AlfalfaGEDB | Msa0961420

M. sativa cultivar zhongmu-4 / Msa0961420

KEGG: K17085
GO: GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120
PFAM: PF02990.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961420	sp\|Q9ZPS7\|TMN3_ARATH	88.307	573	66	1	21	592	20	592	0.0	1038

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961420	G7KJN8	98.986	592	2	1	1	592	1	588	0.0	1205

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0961420	0.803881	2.820790e-49	-8.615850e-47
Msa0000550	Msa0961420	0.834085	3.673992e-56	-8.615850e-47
Msa0004280	Msa0961420	-0.803631	3.178668e-49	-8.615850e-47
Msa0006700	Msa0961420	-0.858762	6.595672e-63	-8.615850e-47
Msa0007080	Msa0961420	-0.812122	4.969642e-51	-8.615850e-47
Msa0007230	Msa0961420	-0.807015	6.213967e-50	-8.615850e-47
Msa0008050	Msa0961420	-0.830546	2.764122e-55	-8.615850e-47
Msa0008850	Msa0961420	-0.827970	1.165323e-54	-8.615850e-47
Msa0011720	Msa0961420	-0.861106	1.294846e-63	-8.615850e-47
Msa0020630	Msa0961420	-0.854828	9.487122e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961420	MtrunA17_Chr6g0480551	98.986	592	2	1	1	592	1	588	0.0	1205
Msa0961420	MtrunA17_Chr8g0375501	87.910	579	69	1	15	592	13	591	0.0	1048
Msa0961420	MtrunA17_Chr5g0434001	77.739	575	126	1	20	592	33	607	0.0	946
Msa0961420	MtrunA17_Chr4g0026371	47.909	574	293	3	21	592	20	589	0.0	564
Msa0961420	MtrunA17_Chr8g0380651	39.410	576	333	6	25	592	22	589	8.26e-145	431
Msa0961420	MtrunA17_Chr2g0277491	40.522	575	326	7	25	592	18	583	3.74e-144	429
Msa0961420	MtrunA17_Chr8g0342031	33.386	632	358	9	12	592	29	648	4.80e-125	382
Msa0961420	MtrunA17_Chr1g0150181	32.248	614	361	9	28	592	30	637	1.32e-110	344
Msa0961420	MtrunA17_Chr3g0136881	32.237	608	357	8	34	592	35	636	9.16e-110	342
Msa0961420	MtrunA17_Chr4g0065301	27.969	640	375	17	27	592	29	656	2.67e-81	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961420	AT2G01970.1	88.307	573	66	1	21	592	20	592	0.0	1038
Msa0961420	AT1G14670.1	87.916	571	68	1	23	592	22	592	0.0	1005
Msa0961420	AT5G37310.1	83.624	574	93	1	20	592	20	593	0.0	978
Msa0961420	AT5G37310.2	83.624	574	93	1	20	592	20	593	0.0	978
Msa0961420	AT1G08350.3	50.613	571	276	4	25	592	22	589	0.0	615
Msa0961420	AT1G08350.2	50.613	571	276	4	25	592	22	589	0.0	615
Msa0961420	AT1G08350.1	48.924	511	255	4	85	592	1	508	0.0	531
Msa0961420	AT1G08350.4	48.362	519	253	4	25	540	22	528	0.0	528
Msa0961420	AT1G10950.1	39.373	574	334	6	25	592	24	589	1.33e-141	423
Msa0961420	AT1G55130.1	32.543	633	364	9	15	592	13	637	6.50e-119	366

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Find 173 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGTATGCACATGATG+AGG	0.621763	6_3:+83089475	Msa0961420:intron
AAACTCACAGGGTAAACAGT+TGG	0.533116	6_3:-83089604	None:intergenic
AAAGAGAAGAAAGAAGCATT+GGG	0.492920	6_3:+83088784	Msa0961420:CDS
AAAGGACAAGGACTCTCTGT+CGG	0.625130	6_3:+83088861	Msa0961420:CDS
AAATGATGGGGTAGCGAGGA+CGG	0.550197	6_3:-83089231	None:intergenic
AAATGCCTACTCGCACTTGA+TGG	0.387744	6_3:-83091673	None:intergenic
AACCAACCTGGTATACAAAA+TGG	0.355606	6_3:-83087784	None:intergenic
AACGGATCCAAATGCCCTTG+TGG	0.580190	6_3:+83089107	Msa0961420:CDS
AACTCACAGGGTAAACAGTT+GGG	0.494448	6_3:-83089603	None:intergenic
AAGAAATGGAGAAGAAGGCG+AGG	0.559753	6_3:-83087267	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTACCAACCAATCTTCAA+TGG	+	chr6_3:83087222-83087241	Msa0961420:exon	30.0%
TCAGATAAACGTTACAAAGA+AGG	+	chr6_3:83087322-83087341	Msa0961420:CDS	30.0%
AAGTACCTTGGATTATGAAA+AGG	-	chr6_3:83087382-83087401	None:intergenic	30.0%
AGATCAATTGTGGTTAATGA+TGG	+	chr6_3:83088159-83088178	Msa0961420:intron	30.0%
CAACTCATGATGTTAAAACA+TGG	+	chr6_3:83088388-83088407	Msa0961420:intron	30.0%
TGGTAATTTGGCAAGTAAAT+TGG	-	chr6_3:83088627-83088646	None:intergenic	30.0%
GAAAATCAGTTGTGGTAATT+TGG	-	chr6_3:83088639-83088658	None:intergenic	30.0%
ACTGATAAGAAAATCAGTTG+TGG	-	chr6_3:83088647-83088666	None:intergenic	30.0%
GGTAGTATCTATAATCACTA+GGG	-	chr6_3:83089023-83089042	None:intergenic	30.0%
AGGTAGTATCTATAATCACT+AGG	-	chr6_3:83089024-83089043	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	83087015	83091959	83087015	ID=Msa0961420;Name=Msa0961420
chr6_3	mRNA	83087015	83091959	83087015	ID=Msa0961420-mRNA-1;Parent=Msa0961420;Name=Msa0961420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=226\|1\|1\|1\|1\|1\|7\|270\|592
chr6_3	exon	83087015	83087395	83087015	ID=Msa0961420-mRNA-1:exon:14844;Parent=Msa0961420-mRNA-1
chr6_3	exon	83087759	83087799	83087759	ID=Msa0961420-mRNA-1:exon:14845;Parent=Msa0961420-mRNA-1
chr6_3	exon	83088776	83089358	83088776	ID=Msa0961420-mRNA-1:exon:14846;Parent=Msa0961420-mRNA-1
chr6_3	exon	83089481	83089618	83089481	ID=Msa0961420-mRNA-1:exon:14847;Parent=Msa0961420-mRNA-1
chr6_3	exon	83089738	83089894	83089738	ID=Msa0961420-mRNA-1:exon:14848;Parent=Msa0961420-mRNA-1
chr6_3	exon	83089995	83090479	83089995	ID=Msa0961420-mRNA-1:exon:14849;Parent=Msa0961420-mRNA-1
chr6_3	exon	83091470	83091959	83091470	ID=Msa0961420-mRNA-1:exon:14850;Parent=Msa0961420-mRNA-1
chr6_3	five_prime_UTR	83087015	83087240	83087015	ID=Msa0961420-mRNA-1:five_prime_utr;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83087241	83087395	83087241	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83087759	83087799	83087759	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83088776	83089358	83088776	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83089481	83089618	83089481	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83089738	83089894	83089738	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83089995	83090479	83089995	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	CDS	83091470	83091689	83091470	ID=Msa0961420-mRNA-1:cds;Parent=Msa0961420-mRNA-1
chr6_3	three_prime_UTR	83091690	83091959	83091690	ID=Msa0961420-mRNA-1:three_prime_utr;Parent=Msa0961420-mRNA-1

Gene Sequence

>Msa0961420

ATGGCGAAGATGAATCCATTATTCATCCTCGCCTTCTTCTCCATTTCTTCTCTCTTCATCTCCACCGTCAGATCTGATTCATCAGATAAACGTTACAAAGAAGGAGATCTTGTTCCTCTCTTCGCTAACAAAGTTGGTCCTTTTCATAATCCAAGTGAGACTTATCGGTATTTTGATCTGCCATTTTGTATACCAGATCATTTGAAAGAGAAGAAAGAAGCATTGGGTGAAGTGTTGAATGGGGATAGGTTGGTTAGTGCTCCTTATCAGCTTGAGTTCCAAAAGGACAAGGACTCTCTGTCGGTTTGCAAGAAGACACTTACAAAAGAAGAAGTGGCGAATTTTCGGTCCGCTGTTCGTAAGGACTACTATTTTCAGATGTATTATGATGATTTGCCTATTTGGGGTTTCATAGGGAAGGTTGATAAGGAAGGGAAAGACCCTAGTGATTATAGATACTACCTTTACAAGCACATCCATTTTGATATATTTTATAACAAGGATCGTGTTATTGAGATCAATGTGCGAACGGATCCAAATGCCCTTGTGGATGTTACAGAGGACAATGAAGTTGATGTAGAGTTTTTCTATACTGTGAAATGGAAGGAGACTAACACTCCCTTCGAGAAGAGGATGGACAAGTACTCTCAGCCGTCCTCGCTACCCCATCATTTGGAAATCCACTGGTTTTCGATTATCAATTCGTGCGTCACAGTCCTCCTCTTGACTGGTTTTCTTGCAACTATTTTGATGCGTGTCCTTAAGAATGATTTTGTCAAGTATGCACATGATGAGGAGACTGCAGAGGATCAGGAAGAGACTGGCTGGAAATACATCCACGGTGATGTTTTTAGGTTTCCCAAGTTCAAATCTGTATTTGCAGCCGCTCTTGGATCTGGTACCCAACTGTTTACCCTTACGGTGTTCATATTCATATTGGCACTTGTTGGTGTATTTTATCCGTACAACCGAGGGGCTCTATTCACTGCACTTGTTGTTATATATGCACTCACTTCAGGAATTGCTGGCTATACTGCTACCTCATTCTATTGTCAACTGGAAGGAACAAACTGGGTTCGGAATCTACTATTGACTGGATGCCTTTTCTGTGGGCCTCTATTTCTTACATTTTGCTTTCTGAACACTGTTGCAATTGTCTACAATGCTACTGCCGCTCTCCCTTTCGGCACAATTGTCGTTATAGTTCTCATATGGACACTTGTTACGTCTCCTCTACTTGTATTAGGAGGGATTGCTGGGAAGAACAGCAAGGCTGAATTCCAAGCTCCAGTCCGCACAACTAAATATCCAAGGGAAATTCCTCCTTTGCCATGGTATCGGGGAGCAATTCCTCAGATGGCAATGGCAGGATTTTTGCCTTTCAGTGCTATTTACATCGAACTTTATTATATATTTGCCAGTGTCTGGGGCCACAGAATTTACACAATCTACAGCATTCTGTTTATTGTCTTCATCATTCTCTTGATTGTTACTGCTTTCATTACTGTGGCATTGACATACTTCCAGCTTGCTGCTGAAGATCATGAATGGTGGTGGAGATCATTCCTATGCGGTGGTTCAACTGGATTATTTATCTATGCCTATTGTCTGTATTACTACTATGCCCGCTCCGATATGTCTGGTTTCATGCAAACCTCATTTTTCTTTGGATACATGGCCTGCATATGCTTTGGTTTCTTCTTGATGCTTGGAACTGTTGGATTCCGTGCAGCATTGTTCTTTGTCCGCCACATATACCGATCCATCAAGTGCGAGTAG

Protein sequence

>Msa0961420

MAKMNPLFILAFFSISSLFISTVRSDSSDKRYKEGDLVPLFANKVGPFHNPSETYRYFDLPFCIPDHLKEKKEALGEVLNGDRLVSAPYQLEFQKDKDSLSVCKKTLTKEEVANFRSAVRKDYYFQMYYDDLPIWGFIGKVDKEGKDPSDYRYYLYKHIHFDIFYNKDRVIEINVRTDPNALVDVTEDNEVDVEFFYTVKWKETNTPFEKRMDKYSQPSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEETAEDQEETGWKYIHGDVFRFPKFKSVFAAALGSGTQLFTLTVFIFILALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIVYNATAALPFGTIVVIVLIWTLVTSPLLVLGGIAGKNSKAEFQAPVRTTKYPREIPPLPWYRGAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICFGFFLMLGTVGFRAALFFVRHIYRSIKCE*