG + chr1_3:72266856-72266875 None:intergenic 50.0%
AACAACCGAGCTACCTATGC+GGG + chr1_3:72267015-72267034 None:intergenic 50.0%
CAACAACCGAGCTACCTATG+CGG + chr1_3:72267016-72267035 None:intergenic 50.0%
CGGCACGAACTAAAAGAGCT+AGG - chr1_3:72267570-72267589 Msa0139060:intron 50.0%
TGCACGCTCCCTACATAAAG+AGG + chr1_3:72267633-72267652 None:intergenic 50.0%
ATACCTGCACGTCTGATGGA+GGG + chr1_3:72267745-72267764 None:intergenic 50.0%
CATCATACCTGCACGTCTGA+TGG + chr1_3:72267749-72267768 None:intergenic 50.0%
!! TGCAAAGAGGCACTCCAATG+CGG + chr1_3:72268106-72268125 None:intergenic 50.0%
TGTGCGCTAAGCATGCAAAG+AGG + chr1_3:72268119-72268138 None:intergenic 50.0%
! ATCTTTGCCTGGGTTGAGGA+GGG + chr1_3:72268323-72268342 None:intergenic 50.0%
! AATCTTTGCCTGGGTTGAGG+AGG + chr1_3:72268324-72268343 None:intergenic 50.0%
CAGAATCTTTGCCTGGGTTG+AGG + chr1_3:72268327-72268346 None:intergenic 50.0%
GGTGGTCAGAATCTTTGCCT+GGG + chr1_3:72268333-72268352 None:intergenic 50.0%
AGGTGGTCAGAATCTTTGCC+TGG + chr1_3:72268334-72268353 None:intergenic 50.0%
GCATGCTTGTGTTAAGGGGA+TGG - chr1_3:72268788-72268807 Msa0139060:intron 50.0%
GGAACTAGATGAGACGTTGG+TGG + chr1_3:72268924-72268943 None:intergenic 50.0%
! CAGGCAATGATAGTGACCAG+AGG - chr1_3:72269064-72269083 Msa0139060:intron 50.0%
! TGATAGTGACCAGAGGATGG+GGG - chr1_3:72269071-72269090 Msa0139060:intron 50.0%
CTGGGTCCTCCTAAAGAAGA+TGG - chr1_3:72269160-72269179 Msa0139060:intron 50.0%
ATGCTTTAGCAGTGGGTGTC+AGG + chr1_3:72269426-72269445 None:intergenic 50.0%
TGACACCCACTGCTAAAGCA+TGG - chr1_3:72269425-72269444 Msa0139060:CDS 50.0%
GACACCCACTGCTAAAGCAT+GGG - chr1_3:72269426-72269445 Msa0139060:CDS 50.0%
GTTGCCCATGCTTTAGCAGT+GGG + chr1_3:72269433-72269452 None:intergenic 50.0%
TGTTGCCCATGCTTTAGCAG+TGG + chr1_3:72269434-72269453 None:intergenic 50.0%
!! CATTGACTGGTTCGCCCTTA+AGG + chr1_3:72269534-72269553 None:intergenic 50.0%
AAGGGCGAACCAGTCAATGT+CGG - chr1_3:72269535-72269554 Msa0139060:CDS 50.0%
!! TTCACGGTGACTGGTCTAGA+TGG + chr1_3:72269697-72269716 None:intergenic 50.0%
CTAGACCAGTCACCGTGAAA+TGG - chr1_3:72269698-72269717 Msa0139060:CDS 50.0%
ACTTCCCCGCATAGGTAGCT+CGG - chr1_3:72267007-72267026 Msa0139060:intron 55.0%
ACAACCGAGCTACCTATGCG+GGG + chr1_3:72267014-72267033 None:intergenic 55.0%
GAGGTCCCGGATTTGATTCC+CGG - chr1_3:72267067-72267086 Msa0139060:intron 55.0%
! AGGGTTGGGGTTGCCCATTT+TGG - chr1_3:72267590-72267609 Msa0139060:intron 55.0%
CATACCTGCACGTCTGATGG+AGG + chr1_3:72267746-72267765 None:intergenic 55.0%
! GGGCACGTTCCAAACGCTTT+TGG - chr1_3:72268029-72268048 Msa0139060:intron 55.0%
CCAATGCGGCCAAGTCAGTA+CGG + chr1_3:72268092-72268111 None:intergenic 55.0%
TGCATGCTTAGCGCACATGC+TGG - chr1_3:72268122-72268141 Msa0139060:intron 55.0%
CGCGCTGAGTGCAGTATAGT+TGG - chr1_3:72268146-72268165 Msa0139060:CDS 55.0%
GTTGTGCGACATTGGGCATG+AGG + chr1_3:72268354-72268373 None:intergenic 55.0%
TTCCTAACCCAATCGGCCTC+GGG + chr1_3:72269367-72269386 None:intergenic 55.0%
CTTCCTAACCCAATCGGCCT+CGG + chr1_3:72269368-72269387 None:intergenic 55.0%
TGGCCCGAAGGTCATTTGCT+AGG + chr1_3:72269567-72269586 None:intergenic 55.0%
GGGAGAAGAACAGTTCGCTG+TGG + chr1_3:72269587-72269606 None:intergenic 55.0%
!! CGGTGTCGCGTACAGCGTTT+CGG - chr1_3:72266225-72266244 Msa0139060:CDS 60.0%
TGTCCCTCCATCAGACGTGC+AGG - chr1_3:72267739-72267758 Msa0139060:intron 60.0%
GGCTTCCACCTGTGCGCTTA+GGG - chr1_3:72268009-72268028 Msa0139060:intron 60.0%
!! CCGTACTGACTTGGCCGCAT+TGG - chr1_3:72268089-72268108 Msa0139060:intron 60.0%
!!! TGTTTTGGGCGTTGGAGCGC+AGG - chr1_3:72268198-72268217 Msa0139060:CDS 60.0%
GTGCGACATTGGGCATGAGG+TGG + chr1_3:72268351-72268370 None:intergenic 60.0%
TGTCAGATGCCCCCATCCTC+TGG + chr1_3:72269083-72269102 None:intergenic 60.0%
TAGTACTCTGTGCAGGCCCG+AGG - chr1_3:72269348-72269367 Msa0139060:CDS 60.0%
AGGAGACGGCCGACATTGAC+TGG + chr1_3:72269547-72269566 None:intergenic 60.0%
AACAGTTCGCTGTGGCCCGA+AGG + chr1_3:72269579-72269598 None:intergenic 60.0%
GGGCTTCCACCTGTGCGCTT+AGG - chr1_3:72268008-72268027 Msa0139060:intron 65.0%
ACGTGCCCTAAGCGCACAGG+TGG + chr1_3:72268017-72268036 None:intergenic 65.0%
GGAACGTGCCCTAAGCGCAC+AGG + chr1_3:72268020-72268039 None:intergenic 65.0%
!! TTTGGGCGTTGGAGCGCAGG+AGG - chr1_3:72268201-72268220 Msa0139060:CDS 65.0%
!! TTGGGCGTTGGAGCGCAGGA+GGG - chr1_3:72268202-72268221 Msa0139060:CDS 65.0%
GCCTTCTCCCTCCTCAACCC+AGG - chr1_3:72268313-72268332 Msa0139060:intron 65.0%
! GCCTGGGTTGAGGAGGGAGA+AGG + chr1_3:72268317-72268336 None:intergenic 65.0%
CGCGCTGGGGTTCTGCTGCA+TGG - chr1_3:72268226-72268245 Msa0139060:CDS 70.0%
TGTGCAGGCCCGAGGCCGAT+TGG - chr1_3:72269356-72269375 Msa0139060:CDS 70.0%
GTGCAGGCCCGAGGCCGATT+GGG - chr1_3:72269357-72269376 Msa0139060:CDS 70.0%
GGCCCGAGGCCGATTGGGTT+AGG - chr1_3:72269362-72269381 Msa0139060:CDS 70.0%
GAGCGCAGGAGGGACGCGCT+GGG - chr1_3:72268212-72268231 Msa0139060:CDS 75.0%
AGCGCAGGAGGGACGCGCTG+GGG - chr1_3:72268213-72268232 Msa0139060:CDS 75.0%
! GGAGCGCAGGAGGGACGCGC+TGG - chr1_3:72268211-72268230 Msa0139060:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72266140 72269747 72266140 ID=Msa0139060;Name=Msa0139060
chr1_3 mRNA 72266140 72269747 72266140 ID=Msa0139060-mRNA-1;Parent=Msa0139060;Name=Msa0139060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|505
chr1_3 exon 72269294 72269747 72269294 ID=Msa0139060-mRNA-1:exon:25242;Parent=Msa0139060-mRNA-1
chr1_3 exon 72268127 72268320 72268127 ID=Msa0139060-mRNA-1:exon:25241;Parent=Msa0139060-mRNA-1
chr1_3 exon 72266140 72267009 72266140 ID=Msa0139060-mRNA-1:exon:25240;Parent=Msa0139060-mRNA-1
chr1_3 CDS 72269294 72269747 72269294 ID=Msa0139060-mRNA-1:cds;Parent=Msa0139060-mRNA-1
chr1_3 CDS 72268127 72268320 72268127 ID=Msa0139060-mRNA-1:cds;Parent=Msa0139060-mRNA-1
chr1_3 CDS 72266140 72267009 72266140 ID=Msa0139060-mRNA-1:cds;Parent=Msa0139060-mRNA-1
Gene Sequence

>Msa0139060

ATGGAACATAAACCCAAAATCGAACCTGGGTTGTCTTCGAATGACCATAAAAACTTGGAAGACATGAGCATTCAGGAACTTGTTTCGGTGTCGCGTACAGCGTTTCGGACAGAACAGTTTGATGAACTTGAAAAGGTTTTAGTGAGTAGATATGAGAGACTACAGACACAGATTCTACATCTTCAAGAGAAGTTTGAATTGGAGAGACTAATGAGGTTTCAAGCTGAAGAAGATTTGAGGAAAAGAGAGGAACTATGCGAAAGAGGGAAAAGGGCAGAGAGTAATTATGAAACATTGTTGGAGGAAGTCAAGAAAACTAGTTTAGTTGAAGGAGACATTGTTGGTGAGCTAAGAAAGAAGAATAATGAATTGGAGTTGGAAGTTTGTGAGCTGAGAAAGTTGAAGCGAAAGTGGTTGGATGATAGCAATGCTGCTCAAGGTGAATCATCATCTGGGACGGCACGAACTAAAAGAGCTAGGGTTGGGGTTGCCCATTTTGGACGTGAACCCTCTATTACCTCTTTATGTAGGGAGCGTGCAGCTAGACATGCACCTATAGTAGATGAGCGGCAAGAGAATGACAACGTTCATATCTCACAGGAGGTCATTATGACAGACAATGTTGTTGTCCCTCCATCAGACGTGCAGGAACAAATGGCAAGCCAAAACAAAGCAAAGATAAAAAAGGTTGCCACCAACGTCTCATCTAGTTCCTTTGACATTTTTCACTTCATATCATTGGTCCATCAAGAGCACTATTCGAAGTTTCTGGCCAACAAAAAGTTTGTGTTAGAAAAAAATCTCCAGTTGGAAGGGTACAAATTCTCAGATATTCAGGCAATGATAGTGACCAGAGGATGGGGGCATCTGACAACATTTGCAAAAGAGGCTAGTGCGACATTAGCTAAAGAGTTCTTTGCAAATGCATATCTGGGTCCTCCTAAAGAAGATGGGAACTATAAGAACGATTTGATGAAATTCACTAGTTTTGTGAGAGGGAAGAAGGTGCCATTTCATGAGAAAATTATCAATGGATTGTTTGGGCTAGAGAACTATGAGCAGTGTTCATTTGAAGCAAGAAAGGCCAAGGGATCTAACATTGATCATCAGGAGATTCTTAGTACTCTGTGCAGGCCCGAGGCCGATTGGGTTAGGAAGAAAGATGGAACACCAATAAAACTTAACTCTTCTGACCTGACACCCACTGCTAAAGCATGGGCAACATTTATTTTGCATACCTTGCTTCCGTGTTCAAATGTGTCAGACTTGCCCCTTCAGAAAGCAACCTTGATAACTGCAATCCTTAAGGGCGAACCAGTCAATGTCGGCCGTCTCCTAGCAAATGACCTTCGGGCCACAGCGAACTGTTCTTCTCCCACAAGCTACATAAACCATGCATCATTGATCAACAAGCTTTGTGAAAGGGTGAGGGTGTACCCTGAAAAGAATGAGGAAATTGTGAAGCCATCTAGACCAGTCACCGTGAAATGGATAGAAAAAACATCCATTATAACTTAA

Protein sequence

>Msa0139060

MEHKPKIEPGLSSNDHKNLEDMSIQELVSVSRTAFRTEQFDELEKVLVSRYERLQTQILHLQEKFELERLMRFQAEEDLRKREELCERGKRAESNYETLLEEVKKTSLVEGDIVGELRKKNNELELEVCELRKLKRKWLDDSNAAQGESSSGTARTKRARVGVAHFGREPSITSLCRERAARHAPIVDERQENDNVHISQEVIMTDNVVVPPSDVQEQMASQNKAKIKKVATNVSSSSFDIFHFISLVHQEHYSKFLANKKFVLEKNLQLEGYKFSDIQAMIVTRGWGHLTTFAKEASATLAKEFFANAYLGPPKEDGNYKNDLMKFTSFVRGKKVPFHEKIINGLFGLENYEQCSFEARKAKGSNIDHQEILSTLCRPEADWVRKKDGTPIKLNSSDLTPTAKAWATFILHTLLPCSNVSDLPLQKATLITAILKGEPVNVGRLLANDLRATANCSSPTSYINHASLINKLCERVRVYPEKNEEIVKPSRPVTVKWIEKTSIIT*