AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465680 MtrunA17_Chr3g0118181 100.000 90 0 0 1 90 1 90 2.03e-63 186
Msa0465680 MtrunA17_Chr3g0122981 69.318 88 27 0 1 88 1 88 1.31e-43 136
Msa0465680 MtrunA17_Chr7g0219981 51.220 82 40 0 5 86 3 84 2.74e-29 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465680 AT3G48140.1 74.118 85 22 0 4 88 3 87 1.32e-44 139
Msa0465680 AT3G29970.1 51.220 82 40 0 5 86 3 84 8.38e-30 101
Msa0465680 AT3G29970.2 47.059 68 36 0 18 85 1 68 2.33e-20 77.4
Msa0465680 AT3G29970.3 47.059 68 36 0 18 85 1 68 2.33e-20 77.4

Find 54 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATTATTGTCATGCATTT+AGG 0.207950 3_3:+66129970 Msa0465680:three_prime_UTR
CCGCATAGATGCAATGTTAT+TGG 0.285948 3_3:-66128477 None:intergenic
AAGTCGCAACTAAGTTGTTT+TGG 0.340325 3_3:+66129890 Msa0465680:exon
AAACATCAGTACCTGACTTC+AGG 0.347160 3_3:-66128858 None:intergenic
CCACAGCATACACGCTGTTC+AGG 0.369876 3_3:-66130019 None:intergenic
AAAGTTACTTCTAGGGAAAC+TGG 0.375628 3_3:+66130155 Msa0465680:three_prime_UTR
CAACAATTAACGCAACAAAC+AGG 0.381334 3_3:-66130058 None:intergenic
CTCTTCAACCTTGATGATCT+AGG 0.393617 3_3:-66130120 None:intergenic
TACCCTCTGTTTGCTGCGGT+TGG 0.396092 3_3:+66128783 Msa0465680:CDS
AGTTTATTTATTCTTACAAA+TGG 0.404953 3_3:-66128519 None:intergenic
CTGCGGTTGGAGCTGCTGTT+GGG 0.406881 3_3:+66128796 Msa0465680:CDS
GCTGCGGTTGGAGCTGCTGT+TGG 0.426937 3_3:+66128795 Msa0465680:CDS
TATAAATTTGTTCGGTGTGC+CGG 0.440486 3_3:+66130090 Msa0465680:three_prime_UTR
GCAGACATGCTTGTTAAAAC+TGG 0.453798 3_3:+66130214 Msa0465680:three_prime_UTR
GTTGAGGCCGGGCATAATCT+CGG 0.455438 3_3:-66129850 None:intergenic
AACATCAGTACCTGACTTCA+GGG 0.462667 3_3:-66128857 None:intergenic
AACAAGCAGTCTCGAGCTGC+AGG 0.464020 3_3:+66129753 Msa0465680:CDS
AGTGAAGAAGCTGTTGAGGC+CGG 0.469984 3_3:-66129862 None:intergenic
TCTTCTTCAACTGCTATCCA+TGG 0.475644 3_3:+66128646 Msa0465680:exon
ATAAATTTGTGATGTTGTCT+AGG 0.477019 3_3:+66130186 Msa0465680:three_prime_UTR
GATGCAATGTTATTGGTCAT+TGG 0.477084 3_3:-66128470 None:intergenic
TTTCAACAAAGTTACTTCTA+GGG 0.478418 3_3:+66130148 Msa0465680:three_prime_UTR
AACTTGCTTACTTGTCCGTA+TGG 0.481659 3_3:-66128439 None:intergenic
TTGAGGCCGGGCATAATCTC+GGG 0.481836 3_3:-66129849 None:intergenic
GTCTCGAGCTGCAGGAGTGT+TGG 0.483795 3_3:+66129761 Msa0465680:CDS
GATTGCAATTTGCAATGGAA+TGG 0.501934 3_3:-66128587 None:intergenic
AATTTGCAATGGAATGGAAA+TGG 0.511319 3_3:-66128581 None:intergenic
GGGTCTGATCCAGCGATTGG+TGG 0.513757 3_3:-66128669 None:intergenic
TTCTGTGTACTTCTCTCCCT+CGG 0.519035 3_3:-66129793 None:intergenic
CTCGGGTCTGATCCAGCGAT+TGG 0.519677 3_3:-66128672 None:intergenic
GTGAAGAAGCTGTTGAGGCC+GGG 0.521542 3_3:-66129861 None:intergenic
TATCCATGGCCACCAATCGC+TGG 0.522115 3_3:+66128660 Msa0465680:exon
AAAACAACTTAGTTGCGACT+TGG 0.523588 3_3:-66129888 None:intergenic
TCTGCATCAACCCTGAAGTC+AGG 0.524860 3_3:+66128847 Msa0465680:CDS
TCTCTGAGAGAGAAAGAGAA+TGG 0.528506 3_3:-66128558 None:intergenic
AAACAACTTAGTTGCGACTT+GGG 0.529015 3_3:-66129887 None:intergenic
AAGATGATTGCAATTTGCAA+TGG 0.529414 3_3:-66128592 None:intergenic
AGATCACCCGAGATTATGCC+CGG 0.535231 3_3:+66129843 Msa0465680:CDS
GATGTTACGAACAAGTGAAA+AGG 0.535731 3_3:-66128826 None:intergenic
TGATGATCTAGGTTCGATAC+CGG 0.576141 3_3:-66130109 None:intergenic
GATCCAGCGATTGGTGGCCA+TGG 0.584846 3_3:-66128663 None:intergenic
CGCGGGTATCACTATCCATA+CGG 0.587673 3_3:+66128424 Msa0465680:five_prime_UTR
CTCCAACCGCAGCAAACAGA+GGG 0.612181 3_3:-66128785 None:intergenic
GTGTTGGAGAACTTTGCCGA+GGG 0.614956 3_3:+66129777 Msa0465680:CDS
AACAATTAACGCAACAAACA+GGG 0.625184 3_3:-66130057 None:intergenic
GGTATACCCTCTGTTTGCTG+CGG 0.632424 3_3:+66128779 Msa0465680:intron
CCTGAACAGCGTGTATGCTG+TGG 0.641592 3_3:+66130019 Msa0465680:three_prime_UTR
AGTGTTGGAGAACTTTGCCG+AGG 0.642190 3_3:+66129776 Msa0465680:CDS
GGTCAGTGAAGAAGCTGTTG+AGG 0.648101 3_3:-66129866 None:intergenic
GCTCCAACCGCAGCAAACAG+AGG 0.651727 3_3:-66128786 None:intergenic
GTATCGAACCTAGATCATCA+AGG 0.676860 3_3:+66130112 Msa0465680:three_prime_UTR
CCAATAACATTGCATCTATG+CGG 0.692843 3_3:+66128477 Msa0465680:five_prime_UTR
CAATCGCTGGATCAGACCCG+AGG 0.698764 3_3:+66128673 Msa0465680:CDS
AGTACACAGAACATTTGCTG+AGG 0.706764 3_3:+66129805 Msa0465680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATTAACAAAATTTAA+TGG + chr3_3:66129096-66129115 Msa0465680:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG + chr3_3:66129097-66129116 Msa0465680:intron 10.0%
!!! ATAAAAATTTTCATTTTCAA+TGG - chr3_3:66129625-66129644 None:intergenic 10.0%
!! TAGATATTAACAAAATTTAA+TGG + chr3_3:66129096-66129115 Msa0465680:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG + chr3_3:66129097-66129116 Msa0465680:intron 10.0%
!!! ATAAAAATTTTCATTTTCAA+TGG - chr3_3:66129625-66129644 None:intergenic 10.0%
!! AGTTTATTTATTCTTACAAA+TGG - chr3_3:66128522-66128541 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG + chr3_3:66129017-66129036 Msa0465680:intron 15.0%
!! TTAATCTCTAATATCAAATA+GGG - chr3_3:66129348-66129367 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG - chr3_3:66129349-66129368 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG + chr3_3:66129359-66129378 Msa0465680:intron 15.0%
!!! GAAAATGAAAATTTTTATCT+CGG + chr3_3:66129627-66129646 Msa0465680:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG + chr3_3:66130082-66130101 Msa0465680:three_prime_UTR 15.0%
!! AGTTTATTTATTCTTACAAA+TGG - chr3_3:66128522-66128541 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG + chr3_3:66129017-66129036 Msa0465680:intron 15.0%
!! TTAATCTCTAATATCAAATA+GGG - chr3_3:66129348-66129367 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG - chr3_3:66129349-66129368 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG + chr3_3:66129359-66129378 Msa0465680:intron 15.0%
!!! GAAAATGAAAATTTTTATCT+CGG + chr3_3:66129627-66129646 Msa0465680:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG + chr3_3:66130082-66130101 Msa0465680:three_prime_UTR 15.0%
!! AAGAAGATAACAAAAACAAA+GGG - chr3_3:66128621-66128640 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG - chr3_3:66128765-66128784 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG - chr3_3:66128986-66129005 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG - chr3_3:66129027-66129046 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG - chr3_3:66129073-66129092 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG - chr3_3:66129170-66129189 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG + chr3_3:66129170-66129189 Msa0465680:intron 20.0%
!!! TCCTAAAAATCACTTTTTTA+AGG - chr3_3:66129218-66129237 None:intergenic 20.0%
!!! GATTAATTTTTATTCATTGG+AGG + chr3_3:66129362-66129381 Msa0465680:intron 20.0%
!!! TTGTTGTTTAATTTTTAGCT+AGG + chr3_3:66129671-66129690 Msa0465680:intron 20.0%
!!! TTTAATTTTTAGCTAGGATT+TGG + chr3_3:66129677-66129696 Msa0465680:intron 20.0%
!! AAGAAGATAACAAAAACAAA+GGG - chr3_3:66128621-66128640 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG - chr3_3:66128765-66128784 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG - chr3_3:66128986-66129005 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG - chr3_3:66129027-66129046 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG - chr3_3:66129073-66129092 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG - chr3_3:66129170-66129189 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG + chr3_3:66129170-66129189 Msa0465680:intron 20.0%
!!! TCCTAAAAATCACTTTTTTA+AGG - chr3_3:66129218-66129237 None:intergenic 20.0%
!!! GATTAATTTTTATTCATTGG+AGG + chr3_3:66129362-66129381 Msa0465680:intron 20.0%
!!! TTGTTGTTTAATTTTTAGCT+AGG + chr3_3:66129671-66129690 Msa0465680:intron 20.0%
!!! TTTAATTTTTAGCTAGGATT+TGG + chr3_3:66129677-66129696 Msa0465680:intron 20.0%
! AGAAGATAACAAAAACAAAG+GGG - chr3_3:66128620-66128639 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG - chr3_3:66128622-66128641 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG + chr3_3:66128758-66128777 Msa0465680:intron 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG + chr3_3:66128912-66128931 Msa0465680:intron 25.0%
! ATTCCATCATGTTTACTAAT+CGG - chr3_3:66129001-66129020 None:intergenic 25.0%
!! GCCTTAAAAAAGTGATTTTT+AGG + chr3_3:66129214-66129233 Msa0465680:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG + chr3_3:66129319-66129338 Msa0465680:intron 25.0%
!! ATGTTTGTTTGTTCTTTTGA+TGG + chr3_3:66129720-66129739 Msa0465680:intron 25.0%
!! TGTTTGTTTGTTCTTTTGAT+GGG + chr3_3:66129721-66129740 Msa0465680:intron 25.0%
!!! TTGTTTTGGATTAATAACAG+TGG + chr3_3:66129904-66129923 Msa0465680:three_prime_UTR 25.0%
! AGTATTATTGTCATGCATTT+AGG + chr3_3:66129970-66129989 Msa0465680:three_prime_UTR 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG + chr3_3:66130147-66130166 Msa0465680:three_prime_UTR 25.0%
! TTTCAACAAAGTTACTTCTA+GGG + chr3_3:66130148-66130167 Msa0465680:three_prime_UTR 25.0%
! ATAAATTTGTGATGTTGTCT+AGG + chr3_3:66130186-66130205 Msa0465680:three_prime_UTR 25.0%
! AGAAGATAACAAAAACAAAG+GGG - chr3_3:66128620-66128639 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG - chr3_3:66128622-66128641 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG + chr3_3:66128758-66128777 Msa0465680:intron 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG + chr3_3:66128912-66128931 Msa0465680:intron 25.0%
! ATTCCATCATGTTTACTAAT+CGG - chr3_3:66129001-66129020 None:intergenic 25.0%
!! GCCTTAAAAAAGTGATTTTT+AGG + chr3_3:66129214-66129233 Msa0465680:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG + chr3_3:66129319-66129338 Msa0465680:intron 25.0%
!! ATGTTTGTTTGTTCTTTTGA+TGG + chr3_3:66129720-66129739 Msa0465680:intron 25.0%
!! TGTTTGTTTGTTCTTTTGAT+GGG + chr3_3:66129721-66129740 Msa0465680:intron 25.0%
!!! TTGTTTTGGATTAATAACAG+TGG + chr3_3:66129904-66129923 Msa0465680:three_prime_UTR 25.0%
! AGTATTATTGTCATGCATTT+AGG + chr3_3:66129970-66129989 Msa0465680:three_prime_UTR 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG + chr3_3:66130147-66130166 Msa0465680:three_prime_UTR 25.0%
! TTTCAACAAAGTTACTTCTA+GGG + chr3_3:66130148-66130167 Msa0465680:three_prime_UTR 25.0%
! ATAAATTTGTGATGTTGTCT+AGG + chr3_3:66130186-66130205 Msa0465680:three_prime_UTR 25.0%
AATTTGCAATGGAATGGAAA+TGG - chr3_3:66128584-66128603 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG - chr3_3:66128595-66128614 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG - chr3_3:66128724-66128743 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG + chr3_3:66128995-66129014 Msa0465680:intron 30.0%
CATCATATCATTTCTCAGAT+AGG - chr3_3:66129047-66129066 None:intergenic 30.0%
CAATCATCGGATTATTATCA+TGG - chr3_3:66129250-66129269 None:intergenic 30.0%
TGAGATATAACTCAAAAGAG+TGG + chr3_3:66129438-66129457 Msa0465680:intron 30.0%
! TTTTTATCTCGGTTTTACAC+AGG + chr3_3:66129638-66129657 Msa0465680:intron 30.0%
! TTTTATCTCGGTTTTACACA+GGG + chr3_3:66129639-66129658 Msa0465680:intron 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG + chr3_3:66129727-66129746 Msa0465680:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG + chr3_3:66129728-66129747 Msa0465680:intron 30.0%
AACAATTAACGCAACAAACA+GGG - chr3_3:66130060-66130079 None:intergenic 30.0%
AATTTGCAATGGAATGGAAA+TGG - chr3_3:66128584-66128603 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG - chr3_3:66128595-66128614 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG - chr3_3:66128724-66128743 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG + chr3_3:66128995-66129014 Msa0465680:intron 30.0%
CATCATATCATTTCTCAGAT+AGG - chr3_3:66129047-66129066 None:intergenic 30.0%
CAATCATCGGATTATTATCA+TGG - chr3_3:66129250-66129269 None:intergenic 30.0%
TGAGATATAACTCAAAAGAG+TGG + chr3_3:66129438-66129457 Msa0465680:intron 30.0%
! TTTTTATCTCGGTTTTACAC+AGG + chr3_3:66129638-66129657 Msa0465680:intron 30.0%
! TTTTATCTCGGTTTTACACA+GGG + chr3_3:66129639-66129658 Msa0465680:intron 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG + chr3_3:66129727-66129746 Msa0465680:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG + chr3_3:66129728-66129747 Msa0465680:intron 30.0%
AACAATTAACGCAACAAACA+GGG - chr3_3:66130060-66130079 None:intergenic 30.0%
GATGCAATGTTATTGGTCAT+TGG - chr3_3:66128473-66128492 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG + chr3_3:66128477-66128496 Msa0465680:five_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG - chr3_3:66128590-66128609 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG - chr3_3:66128704-66128723 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG + chr3_3:66128733-66128752 Msa0465680:intron 35.0%
TGCATTTCGTAAGAGAGTTA+GGG + chr3_3:66128734-66128753 Msa0465680:intron 35.0%
GATGTTACGAACAAGTGAAA+AGG - chr3_3:66128829-66128848 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG + chr3_3:66128934-66128953 Msa0465680:intron 35.0%
ACTCATGTATCTGGACTAAA+TGG + chr3_3:66129179-66129198 Msa0465680:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG - chr3_3:66129263-66129282 None:intergenic 35.0%
! CGAATTTTGCACAAATAACG+TGG + chr3_3:66129296-66129315 Msa0465680:intron 35.0%
TTTGCACAAATAACGTGGAA+TGG + chr3_3:66129301-66129320 Msa0465680:intron 35.0%
AAATCCATGATATGTTTGCC+TGG + chr3_3:66129528-66129547 Msa0465680:intron 35.0%
! TGGTGTTTGAAGGAGTATAA+TGG + chr3_3:66129697-66129716 Msa0465680:intron 35.0%
AAACAACTTAGTTGCGACTT+GGG - chr3_3:66129890-66129909 None:intergenic 35.0%
AAAACAACTTAGTTGCGACT+TGG - chr3_3:66129891-66129910 None:intergenic 35.0%
! AAGTCGCAACTAAGTTGTTT+TGG + chr3_3:66129890-66129909 Msa0465680:exon 35.0%
CAACAATTAACGCAACAAAC+AGG - chr3_3:66130061-66130080 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG + chr3_3:66130090-66130109 Msa0465680:three_prime_UTR 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG + chr3_3:66130155-66130174 Msa0465680:three_prime_UTR 35.0%
GATGCAATGTTATTGGTCAT+TGG - chr3_3:66128473-66128492 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG + chr3_3:66128477-66128496 Msa0465680:five_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG - chr3_3:66128590-66128609 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG - chr3_3:66128704-66128723 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG + chr3_3:66128733-66128752 Msa0465680:intron 35.0%
TGCATTTCGTAAGAGAGTTA+GGG + chr3_3:66128734-66128753 Msa0465680:intron 35.0%
GATGTTACGAACAAGTGAAA+AGG - chr3_3:66128829-66128848 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG + chr3_3:66128934-66128953 Msa0465680:intron 35.0%
ACTCATGTATCTGGACTAAA+TGG + chr3_3:66129179-66129198 Msa0465680:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG - chr3_3:66129263-66129282 None:intergenic 35.0%
! CGAATTTTGCACAAATAACG+TGG + chr3_3:66129296-66129315 Msa0465680:intron 35.0%
TTTGCACAAATAACGTGGAA+TGG + chr3_3:66129301-66129320 Msa0465680:intron 35.0%
AAATCCATGATATGTTTGCC+TGG + chr3_3:66129528-66129547 Msa0465680:intron 35.0%
! TGGTGTTTGAAGGAGTATAA+TGG + chr3_3:66129697-66129716 Msa0465680:intron 35.0%
AAACAACTTAGTTGCGACTT+GGG - chr3_3:66129890-66129909 None:intergenic 35.0%
AAAACAACTTAGTTGCGACT+TGG - chr3_3:66129891-66129910 None:intergenic 35.0%
! AAGTCGCAACTAAGTTGTTT+TGG + chr3_3:66129890-66129909 Msa0465680:exon 35.0%
CAACAATTAACGCAACAAAC+AGG - chr3_3:66130061-66130080 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG + chr3_3:66130090-66130109 Msa0465680:three_prime_UTR 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG + chr3_3:66130155-66130174 Msa0465680:three_prime_UTR 35.0%
! AACTTGCTTACTTGTCCGTA+TGG - chr3_3:66128442-66128461 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG - chr3_3:66128480-66128499 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG - chr3_3:66128561-66128580 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG + chr3_3:66128646-66128665 Msa0465680:exon 40.0%
AACATCAGTACCTGACTTCA+GGG - chr3_3:66128860-66128879 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG - chr3_3:66128861-66128880 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG - chr3_3:66129138-66129157 None:intergenic 40.0%
AACTCAAAAGAGTGGCATCA+TGG + chr3_3:66129446-66129465 Msa0465680:intron 40.0%
TCAACCAGGCAAACATATCA+TGG - chr3_3:66129535-66129554 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG + chr3_3:66129547-66129566 Msa0465680:intron 40.0%
!! AGCTAGGATTTGGTGTTTGA+AGG + chr3_3:66129687-66129706 Msa0465680:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG + chr3_3:66129805-66129824 Msa0465680:CDS 40.0%
TGATGATCTAGGTTCGATAC+CGG - chr3_3:66130112-66130131 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG + chr3_3:66130112-66130131 Msa0465680:three_prime_UTR 40.0%
! CTCTTCAACCTTGATGATCT+AGG - chr3_3:66130123-66130142 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG + chr3_3:66130214-66130233 Msa0465680:three_prime_UTR 40.0%
! AACTTGCTTACTTGTCCGTA+TGG - chr3_3:66128442-66128461 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG - chr3_3:66128480-66128499 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG - chr3_3:66128561-66128580 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG + chr3_3:66128646-66128665 Msa0465680:exon 40.0%
AACATCAGTACCTGACTTCA+GGG - chr3_3:66128860-66128879 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG - chr3_3:66128861-66128880 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG - chr3_3:66129138-66129157 None:intergenic 40.0%
AACTCAAAAGAGTGGCATCA+TGG + chr3_3:66129446-66129465 Msa0465680:intron 40.0%
TCAACCAGGCAAACATATCA+TGG - chr3_3:66129535-66129554 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG + chr3_3:66129547-66129566 Msa0465680:intron 40.0%
!! AGCTAGGATTTGGTGTTTGA+AGG + chr3_3:66129687-66129706 Msa0465680:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG + chr3_3:66129805-66129824 Msa0465680:CDS 40.0%
TGATGATCTAGGTTCGATAC+CGG - chr3_3:66130112-66130131 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG + chr3_3:66130112-66130131 Msa0465680:three_prime_UTR 40.0%
! CTCTTCAACCTTGATGATCT+AGG - chr3_3:66130123-66130142 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG + chr3_3:66130214-66130233 Msa0465680:three_prime_UTR 40.0%
AGATCGAAAAGGACTCACCT+CGG - chr3_3:66128693-66128712 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG - chr3_3:66129549-66129568 None:intergenic 45.0%
TTCTGTGTACTTCTCTCCCT+CGG - chr3_3:66129796-66129815 None:intergenic 45.0%
AGATCGAAAAGGACTCACCT+CGG - chr3_3:66128693-66128712 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG - chr3_3:66129549-66129568 None:intergenic 45.0%
TTCTGTGTACTTCTCTCCCT+CGG - chr3_3:66129796-66129815 None:intergenic 45.0%
CGCGGGTATCACTATCCATA+CGG + chr3_3:66128424-66128443 Msa0465680:five_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG - chr3_3:66128692-66128711 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG + chr3_3:66128779-66128798 Msa0465680:intron 50.0%
TCTGCATCAACCCTGAAGTC+AGG + chr3_3:66128847-66128866 Msa0465680:CDS 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG + chr3_3:66129776-66129795 Msa0465680:CDS 50.0%
GTGTTGGAGAACTTTGCCGA+GGG + chr3_3:66129777-66129796 Msa0465680:CDS 50.0%
AGATCACCCGAGATTATGCC+CGG + chr3_3:66129843-66129862 Msa0465680:CDS 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG - chr3_3:66129865-66129884 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG - chr3_3:66129869-66129888 None:intergenic 50.0%
CGCGGGTATCACTATCCATA+CGG + chr3_3:66128424-66128443 Msa0465680:five_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG - chr3_3:66128692-66128711 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG + chr3_3:66128779-66128798 Msa0465680:intron 50.0%
TCTGCATCAACCCTGAAGTC+AGG + chr3_3:66128847-66128866 Msa0465680:CDS 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG + chr3_3:66129776-66129795 Msa0465680:CDS 50.0%
GTGTTGGAGAACTTTGCCGA+GGG + chr3_3:66129777-66129796 Msa0465680:CDS 50.0%
AGATCACCCGAGATTATGCC+CGG + chr3_3:66129843-66129862 Msa0465680:CDS 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG - chr3_3:66129865-66129884 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG - chr3_3:66129869-66129888 None:intergenic 50.0%
TATCCATGGCCACCAATCGC+TGG + chr3_3:66128660-66128679 Msa0465680:exon 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG + chr3_3:66128783-66128802 Msa0465680:CDS 55.0%
CTCCAACCGCAGCAAACAGA+GGG - chr3_3:66128788-66128807 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG + chr3_3:66129753-66129772 Msa0465680:CDS 55.0%
TTGAGGCCGGGCATAATCTC+GGG - chr3_3:66129852-66129871 None:intergenic 55.0%
GTTGAGGCCGGGCATAATCT+CGG - chr3_3:66129853-66129872 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG - chr3_3:66129864-66129883 None:intergenic 55.0%
CCACAGCATACACGCTGTTC+AGG - chr3_3:66130022-66130041 None:intergenic 55.0%
CCTGAACAGCGTGTATGCTG+TGG + chr3_3:66130019-66130038 Msa0465680:three_prime_UTR 55.0%
TATCCATGGCCACCAATCGC+TGG + chr3_3:66128660-66128679 Msa0465680:exon 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG + chr3_3:66128783-66128802 Msa0465680:CDS 55.0%
CTCCAACCGCAGCAAACAGA+GGG - chr3_3:66128788-66128807 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG + chr3_3:66129753-66129772 Msa0465680:CDS 55.0%
TTGAGGCCGGGCATAATCTC+GGG - chr3_3:66129852-66129871 None:intergenic 55.0%
GTTGAGGCCGGGCATAATCT+CGG - chr3_3:66129853-66129872 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG - chr3_3:66129864-66129883 None:intergenic 55.0%
CCACAGCATACACGCTGTTC+AGG - chr3_3:66130022-66130041 None:intergenic 55.0%
CCTGAACAGCGTGTATGCTG+TGG + chr3_3:66130019-66130038 Msa0465680:three_prime_UTR 55.0%
! GATCCAGCGATTGGTGGCCA+TGG - chr3_3:66128666-66128685 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG - chr3_3:66128672-66128691 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG - chr3_3:66128675-66128694 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG + chr3_3:66128673-66128692 Msa0465680:CDS 60.0%
GCTCCAACCGCAGCAAACAG+AGG - chr3_3:66128789-66128808 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG + chr3_3:66128796-66128815 Msa0465680:CDS 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG + chr3_3:66129761-66129780 Msa0465680:CDS 60.0%
! GATCCAGCGATTGGTGGCCA+TGG - chr3_3:66128666-66128685 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG - chr3_3:66128672-66128691 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG - chr3_3:66128675-66128694 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG + chr3_3:66128673-66128692 Msa0465680:CDS 60.0%
GCTCCAACCGCAGCAAACAG+AGG - chr3_3:66128789-66128808 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG + chr3_3:66128796-66128815 Msa0465680:CDS 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG + chr3_3:66129761-66129780 Msa0465680:CDS 60.0%
GCTGCGGTTGGAGCTGCTGT+TGG + chr3_3:66128795-66128814 Msa0465680:CDS 65.0%
GCTGCGGTTGGAGCTGCTGT+TGG + chr3_3:66128795-66128814 Msa0465680:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 66128411 66130325 66128411 ID=Msa0465680;Name=Msa0465680
chr3_3 mRNA 66128411 66130325 66128411 ID=Msa0465680-mRNA-1;Parent=Msa0465680;Name=Msa0465680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=254|1|1|1|1|1|3|423|90
chr3_3 exon 66128411 66128694 66128411 ID=Msa0465680-mRNA-1:exon:14883;Parent=Msa0465680-mRNA-1
chr3_3 exon 66128780 66128868 66128780 ID=Msa0465680-mRNA-1:exon:14884;Parent=Msa0465680-mRNA-1
chr3_3 exon 66129749 66130325 66129749 ID=Msa0465680-mRNA-1:exon:14885;Parent=Msa0465680-mRNA-1
chr3_3 five_prime_UTR 66128411 66128664 66128411 ID=Msa0465680-mRNA-1:five_prime_utr;Parent=Msa0465680-mRNA-1
chr3_3 CDS 66128665 66128694 66128665 ID=Msa0465680-mRNA-1:cds;Parent=Msa0465680-mRNA-1
chr3_3 CDS 66128780 66128868 66128780 ID=Msa0465680-mRNA-1:cds;Parent=Msa0465680-mRNA-1
chr3_3 CDS 66129749 66129902 66129749 ID=Msa0465680-mRNA-1:cds;Parent=Msa0465680-mRNA-1
chr3_3 three_prime_UTR 66129903 66130325 66129903 ID=Msa0465680-mRNA-1:three_prime_utr;Parent=Msa0465680-mRNA-1
Gene Sequence

>Msa0465680

ATGGCCACCAATCGCTGGATCAGACCCGAGGTATACCCTCTGTTTGCTGCGGTTGGAGCTGCTGTTGGGATCTGTGCCTTTTCACTTGTTCGTAACATCTGCATCAACCCTGAAGTCAGGGTGAACAAGCAGTCTCGAGCTGCAGGAGTGTTGGAGAACTTTGCCGAGGGAGAGAAGTACACAGAACATTTGCTGAGGAAGTTTTCACGCAACAGATCACCCGAGATTATGCCCGGCCTCAACAGCTTCTTCACTGACCCAAGTCGCAACTAA

Protein sequence

>Msa0465680

MATNRWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHLLRKFSRNRSPEIMPGLNSFFTDPSRN*