AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844900 MtrunA17_Chr5g0416131 68.627 204 20 2 1 160 28 231 2.66e-86 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGACCAACTCGAAAATTT+TGG 0.194813 5_4:-23523101 None:intergenic
TTCGAGTTGGTCATCGTAAA+TGG 0.222053 5_4:+23523109 Msa0844900:CDS
GATACTCCTACACAGGTTTC+TGG 0.225437 5_4:+23524904 Msa0844900:intron
TTGAAAGGATCGATCAATTC+TGG 0.265574 5_4:+23524039 Msa0844900:CDS
GAATCGGCATCTTCACCTTT+AGG 0.294816 5_4:-23524069 None:intergenic
TGCTGATTCCGCTGATGCTC+AGG 0.426663 5_4:+23528462 Msa0844900:CDS
TTGGTCATCGTAAATGGAAT+AGG 0.450217 5_4:+23523115 Msa0844900:CDS
TGCTGATTCCACTGATGCTC+AGG 0.460947 5_4:+23523796 Msa0844900:CDS
GTCGCCATCCTTTACTGTTA+CGG 0.466106 5_4:+23523216 Msa0844900:CDS
TCTGGCATCAACTCATGTAC+AGG 0.472467 5_4:-23526113 None:intergenic
CAATGTTACCCGCCACCTAC+AGG 0.475644 5_4:+23523248 Msa0844900:CDS
GAAGCTGAAAGAGAATATAC+TGG 0.476368 5_4:+23529455 Msa0844900:intron
TGCCGATTCCACTGATGCTC+AGG 0.477881 5_4:+23524083 Msa0844900:CDS
TGAAAGGATCGATCAATTCT+GGG 0.483186 5_4:+23524040 Msa0844900:CDS
ATTTCGAAGTGCTATTGCTA+TGG 0.486080 5_4:+23524927 Msa0844900:CDS
TACCTGAGCATCAGTGGAAT+CGG 0.498451 5_4:-23524085 None:intergenic
TGTCGCGCCATGACGATAAG+TGG 0.509557 5_4:+23523076 Msa0844900:exon
TTTCGAAGTGCTATTGCTAT+GGG 0.511590 5_4:+23524928 Msa0844900:CDS
TCGTTGTAGTTGCTGTTGAA+AGG 0.524604 5_4:+23524024 Msa0844900:intron
CTGTAGGTGGCGGGTAACAT+TGG 0.525660 5_4:-23523247 None:intergenic
TTTGGCTCCACTTATCGTCA+TGG 0.540653 5_4:-23523083 None:intergenic
GAGAATATACTGGCCGGTGG+AGG 0.547874 5_4:+23529465 Msa0844900:CDS
GTAAGAACTTTGACCTCCAC+CGG 0.553842 5_4:-23529478 None:intergenic
ATTTGTTACCTGAGCATCAG+TGG 0.553896 5_4:-23524091 None:intergenic
CTGGCATCAACTCATGTACA+GGG 0.558861 5_4:-23526112 None:intergenic
AATTCTGGGGATCAACCTAA+AGG 0.566615 5_4:+23524054 Msa0844900:CDS
ATTTGTTACCTGAGCATCAG+TGG 0.569263 5_4:-23523804 None:intergenic
AGAATGTGCCGTAACAGTAA+AGG 0.572863 5_4:-23523224 None:intergenic
CACATGTACCTGTAGGTGGC+GGG 0.575850 5_4:-23523256 None:intergenic
AAGTCCGTGGATCAGGCTGA+GGG 0.580724 5_4:+23523758 Msa0844900:intron
ACACATGTACCTGTAGGTGG+CGG 0.584747 5_4:-23523257 None:intergenic
AGCTCGACTATGTCCTCCAC+CGG 0.602146 5_4:-23528434 None:intergenic
CTGAAAGAGAATATACTGGC+CGG 0.606677 5_4:+23529459 Msa0844900:CDS
ACAAGGTACGGGTTTAAACT+CGG 0.621278 5_4:+23522996 None:intergenic
AGAAGACTACGAGCCGGTGG+AGG 0.626897 5_4:+23528421 Msa0844900:CDS
GTTGGTTACCTGAGCATCAG+CGG 0.636301 5_4:-23528470 None:intergenic
TCCGTGGATCAGGCTGAGGG+TGG 0.641801 5_4:+23523761 Msa0844900:intron
GAAAGAAGACTACGAGCCGG+TGG 0.658227 5_4:+23528418 Msa0844900:CDS
AAAGAGAATATACTGGCCGG+TGG 0.661701 5_4:+23529462 Msa0844900:CDS
GCTGAAAGAAGACTACGAGC+CGG 0.663813 5_4:+23528415 Msa0844900:CDS
ACAATGCAAATCATTCAACA+AGG 0.669533 5_4:+23526078 Msa0844900:CDS
TGTGCCGTAACAGTAAAGGA+TGG 0.670732 5_4:-23523220 None:intergenic
CATACACATGTACCTGTAGG+TGG 0.678311 5_4:-23523260 None:intergenic
GAAAGGATCGATCAATTCTG+GGG 0.687692 5_4:+23524041 Msa0844900:CDS
CAATGCAAATCATTCAACAA+GGG 0.698122 5_4:+23526079 Msa0844900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATTTTTTTTTTTTA+AGG - chr5_4:23523044-23523063 None:intergenic 0.0%
!!! GATTTTACTTTTTTAAATTT+GGG + chr5_4:23523408-23523427 Msa0844900:intron 10.0%
!!! CTATTTTCAAATTTTTAATA+GGG - chr5_4:23525774-23525793 None:intergenic 10.0%
!!! TACATATTATTTTAGTAAAA+GGG - chr5_4:23525979-23525998 None:intergenic 10.0%
!!! ATACATATTATTTTAGTAAA+AGG - chr5_4:23525980-23525999 None:intergenic 10.0%
!! AACAAAAAATAAATTATACA+AGG - chr5_4:23527982-23528001 None:intergenic 10.0%
!!! GGATTTTACTTTTTTAAATT+TGG + chr5_4:23523407-23523426 Msa0844900:intron 15.0%
!! AAAATGTAATGTACTAATTT+AGG - chr5_4:23523947-23523966 None:intergenic 15.0%
!! TTAAAGAAAGAATAATACTT+TGG - chr5_4:23524468-23524487 None:intergenic 15.0%
!!! TTTAAACTTTGTAATTTGTA+AGG + chr5_4:23524619-23524638 Msa0844900:intron 15.0%
!!! TATTATTTTACAAGTTACTT+GGG + chr5_4:23524747-23524766 Msa0844900:intron 15.0%
!! CATGTTTATAAATTGTAATA+TGG - chr5_4:23524848-23524867 None:intergenic 15.0%
!! ATTACAATTTATAAACATGA+TGG + chr5_4:23524849-23524868 Msa0844900:intron 15.0%
!! TTACAATTTATAAACATGAT+GGG + chr5_4:23524850-23524869 Msa0844900:intron 15.0%
!! AATTGTAAATTGTAATTAAC+TGG + chr5_4:23525557-23525576 Msa0844900:intron 15.0%
!!! TCATTTTCAATAGAATATTT+AGG + chr5_4:23525676-23525695 Msa0844900:intron 15.0%
!!! GCTATTTTCAAATTTTTAAT+AGG - chr5_4:23525775-23525794 None:intergenic 15.0%
!!! ATTAAATCAGTATTTTCTTT+AGG - chr5_4:23526044-23526063 None:intergenic 15.0%
!! ATGAATATGCAAATTATATT+TGG + chr5_4:23526215-23526234 Msa0844900:intron 15.0%
!! ATTGAAACAAAATATATCAA+AGG - chr5_4:23526910-23526929 None:intergenic 15.0%
!!! TTTGTTATTATCAATTGAAT+GGG - chr5_4:23526941-23526960 None:intergenic 15.0%
!!! CATACAAATTATATTTTGTT+TGG + chr5_4:23528229-23528248 Msa0844900:intron 15.0%
!!! AAAGAATATACTGATTTTAT+AGG + chr5_4:23528762-23528781 Msa0844900:intron 15.0%
!!! TTTACAGAACTTTTTTTTTT+TGG - chr5_4:23529234-23529253 None:intergenic 15.0%
!! ATAAAATAACACAATTTATG+GGG - chr5_4:23529390-23529409 None:intergenic 15.0%
!! CATAAAATAACACAATTTAT+GGG - chr5_4:23529391-23529410 None:intergenic 15.0%
!! ACATAAAATAACACAATTTA+TGG - chr5_4:23529392-23529411 None:intergenic 15.0%
!! TGATCATAACATAAAAATAT+AGG - chr5_4:23529435-23529454 None:intergenic 15.0%
!!! GTGTTTTGTTAGTAAAATTT+AGG + chr5_4:23523386-23523405 Msa0844900:intron 20.0%
!!! CTTTTTTAAATTTGGGTTAT+TGG + chr5_4:23523415-23523434 Msa0844900:intron 20.0%
!!! ACATTTTACTTCTCAATTAT+AGG + chr5_4:23523960-23523979 Msa0844900:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5_4:23524404-23524423 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr5_4:23524438-23524457 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr5_4:23524439-23524458 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG - chr5_4:23524502-23524521 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG + chr5_4:23524501-23524520 Msa0844900:intron 20.0%
!!! CAAGTAACTTGTAAAATAAT+AGG - chr5_4:23524748-23524767 None:intergenic 20.0%
!!! CTATTATTTTACAAGTTACT+TGG + chr5_4:23524746-23524765 Msa0844900:intron 20.0%
!! AAGTATTATAGAATGTTAAC+AGG + chr5_4:23525132-23525151 Msa0844900:intron 20.0%
!! TATATCAGTTAGTTATTAGT+TGG - chr5_4:23525299-23525318 None:intergenic 20.0%
!! ACTAAAATAATATGTATGCA+CGG + chr5_4:23525983-23526002 Msa0844900:intron 20.0%
!!! AAAATACTGATTTAATAGTC+TGG + chr5_4:23526048-23526067 Msa0844900:intron 20.0%
!! CATAAACAAGAAATTATTAC+TGG - chr5_4:23526198-23526217 None:intergenic 20.0%
!!! CTTTGTTATTATCAATTGAA+TGG - chr5_4:23526942-23526961 None:intergenic 20.0%
!! TAATACCAATAGAATAGATA+CGG + chr5_4:23527862-23527881 Msa0844900:intron 20.0%
!! AATGAAGTAAACAAAAAAGT+TGG - chr5_4:23527951-23527970 None:intergenic 20.0%
!!! ATCACATCAATATTTTCTTT+AGG - chr5_4:23528070-23528089 None:intergenic 20.0%
!!! GAATGTAACTATTATTGATT+CGG + chr5_4:23528308-23528327 Msa0844900:intron 20.0%
!! CTGAATATGCAAATTATATT+TGG + chr5_4:23528939-23528958 Msa0844900:intron 20.0%
!! TATGCAAATTATATTTGGTT+TGG + chr5_4:23526220-23526239 Msa0844900:intron 20.0%
!! ACAGAATTTATATTGAAAAC+AGG - chr5_4:23529200-23529219 None:intergenic 20.0%
!! TAAAATAACACAATTTATGG+GGG - chr5_4:23529389-23529408 None:intergenic 20.0%
!! ATGATGGTGATTGTTAATTA+AGG + chr5_4:23523313-23523332 Msa0844900:intron 25.0%
!! TGATGGTGATTGTTAATTAA+GGG + chr5_4:23523314-23523333 Msa0844900:intron 25.0%
!!! AATTTCAAGTTGTAAAACCT+TGG - chr5_4:23523462-23523481 None:intergenic 25.0%
!! TTTACTATTCGAGTTTACTT+AGG - chr5_4:23523503-23523522 None:intergenic 25.0%
! TAAACTCGAATAGTAAACAT+CGG + chr5_4:23523506-23523525 Msa0844900:intron 25.0%
! TTCATCTCATTCTATGTATT+TGG + chr5_4:23523873-23523892 Msa0844900:intron 25.0%
! TACAAGGTAGAAAGAATAAA+TGG - chr5_4:23524191-23524210 None:intergenic 25.0%
!! TGTGATTTGATTTAAAGGAT+TGG - chr5_4:23524281-23524300 None:intergenic 25.0%
!! TTCTCTGTGATTTGATTTAA+AGG - chr5_4:23524286-23524305 None:intergenic 25.0%
! AAACAAACCAATAGTTGATT+AGG + chr5_4:23524492-23524511 Msa0844900:intron 25.0%
!!! TTTTACTGCTTTATTCATTG+AGG + chr5_4:23524676-23524695 Msa0844900:intron 25.0%
!! AATTTATAAACATGATGGGA+AGG + chr5_4:23524854-23524873 Msa0844900:intron 25.0%
!! TAATGATGAAGTGGATATTT+TGG + chr5_4:23525038-23525057 Msa0844900:intron 25.0%
! ATTATCTATGCTAAGATGAA+AGG + chr5_4:23525444-23525463 Msa0844900:intron 25.0%
! AAGTACTTATACTATGATAC+AGG - chr5_4:23525473-23525492 None:intergenic 25.0%
! TGTATCATAGTATAAGTACT+TGG + chr5_4:23525472-23525491 Msa0844900:intron 25.0%
! GTATCATAGTATAAGTACTT+GGG + chr5_4:23525473-23525492 Msa0844900:intron 25.0%
! CAACTGTAACTAATTGATTA+TGG - chr5_4:23525584-23525603 None:intergenic 25.0%
! CATAATCAATTAGTTACAGT+TGG + chr5_4:23525582-23525601 Msa0844900:intron 25.0%
! AGTGATTAACTATCTAACTA+GGG - chr5_4:23525617-23525636 None:intergenic 25.0%
! TAGTGATTAACTATCTAACT+AGG - chr5_4:23525618-23525637 None:intergenic 25.0%
! AATTTGAGAGAAAATTGAGT+TGG - chr5_4:23525707-23525726 None:intergenic 25.0%
! TTACACATTGAATTACAACA+TGG + chr5_4:23525851-23525870 Msa0844900:intron 25.0%
! AAACAACAGATAATGAATGA+TGG - chr5_4:23526247-23526266 None:intergenic 25.0%
!! ATTCATTATCTGTTGTTTGT+TGG + chr5_4:23526249-23526268 Msa0844900:intron 25.0%
! AAGTACTATAGAATATGAAC+AGG + chr5_4:23526411-23526430 Msa0844900:intron 25.0%
! TAGTTGGATTCTGTTATAAA+AGG - chr5_4:23526558-23526577 None:intergenic 25.0%
! GTTAGTACTTAATAGTTAGT+TGG - chr5_4:23526574-23526593 None:intergenic 25.0%
! CTAACCAATGTTTAAAAAAC+CGG + chr5_4:23526654-23526673 Msa0844900:intron 25.0%
! TATCAATTGAATGGGATAAT+AGG - chr5_4:23526933-23526952 None:intergenic 25.0%
!!! ATAGAAAGTATTCCCAAAAT+CGG - chr5_4:23527048-23527067 None:intergenic 25.0%
! TACTTTCTATACCAAAAGAA+AGG + chr5_4:23527058-23527077 Msa0844900:intron 25.0%
! TACTTAGTTTCTGAATCATT+TGG - chr5_4:23527309-23527328 None:intergenic 25.0%
! ATTTGATATAACTCTGATTG+TGG - chr5_4:23527573-23527592 None:intergenic 25.0%
! AAAATATTGATGTGATAGTC+CGG + chr5_4:23528074-23528093 Msa0844900:intron 25.0%
! ACATATCATAGAACATCTTT+AGG + chr5_4:23528109-23528128 Msa0844900:intron 25.0%
! CATATCATAGAACATCTTTA+GGG + chr5_4:23528110-23528129 Msa0844900:intron 25.0%
!! TTTGTCATCCTTTAAAAACA+TGG + chr5_4:23528196-23528215 Msa0844900:intron 25.0%
!!! CAACAATACCATGTTTTTAA+AGG - chr5_4:23528207-23528226 None:intergenic 25.0%
! TACATTCTTTAAGCTCATAA+AGG - chr5_4:23528295-23528314 None:intergenic 25.0%
! GCTTTCTGATCATAAAATAT+GGG - chr5_4:23528397-23528416 None:intergenic 25.0%
! AGCTTTCTGATCATAAAATA+TGG - chr5_4:23528398-23528417 None:intergenic 25.0%
! TTATAATGAGATGGAATCAA+AGG - chr5_4:23528634-23528653 None:intergenic 25.0%
! AAATCAGTATATTCTTTACG+AGG - chr5_4:23528759-23528778 None:intergenic 25.0%
!!! AATATACTGATTTTATAGGC+TGG + chr5_4:23528766-23528785 Msa0844900:intron 25.0%
! CAATACAAATCATTCAAGAT+CGG + chr5_4:23528797-23528816 Msa0844900:intron 25.0%
! CAGCAACAACAAATTATTAT+TGG - chr5_4:23528922-23528941 None:intergenic 25.0%
! TGAAAATTAAAAATCATGCC+AGG - chr5_4:23529112-23529131 None:intergenic 25.0%
! GATGGTTAACTATCTAAATA+TGG - chr5_4:23529313-23529332 None:intergenic 25.0%
!! CAAGTTTAATTTGTGCATGA+TGG + chr5_4:23523297-23523316 Msa0844900:intron 30.0%
AACACATAAACGACTTAGAT+AGG - chr5_4:23523371-23523390 None:intergenic 30.0%
TACTTAGGTAAAACTAGTTC+AGG - chr5_4:23523488-23523507 None:intergenic 30.0%
! TTTACTGAGGTTGATTAACT+CGG + chr5_4:23523553-23523572 Msa0844900:intron 30.0%
GCATGTAAAAACGTAAACTT+GGG + chr5_4:23523641-23523660 Msa0844900:intron 30.0%
TGAGTTAAACACTCAATTTG+TGG + chr5_4:23523672-23523691 Msa0844900:intron 30.0%
TGCTCAGGTAACAAATAAAA+CGG + chr5_4:23523811-23523830 Msa0844900:intron 30.0%
AAGACAGAAACGAGTTATTT+AGG - chr5_4:23523919-23523938 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5_4:23524584-23524603 Msa0844900:intron 30.0%
! ACTTTGTAATTTGTAAGGCT+TGG + chr5_4:23524624-23524643 Msa0844900:intron 30.0%
GCAACAAAAAGTGAATAGAT+TGG + chr5_4:23524957-23524976 Msa0844900:CDS 30.0%
! TTTGCTGGTTAATTGTTAAC+AGG + chr5_4:23524998-23525017 Msa0844900:intron 30.0%
! TTGCTGGTTAATTGTTAACA+GGG + chr5_4:23524999-23525018 Msa0844900:intron 30.0%
GCTAGTATTTAATGATGAAG+TGG + chr5_4:23525029-23525048 Msa0844900:intron 30.0%
CTGATATAGAAGTTAGTTAG+TGG - chr5_4:23525273-23525292 None:intergenic 30.0%
ATCAATTAGTTACAGTTGGA+TGG + chr5_4:23525586-23525605 Msa0844900:intron 30.0%
! TAACATTGATGACTCAGATA+TGG - chr5_4:23525644-23525663 None:intergenic 30.0%
ATGTATGTGAATACACCAAA+TGG + chr5_4:23525901-23525920 Msa0844900:intron 30.0%
AAATAATATGTATGCACGGA+AGG + chr5_4:23525987-23526006 Msa0844900:intron 30.0%
TGATTTAATAGTCTGGTTAC+AGG + chr5_4:23526055-23526074 Msa0844900:intron 30.0%
ACAATGCAAATCATTCAACA+AGG + chr5_4:23526078-23526097 Msa0844900:CDS 30.0%
CAATGCAAATCATTCAACAA+GGG + chr5_4:23526079-23526098 Msa0844900:CDS 30.0%
GTTCTTGTGAATTAATCAAG+AGG - chr5_4:23526288-23526307 None:intergenic 30.0%
! ACGAAGAATATTTTGTAGTC+TGG + chr5_4:23526338-23526357 Msa0844900:intron 30.0%
TCTGTTATAAAAGGTAGTAC+TGG - chr5_4:23526549-23526568 None:intergenic 30.0%
!!! CGGTTTTTTAAACATTGGTT+AGG - chr5_4:23526656-23526675 None:intergenic 30.0%
!!! TGTTCCGGTTTTTTAAACAT+TGG - chr5_4:23526661-23526680 None:intergenic 30.0%
! ACGGTTTAAACCAGTTTTTA+CGG - chr5_4:23526776-23526795 None:intergenic 30.0%
!! TAGAAAGTATTCCCAAAATC+GGG - chr5_4:23527047-23527066 None:intergenic 30.0%
! AGTGTTATGAACCTTTCTTT+TGG - chr5_4:23527072-23527091 None:intergenic 30.0%
! CAGCAATGAAATGTGAATTT+TGG + chr5_4:23527177-23527196 Msa0844900:intron 30.0%
AAGTTCAAAGAAATTCCACA+CGG + chr5_4:23527207-23527226 Msa0844900:intron 30.0%
AATATACATTTGCAGCCTAA+TGG - chr5_4:23527271-23527290 None:intergenic 30.0%
TGATTCAGAAACTAAGTACA+AGG + chr5_4:23527311-23527330 Msa0844900:intron 30.0%
TGTATACGAGTTTGTGAAAT+TGG + chr5_4:23527646-23527665 Msa0844900:intron 30.0%
CAAGATGGTCAATTAGTTAA+AGG - chr5_4:23527756-23527775 None:intergenic 30.0%
CTATGATGGTTAACTATCTA+TGG - chr5_4:23527804-23527823 None:intergenic 30.0%
CGCATAAAAAATTTAAGTGC+TGG + chr5_4:23528013-23528032 Msa0844900:intron 30.0%
!! AAAAATTTAAGTGCTGGTCT+TGG + chr5_4:23528019-23528038 Msa0844900:intron 30.0%
!! AAAATTTAAGTGCTGGTCTT+GGG + chr5_4:23528020-23528039 Msa0844900:intron 30.0%
!!! TTTAGGGTTTTGTTTGTACA+TGG + chr5_4:23528126-23528145 Msa0844900:intron 30.0%
!!! GTTTTGTTTGTACATGGAAA+AGG + chr5_4:23528132-23528151 Msa0844900:intron 30.0%
ACTTGATGCTTGAAATAAGT+GGG + chr5_4:23528847-23528866 Msa0844900:intron 30.0%
TGAAATAAGTGGGAAAATAC+AGG + chr5_4:23528857-23528876 Msa0844900:intron 30.0%
! TTGAAATATCAATCTAGCTC+TGG + chr5_4:23529150-23529169 Msa0844900:intron 30.0%
! GATGACCAACTCGAAAATTT+TGG - chr5_4:23523104-23523123 None:intergenic 35.0%
TTGGTCATCGTAAATGGAAT+AGG + chr5_4:23523115-23523134 Msa0844900:CDS 35.0%
AAACATACACATGTACCTGT+AGG - chr5_4:23523266-23523285 None:intergenic 35.0%
TGATTCTAAACTCTTGACCA+AGG + chr5_4:23523442-23523461 Msa0844900:intron 35.0%
! TGTTAACTTGGAGGTAAACT+TGG - chr5_4:23523613-23523632 None:intergenic 35.0%
ATGCCAAAAACGTGTTAACT+TGG - chr5_4:23523625-23523644 None:intergenic 35.0%
GGCATGTAAAAACGTAAACT+TGG + chr5_4:23523640-23523659 Msa0844900:intron 35.0%
CAGCGCGAAATTAATATAAC+AGG - chr5_4:23523714-23523733 None:intergenic 35.0%
AAACGGTTTAATGCTTACAG+AGG + chr5_4:23523828-23523847 Msa0844900:intron 35.0%
TTGAAAGGATCGATCAATTC+TGG + chr5_4:23524039-23524058 Msa0844900:CDS 35.0%
TGAAAGGATCGATCAATTCT+GGG + chr5_4:23524040-23524059 Msa0844900:CDS 35.0%
GGTAGAAAGAATAAATGGCA+AGG - chr5_4:23524186-23524205 None:intergenic 35.0%
TGGACGTCAGTTATACAAAA+AGG - chr5_4:23524261-23524280 None:intergenic 35.0%
!! AAGCGACACACATTTTGAAA+CGG - chr5_4:23524338-23524357 None:intergenic 35.0%
ATTGCACACAGATTAAGGAA+TGG - chr5_4:23524558-23524577 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr5_4:23524558-23524577 Msa0844900:intron 35.0%
CACTTTCAATTCCATTAACC+AGG - chr5_4:23524812-23524831 None:intergenic 35.0%
GAAGAAATCTGTGGTTAACA+TGG + chr5_4:23524880-23524899 Msa0844900:intron 35.0%
! ATTTCGAAGTGCTATTGCTA+TGG + chr5_4:23524927-23524946 Msa0844900:CDS 35.0%
! TTTCGAAGTGCTATTGCTAT+GGG + chr5_4:23524928-23524947 Msa0844900:CDS 35.0%
AAGACAATGAGAGAGAAAAC+AGG + chr5_4:23525174-23525193 Msa0844900:intron 35.0%
AGACAATGAGAGAGAAAACA+GGG + chr5_4:23525175-23525194 Msa0844900:intron 35.0%
AACTGATATAATTGCTGCAG+TGG + chr5_4:23525309-23525328 Msa0844900:intron 35.0%
AGTTTGTGCTCATGACATTA+AGG + chr5_4:23525362-23525381 Msa0844900:intron 35.0%
AGAACGACTGAGATAGAAAA+AGG - chr5_4:23525414-23525433 None:intergenic 35.0%
CTTCCAAATCTATGTGGTAT+AGG - chr5_4:23525733-23525752 None:intergenic 35.0%
TACCACATAGATTTGGAAGT+AGG + chr5_4:23525734-23525753 Msa0844900:intron 35.0%
TACCTACTTCCAAATCTATG+TGG - chr5_4:23525739-23525758 None:intergenic 35.0%
TATGTGAATACACCAAATGG+TGG + chr5_4:23525904-23525923 Msa0844900:intron 35.0%
ATGTGAATACACCAAATGGT+GGG + chr5_4:23525905-23525924 Msa0844900:intron 35.0%
!! ATTTTAGTAAAAGGGCAACC+CGG - chr5_4:23525971-23525990 None:intergenic 35.0%
!! GGAAGGTTTTGGTATGAAAA+TGG + chr5_4:23526004-23526023 Msa0844900:intron 35.0%
!! ATGAGTTGATGCCAGAAAAA+AGG + chr5_4:23526120-23526139 Msa0844900:CDS 35.0%
!! TGAGTTGATGCCAGAAAAAA+GGG + chr5_4:23526121-23526140 Msa0844900:CDS 35.0%
! TGTATTTTCCCCCTTTTTTC+TGG - chr5_4:23526134-23526153 None:intergenic 35.0%
AGAAAAAAGGGGGAAAATAC+AGG + chr5_4:23526133-23526152 Msa0844900:CDS 35.0%
! TTATCTGTTGTTTGTTGGTG+TGG + chr5_4:23526254-23526273 Msa0844900:intron 35.0%
! TATCTGTTGTTTGTTGGTGT+GGG + chr5_4:23526255-23526274 Msa0844900:intron 35.0%
AGCAATGAGAAAAGAAACAG+AGG + chr5_4:23526467-23526486 Msa0844900:intron 35.0%
TAACTGTATAAATGCTGCAG+TGG + chr5_4:23526590-23526609 Msa0844900:intron 35.0%
ACTGTGCCTAGTATATTAAG+CGG + chr5_4:23526625-23526644 Msa0844900:intron 35.0%
TTTAAAAAACCGGAACAGAC+CGG + chr5_4:23526664-23526683 Msa0844900:intron 35.0%
AAACAGGTAGTCAGTTAAAC+CGG + chr5_4:23526743-23526762 Msa0844900:intron 35.0%
! CGGTTTAAACCAGTTTTTAC+GGG - chr5_4:23526775-23526794 None:intergenic 35.0%
AGACAATGCTCTAGTATGAA+AGG + chr5_4:23526831-23526850 Msa0844900:intron 35.0%
! TATCCATTTCAACCCGATTT+TGG + chr5_4:23527032-23527051 Msa0844900:intron 35.0%
! ATCCATTTCAACCCGATTTT+GGG + chr5_4:23527033-23527052 Msa0844900:intron 35.0%
TGTGAGTAAGAAGAAGAGAA+TGG - chr5_4:23527107-23527126 None:intergenic 35.0%
TTCTCTTCTTCTTACTCACA+TGG + chr5_4:23527107-23527126 Msa0844900:intron 35.0%
AGTTCAAAGAAATTCCACAC+GGG + chr5_4:23527208-23527227 Msa0844900:intron 35.0%
AAGAAATCACATACTGAGCT+TGG - chr5_4:23527435-23527454 None:intergenic 35.0%
TACGAGTTTGTGAAATTGGT+AGG + chr5_4:23527650-23527669 Msa0844900:intron 35.0%
CTCAGATATGGTAACTATGA+TGG - chr5_4:23527818-23527837 None:intergenic 35.0%
CAATAGAATAGATACGGAGT+CGG + chr5_4:23527868-23527887 Msa0844900:intron 35.0%
CTGGTAAATTTAATCTCCAC+AGG - chr5_4:23528164-23528183 None:intergenic 35.0%
GTGGAGATTAAATTTACCAG+CGG + chr5_4:23528164-23528183 Msa0844900:intron 35.0%
!!! TTGGACGATCATTCCTTTTT+TGG + chr5_4:23528248-23528267 Msa0844900:intron 35.0%
!!! TCATTCCTTTTTTGGTGTGT+TGG + chr5_4:23528256-23528275 Msa0844900:intron 35.0%
TTGACACTTAATCAACCAGT+TGG - chr5_4:23528491-23528510 None:intergenic 35.0%
AATTCATAGCTGAACAAAGC+TGG - chr5_4:23528590-23528609 None:intergenic 35.0%
TGTGCAGTGTTATAATGAGA+TGG - chr5_4:23528643-23528662 None:intergenic 35.0%
!! TGATTTTATAGGCTGGTTAC+AGG + chr5_4:23528773-23528792 Msa0844900:intron 35.0%
TCAAGTCTATTCCATGTACA+GGG - chr5_4:23528833-23528852 None:intergenic 35.0%
ATCAAGTCTATTCCATGTAC+AGG - chr5_4:23528834-23528853 None:intergenic 35.0%
GACTTGATGCTTGAAATAAG+TGG + chr5_4:23528846-23528865 Msa0844900:intron 35.0%
! TATCTGTTGCTTCTTGTTGT+GGG + chr5_4:23528986-23529005 Msa0844900:intron 35.0%
TGTATTGAGCTTAGGGATTT+GGG - chr5_4:23529274-23529293 None:intergenic 35.0%
AAATCCCTAAGCTCAATACA+CGG + chr5_4:23529274-23529293 Msa0844900:intron 35.0%
CTCAGATATGGTAACTATGA+TGG - chr5_4:23527818-23527837 None:intergenic 35.0%
GAAGCTGAAAGAGAATATAC+TGG + chr5_4:23529455-23529474 Msa0844900:intron 35.0%
!!! TGGAGCCAAAATTTTCGAGT+TGG + chr5_4:23523096-23523115 Msa0844900:CDS 40.0%
!! TTCGAGTTGGTCATCGTAAA+TGG + chr5_4:23523109-23523128 Msa0844900:CDS 40.0%
AGAATGTGCCGTAACAGTAA+AGG - chr5_4:23523227-23523246 None:intergenic 40.0%
AAACTCGTACGAGTTTACTG+AGG + chr5_4:23523540-23523559 Msa0844900:intron 40.0%
! TTGGAGGTAAACTTGGTTTG+TGG - chr5_4:23523606-23523625 None:intergenic 40.0%
! CCAAAAACGTGTTAACTTGG+AGG - chr5_4:23523622-23523641 None:intergenic 40.0%
! CCTCCAAGTTAACACGTTTT+TGG + chr5_4:23523619-23523638 Msa0844900:intron 40.0%
! ATTTGTTACCTGAGCATCAG+TGG - chr5_4:23523807-23523826 None:intergenic 40.0%
! TCGTTGTAGTTGCTGTTGAA+AGG + chr5_4:23524024-23524043 Msa0844900:intron 40.0%
GAAAGGATCGATCAATTCTG+GGG + chr5_4:23524041-23524060 Msa0844900:CDS 40.0%
! AATTCTGGGGATCAACCTAA+AGG + chr5_4:23524054-23524073 Msa0844900:CDS 40.0%
! ATTTGTTACCTGAGCATCAG+TGG - chr5_4:23523807-23523826 None:intergenic 40.0%
GAATTTGTGCACGAGTTACA+AGG - chr5_4:23524207-23524226 None:intergenic 40.0%
!!! GACACACATTTTGAAACGGA+GGG - chr5_4:23524334-23524353 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG - chr5_4:23524563-23524582 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_4:23524588-23524607 Msa0844900:intron 40.0%
TCAATTCCATTAACCAGGAC+AGG - chr5_4:23524807-23524826 None:intergenic 40.0%
GGAAGGAAAGAAGAAATCTG+TGG + chr5_4:23524871-23524890 Msa0844900:intron 40.0%
!! GTTTTGTTGCATGCATTTGC+TGG + chr5_4:23524983-23525002 Msa0844900:intron 40.0%
GACAATGAGAGAGAAAACAG+GGG + chr5_4:23525176-23525195 Msa0844900:intron 40.0%
CTTGGGTTTACTGAATCTAC+CGG + chr5_4:23525490-23525509 Msa0844900:intron 40.0%
CCAAATCTATGTGGTATAGG+AGG - chr5_4:23525730-23525749 None:intergenic 40.0%
CCTCCTATACCACATAGATT+TGG + chr5_4:23525727-23525746 Msa0844900:intron 40.0%
TGTGAATACACCAAATGGTG+GGG + chr5_4:23525906-23525925 Msa0844900:intron 40.0%
! TATGTATGCACGGAAGGTTT+TGG + chr5_4:23525993-23526012 Msa0844900:intron 40.0%
!! GAGTTGATGCCAGAAAAAAG+GGG + chr5_4:23526122-23526141 Msa0844900:CDS 40.0%
! AGTTGATGCCAGAAAAAAGG+GGG + chr5_4:23526123-23526142 Msa0844900:CDS 40.0%
CTGTGCCTAGTATATTAAGC+GGG + chr5_4:23526626-23526645 Msa0844900:intron 40.0%
GAGTACCCGCTTAATATACT+AGG - chr5_4:23526634-23526653 None:intergenic 40.0%
TTAAACAATCCGGTCTGTTC+CGG - chr5_4:23526676-23526695 None:intergenic 40.0%
AACAGACCGGATTGTTTAAC+CGG + chr5_4:23526677-23526696 Msa0844900:intron 40.0%
! ACCTGTTTTGTACAGATGTC+CGG - chr5_4:23526731-23526750 None:intergenic 40.0%
!! CAGTTTTTACGGGCTTTTTC+CGG - chr5_4:23526765-23526784 None:intergenic 40.0%
TAAACCCTGTCACGTTAGTA+CGG - chr5_4:23526805-23526824 None:intergenic 40.0%
ATGAAAGGAGAATGCTCCTT+TGG + chr5_4:23526846-23526865 Msa0844900:intron 40.0%
TGAAAGGAGAATGCTCCTTT+GGG + chr5_4:23526847-23526866 Msa0844900:intron 40.0%
AAGATGATACCTTGCACACA+AGG - chr5_4:23526878-23526897 None:intergenic 40.0%
!! TTCCCAAAATCGGGTTGAAA+TGG - chr5_4:23527038-23527057 None:intergenic 40.0%
AGAAGAGAATGGATGTGCAT+TGG - chr5_4:23527096-23527115 None:intergenic 40.0%
! GGTTTGCTTGGTGGTTTATT+AGG - chr5_4:23527135-23527154 None:intergenic 40.0%
ATAAACCACCAAGCAAACCT+TGG + chr5_4:23527136-23527155 Msa0844900:intron 40.0%
CCTAATGGTACCTGTTTAGA+GGG - chr5_4:23527256-23527275 None:intergenic 40.0%
CAATTATTCTGCTACTGCCT+TGG + chr5_4:23527402-23527421 Msa0844900:intron 40.0%
AGTCACCAGATATGAGCTTT+GGG + chr5_4:23527468-23527487 Msa0844900:intron 40.0%
CAATAGTGACGACTCAGATA+TGG - chr5_4:23527830-23527849 None:intergenic 40.0%
CGACTCCGTATCTATTCTAT+TGG - chr5_4:23527870-23527889 None:intergenic 40.0%
TCCTCCATAAAATCAGAAGC+TGG + chr5_4:23527910-23527929 Msa0844900:intron 40.0%
! CATGCCAGCTTCTGATTTTA+TGG - chr5_4:23527917-23527936 None:intergenic 40.0%
GATATGTATCGTCCTGTATC+CGG - chr5_4:23528096-23528115 None:intergenic 40.0%
!!! CTTTTTTGGTGTGTTGGTGA+GGG + chr5_4:23528262-23528281 Msa0844900:intron 40.0%
TAGCTGAACAAAGCTGGATT+TGG - chr5_4:23528584-23528603 None:intergenic 40.0%
AATCAAAGGCTTGCACAATG+AGG - chr5_4:23528620-23528639 None:intergenic 40.0%
GTTATTAAGCACCCTGTACA+TGG + chr5_4:23528819-23528838 Msa0844900:intron 40.0%
! CTATCTGTTGCTTCTTGTTG+TGG + chr5_4:23528985-23529004 Msa0844900:intron 40.0%
! TTGCATGATAGTTTGTAGCC+TGG + chr5_4:23529091-23529110 Msa0844900:intron 40.0%
GTGTATTGAGCTTAGGGATT+TGG - chr5_4:23529275-23529294 None:intergenic 40.0%
CAACAGTGATGACTCAGATA+TGG - chr5_4:23529343-23529362 None:intergenic 40.0%
CTGAAAGAGAATATACTGGC+CGG + chr5_4:23529459-23529478 Msa0844900:CDS 40.0%
! TTTGGCTCCACTTATCGTCA+TGG - chr5_4:23523086-23523105 None:intergenic 45.0%
TGATTCCGCATCGTTCCTTT+AGG + chr5_4:23523189-23523208 Msa0844900:intron 45.0%
CGATACCTAAAGGAACGATG+CGG - chr5_4:23523197-23523216 None:intergenic 45.0%
GTCGCCATCCTTTACTGTTA+CGG + chr5_4:23523216-23523235 Msa0844900:CDS 45.0%
TGTGCCGTAACAGTAAAGGA+TGG - chr5_4:23523223-23523242 None:intergenic 45.0%
CATACACATGTACCTGTAGG+TGG - chr5_4:23523263-23523282 None:intergenic 45.0%
GAATCGGCATCTTCACCTTT+AGG - chr5_4:23524072-23524091 None:intergenic 45.0%
TACCTGAGCATCAGTGGAAT+CGG - chr5_4:23523801-23523820 None:intergenic 45.0%
AAATCTCCTCCCGCAAATGT+AGG + chr5_4:23524110-23524129 Msa0844900:intron 45.0%
AATCTCCTCCCGCAAATGTA+GGG + chr5_4:23524111-23524130 Msa0844900:intron 45.0%
ATTGACACCCCTACATTTGC+GGG - chr5_4:23524122-23524141 None:intergenic 45.0%
CATTGACACCCCTACATTTG+CGG - chr5_4:23524123-23524142 None:intergenic 45.0%
CAAGGAATAGAGAAAGCAGC+TGG - chr5_4:23524168-23524187 None:intergenic 45.0%
!!! CGACACACATTTTGAAACGG+AGG - chr5_4:23524335-23524354 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_4:23524587-23524606 Msa0844900:intron 45.0%
ATTGAACTGTGTTCCTGTCC+TGG + chr5_4:23524791-23524810 Msa0844900:intron 45.0%
TGTGTTCCTGTCCTGGTTAA+TGG + chr5_4:23524798-23524817 Msa0844900:intron 45.0%
ACATGGTGATACTCCTACAC+AGG + chr5_4:23524897-23524916 Msa0844900:intron 45.0%
GATACTCCTACACAGGTTTC+TGG + chr5_4:23524904-23524923 Msa0844900:intron 45.0%
CGAAATCCAGAAACCTGTGT+AGG - chr5_4:23524913-23524932 None:intergenic 45.0%
TTTACTGAATCTACCGGCAC+AGG + chr5_4:23525496-23525515 Msa0844900:intron 45.0%
AATACAGAGTAGTCCTGTGC+CGG - chr5_4:23525512-23525531 None:intergenic 45.0%
CTGGCATCAACTCATGTACA+GGG - chr5_4:23526115-23526134 None:intergenic 45.0%
TCTGGCATCAACTCATGTAC+AGG - chr5_4:23526116-23526135 None:intergenic 45.0%
! TTTTGTACAGATGTCCGGAC+CGG - chr5_4:23526726-23526745 None:intergenic 45.0%
TCCGGACATCTGTACAAAAC+AGG + chr5_4:23526727-23526746 Msa0844900:intron 45.0%
CGGAAAAAGCCCGTAAAAAC+TGG + chr5_4:23526763-23526782 Msa0844900:intron 45.0%
CTGTCACGTTAGTACGGTTT+CGG - chr5_4:23526799-23526818 None:intergenic 45.0%
GAAACCGTACTAACGTGACA+GGG + chr5_4:23526798-23526817 Msa0844900:intron 45.0%
TTCATTGCTGCAAGCCATGT+GGG - chr5_4:23527167-23527186 None:intergenic 45.0%
TTTCATTGCTGCAAGCCATG+TGG - chr5_4:23527168-23527187 None:intergenic 45.0%
CCCTCTAAACAGGTACCATT+AGG + chr5_4:23527253-23527272 Msa0844900:intron 45.0%
GCCTAATGGTACCTGTTTAG+AGG - chr5_4:23527257-23527276 None:intergenic 45.0%
CTGAGCTTGGAAGTTAACCA+AGG - chr5_4:23527422-23527441 None:intergenic 45.0%
CAGTCACCAGATATGAGCTT+TGG + chr5_4:23527467-23527486 Msa0844900:intron 45.0%
GTCACCAGATATGAGCTTTG+GGG + chr5_4:23527469-23527488 Msa0844900:intron 45.0%
! TCACCAGATATGAGCTTTGG+GGG + chr5_4:23527470-23527489 Msa0844900:intron 45.0%
!! ATGAGCTTTGGGGGAGTATT+AGG + chr5_4:23527479-23527498 Msa0844900:intron 45.0%
!! TGAGCTTTGGGGGAGTATTA+GGG + chr5_4:23527480-23527499 Msa0844900:intron 45.0%
CTTACTGAACCCACTTACAC+AGG + chr5_4:23527503-23527522 Msa0844900:intron 45.0%
CAACGAAGTCCTGTGTAAGT+GGG - chr5_4:23527515-23527534 None:intergenic 45.0%
ACAACGAAGTCCTGTGTAAG+TGG - chr5_4:23527516-23527535 None:intergenic 45.0%
AGGAAGGGATCATCGTGAAT+CGG - chr5_4:23527701-23527720 None:intergenic 45.0%
ATCCTACACAGGATCAGGAA+GGG - chr5_4:23527716-23527735 None:intergenic 45.0%
TCAAGATCCTACACAGGATC+AGG - chr5_4:23527721-23527740 None:intergenic 45.0%
AGTCAGTCAAGATCCTACAC+AGG - chr5_4:23527727-23527746 None:intergenic 45.0%
CAGCTGTGACTAACTCAAGA+TGG - chr5_4:23527771-23527790 None:intergenic 45.0%
CATCTTGAGTTAGTCACAGC+TGG + chr5_4:23527769-23527788 Msa0844900:intron 45.0%
TTGAGTTAGTCACAGCTGGA+TGG + chr5_4:23527773-23527792 Msa0844900:intron 45.0%
! GCCAGCTTCTGATTTTATGG+AGG - chr5_4:23527914-23527933 None:intergenic 45.0%
!! TGCTGGTCTTGGGATGAAAA+TGG + chr5_4:23528030-23528049 Msa0844900:intron 45.0%
TGATGTGATAGTCCGGATAC+AGG + chr5_4:23528081-23528100 Msa0844900:intron 45.0%
! ATGGAAAAGGCTCTAACCTG+TGG + chr5_4:23528145-23528164 Msa0844900:intron 45.0%
TGACAAACAACAAAAGCCGC+TGG - chr5_4:23528183-23528202 None:intergenic 45.0%
CCTCACCAACACACCAAAAA+AGG - chr5_4:23528264-23528283 None:intergenic 45.0%
!!! CCTTTTTTGGTGTGTTGGTG+AGG + chr5_4:23528261-23528280 Msa0844900:intron 45.0%
CAAGATCTTCAAGCACAGCA+AGG - chr5_4:23529019-23529038 None:intergenic 45.0%
! CTTGCTGTGCTTGAAGATCT+TGG + chr5_4:23529017-23529036 Msa0844900:intron 45.0%
CTAGCCGTGTATTGAGCTTA+GGG - chr5_4:23529281-23529300 None:intergenic 45.0%
TCTAGCCGTGTATTGAGCTT+AGG - chr5_4:23529282-23529301 None:intergenic 45.0%
AAGCTCAATACACGGCTAGA+TGG + chr5_4:23529282-23529301 Msa0844900:intron 45.0%
AAAGAGAATATACTGGCCGG+TGG + chr5_4:23529462-23529481 Msa0844900:CDS 45.0%
GTAAGAACTTTGACCTCCAC+CGG - chr5_4:23529481-23529500 None:intergenic 45.0%
!!! TAATACTTTTTTTTTTTTAA+TGG + chr5_4:23528691-23528710 Msa0844900:intron 5.0%
AGGATGGCGACGATACCTAA+AGG - chr5_4:23523207-23523226 None:intergenic 50.0%
ACACATGTACCTGTAGGTGG+CGG - chr5_4:23523260-23523279 None:intergenic 50.0%
!! TGCTGATTCCACTGATGCTC+AGG + chr5_4:23523796-23523815 Msa0844900:CDS 50.0%
ATCTCCTCCCGCAAATGTAG+GGG + chr5_4:23524112-23524131 Msa0844900:intron 50.0%
CACGTTAGTACGGTTTCGGA+CGG - chr5_4:23526795-23526814 None:intergenic 50.0%
CGAAACCGTACTAACGTGAC+AGG + chr5_4:23526797-23526816 Msa0844900:intron 50.0%
GCACACAAGGCTAAACCCAA+AGG - chr5_4:23526865-23526884 None:intergenic 50.0%
!! TGGGTTTAGCCTTGTGTGCA+AGG + chr5_4:23526866-23526885 Msa0844900:intron 50.0%
TCATTGCTGCAAGCCATGTG+GGG - chr5_4:23527166-23527185 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGACA+AGG - chr5_4:23527234-23527253 None:intergenic 50.0%
CTCTCTCTCTCCCTCTAAAC+AGG + chr5_4:23527243-23527262 Msa0844900:intron 50.0%
ACTCCCCCAAAGCTCATATC+TGG - chr5_4:23527476-23527495 None:intergenic 50.0%
TGAATCGGGGGATCGTAACA+CGG - chr5_4:23527686-23527705 None:intergenic 50.0%
AAGGGATCATCGTGAATCGG+GGG - chr5_4:23527698-23527717 None:intergenic 50.0%
GAAGGGATCATCGTGAATCG+GGG - chr5_4:23527699-23527718 None:intergenic 50.0%
GGAAGGGATCATCGTGAATC+GGG - chr5_4:23527700-23527719 None:intergenic 50.0%
ATCCCTTCCTGATCCTGTGT+AGG + chr5_4:23527711-23527730 Msa0844900:intron 50.0%
GATCCTACACAGGATCAGGA+AGG - chr5_4:23527717-23527736 None:intergenic 50.0%
GCTGAAAGAAGACTACGAGC+CGG + chr5_4:23528415-23528434 Msa0844900:CDS 50.0%
GTTGGTTACCTGAGCATCAG+CGG - chr5_4:23528473-23528492 None:intergenic 50.0%
CTGATGCTCAGGTAACCAAC+TGG + chr5_4:23528473-23528492 Msa0844900:intron 50.0%
!!! TGCATTTTGTGGTGGATGGG+GGG - chr5_4:23528515-23528534 None:intergenic 50.0%
!!! CTGCATTTTGTGGTGGATGG+GGG - chr5_4:23528516-23528535 None:intergenic 50.0%
!!! CCTGCATTTTGTGGTGGATG+GGG - chr5_4:23528517-23528536 None:intergenic 50.0%
!!! CCCTGCATTTTGTGGTGGAT+GGG - chr5_4:23528518-23528537 None:intergenic 50.0%
CCCATCCACCACAAAATGCA+GGG + chr5_4:23528515-23528534 Msa0844900:intron 50.0%
!! TCCCTGCATTTTGTGGTGGA+TGG - chr5_4:23528519-23528538 None:intergenic 50.0%
! GACATCCCTGCATTTTGTGG+TGG - chr5_4:23528523-23528542 None:intergenic 50.0%
! CGTGACATCCCTGCATTTTG+TGG - chr5_4:23528526-23528545 None:intergenic 50.0%
TGTCGCGCCATGACGATAAG+TGG + chr5_4:23523076-23523095 Msa0844900:exon 55.0%
!! CTGTAGGTGGCGGGTAACAT+TGG - chr5_4:23523250-23523269 None:intergenic 55.0%
CAATGTTACCCGCCACCTAC+AGG + chr5_4:23523248-23523267 Msa0844900:CDS 55.0%
CACATGTACCTGTAGGTGGC+GGG - chr5_4:23523259-23523278 None:intergenic 55.0%
! GCGCTGCAGTTGCTGTTGAA+TGG + chr5_4:23523728-23523747 Msa0844900:intron 55.0%
TCAGCCTGATCCACGGACTT+GGG - chr5_4:23523758-23523777 None:intergenic 55.0%
AAGTCCGTGGATCAGGCTGA+GGG + chr5_4:23523758-23523777 Msa0844900:intron 55.0%
!! TGCCGATTCCACTGATGCTC+AGG + chr5_4:23524083-23524102 Msa0844900:CDS 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr5_4:23525944-23525963 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr5_4:23525945-23525964 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr5_4:23525949-23525968 Msa0844900:intron 55.0%
GACCGGATTGTTTAACCGGC+TGG + chr5_4:23526681-23526700 Msa0844900:intron 55.0%
GGCCAGCCGGTTAAACAATC+CGG - chr5_4:23526686-23526705 None:intergenic 55.0%
GGATTGTTTAACCGGCTGGC+CGG + chr5_4:23526685-23526704 Msa0844900:intron 55.0%
! GTTGGCCAAGGTTTGCTTGG+TGG - chr5_4:23527144-23527163 None:intergenic 55.0%
AAACCTTGGCCAACCCCACA+TGG + chr5_4:23527150-23527169 Msa0844900:intron 55.0%
GAAAGAAGACTACGAGCCGG+TGG + chr5_4:23528418-23528437 Msa0844900:CDS 55.0%
AGCTCGACTATGTCCTCCAC+CGG - chr5_4:23528437-23528456 None:intergenic 55.0%
!! TGCTGATTCCGCTGATGCTC+AGG + chr5_4:23528462-23528481 Msa0844900:CDS 55.0%
!!! GCATTTTGTGGTGGATGGGG+GGG - chr5_4:23528514-23528533 None:intergenic 55.0%
CCCCATCCACCACAAAATGC+AGG + chr5_4:23528514-23528533 Msa0844900:intron 55.0%
GCAGGGATGTCACGATCTGT+TGG + chr5_4:23528532-23528551 Msa0844900:intron 55.0%
GAGAATATACTGGCCGGTGG+AGG + chr5_4:23529465-23529484 Msa0844900:CDS 55.0%
GAATGGATCGCCCAAGTCCG+TGG + chr5_4:23523745-23523764 Msa0844900:intron 60.0%
ATCGCCCAAGTCCGTGGATC+AGG + chr5_4:23523751-23523770 Msa0844900:intron 60.0%
CTCAGCCTGATCCACGGACT+TGG - chr5_4:23523759-23523778 None:intergenic 60.0%
CAAGTCCGTGGATCAGGCTG+AGG + chr5_4:23523757-23523776 Msa0844900:intron 60.0%
ACCACCCTCAGCCTGATCCA+CGG - chr5_4:23523765-23523784 None:intergenic 60.0%
GACACCCCTACATTTGCGGG+AGG - chr5_4:23524119-23524138 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr5_4:23525950-23525969 Msa0844900:intron 60.0%
! TAACCGGCTGGCCGGTAATC+CGG + chr5_4:23526693-23526712 Msa0844900:intron 60.0%
CCGGAAACAGCCCGGATTAC+CGG - chr5_4:23526707-23526726 None:intergenic 60.0%
! CCGGTAATCCGGGCTGTTTC+CGG + chr5_4:23526704-23526723 Msa0844900:intron 60.0%
! AATCCGGGCTGTTTCCGGTC+CGG + chr5_4:23526709-23526728 Msa0844900:intron 60.0%
!! GGGGTTGGCCAAGGTTTGCT+TGG - chr5_4:23527147-23527166 None:intergenic 60.0%
!! AAGCCATGTGGGGTTGGCCA+AGG - chr5_4:23527156-23527175 None:intergenic 60.0%
TGCTGCAAGCCATGTGGGGT+TGG - chr5_4:23527162-23527181 None:intergenic 60.0%
AGAGAGAGACAAGGCCCGTG+TGG - chr5_4:23527225-23527244 None:intergenic 60.0%
AGAAGACTACGAGCCGGTGG+AGG + chr5_4:23528421-23528440 Msa0844900:CDS 60.0%
TCCGTGGATCAGGCTGAGGG+TGG + chr5_4:23523761-23523780 Msa0844900:intron 65.0%
! CAAATGGTGGGGCCCCTTCC+CGG + chr5_4:23525917-23525936 Msa0844900:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr5_4:23525932-23525951 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr5_4:23525933-23525952 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr5_4:23525932-23525951 Msa0844900:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr5_4:23525933-23525952 Msa0844900:intron 65.0%
! AACCGGCTGGCCGGTAATCC+GGG + chr5_4:23526694-23526713 Msa0844900:intron 65.0%
TGTCCGGACCGGAAACAGCC+CGG - chr5_4:23526715-23526734 None:intergenic 65.0%
CGGGAAGGGGCCCCACCATT+TGG - chr5_4:23525919-23525938 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr5_4:23525934-23525953 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr5_4:23525938-23525957 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr5_4:23525939-23525958 None:intergenic 70.0%
AGCCCGGATTACCGGCCAGC+CGG - chr5_4:23526699-23526718 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23523007 23529503 23523007 ID=Msa0844900;Name=Msa0844900
chr5_4 mRNA 23523007 23529503 23523007 ID=Msa0844900-mRNA-1;Parent=Msa0844900;Name=Msa0844900-mRNA-1;_AED=0.23;_eAED=0.23;_QI=78|0.71|0.75|1|1|1|8|0|161
chr5_4 exon 23523007 23523136 23523007 ID=Msa0844900-mRNA-1:exon:9608;Parent=Msa0844900-mRNA-1
chr5_4 exon 23523211 23523269 23523211 ID=Msa0844900-mRNA-1:exon:9609;Parent=Msa0844900-mRNA-1
chr5_4 exon 23523773 23523817 23523773 ID=Msa0844900-mRNA-1:exon:9610;Parent=Msa0844900-mRNA-1
chr5_4 exon 23524033 23524104 23524033 ID=Msa0844900-mRNA-1:exon:9611;Parent=Msa0844900-mRNA-1
chr5_4 exon 23524919 23524978 23524919 ID=Msa0844900-mRNA-1:exon:9612;Parent=Msa0844900-mRNA-1
chr5_4 exon 23526077 23526154 23526077 ID=Msa0844900-mRNA-1:exon:9613;Parent=Msa0844900-mRNA-1
chr5_4 exon 23528412 23528483 23528412 ID=Msa0844900-mRNA-1:exon:9614;Parent=Msa0844900-mRNA-1
chr5_4 exon 23529456 23529503 23529456 ID=Msa0844900-mRNA-1:exon:9615;Parent=Msa0844900-mRNA-1
chr5_4 five_prime_UTR 23523007 23523084 23523007 ID=Msa0844900-mRNA-1:five_prime_utr;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23523085 23523136 23523085 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23523211 23523269 23523211 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23523773 23523817 23523773 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23524033 23524104 23524033 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23524919 23524978 23524919 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23526077 23526154 23526077 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23528412 23528483 23528412 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
chr5_4 CDS 23529456 23529503 23529456 ID=Msa0844900-mRNA-1:cds;Parent=Msa0844900-mRNA-1
Gene Sequence

>Msa0844900

ATGACGATAAGTGGAGCCAAAATTTTCGAGTTGGTCATCGTAAATGGAATAGGTATCGTCGCCATCCTTTACTGTTACGGCACATTCTCCAATGTTACCCGCCACCTACAGGCTGAGGGTGGTGAAGAAGAAGATGCTGATTCCACTGATGCTCAGTTGCTGTTGAAAGGATCGATCAATTCTGGGGATCAACCTAAAGGTGAAGATGCCGATTCCACTGATGCTCAGGTTTCTGGATTTCGAAGTGCTATTGCTATGGGTAACTCGCAACAAAAAGTGAATAGATTGGACAATGCAAATCATTCAACAAGGGTTATCAAGAACCCTGTACATGAGTTGATGCCAGAAAAAAGGGGGAAAATACAGAAAGCTGAAAGAAGACTACGAGCCGGTGGAGGACATAGTCGAGCTGAAGATGCTGATTCCGCTGATGCTCAGAAGCTGAAAGAGAATATACTGGCCGGTGGAGGTCAAAGTTCTTACTGA

Protein sequence

>Msa0844900

MTISGAKIFELVIVNGIGIVAILYCYGTFSNVTRHLQAEGGEEEDADSTDAQLLLKGSINSGDQPKGEDADSTDAQVSGFRSAIAMGNSQQKVNRLDNANHSTRVIKNPVHELMPEKRGKIQKAERRLRAGGGHSRAEDADSADAQKLKENILAGGGQSSY*