AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961420 MtrunA17_Chr6g0480551 98.986 592 2 1 1 592 1 588 0.0 1205
Msa0961420 MtrunA17_Chr8g0375501 87.910 579 69 1 15 592 13 591 0.0 1048
Msa0961420 MtrunA17_Chr5g0434001 77.739 575 126 1 20 592 33 607 0.0 946
Msa0961420 MtrunA17_Chr4g0026371 47.909 574 293 3 21 592 20 589 0.0 564
Msa0961420 MtrunA17_Chr8g0380651 39.410 576 333 6 25 592 22 589 8.26e-145 431
Msa0961420 MtrunA17_Chr2g0277491 40.522 575 326 7 25 592 18 583 3.74e-144 429
Msa0961420 MtrunA17_Chr8g0342031 33.386 632 358 9 12 592 29 648 4.80e-125 382
Msa0961420 MtrunA17_Chr1g0150181 32.248 614 361 9 28 592 30 637 1.32e-110 344
Msa0961420 MtrunA17_Chr3g0136881 32.237 608 357 8 34 592 35 636 9.16e-110 342
Msa0961420 MtrunA17_Chr4g0065301 27.969 640 375 17 27 592 29 656 2.67e-81 268
Msa0961420 MtrunA17_Chr5g0448371 26.941 631 382 16 32 592 44 665 2.41e-74 250
Msa0961420 MtrunA17_Chr3g0120461 26.689 607 369 13 55 592 60 659 3.58e-74 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961420 AT2G01970.1 88.307 573 66 1 21 592 20 592 0.0 1038
Msa0961420 AT1G14670.1 87.916 571 68 1 23 592 22 592 0.0 1005
Msa0961420 AT5G37310.1 83.624 574 93 1 20 592 20 593 0.0 978
Msa0961420 AT5G37310.2 83.624 574 93 1 20 592 20 593 0.0 978
Msa0961420 AT1G08350.3 50.613 571 276 4 25 592 22 589 0.0 615
Msa0961420 AT1G08350.2 50.613 571 276 4 25 592 22 589 0.0 615
Msa0961420 AT1G08350.1 48.924 511 255 4 85 592 1 508 0.0 531
Msa0961420 AT1G08350.4 48.362 519 253 4 25 540 22 528 0.0 528
Msa0961420 AT1G10950.1 39.373 574 334 6 25 592 24 589 1.33e-141 423
Msa0961420 AT1G55130.1 32.543 633 364 9 15 592 13 637 6.50e-119 366
Msa0961420 AT3G13772.1 31.922 614 359 8 30 592 36 641 1.06e-118 366
Msa0961420 AT2G24170.1 32.248 645 376 8 1 592 1 637 4.14e-116 359
Msa0961420 AT5G10840.1 31.707 615 364 8 28 592 40 648 6.33e-110 343
Msa0961420 AT5G25100.1 31.280 617 366 7 28 592 34 644 1.60e-109 342
Msa0961420 AT5G25100.2 31.639 610 359 7 35 592 48 651 7.01e-109 341
Msa0961420 AT5G35160.2 27.129 634 382 16 31 592 33 658 1.90e-71 242
Msa0961420 AT5G35160.3 27.129 634 382 16 31 592 33 658 1.90e-71 242
Msa0961420 AT5G35160.4 27.129 634 382 16 31 592 33 658 1.90e-71 242
Msa0961420 AT5G35160.1 27.136 597 357 14 67 592 41 630 1.26e-66 229
Msa0961420 AT4G12650.1 29.237 472 308 10 136 592 192 652 1.04e-62 219
Msa0961420 AT2G24170.2 27.938 451 265 7 1 398 1 444 5.82e-58 201

Find 173 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTCTGTGTACTATATA+AGG 0.184785 6_3:+83091754 Msa0961420:three_prime_UTR
ATTATGATGATTTGCCTATT+TGG 0.197680 6_3:+83088962 Msa0961420:CDS
ATTATATATTTGCCAGTGTC+TGG 0.215685 6_3:+83090326 Msa0961420:CDS
TTATGATGATTTGCCTATTT+GGG 0.236802 6_3:+83088963 Msa0961420:CDS
ACAGAGAGTCCTTGTCCTTT+TGG 0.251570 6_3:-83088858 None:intergenic
GGTTCATTTGAACGCAATTC+TGG 0.272718 6_3:+83091903 Msa0961420:three_prime_UTR
TCTTATTGTCTTCATTTCAT+AGG 0.299928 6_3:+83091703 Msa0961420:three_prime_UTR
TTGCCTATTTGGGGTTTCAT+AGG 0.302131 6_3:+83088973 Msa0961420:CDS
GTTATATATGCACTCACTTC+AGG 0.319264 6_3:+83089817 Msa0961420:CDS
ACGTCTCCTCTACTTGTATT+AGG 0.320263 6_3:+83090145 Msa0961420:CDS
TTCTTGATGCTTGGAACTGT+TGG 0.329989 6_3:+83091609 Msa0961420:CDS
TCCTCCTTTGCCATGGTATC+GGG 0.338701 6_3:+83090240 Msa0961420:CDS
CACCGCTTCAATCTTATGTT+TGG 0.339673 6_3:-83087025 None:intergenic
CTTGTATTAGGAGGGATTGC+TGG 0.341246 6_3:+83090157 Msa0961420:CDS
TTCCTATGCGGTGGTTCAAC+TGG 0.342782 6_3:+83091474 Msa0961420:CDS
CTATATAAGGGAAGCTGGGC+TGG 0.345419 6_3:+83091767 Msa0961420:three_prime_UTR
TACGGTGTTCATATTCATAT+TGG 0.349084 6_3:+83089738 Msa0961420:CDS
TGTTATAAAATATATCAAAA+TGG 0.350719 6_3:-83089056 None:intergenic
AACCAACCTGGTATACAAAA+TGG 0.355606 6_3:-83087784 None:intergenic
ACTTGACAAAATCATTCTTA+AGG 0.370613 6_3:-83089338 None:intergenic
GTAACATCCACAAGGGCATT+TGG 0.374033 6_3:-83089114 None:intergenic
GGAGATGAAGAGAGAAGAAA+TGG 0.385785 6_3:-83087281 None:intergenic
AAATGCCTACTCGCACTTGA+TGG 0.387744 6_3:-83091673 None:intergenic
AAGAAGGCGAGGATGAATAA+TGG 0.388893 6_3:-83087256 None:intergenic
TTGTCGTTATAGTTCTCATA+TGG 0.395244 6_3:+83090113 Msa0961420:CDS
TTTCATAGGGAAGGTTGATA+AGG 0.398059 6_3:+83088987 Msa0961420:CDS
ATATTCATATTGGCACTTGT+TGG 0.402301 6_3:+83089748 Msa0961420:CDS
TCTGTATTTGCAGCCGCTCT+TGG 0.402906 6_3:+83089572 Msa0961420:CDS
GAAAGAGAAGAAAGAAGCAT+TGG 0.407672 6_3:+83088783 Msa0961420:CDS
TGAGGAGACTGCAGAGGATC+AGG 0.408156 6_3:+83089493 Msa0961420:CDS
TTCCCTATGAAACCCCAAAT+AGG 0.409018 6_3:-83088976 None:intergenic
ACCAGTGGATTTCCAAATGA+TGG 0.412001 6_3:-83089245 None:intergenic
TTTGCAGCCGCTCTTGGATC+TGG 0.413202 6_3:+83089578 Msa0961420:CDS
GCACTCACTTCAGGAATTGC+TGG 0.413621 6_3:+83089826 Msa0961420:CDS
GTCAACTGGAAGGAACAAAC+TGG 0.416389 6_3:+83089872 Msa0961420:CDS
TTTGGTTTCTTCTTGATGCT+TGG 0.416603 6_3:+83091600 Msa0961420:CDS
GTCCTCGCTACCCCATCATT+TGG 0.419122 6_3:+83089233 Msa0961420:CDS
CAGTTCTGTGTACTATATAA+GGG 0.420594 6_3:+83091755 Msa0961420:three_prime_UTR
TACATGGCCTGCATATGCTT+TGG 0.422165 6_3:+83091582 Msa0961420:CDS
TTATATATTTGCCAGTGTCT+GGG 0.430768 6_3:+83090327 Msa0961420:CDS
TTCCTCCTTTGCCATGGTAT+CGG 0.435261 6_3:+83090239 Msa0961420:CDS
GCTACTGCCGCTCTCCCTTT+CGG 0.438285 6_3:+83090085 Msa0961420:CDS
TATTACCAACCAATCTTCAA+TGG 0.438341 6_3:+83087222 Msa0961420:exon
TCATCTTCGCCATTGAAGAT+TGG 0.438390 6_3:-83087231 None:intergenic
GGATATTTAGTTGTGCGGAC+TGG 0.447634 6_3:-83090208 None:intergenic
GAGAGAAGAAATGGAGAAGA+AGG 0.451582 6_3:-83087272 None:intergenic
GTGTACTATATAAGGGAAGC+TGG 0.456262 6_3:+83091762 Msa0961420:three_prime_UTR
GTCACAGTCCTCCTCTTGAC+TGG 0.456631 6_3:+83089288 Msa0961420:CDS
GAAATAGAGGCCCACAGAAA+AGG 0.459642 6_3:-83090021 None:intergenic
AAGCAAAATGTAAGAAATAG+AGG 0.470399 6_3:-83090034 None:intergenic
CCCATCATTTGGAAATCCAC+TGG 0.476786 6_3:+83089244 Msa0961420:CDS
ATAGTAGTAATACAGACAAT+AGG 0.479087 6_3:-83091511 None:intergenic
TATATAAGGGAAGCTGGGCT+GGG 0.479350 6_3:+83091768 Msa0961420:three_prime_UTR
TGCAAATACAGATTTGAACT+TGG 0.479752 6_3:-83089561 None:intergenic
TATGCCCGCTCCGATATGTC+TGG 0.480652 6_3:+83091531 Msa0961420:CDS
CATTGGGTGAAGTGTTGAAT+GGG 0.484672 6_3:+83088800 Msa0961420:CDS
TGTGATCTAACAAGTTGCTC+TGG 0.487264 6_3:-83091805 None:intergenic
ATAGGGAAGGTTGATAAGGA+AGG 0.491104 6_3:+83088991 Msa0961420:CDS
TACCTCATTCTATTGTCAAC+TGG 0.491307 6_3:+83089858 Msa0961420:CDS
GCAACTTGTTAGATCACAAA+AGG 0.491632 6_3:+83091810 Msa0961420:three_prime_UTR
AATAGAGCCCCTCGGTTGTA+CGG 0.492094 6_3:-83089781 None:intergenic
TTGCATGAAACCAGACATAT+CGG 0.492755 6_3:-83091541 None:intergenic
AAAGAGAAGAAAGAAGCATT+GGG 0.492920 6_3:+83088784 Msa0961420:CDS
TCAGATAAACGTTACAAAGA+AGG 0.494228 6_3:+83087322 Msa0961420:CDS
AACTCACAGGGTAAACAGTT+GGG 0.494448 6_3:-83089603 None:intergenic
CCCTTGGATATTTAGTTGTG+CGG 0.499239 6_3:-83090213 None:intergenic
GGCAAAGGAGGAATTTCCCT+TGG 0.499258 6_3:-83090229 None:intergenic
TAAGGGAAGCTGGGCTGGGT+GGG 0.501140 6_3:+83091772 Msa0961420:three_prime_UTR
AAGTACCTTGGATTATGAAA+AGG 0.506207 6_3:-83087379 None:intergenic
AATTCTGTGGCCCCAGACAC+TGG 0.506214 6_3:-83090338 None:intergenic
TATTTGGGGTTTCATAGGGA+AGG 0.508176 6_3:+83088978 Msa0961420:CDS
TTGTATTAGGAGGGATTGCT+GGG 0.509020 6_3:+83090158 Msa0961420:CDS
CTTCGCCATTGAAGATTGGT+TGG 0.509181 6_3:-83087227 None:intergenic
AGGATCAGGAAGAGACTGGC+TGG 0.510925 6_3:+83089507 Msa0961420:CDS
TGCCTATTTGGGGTTTCATA+GGG 0.512616 6_3:+83088974 Msa0961420:CDS
CCTCTCTTCGCTAACAAAGT+TGG 0.516706 6_3:+83087355 Msa0961420:CDS
CCAGTGGATTTCCAAATGAT+GGG 0.517728 6_3:-83089244 None:intergenic
CAAAATGGATGTGCTTGTAA+AGG 0.520184 6_3:-83089041 None:intergenic
GCAAATACAGATTTGAACTT+GGG 0.523489 6_3:-83089560 None:intergenic
TTATCAGCTTGAGTTCCAAA+AGG 0.526656 6_3:+83088843 Msa0961420:CDS
GACACTTACAAAAGAAGAAG+TGG 0.527829 6_3:+83088894 Msa0961420:CDS
CATGATCTTCAGCAGCAAGC+TGG 0.529624 6_3:-83090444 None:intergenic
AAACTCACAGGGTAAACAGT+TGG 0.533116 6_3:-83089604 None:intergenic
AGTGTTGAATGGGGATAGGT+TGG 0.533187 6_3:+83088810 Msa0961420:CDS
TATGATGATTTGCCTATTTG+GGG 0.533815 6_3:+83088964 Msa0961420:CDS
TCTCCTCTACTTGTATTAGG+AGG 0.536344 6_3:+83090148 Msa0961420:CDS
GCATTGGGTGAAGTGTTGAA+TGG 0.536950 6_3:+83088799 Msa0961420:CDS
TTTCTATACTGTGAAATGGA+AGG 0.537931 6_3:+83089164 Msa0961420:CDS
CTAACACTCCCTTCGAGAAG+AGG 0.538348 6_3:+83089190 Msa0961420:CDS
ATTCCTCAGATGGCAATGGC+AGG 0.540197 6_3:+83090268 Msa0961420:CDS
GTTCGGAATCTACTATTGAC+TGG 0.541752 6_3:+83089995 Msa0961420:CDS
TAACGACAATTGTGCCGAAA+GGG 0.542695 6_3:-83090099 None:intergenic
CAAGTTATGTCGAAACAACT+CGG 0.543003 6_3:+83091935 Msa0961420:three_prime_UTR
CTCCTCTACTTGTATTAGGA+GGG 0.543133 6_3:+83090149 Msa0961420:CDS
GTGAAGTGTTGAATGGGGAT+AGG 0.548060 6_3:+83088806 Msa0961420:CDS
TAGTTGTGCGGACTGGAGCT+TGG 0.548078 6_3:-83090201 None:intergenic
AAATGATGGGGTAGCGAGGA+CGG 0.550197 6_3:-83089231 None:intergenic
GCAGAGGATCAGGAAGAGAC+TGG 0.553267 6_3:+83089503 Msa0961420:CDS
ATAAGGGAAGCTGGGCTGGG+TGG 0.553558 6_3:+83091771 Msa0961420:three_prime_UTR
AGGTAGTATCTATAATCACT+AGG 0.554450 6_3:-83089021 None:intergenic
ATCCCTCCTAATACAAGTAG+AGG 0.556607 6_3:-83090151 None:intergenic
TATATATTTGCCAGTGTCTG+GGG 0.557505 6_3:+83090328 Msa0961420:CDS
AAGAAATGGAGAAGAAGGCG+AGG 0.559753 6_3:-83087267 None:intergenic
GAAGAAACCAAAGCATATGC+AGG 0.562481 6_3:-83091589 None:intergenic
CCCCGATACCATGGCAAAGG+AGG 0.562801 6_3:-83090241 None:intergenic
GAAACCAGACATATCGGAGC+GGG 0.562807 6_3:-83091535 None:intergenic
GGTAGTATCTATAATCACTA+GGG 0.562961 6_3:-83089020 None:intergenic
TAGGGAAGGTTGATAAGGAA+GGG 0.564428 6_3:+83088992 Msa0961420:CDS
CTGAAGATCATGAATGGTGG+TGG 0.564533 6_3:+83090455 Msa0961420:CDS
TACAGATCATTCCTATGCGG+TGG 0.566423 6_3:+83091465 Msa0961420:intron
ATCTGATGAATCAGATCTGA+CGG 0.568724 6_3:-83087305 None:intergenic
CACTCCCTTCGAGAAGAGGA+TGG 0.569074 6_3:+83089194 Msa0961420:CDS
GGGAAATTCCTCCTTTGCCA+TGG 0.569283 6_3:+83090233 Msa0961420:CDS
TGTTACTGCTTTCATTACTG+TGG 0.578518 6_3:+83090408 Msa0961420:CDS
AACGGATCCAAATGCCCTTG+TGG 0.580190 6_3:+83089107 Msa0961420:CDS
TGTACTATATAAGGGAAGCT+GGG 0.580425 6_3:+83091763 Msa0961420:three_prime_UTR
TCGGGGAGCAATTCCTCAGA+TGG 0.580703 6_3:+83090258 Msa0961420:CDS
TTGCTGCTGAAGATCATGAA+TGG 0.582525 6_3:+83090449 Msa0961420:CDS
TTCCAGTTGACAATAGAATG+AGG 0.583452 6_3:-83089860 None:intergenic
TCCGCACAACTAAATATCCA+AGG 0.584996 6_3:+83090212 Msa0961420:CDS
AATCCTGCCATTGCCATCTG+AGG 0.585284 6_3:-83090271 None:intergenic
CCTACTCGCACTTGATGGAT+CGG 0.585534 6_3:-83091668 None:intergenic
CCAACTTTGTTAGCGAAGAG+AGG 0.587195 6_3:-83087355 None:intergenic
TTGTCCATCCTCTTCTCGAA+GGG 0.596146 6_3:-83089198 None:intergenic
CTTGTCCATCCTCTTCTCGA+AGG 0.597996 6_3:-83089199 None:intergenic
TTGATGTGAAAGTGAAGAGA+GGG 0.606884 6_3:-83087164 None:intergenic
GGAGTGTGTTGATAATAAAG+AGG 0.610696 6_3:-83087094 None:intergenic
TTGCAAGAAAACCAGTCAAG+AGG 0.612188 6_3:-83089299 None:intergenic
CCTCCTTTGCCATGGTATCG+GGG 0.612898 6_3:+83090241 Msa0961420:CDS
ATATAAGAAGATGAAGAATG+TGG 0.616732 6_3:-83087115 None:intergenic
GCTCCCCGATACCATGGCAA+AGG 0.619903 6_3:-83090244 None:intergenic
TTCCAAATGATGGGGTAGCG+AGG 0.620376 6_3:-83089235 None:intergenic
ATAACGACAATTGTGCCGAA+AGG 0.620454 6_3:-83090100 None:intergenic
TCGATGTAAATAGCACTGAA+AGG 0.620759 6_3:-83090298 None:intergenic
AAACAGGTATGCACATGATG+AGG 0.621763 6_3:+83089475 Msa0961420:intron
CCGATCCATCAAGTGCGAGT+AGG 0.623339 6_3:+83091668 Msa0961420:CDS
AAAGGACAAGGACTCTCTGT+CGG 0.625130 6_3:+83088861 Msa0961420:CDS
GGAATTGCTCCCCGATACCA+TGG 0.625145 6_3:-83090250 None:intergenic
AATTGATAATCGAAAACCAG+TGG 0.626537 6_3:-83089260 None:intergenic
TCATTCTATTGTCAACTGGA+AGG 0.630520 6_3:+83089862 Msa0961420:CDS
ACTTGATGGATCGGTATATG+TGG 0.631167 6_3:-83091659 None:intergenic
CAAGAAAACCAGTCAAGAGG+AGG 0.631428 6_3:-83089296 None:intergenic
AGCAATTCCTCAGATGGCAA+TGG 0.634595 6_3:+83090264 Msa0961420:CDS
AAGATCATGAATGGTGGTGG+AGG 0.635786 6_3:+83090458 Msa0961420:CDS
TATTGAGATCAATGTGCGAA+CGG 0.636703 6_3:+83089089 Msa0961420:CDS
CACCAAACATAAGATTGAAG+CGG 0.637337 6_3:+83087023 Msa0961420:five_prime_UTR
ATCCAGTTGAACCACCGCAT+AGG 0.639943 6_3:-83091476 None:intergenic
GTGCAGTGAATAGAGCCCCT+CGG 0.643541 6_3:-83089789 None:intergenic
GAGTGTGTTGATAATAAAGA+GGG 0.645942 6_3:-83087093 None:intergenic
AATTGTGCCGAAAGGGAGAG+CGG 0.647097 6_3:-83090092 None:intergenic
TGCCCTTGTGGATGTTACAG+AGG 0.650587 6_3:+83089119 Msa0961420:CDS
CCGCACAACTAAATATCCAA+GGG 0.653670 6_3:+83090213 Msa0961420:CDS
CTGCTGAAGATCATGAATGG+TGG 0.659388 6_3:+83090452 Msa0961420:CDS
CAGTGGATTTCCAAATGATG+GGG 0.661541 6_3:-83089243 None:intergenic
TGATGGATCGGTATATGTGG+CGG 0.664035 6_3:-83091656 None:intergenic
TGAAACCAGACATATCGGAG+CGG 0.664795 6_3:-83091536 None:intergenic
GCTTGAGTTCCAAAAGGACA+AGG 0.665429 6_3:+83088849 Msa0961420:CDS
TGTCCTCTGTAACATCCACA+AGG 0.669975 6_3:-83089122 None:intergenic
GTTGATGTGAAAGTGAAGAG+AGG 0.674158 6_3:-83087165 None:intergenic
GGACAAAGAACAATGCTGCA+CGG 0.675721 6_3:-83091635 None:intergenic
ATTGGGTGAAGTGTTGAATG+GGG 0.679717 6_3:+83088801 Msa0961420:CDS
TCAACTGGAAGGAACAAACT+GGG 0.689021 6_3:+83089873 Msa0961420:CDS
CCTTACAGATCATTCCTATG+CGG 0.691017 6_3:+83091462 Msa0961420:intron
TGTAGATTGTGTAAATTCTG+TGG 0.694009 6_3:-83090351 None:intergenic
ATAGTAGTCCTTACGAACAG+CGG 0.696646 6_3:-83088929 None:intergenic
ACATGATGAGGAGACTGCAG+AGG 0.702295 6_3:+83089487 Msa0961420:CDS
TGATGTGAAAGTGAAGAGAG+GGG 0.702419 6_3:-83087163 None:intergenic
GATGTGAAAGTGAAGAGAGG+GGG 0.706350 6_3:-83087162 None:intergenic
TGATGAATCAGATCTGACGG+TGG 0.706629 6_3:-83087302 None:intergenic
GATTGCTGGGAAGAACAGCA+AGG 0.708765 6_3:+83090171 Msa0961420:CDS
ACTGGCTGGAAATACATCCA+CGG 0.709634 6_3:+83089521 Msa0961420:CDS
GTCCTCTGTAACATCCACAA+GGG 0.709898 6_3:-83089121 None:intergenic
TTGGGTACCAGATCCAAGAG+CGG 0.740493 6_3:-83089585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTAATTTTTAAATCA+TGG + chr6_3:83087848-83087867 Msa0961420:intron 10.0%
!!! ATGTTTTAATTTTTAAATTG+TGG + chr6_3:83087978-83087997 Msa0961420:intron 10.0%
!! TGTTATAAAATATATCAAAA+TGG - chr6_3:83089059-83089078 None:intergenic 10.0%
!!! TTTTGATATATTTTATAACA+AGG + chr6_3:83089059-83089078 Msa0961420:CDS 10.0%
!!! ATTTTAACAAAATAATAAAC+TGG - chr6_3:83090811-83090830 None:intergenic 10.0%
!!! ATTCTGTTACATTTTTTAAT+TGG + chr6_3:83087494-83087513 Msa0961420:intron 15.0%
!!! TTCTGTTACATTTTTTAATT+GGG + chr6_3:83087495-83087514 Msa0961420:intron 15.0%
!!! TTTTCTTATCATTAATATCA+AGG - chr6_3:83088195-83088214 None:intergenic 15.0%
!! TAAAATGATAAGAAAATCAA+AGG + chr6_3:83088232-83088251 Msa0961420:intron 15.0%
!!! ATGCAAATGTTTTAAAATAT+CGG + chr6_3:83088271-83088290 Msa0961420:intron 15.0%
!! AATAGCTAAATAAAAAAACA+TGG + chr6_3:83088554-83088573 Msa0961420:intron 15.0%
!! TAAGTAGTAAATATGAATTA+TGG + chr6_3:83090646-83090665 Msa0961420:intron 15.0%
!! AAGAGTTTAGTTAAAAAATA+TGG - chr6_3:83091865-83091884 None:intergenic 15.0%
!!! CTTGAAATACTTTTTTTTTT+TGG + chr6_3:83091882-83091901 Msa0961420:three_prime_UTR 15.0%
!! TAATTCAATTCTCTTATTAG+TGG + chr6_3:83087811-83087830 Msa0961420:intron 20.0%
!!! TTTTTAAATCATGGTTATTC+AGG + chr6_3:83087857-83087876 Msa0961420:intron 20.0%
!!! TTTTAAATCATGGTTATTCA+GGG + chr6_3:83087858-83087877 Msa0961420:intron 20.0%
!!! TTATTCAGGGTTTTAAATTA+TGG + chr6_3:83087871-83087890 Msa0961420:intron 20.0%
!!! GTTTTAAATTATGGTTATGT+TGG + chr6_3:83087880-83087899 Msa0961420:intron 20.0%
!!! TGGTTAATATCATTTTATTG+CGG + chr6_3:83087900-83087919 Msa0961420:intron 20.0%
!!! TTTTAAATTGTGGTTATTCA+AGG + chr6_3:83087988-83088007 Msa0961420:intron 20.0%
!!! AAGGTTTTGATTTTAAATCA+TGG + chr6_3:83088007-83088026 Msa0961420:intron 20.0%
!!! AGGTTTTGATTTTAAATCAT+GGG + chr6_3:83088008-83088027 Msa0961420:intron 20.0%
!! TCAATTCTTAAATCATGTAA+CGG - chr6_3:83088336-83088355 None:intergenic 20.0%
!!! ATTTTGAGATATTTTCTTGT+TGG + chr6_3:83088722-83088741 Msa0961420:intron 20.0%
!!! TTTTGAGATATTTTCTTGTT+GGG + chr6_3:83088723-83088742 Msa0961420:intron 20.0%
!! CTTTAATTGAACATATTGAA+TGG - chr6_3:83089637-83089656 None:intergenic 20.0%
!!! ACATATAAATCTATGCATTT+TGG + chr6_3:83089901-83089920 Msa0961420:intron 20.0%
!! AAACAATAAACCATAGAAAT+TGG - chr6_3:83090521-83090540 None:intergenic 20.0%
!!! TTTTGAAGTGAATTATTTGA+TGG + chr6_3:83090868-83090887 Msa0961420:intron 20.0%
!! ATAGTGAAAACAATTCTTAT+TGG + chr6_3:83090934-83090953 Msa0961420:intron 20.0%
!!! ATGTTTTTACAAAGTAAACA+TGG + chr6_3:83091068-83091087 Msa0961420:intron 20.0%
!!! AAATAACTTGTGAAAACATT+AGG - chr6_3:83091094-83091113 None:intergenic 20.0%
! TAATAAAGAGGGAAAAAAGA+AGG - chr6_3:83087085-83087104 None:intergenic 25.0%
! ATATAAGAAGATGAAGAATG+TGG - chr6_3:83087118-83087137 None:intergenic 25.0%
!! TAATTTTCAGTGAGACTTAT+CGG + chr6_3:83087749-83087768 Msa0961420:intron 25.0%
! TTGAATTAAAAAAACCAACC+TGG - chr6_3:83087799-83087818 None:intergenic 25.0%
!! GGTTAATATCATTTTATTGC+GGG + chr6_3:83087901-83087920 Msa0961420:intron 25.0%
!!! AAGGTTTTTCAATGTTTTAG+TGG - chr6_3:83088126-83088145 None:intergenic 25.0%
!!! ATGTTTTAAAATATCGGATC+TGG + chr6_3:83088277-83088296 Msa0961420:intron 25.0%
! AACTCATGATGTTAAAACAT+GGG + chr6_3:83088389-83088408 Msa0961420:intron 25.0%
! TTATTTAGCTATTAGCATAG+TGG - chr6_3:83088547-83088566 None:intergenic 25.0%
! AATAAAAAAACATGGACCAT+TGG + chr6_3:83088562-83088581 Msa0961420:intron 25.0%
!! GATGACTCAATATTTAACTT+TGG + chr6_3:83088673-83088692 Msa0961420:intron 25.0%
!! TCAATATTTAACTTTGGAAG+AGG + chr6_3:83088679-83088698 Msa0961420:intron 25.0%
!!! TTTGAGATATTTTCTTGTTG+GGG + chr6_3:83088724-83088743 Msa0961420:intron 25.0%
!! ATTATGATGATTTGCCTATT+TGG + chr6_3:83088962-83088981 Msa0961420:CDS 25.0%
!! TTATGATGATTTGCCTATTT+GGG + chr6_3:83088963-83088982 Msa0961420:CDS 25.0%
!! AGTTTTTCTATACTGTGAAA+TGG + chr6_3:83089160-83089179 Msa0961420:CDS 25.0%
! ACTTGACAAAATCATTCTTA+AGG - chr6_3:83089341-83089360 None:intergenic 25.0%
! AAAAAAAACACAGAGAGAAA+AGG - chr6_3:83089370-83089389 None:intergenic 25.0%
!!! TTTTCTCTCTGTGTTTTTTT+TGG + chr6_3:83089369-83089388 Msa0961420:intron 25.0%
! AGCAAAAGAATAAATTACAG+AGG - chr6_3:83089424-83089443 None:intergenic 25.0%
! AATTAAAGAAAACCCATTTC+AGG + chr6_3:83089649-83089668 Msa0961420:intron 25.0%
!! CAATTTCATTTTCCTGAAAT+GGG - chr6_3:83089664-83089683 None:intergenic 25.0%
!! ACAATTTCATTTTCCTGAAA+TGG - chr6_3:83089665-83089684 None:intergenic 25.0%
! AAGCAAAATGTAAGAAATAG+AGG - chr6_3:83090037-83090056 None:intergenic 25.0%
! TACTAGTAATACCTAACTAA+GGG - chr6_3:83090550-83090569 None:intergenic 25.0%
! AATATGAAATTCTTGCTTGA+GGG + chr6_3:83090895-83090914 Msa0961420:intron 25.0%
!! CACAAGTTATTTCAAACTTA+AGG + chr6_3:83091102-83091121 Msa0961420:intron 25.0%
! ATTAGTAATCTTTACTGTGT+TGG + chr6_3:83091130-83091149 Msa0961420:intron 25.0%
! CCAGATATAGAAAACATAAA+TGG - chr6_3:83091232-83091251 None:intergenic 25.0%
!! CCATTTATGTTTTCTATATC+TGG + chr6_3:83091229-83091248 Msa0961420:intron 25.0%
!! TGTTTTCTATATCTGGATTT+TGG + chr6_3:83091236-83091255 Msa0961420:intron 25.0%
! ATAGTAGTAATACAGACAAT+AGG - chr6_3:83091514-83091533 None:intergenic 25.0%
! TCTTATTGTCTTCATTTCAT+AGG + chr6_3:83091703-83091722 Msa0961420:three_prime_UTR 25.0%
!!! ATCACAAAAGGAACTTTTTT+TGG + chr6_3:83091822-83091841 Msa0961420:three_prime_UTR 25.0%
!! GAGTGTGTTGATAATAAAGA+GGG - chr6_3:83087096-83087115 None:intergenic 30.0%
TATTACCAACCAATCTTCAA+TGG + chr6_3:83087222-83087241 Msa0961420:exon 30.0%
TCAGATAAACGTTACAAAGA+AGG + chr6_3:83087322-83087341 Msa0961420:CDS 30.0%
AAGTACCTTGGATTATGAAA+AGG - chr6_3:83087382-83087401 None:intergenic 30.0%
!! ATGTTGCTATTGTTTTGTTG+CGG + chr6_3:83088032-83088051 Msa0961420:intron 30.0%
AGATCAATTGTGGTTAATGA+TGG + chr6_3:83088159-83088178 Msa0961420:intron 30.0%
! TTGAATCCATTTTGTGAAGT+TGG - chr6_3:83088371-83088390 None:intergenic 30.0%
CAACTCATGATGTTAAAACA+TGG + chr6_3:83088388-83088407 Msa0961420:intron 30.0%
!! ATTTGAGAATGAGTATTGAG+TGG + chr6_3:83088521-83088540 Msa0961420:intron 30.0%
TGGTAATTTGGCAAGTAAAT+TGG - chr6_3:83088627-83088646 None:intergenic 30.0%
GAAAATCAGTTGTGGTAATT+TGG - chr6_3:83088639-83088658 None:intergenic 30.0%
ACTGATAAGAAAATCAGTTG+TGG - chr6_3:83088647-83088666 None:intergenic 30.0%
!! AAAGAGAAGAAAGAAGCATT+GGG + chr6_3:83088784-83088803 Msa0961420:CDS 30.0%
! TATGATGATTTGCCTATTTG+GGG + chr6_3:83088964-83088983 Msa0961420:CDS 30.0%
GGTAGTATCTATAATCACTA+GGG - chr6_3:83089023-83089042 None:intergenic 30.0%
AGGTAGTATCTATAATCACT+AGG - chr6_3:83089024-83089043 None:intergenic 30.0%
TTTCTATACTGTGAAATGGA+AGG + chr6_3:83089164-83089183 Msa0961420:CDS 30.0%
! AATTGATAATCGAAAACCAG+TGG - chr6_3:83089263-83089282 None:intergenic 30.0%
GCAAATACAGATTTGAACTT+GGG - chr6_3:83089563-83089582 None:intergenic 30.0%
TGCAAATACAGATTTGAACT+TGG - chr6_3:83089564-83089583 None:intergenic 30.0%
! TTTATGCATTTTGTGCAGTA+CGG + chr6_3:83089720-83089739 Msa0961420:intron 30.0%
TACGGTGTTCATATTCATAT+TGG + chr6_3:83089738-83089757 Msa0961420:CDS 30.0%
ATATTCATATTGGCACTTGT+TGG + chr6_3:83089748-83089767 Msa0961420:CDS 30.0%
TTGTCGTTATAGTTCTCATA+TGG + chr6_3:83090113-83090132 Msa0961420:CDS 30.0%
ATTATATATTTGCCAGTGTC+TGG + chr6_3:83090326-83090345 Msa0961420:CDS 30.0%
TTATATATTTGCCAGTGTCT+GGG + chr6_3:83090327-83090346 Msa0961420:CDS 30.0%
TGTAGATTGTGTAAATTCTG+TGG - chr6_3:83090354-83090373 None:intergenic 30.0%
ACTAGTAATACCTAACTAAG+GGG - chr6_3:83090549-83090568 None:intergenic 30.0%
GTACTAGTAATACCTAACTA+AGG - chr6_3:83090551-83090570 None:intergenic 30.0%
TGGTTATATCATCAAAGAGA+TGG - chr6_3:83090604-83090623 None:intergenic 30.0%
!! TGGAAAGTGTTATATGAAAG+AGG - chr6_3:83090689-83090708 None:intergenic 30.0%
TCACAAAGTAATCACTAAAC+AGG - chr6_3:83090779-83090798 None:intergenic 30.0%
GAATATGAAATTCTTGCTTG+AGG + chr6_3:83090894-83090913 Msa0961420:intron 30.0%
CAAGGAAAAATTTGGATTCT+CGG + chr6_3:83091265-83091284 Msa0961420:intron 30.0%
AAGGAAAAATTTGGATTCTC+GGG + chr6_3:83091266-83091285 Msa0961420:intron 30.0%
CTTTCATAATGAATCACATG+AGG + chr6_3:83091358-83091377 Msa0961420:intron 30.0%
!! ATGCAAACCTCATTTTTCTT+TGG + chr6_3:83091558-83091577 Msa0961420:CDS 30.0%
CATGTATCCAAAGAAAAATG+AGG - chr6_3:83091568-83091587 None:intergenic 30.0%
!! CTCATTTTTCTTTGGATACA+TGG + chr6_3:83091566-83091585 Msa0961420:CDS 30.0%
CAGTTCTGTGTACTATATAA+GGG + chr6_3:83091755-83091774 Msa0961420:three_prime_UTR 30.0%
CACCAAACATAAGATTGAAG+CGG + chr6_3:83087023-83087042 Msa0961420:five_prime_UTR 35.0%
AAAGAGGGAAAAAAGAAGGA+AGG - chr6_3:83087081-83087100 None:intergenic 35.0%
!! GGAGTGTGTTGATAATAAAG+AGG - chr6_3:83087097-83087116 None:intergenic 35.0%
GGTTGAATAGAAAAAAGAGG+GGG - chr6_3:83087144-83087163 None:intergenic 35.0%
GGGTTGAATAGAAAAAAGAG+GGG - chr6_3:83087145-83087164 None:intergenic 35.0%
GGGGTTGAATAGAAAAAAGA+GGG - chr6_3:83087146-83087165 None:intergenic 35.0%
TTGATGTGAAAGTGAAGAGA+GGG - chr6_3:83087167-83087186 None:intergenic 35.0%
ATCTGATGAATCAGATCTGA+CGG - chr6_3:83087308-83087327 None:intergenic 35.0%
! TTGGTCCTTTTCATAATCCA+AGG + chr6_3:83087374-83087393 Msa0961420:CDS 35.0%
!! TAATATACAAAGCACCGACA+CGG + chr6_3:83087541-83087560 Msa0961420:intron 35.0%
TGTAATCAAATGTGTCGTGT+CGG + chr6_3:83087623-83087642 Msa0961420:intron 35.0%
AACCAACCTGGTATACAAAA+TGG - chr6_3:83087787-83087806 None:intergenic 35.0%
CGGGAAATTGCAGTTAAATA+TGG + chr6_3:83087920-83087939 Msa0961420:intron 35.0%
!! TGTTTTGTTGCGGAAAATTG+CGG + chr6_3:83088042-83088061 Msa0961420:intron 35.0%
CGGAAAATTGCGGTTAAATA+TGG + chr6_3:83088052-83088071 Msa0961420:intron 35.0%
! GCAGGATTTTACTAACCAAA+TGG - chr6_3:83088306-83088325 None:intergenic 35.0%
CGTATTCCAACTTCACAAAA+TGG + chr6_3:83088362-83088381 Msa0961420:intron 35.0%
! GGCTGTGATGATATTTTATG+TGG + chr6_3:83088447-83088466 Msa0961420:intron 35.0%
! GATATTTTATGTGGAATCCG+AGG + chr6_3:83088456-83088475 Msa0961420:intron 35.0%
AAATAAACACACGAAGTGAG+GGG - chr6_3:83088505-83088524 None:intergenic 35.0%
CAAATAAACACACGAAGTGA+GGG - chr6_3:83088506-83088525 None:intergenic 35.0%
TCAAATAAACACACGAAGTG+AGG - chr6_3:83088507-83088526 None:intergenic 35.0%
AAAAAACATGGACCATTGGA+TGG + chr6_3:83088566-83088585 Msa0961420:intron 35.0%
! GAAAGAGAAGAAAGAAGCAT+TGG + chr6_3:83088783-83088802 Msa0961420:CDS 35.0%
!!! TTTTGGAACTCAAGCTGATA+AGG - chr6_3:83088844-83088863 None:intergenic 35.0%
TTATCAGCTTGAGTTCCAAA+AGG + chr6_3:83088843-83088862 Msa0961420:CDS 35.0%
GACACTTACAAAAGAAGAAG+TGG + chr6_3:83088894-83088913 Msa0961420:CDS 35.0%
! AAGAAGAAGTGGCGAATTTT+CGG + chr6_3:83088905-83088924 Msa0961420:CDS 35.0%
!! TTTCATAGGGAAGGTTGATA+AGG + chr6_3:83088987-83089006 Msa0961420:CDS 35.0%
CAAAATGGATGTGCTTGTAA+AGG - chr6_3:83089044-83089063 None:intergenic 35.0%
TATTGAGATCAATGTGCGAA+CGG + chr6_3:83089089-83089108 Msa0961420:CDS 35.0%
! TCCTTGTTTGACTTCTAAAC+AGG + chr6_3:83089459-83089478 Msa0961420:intron 35.0%
ACCTGTTTAGAAGTCAAACA+AGG - chr6_3:83089463-83089482 None:intergenic 35.0%
! TATTTTATCCGTACAACCGA+GGG + chr6_3:83089773-83089792 Msa0961420:CDS 35.0%
GTTATATATGCACTCACTTC+AGG + chr6_3:83089817-83089836 Msa0961420:CDS 35.0%
TACCTCATTCTATTGTCAAC+TGG + chr6_3:83089858-83089877 Msa0961420:CDS 35.0%
TTCCAGTTGACAATAGAATG+AGG - chr6_3:83089863-83089882 None:intergenic 35.0%
TCATTCTATTGTCAACTGGA+AGG + chr6_3:83089862-83089881 Msa0961420:CDS 35.0%
CATGCAAATCTAACTGATAC+TGG - chr6_3:83089928-83089947 None:intergenic 35.0%
CTTTGTCCGTTTATAATGAC+AGG + chr6_3:83089973-83089992 Msa0961420:intron 35.0%
TCCGTTTATAATGACAGGTT+CGG + chr6_3:83089978-83089997 Msa0961420:intron 35.0%
TCCGAACCTGTCATTATAAA+CGG - chr6_3:83089982-83090001 None:intergenic 35.0%
! TCGATGTAAATAGCACTGAA+AGG - chr6_3:83090301-83090320 None:intergenic 35.0%
TATATATTTGCCAGTGTCTG+GGG + chr6_3:83090328-83090347 Msa0961420:CDS 35.0%
TGTTACTGCTTTCATTACTG+TGG + chr6_3:83090408-83090427 Msa0961420:CDS 35.0%
CTTTCTTGCACCAATTTCTA+TGG + chr6_3:83090508-83090527 Msa0961420:intron 35.0%
TGTTTATAGTCCCCTTAGTT+AGG + chr6_3:83090536-83090555 Msa0961420:intron 35.0%
GAAATCAGTTCACTGCTAAA+TGG - chr6_3:83090573-83090592 None:intergenic 35.0%
! TCATCAGAACTCATTTTCAG+TGG - chr6_3:83090709-83090728 None:intergenic 35.0%
ATGCATACAATTGTTCCTTC+AGG + chr6_3:83090978-83090997 Msa0961420:intron 35.0%
AGGAAACATTCTTGCTTTCA+TGG + chr6_3:83091204-83091223 Msa0961420:intron 35.0%
! CGAGAATCCAAATTTTTCCT+TGG - chr6_3:83091267-83091286 None:intergenic 35.0%
!! CAATTAAACTCAAAGCATCG+AGG - chr6_3:83091401-83091420 None:intergenic 35.0%
AGCACAAAGTTTAAATGTGC+AGG - chr6_3:83091435-83091454 None:intergenic 35.0%
TTGCATGAAACCAGACATAT+CGG - chr6_3:83091544-83091563 None:intergenic 35.0%
! TTTGGTTTCTTCTTGATGCT+TGG + chr6_3:83091600-83091619 Msa0961420:CDS 35.0%
GCAGTTCTGTGTACTATATA+AGG + chr6_3:83091754-83091773 Msa0961420:three_prime_UTR 35.0%
TGTACTATATAAGGGAAGCT+GGG + chr6_3:83091763-83091782 Msa0961420:three_prime_UTR 35.0%
!! GCAACTTGTTAGATCACAAA+AGG + chr6_3:83091810-83091829 Msa0961420:three_prime_UTR 35.0%
CAAGTTATGTCGAAACAACT+CGG + chr6_3:83091935-83091954 Msa0961420:three_prime_UTR 35.0%
CACCGCTTCAATCTTATGTT+TGG - chr6_3:83087028-83087047 None:intergenic 40.0%
GGGGGTTGAATAGAAAAAAG+AGG - chr6_3:83087147-83087166 None:intergenic 40.0%
TGATGTGAAAGTGAAGAGAG+GGG - chr6_3:83087166-83087185 None:intergenic 40.0%
GTTGATGTGAAAGTGAAGAG+AGG - chr6_3:83087168-83087187 None:intergenic 40.0%
TCATCTTCGCCATTGAAGAT+TGG - chr6_3:83087234-83087253 None:intergenic 40.0%
AAGAAGGCGAGGATGAATAA+TGG - chr6_3:83087259-83087278 None:intergenic 40.0%
GAGAGAAGAAATGGAGAAGA+AGG - chr6_3:83087275-83087294 None:intergenic 40.0%
GGAGATGAAGAGAGAAGAAA+TGG - chr6_3:83087284-83087303 None:intergenic 40.0%
!!! GATCTGCCATTTTGTATACC+AGG + chr6_3:83087778-83087797 Msa0961420:CDS 40.0%
!!! TGCCATTTTGTATACCAGGT+TGG + chr6_3:83087782-83087801 Msa0961420:intron 40.0%
TGCTGATGCAATTGTAGTTG+TGG + chr6_3:83088079-83088098 Msa0961420:intron 40.0%
TTGTAGTTGTGGAGACATCA+TGG + chr6_3:83088090-83088109 Msa0961420:intron 40.0%
TGATCTTGAACATCGCATCA+AGG - chr6_3:83088145-83088164 None:intergenic 40.0%
GCGATGTTCAAGATCAATTG+TGG + chr6_3:83088149-83088168 Msa0961420:intron 40.0%
TATCGGATCTGGATACCATT+TGG + chr6_3:83088288-83088307 Msa0961420:intron 40.0%
TCATGTAACGGTGTAAATGC+AGG - chr6_3:83088324-83088343 None:intergenic 40.0%
TGCATAACTAGACCATCCAA+TGG - chr6_3:83088581-83088600 None:intergenic 40.0%
!! CATTGGGTGAAGTGTTGAAT+GGG + chr6_3:83088800-83088819 Msa0961420:CDS 40.0%
!! ATTGGGTGAAGTGTTGAATG+GGG + chr6_3:83088801-83088820 Msa0961420:CDS 40.0%
ATAGTAGTCCTTACGAACAG+CGG - chr6_3:83088932-83088951 None:intergenic 40.0%
! TTGCCTATTTGGGGTTTCAT+AGG + chr6_3:83088973-83088992 Msa0961420:CDS 40.0%
! TGCCTATTTGGGGTTTCATA+GGG + chr6_3:83088974-83088993 Msa0961420:CDS 40.0%
TTCCCTATGAAACCCCAAAT+AGG - chr6_3:83088979-83088998 None:intergenic 40.0%
! TATTTGGGGTTTCATAGGGA+AGG + chr6_3:83088978-83088997 Msa0961420:CDS 40.0%
!! ATAGGGAAGGTTGATAAGGA+AGG + chr6_3:83088991-83089010 Msa0961420:CDS 40.0%
!! TAGGGAAGGTTGATAAGGAA+GGG + chr6_3:83088992-83089011 Msa0961420:CDS 40.0%
! CAGTGGATTTCCAAATGATG+GGG - chr6_3:83089246-83089265 None:intergenic 40.0%
! CCAGTGGATTTCCAAATGAT+GGG - chr6_3:83089247-83089266 None:intergenic 40.0%
! ACCAGTGGATTTCCAAATGA+TGG - chr6_3:83089248-83089267 None:intergenic 40.0%
TTGCAAGAAAACCAGTCAAG+AGG - chr6_3:83089302-83089321 None:intergenic 40.0%
AAACAGGTATGCACATGATG+AGG + chr6_3:83089475-83089494 Msa0961420:intron 40.0%
! ACATCCACGGTGATGTTTTT+AGG + chr6_3:83089534-83089553 Msa0961420:CDS 40.0%
GAAACCTAAAAACATCACCG+TGG - chr6_3:83089541-83089560 None:intergenic 40.0%
AACTCACAGGGTAAACAGTT+GGG - chr6_3:83089606-83089625 None:intergenic 40.0%
AAACTCACAGGGTAAACAGT+TGG - chr6_3:83089607-83089626 None:intergenic 40.0%
TTTACCCTGTGAGTTTCTTC+TGG + chr6_3:83089611-83089630 Msa0961420:intron 40.0%
! GTATTTTATCCGTACAACCG+AGG + chr6_3:83089772-83089791 Msa0961420:CDS 40.0%
! ATTTTATCCGTACAACCGAG+GGG + chr6_3:83089774-83089793 Msa0961420:CDS 40.0%
TCAACTGGAAGGAACAAACT+GGG + chr6_3:83089873-83089892 Msa0961420:CDS 40.0%
GTTCGGAATCTACTATTGAC+TGG + chr6_3:83089995-83090014 Msa0961420:CDS 40.0%
TAACGACAATTGTGCCGAAA+GGG - chr6_3:83090102-83090121 None:intergenic 40.0%
ATAACGACAATTGTGCCGAA+AGG - chr6_3:83090103-83090122 None:intergenic 40.0%
ACGTCTCCTCTACTTGTATT+AGG + chr6_3:83090145-83090164 Msa0961420:CDS 40.0%
TCTCCTCTACTTGTATTAGG+AGG + chr6_3:83090148-83090167 Msa0961420:CDS 40.0%
CTCCTCTACTTGTATTAGGA+GGG + chr6_3:83090149-83090168 Msa0961420:CDS 40.0%
ATCCCTCCTAATACAAGTAG+AGG - chr6_3:83090154-83090173 None:intergenic 40.0%
TTGTATTAGGAGGGATTGCT+GGG + chr6_3:83090158-83090177 Msa0961420:CDS 40.0%
TCCGCACAACTAAATATCCA+AGG + chr6_3:83090212-83090231 Msa0961420:CDS 40.0%
CCCTTGGATATTTAGTTGTG+CGG - chr6_3:83090216-83090235 None:intergenic 40.0%
CCGCACAACTAAATATCCAA+GGG + chr6_3:83090213-83090232 Msa0961420:CDS 40.0%
TTGCTGCTGAAGATCATGAA+TGG + chr6_3:83090449-83090468 Msa0961420:CDS 40.0%
CCAACATCGATCAACTACAT+TGG - chr6_3:83090624-83090643 None:intergenic 40.0%
CCAATGTAGTTGATCGATGT+TGG + chr6_3:83090621-83090640 Msa0961420:intron 40.0%
CGACTCTAACTCATGAACAA+AGG + chr6_3:83091184-83091203 Msa0961420:intron 40.0%
GGTGCAACCAAGGAAAAATT+TGG + chr6_3:83091257-83091276 Msa0961420:intron 40.0%
CCTTACAGATCATTCCTATG+CGG + chr6_3:83091462-83091481 Msa0961420:intron 40.0%
GAAGAAACCAAAGCATATGC+AGG - chr6_3:83091592-83091611 None:intergenic 40.0%
TTCTTGATGCTTGGAACTGT+TGG + chr6_3:83091609-83091628 Msa0961420:CDS 40.0%
! ACTTGATGGATCGGTATATG+TGG - chr6_3:83091662-83091681 None:intergenic 40.0%
GTGTACTATATAAGGGAAGC+TGG + chr6_3:83091762-83091781 Msa0961420:three_prime_UTR 40.0%
TGTGATCTAACAAGTTGCTC+TGG - chr6_3:83091808-83091827 None:intergenic 40.0%
GGTTCATTTGAACGCAATTC+TGG + chr6_3:83091903-83091922 Msa0961420:three_prime_UTR 40.0%
GATGTGAAAGTGAAGAGAGG+GGG - chr6_3:83087165-83087184 None:intergenic 45.0%
CTTCGCCATTGAAGATTGGT+TGG - chr6_3:83087230-83087249 None:intergenic 45.0%
AAGAAATGGAGAAGAAGGCG+AGG - chr6_3:83087270-83087289 None:intergenic 45.0%
TGATGAATCAGATCTGACGG+TGG - chr6_3:83087305-83087324 None:intergenic 45.0%
CCAACTTTGTTAGCGAAGAG+AGG - chr6_3:83087358-83087377 None:intergenic 45.0%
CCTCTCTTCGCTAACAAAGT+TGG + chr6_3:83087355-83087374 Msa0961420:CDS 45.0%
!! AACGGATCGAAGAAGTACCT+TGG - chr6_3:83087394-83087413 None:intergenic 45.0%
CAGATCCAGCACGTGAATAA+CGG - chr6_3:83087412-83087431 None:intergenic 45.0%
! CATCTGATCAAAGGCGTATC+CGG - chr6_3:83087658-83087677 None:intergenic 45.0%
ACGCCTTTGATCAGATGTGT+CGG + chr6_3:83087661-83087680 Msa0961420:intron 45.0%
ACACCGACACATCTGATCAA+AGG - chr6_3:83087667-83087686 None:intergenic 45.0%
ACTGTTGCATCCTCGTGATT+TGG + chr6_3:83088426-83088445 Msa0961420:intron 45.0%
ATCATCACAGCCAAATCACG+AGG - chr6_3:83088439-83088458 None:intergenic 45.0%
!! GCATTGGGTGAAGTGTTGAA+TGG + chr6_3:83088799-83088818 Msa0961420:CDS 45.0%
!! GTGAAGTGTTGAATGGGGAT+AGG + chr6_3:83088806-83088825 Msa0961420:CDS 45.0%
! AGTGTTGAATGGGGATAGGT+TGG + chr6_3:83088810-83088829 Msa0961420:CDS 45.0%
GCTTGAGTTCCAAAAGGACA+AGG + chr6_3:83088849-83088868 Msa0961420:CDS 45.0%
! ACAGAGAGTCCTTGTCCTTT+TGG - chr6_3:83088861-83088880 None:intergenic 45.0%
AAAGGACAAGGACTCTCTGT+CGG + chr6_3:83088861-83088880 Msa0961420:CDS 45.0%
!! GTAACATCCACAAGGGCATT+TGG - chr6_3:83089117-83089136 None:intergenic 45.0%
GTCCTCTGTAACATCCACAA+GGG - chr6_3:83089124-83089143 None:intergenic 45.0%
TGTCCTCTGTAACATCCACA+AGG - chr6_3:83089125-83089144 None:intergenic 45.0%
TTGTCCATCCTCTTCTCGAA+GGG - chr6_3:83089201-83089220 None:intergenic 45.0%
CCCATCATTTGGAAATCCAC+TGG + chr6_3:83089244-83089263 Msa0961420:CDS 45.0%
CAAGAAAACCAGTCAAGAGG+AGG - chr6_3:83089299-83089318 None:intergenic 45.0%
ACTGGCTGGAAATACATCCA+CGG + chr6_3:83089521-83089540 Msa0961420:CDS 45.0%
ATGGCCAGAAGAAACTCACA+GGG - chr6_3:83089618-83089637 None:intergenic 45.0%
AATGGCCAGAAGAAACTCAC+AGG - chr6_3:83089619-83089638 None:intergenic 45.0%
GTCAACTGGAAGGAACAAAC+TGG + chr6_3:83089872-83089891 Msa0961420:CDS 45.0%
! TTGACTGGATGCCTTTTCTG+TGG + chr6_3:83090010-83090029 Msa0961420:CDS 45.0%
! TGACTGGATGCCTTTTCTGT+GGG + chr6_3:83090011-83090030 Msa0961420:CDS 45.0%
GAAATAGAGGCCCACAGAAA+AGG - chr6_3:83090024-83090043 None:intergenic 45.0%
CTTGTATTAGGAGGGATTGC+TGG + chr6_3:83090157-83090176 Msa0961420:CDS 45.0%
GGATATTTAGTTGTGCGGAC+TGG - chr6_3:83090211-83090230 None:intergenic 45.0%
TTCCTCCTTTGCCATGGTAT+CGG + chr6_3:83090239-83090258 Msa0961420:CDS 45.0%
AGCAATTCCTCAGATGGCAA+TGG + chr6_3:83090264-83090283 Msa0961420:CDS 45.0%
CTGCTGAAGATCATGAATGG+TGG + chr6_3:83090452-83090471 Msa0961420:CDS 45.0%
CTGAAGATCATGAATGGTGG+TGG + chr6_3:83090455-83090474 Msa0961420:CDS 45.0%
!! AAGATCATGAATGGTGGTGG+AGG + chr6_3:83090458-83090477 Msa0961420:CDS 45.0%
GCTTGAGGGTGATGCATTTA+TGG + chr6_3:83090909-83090928 Msa0961420:intron 45.0%
AATAGACTCTCGAGTCCTGA+AGG - chr6_3:83090996-83091015 None:intergenic 45.0%
!! TCTGGATTTTGGTGCAACCA+AGG + chr6_3:83091247-83091266 Msa0961420:intron 45.0%
CCGCATAGGAATGATCTGTA+AGG - chr6_3:83091465-83091484 None:intergenic 45.0%
TACAGATCATTCCTATGCGG+TGG + chr6_3:83091465-83091484 Msa0961420:intron 45.0%
TGAAACCAGACATATCGGAG+CGG - chr6_3:83091539-83091558 None:intergenic 45.0%
TACATGGCCTGCATATGCTT+TGG + chr6_3:83091582-83091601 Msa0961420:CDS 45.0%
GGACAAAGAACAATGCTGCA+CGG - chr6_3:83091638-83091657 None:intergenic 45.0%
! TGATGGATCGGTATATGTGG+CGG - chr6_3:83091659-83091678 None:intergenic 45.0%
AAATGCCTACTCGCACTTGA+TGG - chr6_3:83091676-83091695 None:intergenic 45.0%
TATATAAGGGAAGCTGGGCT+GGG + chr6_3:83091768-83091787 Msa0961420:three_prime_UTR 45.0%
TCGATCCGTTATTCACGTGC+TGG + chr6_3:83087404-83087423 Msa0961420:intron 50.0%
! ATCAAAGGCGTATCCGGTGT+TGG - chr6_3:83087652-83087671 None:intergenic 50.0%
AGGATGCAACAGTGAGGACA+AGG - chr6_3:83088419-83088438 None:intergenic 50.0%
ATCACGAGGATGCAACAGTG+AGG - chr6_3:83088425-83088444 None:intergenic 50.0%
TGAGGGGAAATGTGGTGACT+CGG - chr6_3:83088489-83088508 None:intergenic 50.0%
ACACGAAGTGAGGGGAAATG+TGG - chr6_3:83088497-83088516 None:intergenic 50.0%
! TTTTCGGTCCGCTGTTCGTA+AGG + chr6_3:83088921-83088940 Msa0961420:CDS 50.0%
AACGGATCCAAATGCCCTTG+TGG + chr6_3:83089107-83089126 Msa0961420:CDS 50.0%
TGCCCTTGTGGATGTTACAG+AGG + chr6_3:83089119-83089138 Msa0961420:CDS 50.0%
CTAACACTCCCTTCGAGAAG+AGG + chr6_3:83089190-83089209 Msa0961420:CDS 50.0%
CTTGTCCATCCTCTTCTCGA+AGG - chr6_3:83089202-83089221 None:intergenic 50.0%
! AAATGATGGGGTAGCGAGGA+CGG - chr6_3:83089234-83089253 None:intergenic 50.0%
! TTCCAAATGATGGGGTAGCG+AGG - chr6_3:83089238-83089257 None:intergenic 50.0%
ACATGATGAGGAGACTGCAG+AGG + chr6_3:83089487-83089506 Msa0961420:CDS 50.0%
TCTGTATTTGCAGCCGCTCT+TGG + chr6_3:83089572-83089591 Msa0961420:CDS 50.0%
TTGGGTACCAGATCCAAGAG+CGG - chr6_3:83089588-83089607 None:intergenic 50.0%
AATAGAGCCCCTCGGTTGTA+CGG - chr6_3:83089784-83089803 None:intergenic 50.0%
GCACTCACTTCAGGAATTGC+TGG + chr6_3:83089826-83089845 Msa0961420:CDS 50.0%
AATTGTGCCGAAAGGGAGAG+CGG - chr6_3:83090095-83090114 None:intergenic 50.0%
GATTGCTGGGAAGAACAGCA+AGG + chr6_3:83090171-83090190 Msa0961420:CDS 50.0%
GGCAAAGGAGGAATTTCCCT+TGG - chr6_3:83090232-83090251 None:intergenic 50.0%
GGGAAATTCCTCCTTTGCCA+TGG + chr6_3:83090233-83090252 Msa0961420:CDS 50.0%
TCCTCCTTTGCCATGGTATC+GGG + chr6_3:83090240-83090259 Msa0961420:CDS 50.0%
ATTCCTCAGATGGCAATGGC+AGG + chr6_3:83090268-83090287 Msa0961420:CDS 50.0%
AATCCTGCCATTGCCATCTG+AGG - chr6_3:83090274-83090293 None:intergenic 50.0%
CATGATCTTCAGCAGCAAGC+TGG - chr6_3:83090447-83090466 None:intergenic 50.0%
TTCCTATGCGGTGGTTCAAC+TGG + chr6_3:83091474-83091493 Msa0961420:CDS 50.0%
ATCCAGTTGAACCACCGCAT+AGG - chr6_3:83091479-83091498 None:intergenic 50.0%
GAAACCAGACATATCGGAGC+GGG - chr6_3:83091538-83091557 None:intergenic 50.0%
! CCTACTCGCACTTGATGGAT+CGG - chr6_3:83091671-83091690 None:intergenic 50.0%
CTATATAAGGGAAGCTGGGC+TGG + chr6_3:83091767-83091786 Msa0961420:three_prime_UTR 50.0%
TCCAGTGTCTGTGTCCGTGT+CGG - chr6_3:83087558-83087577 None:intergenic 55.0%
! GGTGACTCGGGTTTGAACCT+CGG - chr6_3:83088476-83088495 None:intergenic 55.0%
GAGGGGAAATGTGGTGACTC+GGG - chr6_3:83088488-83088507 None:intergenic 55.0%
CACTCCCTTCGAGAAGAGGA+TGG + chr6_3:83089194-83089213 Msa0961420:CDS 55.0%
GTCCTCGCTACCCCATCATT+TGG + chr6_3:83089233-83089252 Msa0961420:CDS 55.0%
GTCACAGTCCTCCTCTTGAC+TGG + chr6_3:83089288-83089307 Msa0961420:CDS 55.0%
TGAGGAGACTGCAGAGGATC+AGG + chr6_3:83089493-83089512 Msa0961420:CDS 55.0%
GCAGAGGATCAGGAAGAGAC+TGG + chr6_3:83089503-83089522 Msa0961420:CDS 55.0%
AGGATCAGGAAGAGACTGGC+TGG + chr6_3:83089507-83089526 Msa0961420:CDS 55.0%
TTTGCAGCCGCTCTTGGATC+TGG + chr6_3:83089578-83089597 Msa0961420:CDS 55.0%
GTGCAGTGAATAGAGCCCCT+CGG - chr6_3:83089792-83089811 None:intergenic 55.0%
!! TAGTTGTGCGGACTGGAGCT+TGG - chr6_3:83090204-83090223 None:intergenic 55.0%
CCTCCTTTGCCATGGTATCG+GGG + chr6_3:83090241-83090260 Msa0961420:CDS 55.0%
GGAATTGCTCCCCGATACCA+TGG - chr6_3:83090253-83090272 None:intergenic 55.0%
TCGGGGAGCAATTCCTCAGA+TGG + chr6_3:83090258-83090277 Msa0961420:CDS 55.0%
AATTCTGTGGCCCCAGACAC+TGG - chr6_3:83090341-83090360 None:intergenic 55.0%
TATGCCCGCTCCGATATGTC+TGG + chr6_3:83091531-83091550 Msa0961420:CDS 55.0%
CCGATCCATCAAGTGCGAGT+AGG + chr6_3:83091668-83091687 Msa0961420:CDS 55.0%
ACCGACACGGACACAGACAC+TGG + chr6_3:83087554-83087573 Msa0961420:intron 60.0%
! GTCGTGTCGGTGTCCAACAC+CGG + chr6_3:83087636-83087655 Msa0961420:intron 60.0%
GCTACTGCCGCTCTCCCTTT+CGG + chr6_3:83090085-83090104 Msa0961420:CDS 60.0%
CCCCGATACCATGGCAAAGG+AGG - chr6_3:83090244-83090263 None:intergenic 60.0%
GCTCCCCGATACCATGGCAA+AGG - chr6_3:83090247-83090266 None:intergenic 60.0%
! ATAAGGGAAGCTGGGCTGGG+TGG + chr6_3:83091771-83091790 Msa0961420:three_prime_UTR 60.0%
! TAAGGGAAGCTGGGCTGGGT+GGG + chr6_3:83091772-83091791 Msa0961420:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 83087015 83091959 83087015 ID=Msa0961420;Name=Msa0961420
chr6_3 mRNA 83087015 83091959 83087015 ID=Msa0961420-mRNA-1;Parent=Msa0961420;Name=Msa0961420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=226|1|1|1|1|1|7|270|592
chr6_3 exon 83087015 83087395 83087015 ID=Msa0961420-mRNA-1:exon:14844;Parent=Msa0961420-mRNA-1
chr6_3 exon 83087759 83087799 83087759 ID=Msa0961420-mRNA-1:exon:14845;Parent=Msa0961420-mRNA-1
chr6_3 exon 83088776 83089358 83088776 ID=Msa0961420-mRNA-1:exon:14846;Parent=Msa0961420-mRNA-1
chr6_3 exon 83089481 83089618 83089481 ID=Msa0961420-mRNA-1:exon:14847;Parent=Msa0961420-mRNA-1
chr6_3 exon 83089738 83089894 83089738 ID=Msa0961420-mRNA-1:exon:14848;Parent=Msa0961420-mRNA-1
chr6_3 exon 83089995 83090479 83089995 ID=Msa0961420-mRNA-1:exon:14849;Parent=Msa0961420-mRNA-1
chr6_3 exon 83091470 83091959 83091470 ID=Msa0961420-mRNA-1:exon:14850;Parent=Msa0961420-mRNA-1
chr6_3 five_prime_UTR 83087015 83087240 83087015 ID=Msa0961420-mRNA-1:five_prime_utr;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83087241 83087395 83087241 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83087759 83087799 83087759 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83088776 83089358 83088776 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83089481 83089618 83089481 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83089738 83089894 83089738 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83089995 83090479 83089995 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 CDS 83091470 83091689 83091470 ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3 three_prime_UTR 83091690 83091959 83091690 ID=Msa0961420-mRNA-1:three_prime_utr;Parent=Msa0961420-mRNA-1
Gene Sequence

>Msa0961420

ATGGCGAAGATGAATCCATTATTCATCCTCGCCTTCTTCTCCATTTCTTCTCTCTTCATCTCCACCGTCAGATCTGATTCATCAGATAAACGTTACAAAGAAGGAGATCTTGTTCCTCTCTTCGCTAACAAAGTTGGTCCTTTTCATAATCCAAGTGAGACTTATCGGTATTTTGATCTGCCATTTTGTATACCAGATCATTTGAAAGAGAAGAAAGAAGCATTGGGTGAAGTGTTGAATGGGGATAGGTTGGTTAGTGCTCCTTATCAGCTTGAGTTCCAAAAGGACAAGGACTCTCTGTCGGTTTGCAAGAAGACACTTACAAAAGAAGAAGTGGCGAATTTTCGGTCCGCTGTTCGTAAGGACTACTATTTTCAGATGTATTATGATGATTTGCCTATTTGGGGTTTCATAGGGAAGGTTGATAAGGAAGGGAAAGACCCTAGTGATTATAGATACTACCTTTACAAGCACATCCATTTTGATATATTTTATAACAAGGATCGTGTTATTGAGATCAATGTGCGAACGGATCCAAATGCCCTTGTGGATGTTACAGAGGACAATGAAGTTGATGTAGAGTTTTTCTATACTGTGAAATGGAAGGAGACTAACACTCCCTTCGAGAAGAGGATGGACAAGTACTCTCAGCCGTCCTCGCTACCCCATCATTTGGAAATCCACTGGTTTTCGATTATCAATTCGTGCGTCACAGTCCTCCTCTTGACTGGTTTTCTTGCAACTATTTTGATGCGTGTCCTTAAGAATGATTTTGTCAAGTATGCACATGATGAGGAGACTGCAGAGGATCAGGAAGAGACTGGCTGGAAATACATCCACGGTGATGTTTTTAGGTTTCCCAAGTTCAAATCTGTATTTGCAGCCGCTCTTGGATCTGGTACCCAACTGTTTACCCTTACGGTGTTCATATTCATATTGGCACTTGTTGGTGTATTTTATCCGTACAACCGAGGGGCTCTATTCACTGCACTTGTTGTTATATATGCACTCACTTCAGGAATTGCTGGCTATACTGCTACCTCATTCTATTGTCAACTGGAAGGAACAAACTGGGTTCGGAATCTACTATTGACTGGATGCCTTTTCTGTGGGCCTCTATTTCTTACATTTTGCTTTCTGAACACTGTTGCAATTGTCTACAATGCTACTGCCGCTCTCCCTTTCGGCACAATTGTCGTTATAGTTCTCATATGGACACTTGTTACGTCTCCTCTACTTGTATTAGGAGGGATTGCTGGGAAGAACAGCAAGGCTGAATTCCAAGCTCCAGTCCGCACAACTAAATATCCAAGGGAAATTCCTCCTTTGCCATGGTATCGGGGAGCAATTCCTCAGATGGCAATGGCAGGATTTTTGCCTTTCAGTGCTATTTACATCGAACTTTATTATATATTTGCCAGTGTCTGGGGCCACAGAATTTACACAATCTACAGCATTCTGTTTATTGTCTTCATCATTCTCTTGATTGTTACTGCTTTCATTACTGTGGCATTGACATACTTCCAGCTTGCTGCTGAAGATCATGAATGGTGGTGGAGATCATTCCTATGCGGTGGTTCAACTGGATTATTTATCTATGCCTATTGTCTGTATTACTACTATGCCCGCTCCGATATGTCTGGTTTCATGCAAACCTCATTTTTCTTTGGATACATGGCCTGCATATGCTTTGGTTTCTTCTTGATGCTTGGAACTGTTGGATTCCGTGCAGCATTGTTCTTTGTCCGCCACATATACCGATCCATCAAGTGCGAGTAG

Protein sequence

>Msa0961420

MAKMNPLFILAFFSISSLFISTVRSDSSDKRYKEGDLVPLFANKVGPFHNPSETYRYFDLPFCIPDHLKEKKEALGEVLNGDRLVSAPYQLEFQKDKDSLSVCKKTLTKEEVANFRSAVRKDYYFQMYYDDLPIWGFIGKVDKEGKDPSDYRYYLYKHIHFDIFYNKDRVIEINVRTDPNALVDVTEDNEVDVEFFYTVKWKETNTPFEKRMDKYSQPSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEETAEDQEETGWKYIHGDVFRFPKFKSVFAAALGSGTQLFTLTVFIFILALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIVYNATAALPFGTIVVIVLIWTLVTSPLLVLGGIAGKNSKAEFQAPVRTTKYPREIPPLPWYRGAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICFGFFLMLGTVGFRAALFFVRHIYRSIKCE*