AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824310 MtrunA17_Chr5g0445101 90.500 1179 91 5 1 1168 1 1169 0.0 2127
Msa0824310 MtrunA17_Chr3g0100331 52.305 499 187 10 15 480 7 487 4.14e-159 506
Msa0824310 MtrunA17_Chr3g0100331 38.365 159 77 7 867 1006 492 648 2.41e-12 71.6
Msa0824310 MtrunA17_Chr8g0336661 46.718 259 111 4 213 445 306 563 4.91e-72 261
Msa0824310 MtrunA17_Chr8g0336661 38.272 162 94 2 61 216 49 210 1.38e-26 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824310 AT5G55390.3 50.469 426 181 10 23 426 18 435 1.50e-129 428
Msa0824310 AT5G55390.2 50.469 426 181 10 23 426 18 435 1.50e-129 428
Msa0824310 AT5G55390.1 50.469 426 181 10 23 426 18 435 1.50e-129 428
Msa0824310 AT5G48090.1 33.762 311 134 11 168 426 3 293 5.54e-41 162
Msa0824310 AT5G48090.3 36.214 243 103 8 217 426 29 252 1.65e-39 157
Msa0824310 AT5G48090.2 36.214 243 103 8 217 426 29 252 1.65e-39 157

Find 215 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATGTACATTTAGATTT+TGG 0.149061 5_3:-63452601 Msa0824310:three_prime_UTR
TCAGATCTTTCATTTGATTT+TGG 0.177111 5_3:+63453691 None:intergenic
GCCTTCACAGAAGGATTTAT+TGG 0.186595 5_3:-63458850 Msa0824310:CDS
GTAGGCTTCATCTTCTTATT+AGG 0.208478 5_3:+63455020 None:intergenic
AATATTATGGATGGTGATTC+TGG 0.211883 5_3:-63452990 Msa0824310:CDS
AATGCTGTTTGTAGCTCTTA+TGG 0.220957 5_3:-63458879 Msa0824310:intron
GCAAGATATCTGACTAATTT+AGG 0.224313 5_3:+63452567 None:intergenic
CCTGATTGTCGTGCTTTATT+TGG 0.234766 5_3:+63453572 None:intergenic
TTGTCTGGGAAAGTGATTTC+TGG 0.236951 5_3:-63453733 Msa0824310:CDS
GCTACTCGTAAATCAAAATT+TGG 0.248096 5_3:-63452720 Msa0824310:CDS
AACTTATTTGATTTGATTCC+GGG 0.250788 5_3:+63453788 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_3:+63454087 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_3:+63454324 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_3:+63454561 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_3:+63454798 None:intergenic
AAAGGAAATCCACGACATTA+AGG 0.268743 5_3:-63459756 Msa0824310:CDS
ACATACATCAACTTCCTTCT+TGG 0.270303 5_3:+63456805 None:intergenic
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_3:-63454198 Msa0824310:CDS
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_3:-63454672 Msa0824310:CDS
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_3:-63454909 Msa0824310:CDS
ATGCTGTTTGTAGCTCTTAT+GGG 0.294420 5_3:-63458878 Msa0824310:intron
TTGTGTGCTTCTATGAATAA+AGG 0.301317 5_3:-63453601 Msa0824310:CDS
GTTTAAATGGAGCGCTTCTA+AGG 0.301906 5_3:-63459635 Msa0824310:CDS
AAACTGCCTTCTAGCAAAAT+TGG 0.302139 5_3:-63454435 Msa0824310:CDS
TATTGGCTTAGCTAATTCTA+AGG 0.304463 5_3:-63458790 Msa0824310:intron
CTTGACATTTCCTTTGATTC+CGG 0.305090 5_3:+63453889 None:intergenic
TTGCATGGATCTGCTGATAA+TGG 0.306430 5_3:-63459571 Msa0824310:CDS
AAATTTGCACCCATCCATTC+AGG 0.309814 5_3:-63452681 Msa0824310:CDS
CGGAAACATGCTTAACTAAT+GGG 0.315501 5_3:+63455554 None:intergenic
GTTGGCTGCTGAAAATATTA+TGG 0.320999 5_3:-63453003 Msa0824310:CDS
GTTGGCTTTGTTAAATCATC+TGG 0.325538 5_3:-63454018 Msa0824310:CDS
GCATGGAAGTTTGATCTAAC+TGG 0.326461 5_3:-63459520 Msa0824310:CDS
TCGGAAACATGCTTAACTAA+TGG 0.342529 5_3:+63455553 None:intergenic
ATGATATTGCAACAAGGGCT+TGG 0.360196 5_3:-63455260 Msa0824310:CDS
AAACTTATTTGATTTGATTC+CGG 0.367262 5_3:+63453787 None:intergenic
CGTTGTTGTCGAAAGATAAA+AGG 0.370169 5_3:-63459480 Msa0824310:CDS
AAGTCAAATTCAAATTTGTC+TGG 0.370296 5_3:-63453748 Msa0824310:CDS
CACCCATCCATTCAGGTGGT+TGG 0.371904 5_3:-63452674 Msa0824310:CDS
CGTACATGTGACCATGCTCC+TGG 0.380370 5_3:+63453033 None:intergenic
CCTGTTTGTCTTGAGTCTCC+TGG 0.383586 5_3:+63452871 None:intergenic
ACACTTACAAGCAATATATA+AGG 0.388898 5_3:+63455211 None:intergenic
TATATAAGGATACGATTGTT+TGG 0.390253 5_3:+63455225 None:intergenic
GGAAAACTGCCTTCTAAAAC+TGG 0.394213 5_3:-63453964 Msa0824310:CDS
TCAACTCTCTCTGTAGTTGT+AGG 0.394419 5_3:+63454291 None:intergenic
GTTGGCTCTGTTAAATCATC+TGG 0.398623 5_3:-63454255 Msa0824310:CDS
GTTGGCTCTGTTAAATCATC+TGG 0.398623 5_3:-63454729 Msa0824310:CDS
TGCATGGATCTGCTGATAAT+GGG 0.399149 5_3:-63459570 Msa0824310:CDS
TCAACGCTCTCTGTAGTTGT+AGG 0.402831 5_3:+63454528 None:intergenic
TTTCTTGTTCAGATATTTCA+AGG 0.404687 5_3:-63453813 Msa0824310:CDS
GAAGCTACTACAAGAGATAT+TGG 0.409358 5_3:-63458807 Msa0824310:CDS
TTCTAACAGGCATGATCGAC+AGG 0.411514 5_3:+63453527 None:intergenic
GGAACAGTGGCTCTAGTGTC+GGG 0.412789 5_3:+63454345 None:intergenic
GGAACAGTGGCTCTAGTGTC+GGG 0.412789 5_3:+63454819 None:intergenic
AAAGTTGATGATAGCGAAAA+GGG 0.419421 5_3:-63459607 Msa0824310:CDS
TCTACTGAAAAGATCGAATC+TGG 0.422460 5_3:-63453931 Msa0824310:CDS
GAATCTTTATGTGATTCTCT+TGG 0.422617 5_3:-63456833 Msa0824310:CDS
CATTTGCGATGATATGACTT+TGG 0.424216 5_3:+63455406 None:intergenic
GGAACAGTAGCTCTAGTGTT+GGG 0.424954 5_3:+63454108 None:intergenic
TTTACCTCACACTTGGCCAT+TGG 0.425784 5_3:+63453646 None:intergenic
TGCTTTGCATGTGGCGAGCT+GGG 0.428860 5_3:-63456642 Msa0824310:CDS
GTTGGCTCTGTTAAATCATC+TGG 0.429177 5_3:-63454492 Msa0824310:CDS
ATGCTTTGCATGTGGCGAGC+TGG 0.434494 5_3:-63456643 Msa0824310:CDS
TGATATTGCAACAAGGGCTT+GGG 0.436796 5_3:-63455259 Msa0824310:CDS
AACGCTTTATTGAGATGAAA+AGG 0.436927 5_3:-63459774 None:intergenic
CAAAGTTGATGATAGCGAAA+AGG 0.440091 5_3:-63459608 Msa0824310:CDS
AAGGAAATCCACGACATTAA+GGG 0.440617 5_3:-63459755 Msa0824310:CDS
TGCTAGATCCTCAATATTGT+TGG 0.443141 5_3:-63453267 Msa0824310:CDS
GGAGGCAATACACTTCTAAC+AGG 0.443800 5_3:+63453514 None:intergenic
TTAGAAGCGCTCCATTTAAA+CGG 0.444864 5_3:+63459637 None:intergenic
GTTGGGAGATGTTGAGGATA+AGG 0.445980 5_3:-63453222 Msa0824310:CDS
ACAACGCTCTCTGTAGTTGT+AGG 0.446925 5_3:+63454765 None:intergenic
CGACACTAGAGCCACTGTTC+CGG 0.451598 5_3:-63454343 Msa0824310:CDS
CGACACTAGAGCCACTGTTC+CGG 0.451598 5_3:-63454817 Msa0824310:CDS
CTCAAAGAATTCGTCTGAAA+AGG 0.454422 5_3:-63453839 Msa0824310:CDS
CTGGATGCTGATTCAGAGAA+AGG 0.455585 5_3:-63453490 Msa0824310:CDS
CCAAATAAAGCACGACAATC+AGG 0.457304 5_3:-63453572 Msa0824310:CDS
AATCTGGTTCAGATATTTCA+AGG 0.457360 5_3:-63453915 Msa0824310:CDS
TTGGATCATATGTCTCTGAT+TGG 0.460855 5_3:-63458831 Msa0824310:CDS
TGCTACTAAGGCGGATGGTA+GGG 0.466724 5_3:-63456855 Msa0824310:CDS
CAAATTTCTTGCAGGTGTGA+TGG 0.470181 5_3:-63456899 Msa0824310:intron
CCGACACTAGATATAGTGTT+CGG 0.474683 5_3:-63455055 Msa0824310:CDS
TTTAATATATTAACGTAAGA+GGG 0.476473 5_3:-63452627 Msa0824310:three_prime_UTR
GGAACAGTGTCTCTAGTGTC+GGG 0.479680 5_3:+63454582 None:intergenic
AAATATTACGGAGAGTAAGC+TGG 0.480063 5_3:-63453096 Msa0824310:CDS
AAATCAATACTTCTAATAAG+AGG 0.480522 5_3:-63454320 Msa0824310:CDS
AAATCAATACTTCTAATAAG+AGG 0.480522 5_3:-63454557 Msa0824310:CDS
AAATCAATACTTCTAATAAG+AGG 0.480522 5_3:-63454794 Msa0824310:CDS
CGGAACAGTGTCTCTAGTGT+CGG 0.481130 5_3:+63454581 None:intergenic
CGACACTAGATATAGTGTTC+GGG 0.482018 5_3:-63455054 Msa0824310:CDS
AAAACGAGCTGGATGCTTGT+TGG 0.482114 5_3:+63452746 None:intergenic
CAACACTAGAGCTACTGTTC+CGG 0.482229 5_3:-63454106 Msa0824310:CDS
TTGCTGTGTCTGTGAAGGCT+TGG 0.483076 5_3:-63455476 Msa0824310:CDS
GACTTTAAGAGATCATGATT+CGG 0.484219 5_3:+63452954 None:intergenic
AGGTCGACGATGCAGATAAT+CGG 0.485330 5_3:-63453552 Msa0824310:CDS
CCAGGAGACTCAAGACAAAC+AGG 0.485498 5_3:-63452871 Msa0824310:CDS
CGAACACTATATCTAGTGTC+GGG 0.489317 5_3:+63455056 None:intergenic
ATATTATGGATGGTGATTCT+GGG 0.490562 5_3:-63452989 Msa0824310:CDS
ATGCTACTAAGGCGGATGGT+AGG 0.492844 5_3:-63456856 Msa0824310:CDS
GGCCATTACAATGAGGAAGC+TGG 0.493545 5_3:-63453201 Msa0824310:CDS
ATCAAATGAAAGATCTGAAA+CGG 0.494136 5_3:-63453686 Msa0824310:CDS
GTTGAATTGAAGAACAATGT+TGG 0.496363 5_3:-63454036 Msa0824310:CDS
GAGCCAACCACCTGAATGGA+TGG 0.496619 5_3:+63452671 None:intergenic
ATGAGATCAGTGATGAGCTT+GGG 0.498461 5_3:-63455106 Msa0824310:CDS
CGGAACAGTGGCTCTAGTGT+CGG 0.498689 5_3:+63454344 None:intergenic
CGGAACAGTGGCTCTAGTGT+CGG 0.498689 5_3:+63454818 None:intergenic
CGAGTAGCTGCAAAACGAGC+TGG 0.499101 5_3:+63452735 None:intergenic
CTTCGAGCCAACCACCTGAA+TGG 0.501610 5_3:+63452667 None:intergenic
CAAACTGCAAATTGCAACTC+AGG 0.505005 5_3:+63455439 None:intergenic
CGACACTAGAGACACTGTTC+CGG 0.505654 5_3:-63454580 Msa0824310:CDS
ATCCAGCTTCCTCATTGTAA+TGG 0.510430 5_3:+63453199 None:intergenic
ATACTTCTAATAAGAGGAAG+AGG 0.512282 5_3:-63454551 Msa0824310:CDS
TTCAAGGACACCGGAATCAA+AGG 0.514134 5_3:-63453899 Msa0824310:CDS
CAATACTTCTAATAAGAGGA+TGG 0.514603 5_3:-63454790 Msa0824310:CDS
GAGGTCATTTCATGCTACTA+AGG 0.515381 5_3:-63456867 Msa0824310:CDS
AGTTTCATCCCTTAATGTCG+TGG 0.516017 5_3:+63459747 None:intergenic
TGAAGGCTTGGAAAATAAGA+TGG 0.518997 5_3:-63455464 Msa0824310:CDS
TCAACTCTCTCTGTAGATGT+AGG 0.522483 5_3:+63454054 None:intergenic
AGTCAAATTCAAATTTGTCT+GGG 0.523249 5_3:-63453747 Msa0824310:CDS
GTTGAATTGAAGAACAATGT+TGG 0.525380 5_3:-63454273 Msa0824310:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.527295 5_3:-63454459 Msa0824310:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.527295 5_3:-63454696 Msa0824310:CDS
GCACACAATTTCTGACCAGT+TGG 0.529045 5_3:+63453616 None:intergenic
GCAGAAGGATCTAAAGTGAC+TGG 0.529446 5_3:-63454222 Msa0824310:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.529446 5_3:-63454933 Msa0824310:CDS
TTCAGATATTTCAAGGAACC+CGG 0.530643 5_3:-63453806 Msa0824310:CDS
TGTACATGTGACCATGCTCC+TGG 0.533097 5_3:+63453138 None:intergenic
CACACAATTTCTGACCAGTT+GGG 0.534596 5_3:+63453617 None:intergenic
CTTATCACTGGCCTCTTCAA+AGG 0.538365 5_3:+63454401 None:intergenic
ATACTTCTAATAAGAGGATG+AGG 0.539745 5_3:-63454314 Msa0824310:CDS
TTCGACAACAACGATACCTC+GGG 0.542400 5_3:+63459490 None:intergenic
GTTGTATTGAAGAACAATGT+TGG 0.542736 5_3:-63454747 Msa0824310:CDS
TAGATCCTCAATATTGTTGG+AGG 0.547376 5_3:-63453264 Msa0824310:CDS
CGGAACAGTAGCTCTAGTGT+TGG 0.550429 5_3:+63454107 None:intergenic
TGGGTTTAAGCCTTCACAGA+AGG 0.553969 5_3:-63458859 Msa0824310:CDS
ACATGATGGTAACGCTGACC+AGG 0.555035 5_3:-63452889 Msa0824310:CDS
TGGATGCTGATTCAGAGAAA+GGG 0.555256 5_3:-63453489 Msa0824310:intron
CATTGATGATATTGCAACAA+GGG 0.560467 5_3:-63455265 Msa0824310:CDS
TAGAAGTGTATTGCCTCCAC+TGG 0.561132 5_3:-63453509 Msa0824310:CDS
CACACCCTCCAACAATATTG+AGG 0.562258 5_3:+63453259 None:intergenic
TCCAATAAATCCTTCTGTGA+AGG 0.562858 5_3:+63458849 None:intergenic
ATCAGATGGTTTCTGATACC+CGG 0.566808 5_3:+63457737 None:intergenic
CATGAGATCAGTGATGAGCT+TGG 0.567016 5_3:-63455107 Msa0824310:CDS
AGGAGTCTCAAGCTTATCAC+TGG 0.567487 5_3:+63454152 None:intergenic
AGGAGTCTCAAGCTTATCAC+TGG 0.567487 5_3:+63454389 None:intergenic
AGGAGTCTCAAGCTTATCAC+TGG 0.567487 5_3:+63454626 None:intergenic
CAGGAGCATGGTCACATGTA+CGG 0.568783 5_3:-63453032 Msa0824310:CDS
AGGAGTCTCAAGCTTATCAC+TGG 0.569049 5_3:+63454863 None:intergenic
AATACTTCTAATAAGAGGAT+GGG 0.569208 5_3:-63454789 Msa0824310:CDS
GCACAAGTTGGGAGATGTTG+AGG 0.575629 5_3:-63453228 Msa0824310:CDS
TGCAATGTGGATGATAGAAA+CGG 0.577256 5_3:+63455581 None:intergenic
TTCTCTGAATCAGCATCCAG+TGG 0.578278 5_3:+63453493 None:intergenic
GCACATAGATCTAATGTGAC+CGG 0.583259 5_3:-63453985 Msa0824310:CDS
TCTGGCAAGAGCACTGCAGA+AGG 0.583541 5_3:-63454237 Msa0824310:CDS
CTTATCACTGGCCTCTTCAG+AGG 0.587077 5_3:+63454164 None:intergenic
CTTATCACTGGCCTCTTCAG+AGG 0.587077 5_3:+63454638 None:intergenic
TCTGACAAGAGCACTGCAGA+AGG 0.590358 5_3:-63454948 Msa0824310:CDS
ATGCAACAAACCTCATCAGA+TGG 0.590404 5_3:+63457723 None:intergenic
TTCAGATATTTCAAGGACAC+CGG 0.592573 5_3:-63453908 Msa0824310:CDS
CCGAACACTATATCTAGTGT+CGG 0.592728 5_3:+63455055 None:intergenic
GTACATGTGACCATGCTCCT+GGG 0.597289 5_3:+63453034 None:intergenic
TAAACAGAAGGTAGTAGACC+AGG 0.600048 5_3:-63453156 Msa0824310:CDS
ATGAAGCCTACAACTACAGA+GGG 0.601758 5_3:-63455008 Msa0824310:CDS
TGATGAAGACTCAAAAGTAG+AGG 0.606537 5_3:-63457538 Msa0824310:CDS
TGTTGTCGAAAGATAAAAGG+TGG 0.608701 5_3:-63459477 Msa0824310:CDS
TATTATGGATGGTGATTCTG+GGG 0.611629 5_3:-63452988 Msa0824310:CDS
CAGCATCAATGCTTTGCATG+TGG 0.612556 5_3:-63456651 Msa0824310:CDS
TTTCGACAACAACGATACCT+CGG 0.613923 5_3:+63459489 None:intergenic
AAAGTCATAGCCCAGGAGCA+TGG 0.615793 5_3:-63453044 Msa0824310:CDS
AGAAAGGCAATTGAAAAGCA+TGG 0.615795 5_3:-63452786 Msa0824310:CDS
TGATAAAGATAAAGATGCTG+AGG 0.617526 5_3:-63456613 Msa0824310:intron
AGCCAACCACCTGAATGGAT+GGG 0.618326 5_3:+63452672 None:intergenic
TGGATGATAGAAACGGTCAC+AGG 0.618593 5_3:+63455588 None:intergenic
TCTGGCAAGAGCATTGCAGA+AGG 0.620198 5_3:-63454474 Msa0824310:CDS
TCTGGCAAGAGCATTGCAGA+AGG 0.620198 5_3:-63454711 Msa0824310:CDS
TTTGCACCCATCCATTCAGG+TGG 0.621598 5_3:-63452678 Msa0824310:CDS
ATTAGTTAAGCATGTTTCCG+AGG 0.622307 5_3:-63455551 Msa0824310:CDS
AAGGTAGTAGACCAGGAGCA+TGG 0.623141 5_3:-63453149 Msa0824310:CDS
GAACAGTAGCTCTAGTGTTG+GGG 0.624834 5_3:+63454109 None:intergenic
AGTATTGATTTCCGGAACAG+TGG 0.628769 5_3:+63454332 None:intergenic
AGTATTGATTTCCGGAACAG+TGG 0.628769 5_3:+63454806 None:intergenic
TGACTTGACTACTAAACAGA+AGG 0.634313 5_3:-63453168 Msa0824310:CDS
TTTCATGCTACTAAGGCGGA+TGG 0.635516 5_3:-63456860 Msa0824310:CDS
AGATCCTCAATATTGTTGGA+GGG 0.636517 5_3:-63453263 Msa0824310:CDS
GCTGCTGAAAATATTATGGA+TGG 0.638442 5_3:-63452999 Msa0824310:CDS
GTCATTTCATGCTACTAAGG+CGG 0.639994 5_3:-63456864 Msa0824310:CDS
CAAGCCAATGGCCAAGTGTG+AGG 0.640616 5_3:-63453650 Msa0824310:CDS
AATGTCAAGTAAGTGTGTGA+CGG 0.642271 5_3:-63453875 Msa0824310:CDS
GTTGAATTGAAGAACAACGT+TGG 0.643408 5_3:-63454510 Msa0824310:CDS
AAACTGCAAATTGCAACTCA+GGG 0.647686 5_3:+63455440 None:intergenic
CTTATCACTGGTCTCTCCAG+AGG 0.650001 5_3:+63454875 None:intergenic
ATTGCAACAAGGGCTTGGGA+AGG 0.650225 5_3:-63455255 Msa0824310:CDS
GGAAACATGCTTAACTAATG+GGG 0.652661 5_3:+63455555 None:intergenic
TCTGAATCAGCATCCAGTGG+AGG 0.655053 5_3:+63453496 None:intergenic
GTATCAGAAACCATCTGATG+AGG 0.656415 5_3:-63457733 Msa0824310:intron
GAACAGTGGCTCTAGTGTCG+GGG 0.663261 5_3:+63454346 None:intergenic
GAACAGTGTCTCTAGTGTCG+GGG 0.663261 5_3:+63454583 None:intergenic
GAACAGTGGCTCTAGTGTCG+GGG 0.663261 5_3:+63454820 None:intergenic
TGTGCATTGTGCGACAATGG+TGG 0.663369 5_3:-63457495 Msa0824310:CDS
TATCATCTCGAAGACAACGA+TGG 0.663743 5_3:-63459685 Msa0824310:CDS
GAACACTATATCTAGTGTCG+GGG 0.663913 5_3:+63455057 None:intergenic
GATGATATGACTTTGGACAA+CGG 0.668026 5_3:+63455413 None:intergenic
TCACATGTACAGTGACAAGT+TGG 0.674269 5_3:-63453126 Msa0824310:CDS
GGATCAAGCTTCAGAAACCG+AGG 0.675718 5_3:-63459456 Msa0824310:CDS
AAGTTGATGATAGCGAAAAG+GGG 0.678266 5_3:-63459606 Msa0824310:CDS
ACATTGATGATATTGCAACA+AGG 0.679482 5_3:-63455266 Msa0824310:CDS
GATGAAGCCTACAACTACAG+AGG 0.681264 5_3:-63455009 Msa0824310:CDS
AGGATAAGGCCATTACAATG+AGG 0.684721 5_3:-63453208 Msa0824310:CDS
TCACATGTACGGTGACAAGT+TGG 0.688440 5_3:-63453021 Msa0824310:CDS
ACTAATGGGGCAATGCAATG+TGG 0.689247 5_3:+63455568 None:intergenic
AAAGACTCAACAGATAATCG+AGG 0.689659 5_3:+63459364 None:intergenic
TCTAACAGGCATGATCGACA+GGG 0.691509 5_3:+63453528 None:intergenic
GAAGCCTACAACTACAGAGG+GGG 0.698643 5_3:-63455006 Msa0824310:CDS
TCTAACTGGTATGAAACCCG+AGG 0.718528 5_3:-63459506 Msa0824310:CDS
GGTGTGATGGAGCATGCATG+AGG 0.736595 5_3:-63456886 Msa0824310:CDS
TGAAGCCTACAACTACAGAG+GGG 0.764333 5_3:-63455007 Msa0824310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTATAATATATTTA+AGG - chr5_3:63454693-63454712 Msa0824310:CDS 0.0%
!! AAATTTAATCATTCAAAATA+TGG - chr5_3:63453589-63453608 Msa0824310:CDS 10.0%
!! AAATTTAAAAATATTTGTTC+AGG - chr5_3:63454438-63454457 Msa0824310:CDS 10.0%
!! AAAAAAAAATTAGGATATAT+TGG + chr5_3:63455362-63455381 None:intergenic 10.0%
!! TTTCATCTTAATATAAAATT+TGG + chr5_3:63455838-63455857 None:intergenic 10.0%
!! TTTCAATTATCTAATCATAA+TGG + chr5_3:63453294-63453313 None:intergenic 15.0%
!! ATTAGATAATTGAAAATGTT+TGG - chr5_3:63453299-63453318 Msa0824310:intron 15.0%
!!! ATATATGATTTTAGTTTCAT+AGG - chr5_3:63453871-63453890 Msa0824310:CDS 15.0%
!!! TAGTTTTTTGAATTTTGAAT+GGG - chr5_3:63453917-63453936 Msa0824310:CDS 15.0%
!!! CAAGAAATTTTTAAAAAATC+AGG - chr5_3:63455057-63455076 Msa0824310:CDS 15.0%
!!! AAATGGTAAAAACTTTTTAT+GGG + chr5_3:63455339-63455358 None:intergenic 15.0%
!! AAAAACTTTGTCAAAAATTT+AGG + chr5_3:63456370-63456389 None:intergenic 15.0%
!! AAAAAAAAAGACAATTAAAC+AGG + chr5_3:63456559-63456578 None:intergenic 15.0%
!!! TTGTCTTTTTTTTTTTTATC+TGG - chr5_3:63456565-63456584 Msa0824310:intron 15.0%
!! TTGATTGATTAAGATATTAA+TGG - chr5_3:63456600-63456619 Msa0824310:intron 15.0%
!!! ATTAAGATATTAATGGTTTT+TGG - chr5_3:63456607-63456626 Msa0824310:intron 15.0%
!! TAACTTCATTTATCATTATT+TGG - chr5_3:63457169-63457188 Msa0824310:intron 15.0%
!! AATTGATAAAAATGATAGAA+AGG - chr5_3:63459506-63459525 Msa0824310:CDS 15.0%
!!! TTTTAATATATTAACGTAAG+AGG - chr5_3:63459680-63459699 Msa0824310:CDS 15.0%
!! TTTAATATATTAACGTAAGA+GGG - chr5_3:63459681-63459700 Msa0824310:CDS 15.0%
!! ATGCAAATGATTTAGTATTT+GGG - chr5_3:63453028-63453047 Msa0824310:CDS 20.0%
!! AACAATTTATGCAAATAAAC+AGG + chr5_3:63453183-63453202 None:intergenic 20.0%
!!! AAATTTTCATTTTCCTTAAG+TGG - chr5_3:63453700-63453719 Msa0824310:CDS 20.0%
!!! GTAGTTTTTTGAATTTTGAA+TGG - chr5_3:63453916-63453935 Msa0824310:CDS 20.0%
!! TTCAGATTGAATAAAAAATG+AGG + chr5_3:63454051-63454070 None:intergenic 20.0%
!!! TTTTTTATTCAATCTGAATG+AGG - chr5_3:63454053-63454072 Msa0824310:CDS 20.0%
!! ACAAACTATTCGTTAATTTA+AGG + chr5_3:63454288-63454307 None:intergenic 20.0%
!!! AGAACTTTGTTATGAATAAT+AGG - chr5_3:63454904-63454923 Msa0824310:CDS 20.0%
!! ATATAGACAATTCAAATTAG+TGG + chr5_3:63455251-63455270 None:intergenic 20.0%
!! TTATGGGAGATAAATTTAAA+TGG + chr5_3:63455323-63455342 None:intergenic 20.0%
!!! GAAATGGTAAAAACTTTTTA+TGG + chr5_3:63455340-63455359 None:intergenic 20.0%
!! AAATTAGGATATATTGGAAA+TGG + chr5_3:63455356-63455375 None:intergenic 20.0%
!!! TTGTTTTAAAAAGACTAACT+AGG + chr5_3:63455804-63455823 None:intergenic 20.0%
!! TGACTTAATTCATATTGTAT+AGG - chr5_3:63456974-63456993 Msa0824310:intron 20.0%
!! GACTTAATTCATATTGTATA+GGG - chr5_3:63456975-63456994 Msa0824310:intron 20.0%
!! ACTTAATTCATATTGTATAG+GGG - chr5_3:63456976-63456995 Msa0824310:intron 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_3:63457231-63457250 None:intergenic 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_3:63457231-63457250 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_3:63457513-63457532 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_3:63457514-63457533 Msa0824310:CDS 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_3:63457231-63457250 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_3:63457513-63457532 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_3:63457514-63457533 Msa0824310:CDS 20.0%
!!! AATTTTATATGAACTCTTAC+AGG + chr5_3:63457942-63457961 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_3:63457513-63457532 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_3:63457514-63457533 Msa0824310:CDS 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_3:63457231-63457250 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_3:63457513-63457532 None:intergenic 20.0%
!!! AAACTTATTTGATTTGATTC+CGG + chr5_3:63458524-63458543 None:intergenic 20.0%
!!! TTTTTCTTACTTTCATTTAC+AGG + chr5_3:63459393-63459412 None:intergenic 20.0%
!!! TGTAATGTACATTTAGATTT+TGG - chr5_3:63459707-63459726 Msa0824310:CDS 20.0%
!! TTTCTGTTTTACCGTTTAAA+TGG - chr5_3:63452660-63452679 Msa0824310:exon 25.0%
! GATGCAAATGATTTAGTATT+TGG - chr5_3:63453027-63453046 Msa0824310:CDS 25.0%
! TGCAAATGATTTAGTATTTG+GGG - chr5_3:63453029-63453048 Msa0824310:CDS 25.0%
! AAAAAATAAGCCAATCCAAA+CGG + chr5_3:63453055-63453074 None:intergenic 25.0%
!! TTTTTGAATTTTGAATGGGA+TGG - chr5_3:63453921-63453940 Msa0824310:CDS 25.0%
!!! GTTTACATTGTTATTTGAGT+GGG - chr5_3:63453993-63454012 Msa0824310:CDS 25.0%
! ACTAGCTCAAAGAATAAATA+AGG + chr5_3:63454088-63454107 None:intergenic 25.0%
! AGAATATCAAGTTCAAGAAT+TGG - chr5_3:63454134-63454153 Msa0824310:CDS 25.0%
!!! GATTTTTGATAGTGCTTTAT+TGG - chr5_3:63454190-63454209 Msa0824310:CDS 25.0%
!!! ATTTGCACACATCTTATTTT+TGG - chr5_3:63454342-63454361 Msa0824310:CDS 25.0%
!!! ACACATCTTATTTTTGGATA+AGG - chr5_3:63454348-63454367 Msa0824310:CDS 25.0%
!!! CACATCTTATTTTTGGATAA+GGG - chr5_3:63454349-63454368 Msa0824310:CDS 25.0%
! ATTAAAATGAAGTACACATG+TGG + chr5_3:63454501-63454520 None:intergenic 25.0%
! GTATGAATTCTTCTTCATAT+TGG - chr5_3:63454848-63454867 Msa0824310:CDS 25.0%
!!! TACTAAAAAGCATCATTAGT+CGG + chr5_3:63454940-63454959 None:intergenic 25.0%
!!! ACTAATGATGCTTTTTAGTA+TGG - chr5_3:63454940-63454959 Msa0824310:CDS 25.0%
!! TTATTGTCTGAAACTCATAT+GGG + chr5_3:63455152-63455171 None:intergenic 25.0%
!! TTTATTGTCTGAAACTCATA+TGG + chr5_3:63455153-63455172 None:intergenic 25.0%
! TATAGTTCATCTGTATCTTT+AGG + chr5_3:63455214-63455233 None:intergenic 25.0%
! TTTAGAGATGATTCAAAGTA+GGG + chr5_3:63455294-63455313 None:intergenic 25.0%
! AAAGTTAACAAATTTCTTGC+AGG - chr5_3:63455401-63455420 Msa0824310:CDS 25.0%
! AAAAAGACTAACTAGGATAA+CGG + chr5_3:63455797-63455816 None:intergenic 25.0%
!! TCATGTGTAATTGAAGATTT+TGG - chr5_3:63455893-63455912 Msa0824310:intron 25.0%
! TAATTCAAATTAACCGAATG+AGG + chr5_3:63456292-63456311 None:intergenic 25.0%
!!! ATTATTTTTCTCAAGATCCT+CGG + chr5_3:63456777-63456796 None:intergenic 25.0%
! TTGAGAAAAATAATGCTGAT+GGG - chr5_3:63456783-63456802 Msa0824310:intron 25.0%
! CTTAATTCATATTGTATAGG+GGG - chr5_3:63456977-63456996 Msa0824310:intron 25.0%
! TATATAAGGATACGATTGTT+TGG + chr5_3:63457086-63457105 None:intergenic 25.0%
! ACACTTACAAGCAATATATA+AGG + chr5_3:63457100-63457119 None:intergenic 25.0%
! ATTAACAAGGACAAATTTGA+AGG + chr5_3:63457141-63457160 None:intergenic 25.0%
! ATGATAAATGAAGTTACACA+GGG + chr5_3:63457165-63457184 None:intergenic 25.0%
! AATGATAAATGAAGTTACAC+AGG + chr5_3:63457166-63457185 None:intergenic 25.0%
! AATACTTCTAATAAGAGGAT+GGG - chr5_3:63457519-63457538 Msa0824310:CDS 25.0%
! TTTCTTGTTCAGATATTTCA+AGG - chr5_3:63458495-63458514 Msa0824310:intron 25.0%
!!! AACTTATTTGATTTGATTCC+GGG + chr5_3:63458523-63458542 None:intergenic 25.0%
! AAGTCAAATTCAAATTTGTC+TGG - chr5_3:63458560-63458579 Msa0824310:intron 25.0%
! AGTCAAATTCAAATTTGTCT+GGG - chr5_3:63458561-63458580 Msa0824310:intron 25.0%
!!! TCAGATCTTTCATTTGATTT+TGG + chr5_3:63458620-63458639 None:intergenic 25.0%
! ATCAAATGAAAGATCTGAAA+CGG - chr5_3:63458622-63458641 Msa0824310:intron 25.0%
! TAATATTTGTCACTACAATG+CGG - chr5_3:63458917-63458936 Msa0824310:intron 25.0%
!!! TACATTTAGATTTTGGAGTA+TGG - chr5_3:63459714-63459733 Msa0824310:CDS 25.0%
!! AAAGTTGATGATAGCGAAAA+GGG - chr5_3:63452701-63452720 Msa0824310:CDS 30.0%
! GATTATCTGTTGAGTCTTTT+TGG - chr5_3:63452948-63452967 Msa0824310:CDS 30.0%
AAAAATAAGCCAATCCAAAC+AGG - chr5_3:63453215-63453234 Msa0824310:CDS 30.0%
! TTTAAAGTCAAACACATCAG+CGG - chr5_3:63453339-63453358 Msa0824310:intron 30.0%
!! TATTGGCTTAGCTAATTCTA+AGG - chr5_3:63453518-63453537 Msa0824310:CDS 30.0%
AGATATTGTGATGTTGAACT+TGG - chr5_3:63453560-63453579 Msa0824310:CDS 30.0%
ACAAGTACAATTTGAATCTC+AGG + chr5_3:63453619-63453638 None:intergenic 30.0%
AATAAGCCAAAAACAAACAC+AGG + chr5_3:63453781-63453800 None:intergenic 30.0%
!!! TTTTTGGCTTATTGTCTTCT+TGG - chr5_3:63453788-63453807 Msa0824310:CDS 30.0%
GTACAAAATCAGCAATGATA+TGG - chr5_3:63453819-63453838 Msa0824310:CDS 30.0%
! GTTATTTGAGTCAAAAGCAT+TGG - chr5_3:63453971-63453990 Msa0824310:CDS 30.0%
!! GGTTTACATTGTTATTTGAG+TGG - chr5_3:63453992-63454011 Msa0824310:CDS 30.0%
ATGCACGAAACTAAATAACT+CGG - chr5_3:63454025-63454044 Msa0824310:CDS 30.0%
TGAATATTGCAAAGTAGTGT+TGG - chr5_3:63454221-63454240 Msa0824310:CDS 30.0%
GAGCAAAGAGATTGTATTAA+AGG + chr5_3:63454264-63454283 None:intergenic 30.0%
! CTTTGTTTGATTATGATGCT+GGG - chr5_3:63454461-63454480 Msa0824310:CDS 30.0%
! CTTTAGAGATGATTCAAAGT+AGG + chr5_3:63455295-63455314 None:intergenic 30.0%
GAATCTTTATGTGATTCTCT+TGG - chr5_3:63455475-63455494 Msa0824310:CDS 30.0%
AGTTTCTACATCATTATCTG+AGG + chr5_3:63455570-63455589 None:intergenic 30.0%
TGATAAAGATAAAGATGCTG+AGG - chr5_3:63455695-63455714 Msa0824310:intron 30.0%
AAAAGACTAACTAGGATAAC+GGG + chr5_3:63455796-63455815 None:intergenic 30.0%
! GTTATGTTTGTGACATCTTT+TGG - chr5_3:63455915-63455934 Msa0824310:intron 30.0%
TACATATATCCCAAATGAGA+AGG - chr5_3:63456073-63456092 Msa0824310:intron 30.0%
ACATATATCCCAAATGAGAA+GGG - chr5_3:63456074-63456093 Msa0824310:intron 30.0%
!! TAATTTGTTCTTTGTCCTTC+TGG - chr5_3:63456133-63456152 Msa0824310:intron 30.0%
! AATTTGTTCTTTGTCCTTCT+GGG - chr5_3:63456134-63456153 Msa0824310:intron 30.0%
AGAATCAAATACAACCTACA+TGG + chr5_3:63456263-63456282 None:intergenic 30.0%
! AAGCCTTATATAGAAGTATG+AGG - chr5_3:63456321-63456340 Msa0824310:intron 30.0%
TTGCCTCATACTTCTATATA+AGG + chr5_3:63456327-63456346 None:intergenic 30.0%
CTCAACTATTCAAAAACTGT+CGG + chr5_3:63456420-63456439 None:intergenic 30.0%
! TAGAGCTTTGATATGCTTTA+TGG - chr5_3:63456646-63456665 Msa0824310:CDS 30.0%
CTTGAGAAAAATAATGCTGA+TGG - chr5_3:63456782-63456801 Msa0824310:intron 30.0%
GAAAAAGATAGAACTTACGT+AGG + chr5_3:63456932-63456951 None:intergenic 30.0%
!!! GTTGATTCTGAAGTTGATTT+TGG - chr5_3:63456999-63457018 Msa0824310:intron 30.0%
! ACATTGATGATATTGCAACA+AGG - chr5_3:63457042-63457061 Msa0824310:intron 30.0%
! CATTGATGATATTGCAACAA+GGG - chr5_3:63457043-63457062 Msa0824310:intron 30.0%
TATTGCTTGTAAGTGTTATG+TGG - chr5_3:63457104-63457123 Msa0824310:intron 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_3:63457399-63457418 Msa0824310:intron 30.0%
CAATACTTCTAATAAGAGGA+TGG - chr5_3:63457518-63457537 Msa0824310:CDS 30.0%
GTTGTATTGAAGAACAATGT+TGG - chr5_3:63457561-63457580 Msa0824310:CDS 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_3:63457399-63457418 Msa0824310:intron 30.0%
ATACTTCTAATAAGAGGAAG+AGG - chr5_3:63457757-63457776 Msa0824310:CDS 30.0%
ATACTTCTAATAAGAGGATG+AGG - chr5_3:63457520-63457539 Msa0824310:CDS 30.0%
GTTGAATTGAAGAACAATGT+TGG - chr5_3:63458035-63458054 Msa0824310:intron 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_3:63457399-63457418 Msa0824310:intron 30.0%
GTTGAATTGAAGAACAATGT+TGG - chr5_3:63458035-63458054 Msa0824310:intron 30.0%
!!! TTTTTGCTACCAGTTTTAGA+AGG + chr5_3:63458356-63458375 None:intergenic 30.0%
! AATCTGGTTCAGATATTTCA+AGG - chr5_3:63458393-63458412 Msa0824310:intron 30.0%
TTTGACTAAAAACAAGCCAA+TGG - chr5_3:63458646-63458665 Msa0824310:intron 30.0%
TTGTGTGCTTCTATGAATAA+AGG - chr5_3:63458707-63458726 Msa0824310:intron 30.0%
! TGTGATAAAAAAGCACAAGT+TGG - chr5_3:63459068-63459087 Msa0824310:intron 30.0%
! GTGATAAAAAAGCACAAGTT+GGG - chr5_3:63459069-63459088 Msa0824310:intron 30.0%
GTTGGCTGCTAAAAATATTA+CGG - chr5_3:63459200-63459219 Msa0824310:intron 30.0%
AATATTATGGATGGTGATTC+TGG - chr5_3:63459318-63459337 Msa0824310:intron 30.0%
ATATTATGGATGGTGATTCT+GGG - chr5_3:63459319-63459338 Msa0824310:intron 30.0%
! GACTTTAAGAGATCATGATT+CGG + chr5_3:63459357-63459376 None:intergenic 30.0%
AAGAAAAAAAGCTCACATGA+TGG - chr5_3:63459405-63459424 Msa0824310:CDS 30.0%
GCTACTCGTAAATCAAAATT+TGG - chr5_3:63459588-63459607 Msa0824310:CDS 30.0%
GCAAGATATCTGACTAATTT+AGG + chr5_3:63459744-63459763 None:intergenic 30.0%
AAAGGAAATCCACGACATTA+AGG - chr5_3:63452552-63452571 Msa0824310:three_prime_UTR 35.0%
AAGGAAATCCACGACATTAA+GGG - chr5_3:63452553-63452572 Msa0824310:three_prime_UTR 35.0%
GGTAAAACAGAAAAACACAC+AGG + chr5_3:63452653-63452672 None:intergenic 35.0%
!! TTAGAAGCGCTCCATTTAAA+CGG + chr5_3:63452674-63452693 None:intergenic 35.0%
! CTTTTCGCTATCATCAACTT+TGG + chr5_3:63452702-63452721 None:intergenic 35.0%
!! CAAAGTTGATGATAGCGAAA+AGG - chr5_3:63452700-63452719 Msa0824310:CDS 35.0%
!! AAGTTGATGATAGCGAAAAG+GGG - chr5_3:63452702-63452721 Msa0824310:CDS 35.0%
!! GGGTTGAAGATATTTTTGCA+TGG - chr5_3:63452722-63452741 Msa0824310:CDS 35.0%
! TTTTCATGGAGGTTATTGCA+TGG - chr5_3:63452771-63452790 Msa0824310:CDS 35.0%
CGTTGTTGTCGAAAGATAAA+AGG - chr5_3:63452828-63452847 Msa0824310:CDS 35.0%
TGTTGTCGAAAGATAAAAGG+TGG - chr5_3:63452831-63452850 Msa0824310:CDS 35.0%
!! GTTTTCTGAAAGCTTTTCCT+CGG + chr5_3:63452872-63452891 None:intergenic 35.0%
AAAGACTCAACAGATAATCG+AGG + chr5_3:63452947-63452966 None:intergenic 35.0%
! AAGGATTTGAGGTATTTCTC+TGG - chr5_3:63452989-63453008 Msa0824310:CDS 35.0%
! TAATGGTGATGATTGACTGA+CGG + chr5_3:63453277-63453296 None:intergenic 35.0%
! AATGCTGTTTGTAGCTCTTA+TGG - chr5_3:63453429-63453448 Msa0824310:intron 35.0%
! ATGCTGTTTGTAGCTCTTAT+GGG - chr5_3:63453430-63453449 Msa0824310:intron 35.0%
TCCAATAAATCCTTCTGTGA+AGG + chr5_3:63453462-63453481 None:intergenic 35.0%
TTGGATCATATGTCTCTGAT+TGG - chr5_3:63453477-63453496 Msa0824310:intron 35.0%
GAAGCTACTACAAGAGATAT+TGG - chr5_3:63453501-63453520 Msa0824310:CDS 35.0%
!! AAACCACCTGTGTTTGTTTT+TGG - chr5_3:63453772-63453791 Msa0824310:CDS 35.0%
!! TATTGTCTTCTTGGTTTTCG+AGG - chr5_3:63453797-63453816 Msa0824310:CDS 35.0%
TCAAGAATTGGATTCCTTAC+AGG - chr5_3:63454146-63454165 Msa0824310:CDS 35.0%
TTATGCAGTTCAATCCTGTA+AGG + chr5_3:63454163-63454182 None:intergenic 35.0%
TTACAGGATTGAACTGCATA+AGG - chr5_3:63454162-63454181 Msa0824310:CDS 35.0%
!! TATTGCAAAGTAGTGTTGGT+TGG - chr5_3:63454225-63454244 Msa0824310:CDS 35.0%
TGTGCAAAAGAACGACTAAA+AGG + chr5_3:63454384-63454403 None:intergenic 35.0%
!! GCTTTGTTTGATTATGATGC+TGG - chr5_3:63454460-63454479 Msa0824310:CDS 35.0%
! AGCTTTTGCTCTCAGTTTTA+GGG - chr5_3:63454541-63454560 Msa0824310:CDS 35.0%
AGGTTATACGTCTTGATTTC+AGG - chr5_3:63454713-63454732 Msa0824310:CDS 35.0%
TGATGAAGACTCAAAAGTAG+AGG - chr5_3:63454770-63454789 Msa0824310:CDS 35.0%
TAGTATGGTGTGCAATAATC+TGG - chr5_3:63454955-63454974 Msa0824310:CDS 35.0%
AGTATGGTGTGCAATAATCT+GGG - chr5_3:63454956-63454975 Msa0824310:CDS 35.0%
TATGCCCCACATAAATTTAG+TGG - chr5_3:63455124-63455143 Msa0824310:intron 35.0%
ATGCCCCACATAAATTTAGT+GGG - chr5_3:63455125-63455144 Msa0824310:intron 35.0%
! ATGATTCAAAGTAGGGCATT+TGG + chr5_3:63455287-63455306 None:intergenic 35.0%
!!! TTCTCTTGGTTTTACCAAGA+AGG - chr5_3:63455489-63455508 Msa0824310:CDS 35.0%
ACATACATCAACTTCCTTCT+TGG + chr5_3:63455506-63455525 None:intergenic 35.0%
TTCTACATCATTATCTGAGG+TGG + chr5_3:63455567-63455586 None:intergenic 35.0%
!! TCCTGCAATTATTTTGCAAC+AGG + chr5_3:63455600-63455619 None:intergenic 35.0%
AAAGACTAACTAGGATAACG+GGG + chr5_3:63455795-63455814 None:intergenic 35.0%
!!! CTGATTTTCTTTGACTTGCT+AGG - chr5_3:63455995-63456014 Msa0824310:intron 35.0%
CATATATCCCAAATGAGAAG+GGG - chr5_3:63456075-63456094 Msa0824310:intron 35.0%
! CGACAGTTTTTGAATAGTTG+AGG - chr5_3:63456418-63456437 Msa0824310:intron 35.0%
GTATTCTTTCAAGCACAATC+AGG + chr5_3:63456460-63456479 None:intergenic 35.0%
GATATGCTACATAATGTGCA+AGG + chr5_3:63456482-63456501 None:intergenic 35.0%
CATCAAAATCAACACATCAC+AGG + chr5_3:63456527-63456546 None:intergenic 35.0%
! AGGGGGATTCTCAAAATTTT+AGG + chr5_3:63456673-63456692 None:intergenic 35.0%
ACATTTAAAGACCTGAAAGG+GGG + chr5_3:63456690-63456709 None:intergenic 35.0%
CACATTTAAAGACCTGAAAG+GGG + chr5_3:63456691-63456710 None:intergenic 35.0%
GCACATTTAAAGACCTGAAA+GGG + chr5_3:63456692-63456711 None:intergenic 35.0%
AGCACATTTAAAGACCTGAA+AGG + chr5_3:63456693-63456712 None:intergenic 35.0%
TGCAATGTGGATGATAGAAA+CGG + chr5_3:63456730-63456749 None:intergenic 35.0%
GGAAACATGCTTAACTAATG+GGG + chr5_3:63456756-63456775 None:intergenic 35.0%
CGGAAACATGCTTAACTAAT+GGG + chr5_3:63456757-63456776 None:intergenic 35.0%
TCGGAAACATGCTTAACTAA+TGG + chr5_3:63456758-63456777 None:intergenic 35.0%
ATTAGTTAAGCATGTTTCCG+AGG - chr5_3:63456757-63456776 Msa0824310:intron 35.0%
CAGACACAGCAAAAATGAAT+TGG + chr5_3:63456824-63456843 None:intergenic 35.0%
TGAAGGCTTGGAAAATAAGA+TGG - chr5_3:63456844-63456863 Msa0824310:CDS 35.0%
AAACTGCAAATTGCAACTCA+GGG + chr5_3:63456871-63456890 None:intergenic 35.0%
GATGATATGACTTTGGACAA+CGG + chr5_3:63456898-63456917 None:intergenic 35.0%
CATTTGCGATGATATGACTT+TGG + chr5_3:63456905-63456924 None:intergenic 35.0%
GTAGGCTTCATCTTCTTATT+AGG + chr5_3:63457291-63457310 None:intergenic 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_3:63457408-63457427 None:intergenic 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_3:63457408-63457427 None:intergenic 35.0%
GTTGAATTGAAGAACAACGT+TGG - chr5_3:63457798-63457817 Msa0824310:intron 35.0%
AAACTGCCTTCTAGCAAAAT+TGG - chr5_3:63457873-63457892 Msa0824310:intron 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_3:63457408-63457427 None:intergenic 35.0%
!! GTTGGCTTTGTTAAATCATC+TGG - chr5_3:63458290-63458309 Msa0824310:intron 35.0%
!!! AGTTTTAGAAGGCAGTTTTC+CGG + chr5_3:63458345-63458364 None:intergenic 35.0%
TCTACTGAAAAGATCGAATC+TGG - chr5_3:63458377-63458396 Msa0824310:intron 35.0%
TTCAGATATTTCAAGGACAC+CGG - chr5_3:63458400-63458419 Msa0824310:intron 35.0%
CTTGACATTTCCTTTGATTC+CGG + chr5_3:63458422-63458441 None:intergenic 35.0%
AATGTCAAGTAAGTGTGTGA+CGG - chr5_3:63458433-63458452 Msa0824310:intron 35.0%
! CTTTTCAGACGAATTCTTTG+AGG + chr5_3:63458471-63458490 None:intergenic 35.0%
CTCAAAGAATTCGTCTGAAA+AGG - chr5_3:63458469-63458488 Msa0824310:intron 35.0%
TTCAGATATTTCAAGGAACC+CGG - chr5_3:63458502-63458521 Msa0824310:intron 35.0%
ATCCCAAGTACATAAGCTAA+CGG + chr5_3:63458983-63459002 None:intergenic 35.0%
TGCTAGATCCTCAATATTGT+TGG - chr5_3:63459041-63459060 Msa0824310:intron 35.0%
TAGATCCTCAATATTGTTGG+AGG - chr5_3:63459044-63459063 Msa0824310:intron 35.0%
AGATCCTCAATATTGTTGGA+GGG - chr5_3:63459045-63459064 Msa0824310:intron 35.0%
TGACTTGACTACTAAACAGA+AGG - chr5_3:63459140-63459159 Msa0824310:intron 35.0%
AAATATTACGGAGAGTAAGC+TGG - chr5_3:63459212-63459231 Msa0824310:intron 35.0%
TAAACAAAAAGTCATAGCCC+AGG - chr5_3:63459257-63459276 Msa0824310:intron 35.0%
GTTGGCTGCTGAAAATATTA+TGG - chr5_3:63459305-63459324 Msa0824310:intron 35.0%
GCTGCTGAAAATATTATGGA+TGG - chr5_3:63459309-63459328 Msa0824310:intron 35.0%
TATTATGGATGGTGATTCTG+GGG - chr5_3:63459320-63459339 Msa0824310:intron 35.0%
AGAAAGGCAATTGAAAAGCA+TGG - chr5_3:63459522-63459541 Msa0824310:CDS 35.0%
AGTTTCATCCCTTAATGTCG+TGG + chr5_3:63452564-63452583 None:intergenic 40.0%
TATCATCTCGAAGACAACGA+TGG - chr5_3:63452623-63452642 Msa0824310:three_prime_UTR 40.0%
! GTTTAAATGGAGCGCTTCTA+AGG - chr5_3:63452673-63452692 Msa0824310:CDS 40.0%
TTGCATGGATCTGCTGATAA+TGG - chr5_3:63452737-63452756 Msa0824310:CDS 40.0%
TGCATGGATCTGCTGATAAT+GGG - chr5_3:63452738-63452757 Msa0824310:CDS 40.0%
GCATGGAAGTTTGATCTAAC+TGG - chr5_3:63452788-63452807 Msa0824310:CDS 40.0%
TTTCGACAACAACGATACCT+CGG + chr5_3:63452822-63452841 None:intergenic 40.0%
!!! TTTTTGGAGCAACATGTGCA+AGG - chr5_3:63452964-63452983 Msa0824310:CDS 40.0%
TGTGCAAGGATAAGGATTTG+AGG - chr5_3:63452978-63452997 Msa0824310:CDS 40.0%
! ATTTAGTATTTGGGGCCGTT+TGG - chr5_3:63453037-63453056 Msa0824310:CDS 40.0%
GCCTTCACAGAAGGATTTAT+TGG - chr5_3:63453458-63453477 Msa0824310:intron 40.0%
AAGCCAAAAACAAACACAGG+TGG + chr5_3:63453778-63453797 None:intergenic 40.0%
! ATTTTGAATGGGATGGTGTC+TGG - chr5_3:63453928-63453947 Msa0824310:CDS 40.0%
!! CATTGTTATTTGAGTGGGAG+AGG - chr5_3:63453998-63454017 Msa0824310:CDS 40.0%
! CAGCTTTTGCTCTCAGTTTT+AGG - chr5_3:63454540-63454559 Msa0824310:CDS 40.0%
!! GCTTTTGCTCTCAGTTTTAG+GGG - chr5_3:63454542-63454561 Msa0824310:CDS 40.0%
ATCAGATGGTTTCTGATACC+CGG + chr5_3:63454574-63454593 None:intergenic 40.0%
GTATCAGAAACCATCTGATG+AGG - chr5_3:63454575-63454594 Msa0824310:CDS 40.0%
ATGCAACAAACCTCATCAGA+TGG + chr5_3:63454588-63454607 None:intergenic 40.0%
! TTTTGTGCATTGTGCGACAA+TGG - chr5_3:63454810-63454829 Msa0824310:CDS 40.0%
GGTACAAAATGCTAATGCAC+TGG - chr5_3:63454977-63454996 Msa0824310:CDS 40.0%
GGTCCCACTAAATTTATGTG+GGG + chr5_3:63455131-63455150 None:intergenic 40.0%
GGGTCCCACTAAATTTATGT+GGG + chr5_3:63455132-63455151 None:intergenic 40.0%
TGGGTCCCACTAAATTTATG+TGG + chr5_3:63455133-63455152 None:intergenic 40.0%
CAAATTTCTTGCAGGTGTGA+TGG - chr5_3:63455409-63455428 Msa0824310:CDS 40.0%
GAGGTCATTTCATGCTACTA+AGG - chr5_3:63455441-63455460 Msa0824310:CDS 40.0%
GTCATTTCATGCTACTAAGG+CGG - chr5_3:63455444-63455463 Msa0824310:CDS 40.0%
GCCTGTTGCAAAATAATTGC+AGG - chr5_3:63455596-63455615 Msa0824310:CDS 40.0%
ACATGATGACATGAAAGCAG+AGG + chr5_3:63455879-63455898 None:intergenic 40.0%
TGAAATAAACCATCCAGTCC+AGG - chr5_3:63455954-63455973 Msa0824310:intron 40.0%
GAAATAAACCATCCAGTCCA+GGG - chr5_3:63455955-63455974 Msa0824310:intron 40.0%
!! GAGTTTGTTGAATGGGAAGT+GGG + chr5_3:63456046-63456065 None:intergenic 40.0%
CACTTCCCATTCAACAAACT+CGG - chr5_3:63456045-63456064 Msa0824310:intron 40.0%
ACTTCCCATTCAACAAACTC+GGG - chr5_3:63456046-63456065 Msa0824310:intron 40.0%
!! TTCACCCGAGTTTGTTGAAT+GGG + chr5_3:63456053-63456072 None:intergenic 40.0%
!! ATTCACCCGAGTTTGTTGAA+TGG + chr5_3:63456054-63456073 None:intergenic 40.0%
! CGTGCATGTTTGGGATATAT+GGG + chr5_3:63456104-63456123 None:intergenic 40.0%
! ACGTGCATGTTTGGGATATA+TGG + chr5_3:63456105-63456124 None:intergenic 40.0%
AAGATTCGACGTGCATGTTT+GGG + chr5_3:63456113-63456132 None:intergenic 40.0%
AAAGATTCGACGTGCATGTT+TGG + chr5_3:63456114-63456133 None:intergenic 40.0%
TTCATGTAGCAGTTAGCAGA+AGG - chr5_3:63456199-63456218 Msa0824310:intron 40.0%
TCATGTAGCAGTTAGCAGAA+GGG - chr5_3:63456200-63456219 Msa0824310:intron 40.0%
TGATTCTGCGATACCTCATT+CGG - chr5_3:63456276-63456295 Msa0824310:intron 40.0%
!! AGGCATGTGTCATTTACAAC+AGG + chr5_3:63456350-63456369 None:intergenic 40.0%
CTATTCAAAAACTGTCGGCA+AGG + chr5_3:63456415-63456434 None:intergenic 40.0%
AGTGCATTGTAGGAAAACGA+TGG + chr5_3:63456504-63456523 None:intergenic 40.0%
!! ATTTTGAGAATCCCCCTTTC+AGG - chr5_3:63456676-63456695 Msa0824310:CDS 40.0%
!! CATTTTTGCTGTGTCTGTGA+AGG - chr5_3:63456827-63456846 Msa0824310:CDS 40.0%
CAAACTGCAAATTGCAACTC+AGG + chr5_3:63456872-63456891 None:intergenic 40.0%
ATGATATTGCAACAAGGGCT+TGG - chr5_3:63457048-63457067 Msa0824310:intron 40.0%
TGATATTGCAACAAGGGCTT+GGG - chr5_3:63457049-63457068 Msa0824310:intron 40.0%
! AGTTACACAGGGCATTAACA+AGG + chr5_3:63457154-63457173 None:intergenic 40.0%
ATGAGATCAGTGATGAGCTT+GGG - chr5_3:63457202-63457221 Msa0824310:intron 40.0%
GAACACTATATCTAGTGTCG+GGG + chr5_3:63457254-63457273 None:intergenic 40.0%
CGAACACTATATCTAGTGTC+GGG + chr5_3:63457255-63457274 None:intergenic 40.0%
CCGAACACTATATCTAGTGT+CGG + chr5_3:63457256-63457275 None:intergenic 40.0%
CCGACACTAGATATAGTGTT+CGG - chr5_3:63457253-63457272 Msa0824310:intron 40.0%
CGACACTAGATATAGTGTTC+GGG - chr5_3:63457254-63457273 Msa0824310:intron 40.0%
ATGAAGCCTACAACTACAGA+GGG - chr5_3:63457300-63457319 Msa0824310:intron 40.0%
!! AGTATTGATTTCCGGAACAG+TGG + chr5_3:63457505-63457524 None:intergenic 40.0%
!! GTTGGCTCTGTTAAATCATC+TGG - chr5_3:63457579-63457598 Msa0824310:intron 40.0%
!! GTTGGCTCTGTTAAATCATC+TGG - chr5_3:63457579-63457598 Msa0824310:intron 40.0%
! TTGCTGCCAATTTTGCTAGA+AGG + chr5_3:63457882-63457901 None:intergenic 40.0%
! CAGCAAAAAGTCCTTTGAAG+AGG - chr5_3:63457896-63457915 Msa0824310:intron 40.0%
!! AGTATTGATTTCCGGAACAG+TGG + chr5_3:63457505-63457524 None:intergenic 40.0%
TCAACTCTCTCTGTAGTTGT+AGG + chr5_3:63458020-63458039 None:intergenic 40.0%
!! GTTGGCTCTGTTAAATCATC+TGG - chr5_3:63457579-63457598 Msa0824310:intron 40.0%
TCAACTCTCTCTGTAGATGT+AGG + chr5_3:63458257-63458276 None:intergenic 40.0%
GCACATAGATCTAATGTGAC+CGG - chr5_3:63458323-63458342 Msa0824310:intron 40.0%
!! GGAAAACTGCCTTCTAAAAC+TGG - chr5_3:63458344-63458363 Msa0824310:intron 40.0%
TTGTCTGGGAAAGTGATTTC+TGG - chr5_3:63458575-63458594 Msa0824310:intron 40.0%
!!! GTGCTTTTTTACCTCACACT+TGG + chr5_3:63458672-63458691 None:intergenic 40.0%
CACACAATTTCTGACCAGTT+GGG + chr5_3:63458694-63458713 None:intergenic 40.0%
! CCTGATTGTCGTGCTTTATT+TGG + chr5_3:63458739-63458758 None:intergenic 40.0%
CCAAATAAAGCACGACAATC+AGG - chr5_3:63458736-63458755 Msa0824310:intron 40.0%
!! TGGATGCTGATTCAGAGAAA+GGG - chr5_3:63458819-63458838 Msa0824310:CDS 40.0%
CACTACAATGCGGTTATCTT+TGG - chr5_3:63458927-63458946 Msa0824310:intron 40.0%
! TTGCCGTTAGCTTATGTACT+TGG - chr5_3:63458977-63458996 Msa0824310:intron 40.0%
! TGCCGTTAGCTTATGTACTT+GGG - chr5_3:63458978-63458997 Msa0824310:intron 40.0%
AATCCACAAAACTGCACACA+AGG + chr5_3:63459011-63459030 None:intergenic 40.0%
AGGATAAGGCCATTACAATG+AGG - chr5_3:63459100-63459119 Msa0824310:intron 40.0%
ATCCAGCTTCCTCATTGTAA+TGG + chr5_3:63459112-63459131 None:intergenic 40.0%
TAAACAGAAGGTAGTAGACC+AGG - chr5_3:63459152-63459171 Msa0824310:intron 40.0%
TCACATGTACAGTGACAAGT+TGG - chr5_3:63459182-63459201 Msa0824310:intron 40.0%
AAATTTGCACCCATCCATTC+AGG - chr5_3:63459627-63459646 Msa0824310:CDS 40.0%
! TGGGTTGCAGACGATTTTCA+TGG - chr5_3:63452757-63452776 Msa0824310:CDS 45.0%
! GTTGCAGACGATTTTCATGG+AGG - chr5_3:63452760-63452779 Msa0824310:CDS 45.0%
TCTAACTGGTATGAAACCCG+AGG - chr5_3:63452802-63452821 Msa0824310:CDS 45.0%
TTCGACAACAACGATACCTC+GGG + chr5_3:63452821-63452840 None:intergenic 45.0%
GAGCAACATGTGCAAGGATA+AGG - chr5_3:63452970-63452989 Msa0824310:CDS 45.0%
!! TATCAACGAGAGTGCCTGTT+TGG + chr5_3:63453232-63453251 None:intergenic 45.0%
ATGATTGACTGACGGAGTGA+CGG + chr5_3:63453269-63453288 None:intergenic 45.0%
TGGGTTTAAGCCTTCACAGA+AGG - chr5_3:63453449-63453468 Msa0824310:intron 45.0%
!!! TCAGTTTTAGGGGACAAGTC+CGG - chr5_3:63454552-63454571 Msa0824310:CDS 45.0%
TTTCATGCTACTAAGGCGGA+TGG - chr5_3:63455448-63455467 Msa0824310:CDS 45.0%
CAGCATCAATGCTTTGCATG+TGG - chr5_3:63455657-63455676 Msa0824310:intron 45.0%
TTGTTGAATGGGAAGTGGGT+TGG + chr5_3:63456042-63456061 None:intergenic 45.0%
!! CGAGTTTGTTGAATGGGAAG+TGG + chr5_3:63456047-63456066 None:intergenic 45.0%
TGGGATTCCCCTTCTCATTT+GGG + chr5_3:63456085-63456104 None:intergenic 45.0%
ATGGGATTCCCCTTCTCATT+TGG + chr5_3:63456086-63456105 None:intergenic 45.0%
CATGTAGCAGTTAGCAGAAG+GGG - chr5_3:63456201-63456220 Msa0824310:intron 45.0%
ATGTAGCAGTTAGCAGAAGG+GGG - chr5_3:63456202-63456221 Msa0824310:intron 45.0%
CAGAAGGGGGGTAGAAAATT+GGG - chr5_3:63456215-63456234 Msa0824310:intron 45.0%
AGAAGGGGGGTAGAAAATTG+GGG - chr5_3:63456216-63456235 Msa0824310:intron 45.0%
CAAGCACAATCAGGTTAACG+AGG + chr5_3:63456451-63456470 None:intergenic 45.0%
! ACATCACAGGAGTGCATTGT+AGG + chr5_3:63456514-63456533 None:intergenic 45.0%
TGGATGATAGAAACGGTCAC+AGG + chr5_3:63456723-63456742 None:intergenic 45.0%
ACTAATGGGGCAATGCAATG+TGG + chr5_3:63456743-63456762 None:intergenic 45.0%
CATGAGATCAGTGATGAGCT+TGG - chr5_3:63457201-63457220 Msa0824310:intron 45.0%
GATGAAGCCTACAACTACAG+AGG - chr5_3:63457299-63457318 Msa0824310:intron 45.0%
TGAAGCCTACAACTACAGAG+GGG - chr5_3:63457301-63457320 Msa0824310:intron 45.0%
TTAACCCCCTCTGTAGTTGT+AGG + chr5_3:63457309-63457328 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_3:63457375-63457394 Msa0824310:intron 45.0%
ATTGGCAGCAAAAAGTCCTC+TGG - chr5_3:63457417-63457436 Msa0824310:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_3:63457448-63457467 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_3:63457375-63457394 Msa0824310:intron 45.0%
! CAGCAAAAAGTCCTCTGAAG+AGG - chr5_3:63457659-63457678 Msa0824310:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_3:63457448-63457467 None:intergenic 45.0%
TCAACGCTCTCTGTAGTTGT+AGG + chr5_3:63457783-63457802 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_3:63457375-63457394 Msa0824310:intron 45.0%
! CTTATCACTGGCCTCTTCAA+AGG + chr5_3:63457910-63457929 None:intergenic 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_3:63457448-63457467 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_3:63457375-63457394 Msa0824310:intron 45.0%
! CAGCAAAAAGTCCTCTGAAG+AGG - chr5_3:63457659-63457678 Msa0824310:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_3:63457448-63457467 None:intergenic 45.0%
!! GAACAGTAGCTCTAGTGTTG+GGG + chr5_3:63458202-63458221 None:intergenic 45.0%
!! GGAACAGTAGCTCTAGTGTT+GGG + chr5_3:63458203-63458222 None:intergenic 45.0%
CAACACTAGAGCTACTGTTC+CGG - chr5_3:63458202-63458221 Msa0824310:intron 45.0%
TTCAAGGACACCGGAATCAA+AGG - chr5_3:63458409-63458428 Msa0824310:intron 45.0%
TTTACCTCACACTTGGCCAT+TGG + chr5_3:63458665-63458684 None:intergenic 45.0%
!! GAGGTAAAAAAGCACCCAAC+TGG - chr5_3:63458677-63458696 Msa0824310:intron 45.0%
GCACACAATTTCTGACCAGT+TGG + chr5_3:63458695-63458714 None:intergenic 45.0%
AGGTCGACGATGCAGATAAT+CGG - chr5_3:63458756-63458775 Msa0824310:intron 45.0%
TCTAACAGGCATGATCGACA+GGG + chr5_3:63458783-63458802 None:intergenic 45.0%
TTCTAACAGGCATGATCGAC+AGG + chr5_3:63458784-63458803 None:intergenic 45.0%
GGAGGCAATACACTTCTAAC+AGG + chr5_3:63458797-63458816 None:intergenic 45.0%
! TAGAAGTGTATTGCCTCCAC+TGG - chr5_3:63458799-63458818 Msa0824310:CDS 45.0%
TTCTCTGAATCAGCATCCAG+TGG + chr5_3:63458818-63458837 None:intergenic 45.0%
!! CTGGATGCTGATTCAGAGAA+AGG - chr5_3:63458818-63458837 Msa0824310:CDS 45.0%
! GTTCCTTGTGTGCAGTTTTG+TGG - chr5_3:63459005-63459024 Msa0824310:intron 45.0%
CACACCCTCCAACAATATTG+AGG + chr5_3:63459052-63459071 None:intergenic 45.0%
GTTGGGAGATGTTGAGGATA+AGG - chr5_3:63459086-63459105 Msa0824310:intron 45.0%
TCACATGTACGGTGACAAGT+TGG - chr5_3:63459287-63459306 Msa0824310:intron 45.0%
AAAACGAGCTGGATGCTTGT+TGG + chr5_3:63459565-63459584 None:intergenic 45.0%
!! TGAAATATTAAAAAAAAATT+AGG + chr5_3:63455371-63455390 None:intergenic 5.0%
GGATCAAGCTTCAGAAACCG+AGG - chr5_3:63452852-63452871 Msa0824310:CDS 50.0%
! GTATTTGGGGCCGTTTGGAT+TGG - chr5_3:63453042-63453061 Msa0824310:CDS 50.0%
!! ACGAGAGTGCCTGTTTGGAT+TGG + chr5_3:63453227-63453246 None:intergenic 50.0%
CCTTAAGTGGTGTTCGTGTG+CGG - chr5_3:63453713-63453732 Msa0824310:CDS 50.0%
!!! CAGTTTTAGGGGACAAGTCC+GGG - chr5_3:63454553-63454572 Msa0824310:CDS 50.0%
TGTGCATTGTGCGACAATGG+TGG - chr5_3:63454813-63454832 Msa0824310:CDS 50.0%
ATGCTACTAAGGCGGATGGT+AGG - chr5_3:63455452-63455471 Msa0824310:CDS 50.0%
TGCTACTAAGGCGGATGGTA+GGG - chr5_3:63455453-63455472 Msa0824310:CDS 50.0%
ATAAACCATCCAGTCCAGGG+AGG - chr5_3:63455958-63455977 Msa0824310:intron 50.0%
CTTCAATCACCTATCCTCCC+TGG + chr5_3:63455975-63455994 None:intergenic 50.0%
!! GTGGGTTGGCTAGATGATGA+GGG + chr5_3:63456028-63456047 None:intergenic 50.0%
!! AGTGGGTTGGCTAGATGATG+AGG + chr5_3:63456029-63456048 None:intergenic 50.0%
TTCTTTGTCCTTCTGGGCGT+TGG - chr5_3:63456140-63456159 Msa0824310:intron 50.0%
TGTAGCAGTTAGCAGAAGGG+GGG - chr5_3:63456203-63456222 Msa0824310:intron 50.0%
GCAGAAGGGGGGTAGAAAAT+TGG - chr5_3:63456214-63456233 Msa0824310:intron 50.0%
GAAGGGGGGTAGAAAATTGG+GGG - chr5_3:63456217-63456236 Msa0824310:intron 50.0%
AAGGGGGGTAGAAAATTGGG+GGG - chr5_3:63456218-63456237 Msa0824310:intron 50.0%
GAGGATACGAGTTGCCATGT+AGG - chr5_3:63456246-63456265 Msa0824310:intron 50.0%
TTGCTGTGTCTGTGAAGGCT+TGG - chr5_3:63456832-63456851 Msa0824310:CDS 50.0%
ATTGCAACAAGGGCTTGGGA+AGG - chr5_3:63457053-63457072 Msa0824310:intron 50.0%
GAAGCCTACAACTACAGAGG+GGG - chr5_3:63457302-63457321 Msa0824310:intron 50.0%
!! TCTGACAAGAGCACTGCAGA+AGG - chr5_3:63457360-63457379 Msa0824310:intron 50.0%
! CTTATCACTGGTCTCTCCAG+AGG + chr5_3:63457436-63457455 None:intergenic 50.0%
!! TCTGGCAAGAGCATTGCAGA+AGG - chr5_3:63457597-63457616 Msa0824310:intron 50.0%
! CTTATCACTGGCCTCTTCAG+AGG + chr5_3:63457673-63457692 None:intergenic 50.0%
GAACAGTGTCTCTAGTGTCG+GGG + chr5_3:63457728-63457747 None:intergenic 50.0%
GGAACAGTGTCTCTAGTGTC+GGG + chr5_3:63457729-63457748 None:intergenic 50.0%
CGGAACAGTGTCTCTAGTGT+CGG + chr5_3:63457730-63457749 None:intergenic 50.0%
CGACACTAGAGACACTGTTC+CGG - chr5_3:63457728-63457747 Msa0824310:intron 50.0%
!! TCTGGCAAGAGCATTGCAGA+AGG - chr5_3:63457597-63457616 Msa0824310:intron 50.0%
! CTTATCACTGGCCTCTTCAG+AGG + chr5_3:63457673-63457692 None:intergenic 50.0%
!! CGGAACAGTAGCTCTAGTGT+TGG + chr5_3:63458204-63458223 None:intergenic 50.0%
TCTGAATCAGCATCCAGTGG+AGG + chr5_3:63458815-63458834 None:intergenic 50.0%
! GCACAAGTTGGGAGATGTTG+AGG - chr5_3:63459080-63459099 Msa0824310:intron 50.0%
GGCCATTACAATGAGGAAGC+TGG - chr5_3:63459107-63459126 Msa0824310:intron 50.0%
AAGGTAGTAGACCAGGAGCA+TGG - chr5_3:63459159-63459178 Msa0824310:intron 50.0%
TGTACATGTGACCATGCTCC+TGG + chr5_3:63459173-63459192 None:intergenic 50.0%
AAAGTCATAGCCCAGGAGCA+TGG - chr5_3:63459264-63459283 Msa0824310:intron 50.0%
GTACATGTGACCATGCTCCT+GGG + chr5_3:63459172-63459191 None:intergenic 50.0%
! CAGGAGCATGGTCACATGTA+CGG - chr5_3:63459171-63459190 Msa0824310:intron 50.0%
! ACATGATGGTAACGCTGACC+AGG - chr5_3:63459419-63459438 Msa0824310:CDS 50.0%
CCTGTTTGTCTTGAGTCTCC+TGG + chr5_3:63459440-63459459 None:intergenic 50.0%
CCAGGAGACTCAAGACAAAC+AGG - chr5_3:63459437-63459456 Msa0824310:CDS 50.0%
TTTGCACCCATCCATTCAGG+TGG - chr5_3:63459630-63459649 Msa0824310:CDS 50.0%
AGCCAACCACCTGAATGGAT+GGG + chr5_3:63459639-63459658 None:intergenic 50.0%
CCGCACACGAACACCACTTA+AGG + chr5_3:63453716-63453735 None:intergenic 55.0%
! GGTGTGATGGAGCATGCATG+AGG - chr5_3:63455422-63455441 Msa0824310:CDS 55.0%
ATGCTTTGCATGTGGCGAGC+TGG - chr5_3:63455665-63455684 Msa0824310:intron 55.0%
TGCTTTGCATGTGGCGAGCT+GGG - chr5_3:63455666-63455685 Msa0824310:intron 55.0%
ATCACCTATCCTCCCTGGAC+TGG + chr5_3:63455970-63455989 None:intergenic 55.0%
GGGGTAGAAAATTGGGGGGA+GGG - chr5_3:63456222-63456241 Msa0824310:intron 55.0%
AGAAAATTGGGGGGAGGGAG+AGG - chr5_3:63456227-63456246 Msa0824310:intron 55.0%
!! GAACAGTGGCTCTAGTGTCG+GGG + chr5_3:63457491-63457510 None:intergenic 55.0%
!! GGAACAGTGGCTCTAGTGTC+GGG + chr5_3:63457492-63457511 None:intergenic 55.0%
!! CGGAACAGTGGCTCTAGTGT+CGG + chr5_3:63457493-63457512 None:intergenic 55.0%
CGACACTAGAGCCACTGTTC+CGG - chr5_3:63457491-63457510 Msa0824310:CDS 55.0%
!! GAACAGTGGCTCTAGTGTCG+GGG + chr5_3:63457491-63457510 None:intergenic 55.0%
!! GGAACAGTGGCTCTAGTGTC+GGG + chr5_3:63457492-63457511 None:intergenic 55.0%
!! CGGAACAGTGGCTCTAGTGT+CGG + chr5_3:63457493-63457512 None:intergenic 55.0%
CGACACTAGAGCCACTGTTC+CGG - chr5_3:63457491-63457510 Msa0824310:CDS 55.0%
!! TCTGGCAAGAGCACTGCAGA+AGG - chr5_3:63458071-63458090 Msa0824310:intron 55.0%
CAAGCCAATGGCCAAGTGTG+AGG - chr5_3:63458658-63458677 Msa0824310:intron 55.0%
CGTACATGTGACCATGCTCC+TGG + chr5_3:63459278-63459297 None:intergenic 55.0%
CGAGTAGCTGCAAAACGAGC+TGG + chr5_3:63459576-63459595 None:intergenic 55.0%
CACCCATCCATTCAGGTGGT+TGG - chr5_3:63459634-63459653 Msa0824310:CDS 55.0%
GAGCCAACCACCTGAATGGA+TGG + chr5_3:63459640-63459659 None:intergenic 55.0%
CTTCGAGCCAACCACCTGAA+TGG + chr5_3:63459644-63459663 None:intergenic 55.0%
! CCTATCCTCCCTGGACTGGA+TGG + chr5_3:63455966-63455985 None:intergenic 60.0%
CCATCCAGTCCAGGGAGGAT+AGG - chr5_3:63455963-63455982 Msa0824310:intron 60.0%
!! GTCCTTCTGGGCGTTGGTTG+AGG - chr5_3:63456146-63456165 Msa0824310:intron 60.0%
AGCCTCAACCAACGCCCAGA+AGG + chr5_3:63456151-63456170 None:intergenic 60.0%
GGGGGTAGAAAATTGGGGGG+AGG - chr5_3:63456221-63456240 Msa0824310:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 63452548 63459782 63452548 ID=Msa0824310;Name=Msa0824310
chr5_3 mRNA 63452548 63459782 63452548 ID=Msa0824310-mRNA-1;Parent=Msa0824310;Name=Msa0824310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.88|0.8|1|0.88|0.8|10|114|1168
chr5_3 exon 63452548 63453310 63452548 ID=Msa0824310-mRNA-1:exon:19799;Parent=Msa0824310-mRNA-1
chr5_3 exon 63453490 63455133 63453490 ID=Msa0824310-mRNA-1:exon:19798;Parent=Msa0824310-mRNA-1
chr5_3 exon 63455219 63455305 63455219 ID=Msa0824310-mRNA-1:exon:19797;Parent=Msa0824310-mRNA-1
chr5_3 exon 63455397 63455632 63455397 ID=Msa0824310-mRNA-1:exon:19796;Parent=Msa0824310-mRNA-1
chr5_3 exon 63456614 63456712 63456614 ID=Msa0824310-mRNA-1:exon:19795;Parent=Msa0824310-mRNA-1
chr5_3 exon 63456811 63456907 63456811 ID=Msa0824310-mRNA-1:exon:19794;Parent=Msa0824310-mRNA-1
chr5_3 exon 63457483 63457595 63457483 ID=Msa0824310-mRNA-1:exon:19793;Parent=Msa0824310-mRNA-1
chr5_3 exon 63457734 63457787 63457734 ID=Msa0824310-mRNA-1:exon:19792;Parent=Msa0824310-mRNA-1
chr5_3 exon 63458791 63458887 63458791 ID=Msa0824310-mRNA-1:exon:19791;Parent=Msa0824310-mRNA-1
chr5_3 exon 63459352 63459782 63459352 ID=Msa0824310-mRNA-1:exon:19790;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63459352 63459782 63459352 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63458791 63458887 63458791 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63457734 63457787 63457734 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63457483 63457595 63457483 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63456811 63456907 63456811 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63456614 63456712 63456614 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63455397 63455632 63455397 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63455219 63455305 63455219 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63453490 63455133 63453490 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 CDS 63452662 63453310 63452662 ID=Msa0824310-mRNA-1:cds;Parent=Msa0824310-mRNA-1
chr5_3 three_prime_UTR 63452548 63452661 63452548 ID=Msa0824310-mRNA-1:three_prime_utr;Parent=Msa0824310-mRNA-1
Gene Sequence

>Msa0824310

ATGAAAAGGAAATCCACGACATTAAGGGATGAAACTGAAGCTGAAATCGAGTTTCAGTCTCTGTATGTAACGAATTATCATCTCGAAGACAACGATGGCGAACCTGTGTGTTTTTCTGTTTTACCGTTTAAATGGAGCGCTTCTAAGGTTTCCAAAGTTGATGATAGCGAAAAGGGGTTGAAGATATTTTTGCATGGATCTGCTGATAATGGGTTGCAGACGATTTTCATGGAGGTTATTGCATGGAAGTTTGATCTAACTGGTATGAAACCCGAGGTATCGTTGTTGTCGAAAGATAAAAGGTGGATCAAGCTTCAGAAACCGAGGAAAAGCTTTCAGAAAACTGTGAAAACTGCTTTGATTACGCTCTATTTTCTTCGCTGTGCTAAGAAAAATCCTCGATTATCTGTTGAGTCTTTTTGGAGCAACATCTCTTATGGGTTTAAGCCTTCACAGAAGGATTTATTGGATCATATGTCTCTGATTGGTGAAGCTACTACAAGAGATATTGGCTTAGCTAATTCTAAGCTTTTGCTCTCAGTTTTAGGGGACAAGTCCGGGTATCAGAAACCATCTGATGAGGAATTTGATACTAACAATGATATCATAGAAGAATCTGATGAAGACTCAAAAGTAGAGGATGATTTGTTTGATTCTTTTTGTGCATTGTGCGACAATGGTGGTAATCTCATTATGTGTGATGGAGCATGCATGAGGTCATTTCATGCTACTAAGGCGGATGGTAGGGAATCTTTATGTGATTCTCTTGGTTTTACCAAGAAGGAAGTTGATGATATTGAGACGTTTTATTGTAAGAATTGTGAATATCGTCAGCATCAATGCTTTGCATGTGGCGAGCTGGGTTCTTCTGATAAAGATAAAGATGCTGAGGTCTTTAAATGTGCTTCTGAAACCTGTGACCGTTTCTATCATCCACATTGCATTGCCCCATTAGTTAAGCATGTTTCCGAGGATCTTGAGAAAAATAATGCTGATGGGCAGACATTTACTTGTCCAATTCATTTTTGCTGTGTCTGTGAAGGCTTGGAAAATAAGATGGACCCTGAGTTGCAATTTGCAGTTTGTAACCGTTGTCCAAAGTCATATCATCGCAAATGTTTGCCTACAGAGATTGCTTTTGATGACATTGATGATATTGCAACAAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGTATCCTTATATATTGCTTAAATCATGAGATCAGTGATGAGCTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGATATAGTGTTCGGGACATCAATACTCCTAATAAGAAGATGAAGCCTACAACTACAGAGGGGGTTAAATTGAAGAGCAATGTTGACTTTGTTAAATCATCTGACAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGGAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCCACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGGGTCCTACAACTACAGAGAGCGTTGTATTGAAGAACAATGTTGGCTCTGTTAAATCATCTGGCAAGAGCATTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGAAGAGGCCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGACACTGTTCCGGAAATCAATACTTCTAATAAGAGGAAGAGGCCTACAACTACAGAGAGCGTTGAATTGAAGAACAACGTTGGCTCTGTTAAATCATCTGGCAAGAGCATTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGCAAAATTGGCAGCAAAAAGTCCTTTGAAGAGGCCAGTGATAAGCTTGAGACTCCTGTAAGAGTTCATATAAAATTCCCCGACACTAGAGCCACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGAGGCCTACAACTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTCTGTTAAATCATCTGGCAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGAAGAGGCCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCAACACTAGAGCTACTGTTCCGGAAATCAATACTTCTAATAAGAAGATGATGCCTACATCTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTTTGTTAAATCATCTGGCAAGAGCACTGCACATAGATCTAATGTGACCGGAAAACTGCCTTCTAAAACTGGTAGCAAAAAGTCTACTGAAAAGATCGAATCTGGTTCAGATATTTCAAGGACACCGGAATCAAAGGAAATGTCAAGTAAGTGTGTGACGGAATACAAGTCAACCTCAAAGAATTCGTCTGAAAAGGCGATTTCTTGTTCAGATATTTCAAGGAACCCGGAATCAAATCAAATAAGTTTGACTGAAGAAAACAAGAAGTCAAATTCAAATTTGTCTGGGAAAGTGATTTCTGGTTCACATATATCAAGTAAACCAAAATCAAATGAAAGATCTGAAACGGTTTTGACTAAAAACAAGCCAATGGCCAAGTGTGAGGTAAAAAAGCACCCAACTGGTCAGAAATTGTGTGCTTCTATGAATAAAGGTTCTGACCAAATAAAGCACGACAATCAGGTCGACGATGCAGATAATCGGACCCTGTCGATCATGCCTGTTAGAAGTGTATTGCCTCCACTGGATGCTGATTCAGAGAAAGGTTTTGTGGATTCGTTGAAAGATGCTAGATCCTCAATATTGTTGGAGGGTGTGATAAAAAAGCACAAGTTGGGAGATGTTGAGGATAAGGCCATTACAATGAGGAAGCTGGATGACTCAGTTGACTTGACTACTAAACAGAAGGTAGTAGACCAGGAGCATGGTCACATGTACAGTGACAAGTTGGCTGCTAAAAATATTACGGAGAGTAAGCTGGATGACTCAGTTGACTTGACTACTAAACAAAAAGTCATAGCCCAGGAGCATGGTCACATGTACGGTGACAAGTTGGCTGCTGAAAATATTATGGATGGTGATTCTGGGGACAAGCTCATGCCGAATCATGATCTCTTAAAGTCAACTGATCTAGCACCTGTAAATGAAAGTAAGAAAAAAAGCTCACATGATGGTAACGCTGACCAGGAGACTCAAGACAAACAGGAATTTAAGACAAGCAAGTCTTCGAAGACATCTGCGAAGAAAAAACGAATTGATAAAAATGATAGAAAGGCAATTGAAAAGCATGGTCGCGATTCTTCTCATGCCAACAAGCATCCAGCTCGTTTTGCAGCTACTCGTAAATCAAAATTTGGAACTAGTCTCAATGTAAAATTTGCACCCATCCATTCAGGTGGTTGGCTCGAAGAGTAG

Protein sequence

>Msa0824310

MKRKSTTLRDETEAEIEFQSLYVTNYHLEDNDGEPVCFSVLPFKWSASKVSKVDDSEKGLKIFLHGSADNGLQTIFMEVIAWKFDLTGMKPEVSLLSKDKRWIKLQKPRKSFQKTVKTALITLYFLRCAKKNPRLSVESFWSNISYGFKPSQKDLLDHMSLIGEATTRDIGLANSKLLLSVLGDKSGYQKPSDEEFDTNNDIIEESDEDSKVEDDLFDSFCALCDNGGNLIMCDGACMRSFHATKADGRESLCDSLGFTKKEVDDIETFYCKNCEYRQHQCFACGELGSSDKDKDAEVFKCASETCDRFYHPHCIAPLVKHVSEDLEKNNADGQTFTCPIHFCCVCEGLENKMDPELQFAVCNRCPKSYHRKCLPTEIAFDDIDDIATRAWEGLLPNNRILIYCLNHEISDELGTPVRDHIKFPDTRYSVRDINTPNKKMKPTTTEGVKLKSNVDFVKSSDKSTAEGSKVTGKLPSSKIGSKKSSGETSDKLETPVRDHIKFPDTRATVPEINTSNKRMGPTTTESVVLKNNVGSVKSSGKSIAEGSKVTGKLPSSKIGSKKSSEEASDKLETPVRDHIKFPDTRDTVPEINTSNKRKRPTTTESVELKNNVGSVKSSGKSIAEGSKVTGKLPSSKIGSKKSFEEASDKLETPVRVHIKFPDTRATVPEINTSNKRMRPTTTERVELKNNVGSVKSSGKSTAEGSKVTGKLPSSKIGSKKSSEEASDKLETPVRDHIKFPNTRATVPEINTSNKKMMPTSTERVELKNNVGFVKSSGKSTAHRSNVTGKLPSKTGSKKSTEKIESGSDISRTPESKEMSSKCVTEYKSTSKNSSEKAISCSDISRNPESNQISLTEENKKSNSNLSGKVISGSHISSKPKSNERSETVLTKNKPMAKCEVKKHPTGQKLCASMNKGSDQIKHDNQVDDADNRTLSIMPVRSVLPPLDADSEKGFVDSLKDARSSILLEGVIKKHKLGDVEDKAITMRKLDDSVDLTTKQKVVDQEHGHMYSDKLAAKNITESKLDDSVDLTTKQKVIAQEHGHMYGDKLAAENIMDGDSGDKLMPNHDLLKSTDLAPVNESKKKSSHDGNADQETQDKQEFKTSKSSKTSAKKKRIDKNDRKAIEKHGRDSSHANKHPARFAATRKSKFGTSLNVKFAPIHSGGWLEE*