Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787810 | G7K4J5 | 91.213 | 569 | 32 | 2 | 1 | 556 | 1 | 564 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027580 | Msa0787810 | 0.807340 | 5.301259e-50 | -8.615850e-47 |
| Msa0073670 | Msa0787810 | 0.808506 | 2.996006e-50 | -8.615850e-47 |
| Msa0075340 | Msa0787810 | 0.808634 | 2.811929e-50 | -8.615850e-47 |
| Msa0639120 | Msa0787810 | 0.832010 | 1.206434e-55 | -8.615850e-47 |
| Msa0687630 | Msa0787810 | 0.822166 | 2.739912e-53 | -8.615850e-47 |
| Msa0706970 | Msa0787810 | 0.815636 | 8.352117e-52 | -8.615850e-47 |
| Msa0707390 | Msa0787810 | 0.835090 | 2.054659e-56 | -8.615850e-47 |
| Msa0740040 | Msa0787810 | 0.897694 | 1.096434e-76 | -8.615850e-47 |
| Msa0743800 | Msa0787810 | 0.812239 | 4.685998e-51 | -8.615850e-47 |
| Msa0750920 | Msa0787810 | 0.824370 | 8.374504e-54 | -8.615850e-47 |
| Msa0787750 | Msa0787810 | 0.807669 | 4.515696e-50 | -8.615850e-47 |
| Msa0787810 | Msa0797750 | 0.812400 | 4.321642e-51 | -8.615850e-47 |
| Msa0787810 | Msa0814250 | 0.816167 | 6.357760e-52 | -8.615850e-47 |
| Msa0787810 | Msa0814320 | 0.802618 | 5.149909e-49 | -8.615850e-47 |
| Msa0787810 | Msa0824540 | 0.814626 | 1.399817e-51 | -8.615850e-47 |
| Msa0787810 | Msa0824640 | 0.842582 | 2.367967e-58 | -8.615850e-47 |
| Msa0787810 | Msa0824730 | 0.825962 | 3.521240e-54 | -8.615850e-47 |
| Msa0787810 | Msa0824910 | 0.933502 | 1.702667e-95 | -8.615850e-47 |
| Msa0787810 | Msa0863970 | 0.891760 | 2.958273e-74 | -8.615850e-47 |
| Msa0787810 | Msa0864010 | 0.848771 | 4.956442e-60 | -8.615850e-47 |
| Msa0787810 | Msa0976330 | 0.825000 | 5.950192e-54 | -8.615850e-47 |
| Msa0787810 | Msa1082700 | 0.802041 | 6.771698e-49 | -8.615850e-47 |
| Msa0787810 | Msa1107440 | 0.813305 | 2.737487e-51 | -8.615850e-47 |
| Msa0787810 | Msa1150970 | 0.836722 | 7.923308e-57 | -8.615850e-47 |
| Msa0787810 | Msa1174100 | 0.819985 | 8.710989e-53 | -8.615850e-47 |
| Msa0787810 | Msa1184370 | 0.843892 | 1.059669e-58 | -8.615850e-47 |
| Msa0787810 | Msa1201830 | 0.838326 | 3.073291e-57 | -8.615850e-47 |
| Msa0787810 | Msa1227690 | 0.826278 | 2.962064e-54 | -8.615850e-47 |
| Msa0787810 | Msa1254710 | 0.805405 | 1.356476e-49 | -8.615850e-47 |
| Msa0787810 | Msa1294840 | 0.833047 | 6.672751e-56 | -8.615850e-47 |
| Msa0787810 | Msa1299360 | 0.820467 | 6.756128e-53 | -8.615850e-47 |
| Msa0787810 | Msa1307950 | 0.829554 | 4.824216e-55 | -8.615850e-47 |
| Msa0787810 | Msa1309130 | 0.804517 | 2.079420e-49 | -8.615850e-47 |
| Msa0787810 | Msa1310690 | 0.818615 | 1.787397e-52 | -8.615850e-47 |
| Msa0787810 | Msa1344850 | 0.840327 | 9.298743e-58 | -8.615850e-47 |
| Msa0787810 | Msa1365150 | 0.824987 | 5.993434e-54 | -8.615850e-47 |
| Msa0787810 | Msa1365200 | 0.815736 | 7.935266e-52 | -8.615850e-47 |
| Msa0787810 | Msa1367880 | 0.811135 | 8.144850e-51 | -8.615850e-47 |
| Msa0787810 | Msa1387190 | 0.820218 | 7.705594e-53 | -8.615850e-47 |
| Msa0787810 | Msa1404190 | 0.829184 | 5.932150e-55 | -8.615850e-47 |
| Msa0787810 | Msa1438640 | 0.840888 | 6.629114e-58 | -8.615850e-47 |
| Msa0787810 | Msa1442850 | 0.808298 | 3.316861e-50 | -8.615850e-47 |
| Msa0787810 | Msa1465080 | 0.838347 | 3.035995e-57 | -8.615850e-47 |
| Msa0787810 | Msa1466990 | 0.802305 | 5.975612e-49 | -8.615850e-47 |
| Msa0134130 | Msa0787810 | 0.803365 | 3.610326e-49 | -8.615850e-47 |
| Msa0199690 | Msa0787810 | 0.815471 | 9.089783e-52 | -8.615850e-47 |
| Msa0413450 | Msa0787810 | 0.818682 | 1.726021e-52 | -8.615850e-47 |
| Msa0469910 | Msa0787810 | -0.830391 | 3.015518e-55 | -8.615850e-47 |
| Msa0242680 | Msa0787810 | 0.802999 | 4.297997e-49 | -8.615850e-47 |
| Msa0259560 | Msa0787810 | 0.811749 | 5.991731e-51 | -8.615850e-47 |
| Msa0260240 | Msa0787810 | 0.800986 | 1.114276e-48 | -8.615850e-47 |
| Msa0260280 | Msa0787810 | 0.803819 | 2.905938e-49 | -8.615850e-47 |
| Msa0280430 | Msa0787810 | 0.806715 | 7.189114e-50 | -8.615850e-47 |
| Msa0291520 | Msa0787810 | 0.823440 | 1.383237e-53 | -8.615850e-47 |
| Msa0310410 | Msa0787810 | 0.806344 | 8.609058e-50 | -8.615850e-47 |
| Msa0505150 | Msa0787810 | 0.814774 | 1.298425e-51 | -8.615850e-47 |
| Msa0552810 | Msa0787810 | 0.809639 | 1.713426e-50 | -8.615850e-47 |
| Msa0560470 | Msa0787810 | 0.813275 | 2.779005e-51 | -8.615850e-47 |
| Msa0581070 | Msa0787810 | 0.801575 | 8.439640e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787810 | MtrunA17_Chr5g0445961 | 91.213 | 569 | 32 | 2 | 1 | 556 | 1 | 564 | 0.0 | 996 |
| Msa0787810 | MtrunA17_Chr5g0445861 | 47.596 | 416 | 139 | 9 | 1 | 392 | 1 | 361 | 1.83e-89 | 282 |
| Msa0787810 | MtrunA17_Chr5g0445771 | 38.177 | 406 | 145 | 7 | 3 | 404 | 1 | 304 | 8.98e-56 | 195 |
| Msa0787810 | MtrunA17_Chr5g0445831 | 37.284 | 405 | 180 | 11 | 1 | 382 | 1 | 354 | 4.77e-49 | 175 |
| Msa0787810 | MtrunA17_Chr5g0445881 | 45.714 | 175 | 75 | 2 | 252 | 406 | 127 | 301 | 6.20e-33 | 131 |
| Msa0787810 | MtrunA17_Chr5g0445881 | 35.207 | 338 | 162 | 10 | 1 | 329 | 1 | 290 | 2.27e-29 | 121 |
| Msa0787810 | MtrunA17_Chr5g0446181 | 42.920 | 226 | 102 | 6 | 1 | 216 | 1 | 209 | 8.98e-29 | 117 |
| Msa0787810 | MtrunA17_Chr5g0445811 | 37.872 | 235 | 94 | 5 | 167 | 382 | 42 | 243 | 1.94e-27 | 112 |
| Msa0787810 | MtrunA17_Chr5g0445811 | 30.667 | 300 | 131 | 9 | 1 | 294 | 1 | 229 | 7.61e-11 | 63.2 |
| Msa0787810 | MtrunA17_Chr5g0446171 | 35.196 | 179 | 82 | 4 | 1 | 176 | 1 | 148 | 3.61e-17 | 81.3 |
| Msa0787810 | MtrunA17_Chr1g0185261 | 41.481 | 135 | 55 | 4 | 255 | 389 | 65 | 175 | 2.62e-16 | 78.2 |
| Msa0787810 | MtrunA17_Chr5g0413371 | 35.152 | 165 | 85 | 2 | 35 | 199 | 1 | 143 | 1.27e-13 | 73.9 |
| Msa0787810 | MtrunA17_Chr5g0446231 | 38.462 | 130 | 63 | 3 | 40 | 166 | 1 | 116 | 2.95e-13 | 72.4 |
| Msa0787810 | MtrunA17_Chr5g0446191 | 38.168 | 131 | 64 | 3 | 39 | 166 | 15 | 131 | 1.12e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 127 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTAGTAACTTTATTT+TGG | 0.155616 | 5_2:-73878874 | Msa0787810:three_prime_UTR |
| AGTAATCAGTAACTTTATTT+TGG | 0.175697 | 5_2:-73878954 | Msa0787810:three_prime_UTR |
| GTCTCAACACTTCAAGTTCA+TGG | 0.265592 | 5_2:+73880747 | None:intergenic |
| GCTTAAATACTTACATTTGT+AGG | 0.271720 | 5_2:+73879398 | None:intergenic |
| GGAGAAACTCTTAAGGTTAA+AGG | 0.271874 | 5_2:-73880984 | Msa0787810:CDS |
| TGAAACAGTAAACAAGAATT+TGG | 0.280388 | 5_2:-73880276 | Msa0787810:CDS |
| GCATGCATGGACCAATCTTT+TGG | 0.292810 | 5_2:+73879065 | None:intergenic |
| ATTTAAGCTCATCAATAGTT+TGG | 0.295375 | 5_2:+73880121 | None:intergenic |
| GACTGGTGAGATGGATAATA+AGG | 0.296831 | 5_2:-73880384 | Msa0787810:CDS |
| AGTTGAAGTGTGAGGTTAAT+AGG | 0.300952 | 5_2:-73880460 | Msa0787810:CDS |
| AGTTGGAGTGTGAGGTTAAT+AGG | 0.300952 | 5_2:-73880628 | Msa0787810:CDS |
| AATTGTTAGTAACTTTGTTT+TGG | 0.311899 | 5_2:-73878796 | Msa0787810:three_prime_UTR |
| TTAATAAGTTGAAGGAAGAT+AGG | 0.328036 | 5_2:-73880529 | Msa0787810:CDS |
| TGAGATGGATAATAAGGTTT+TGG | 0.330950 | 5_2:-73880378 | Msa0787810:CDS |
| GTCAAAATCATTACATGTTA+AGG | 0.357681 | 5_2:-73879293 | Msa0787810:CDS |
| AGCAATACTTGAACAAGATC+TGG | 0.362926 | 5_2:+73881133 | None:intergenic |
| GGAAGATAGGGTGGAGGATG+GGG | 0.372981 | 5_2:-73880516 | Msa0787810:CDS |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.376137 | 5_2:+73879163 | None:intergenic |
| GTCCATGCATGCAGGCAATT+AGG | 0.379329 | 5_2:-73879054 | Msa0787810:three_prime_UTR |
| GGAAAGACAACAACTTGAAA+TGG | 0.380275 | 5_2:-73881005 | Msa0787810:CDS |
| TGAAAGAGTTGAAGGTGTTT+TGG | 0.381818 | 5_2:-73881086 | Msa0787810:CDS |
| GGTTGAAGTGTGAGGTTGAC+AGG | 0.395371 | 5_2:-73880796 | Msa0787810:CDS |
| CTTAGAGCAGAATGTTGAAA+TGG | 0.410048 | 5_2:-73881026 | Msa0787810:CDS |
| ATACTTACATTTGTAGGATC+AGG | 0.410411 | 5_2:+73879404 | None:intergenic |
| GATAACAATACCACAATAGA+TGG | 0.410818 | 5_2:+73878906 | None:intergenic |
| TGTAGCACCTTCTGCAAGTC+AGG | 0.411433 | 5_2:-73879468 | Msa0787810:CDS |
| ATGGAAACTCTTGACTTAGA+AGG | 0.415536 | 5_2:-73881166 | Msa0787810:CDS |
| GCAACTGGTGCATTTGCAAC+AGG | 0.416299 | 5_2:+73879440 | None:intergenic |
| TTGAAATGGAGAAACTCTTA+AGG | 0.417844 | 5_2:-73880991 | Msa0787810:CDS |
| TAATAGGTTGAAGGAAGATA+TGG | 0.418849 | 5_2:-73880612 | Msa0787810:CDS |
| GATCTTGTTCAAGTATTGCT+TGG | 0.420517 | 5_2:-73881130 | Msa0787810:CDS |
| TTGAAAACCAAGATGATTGC+TGG | 0.423791 | 5_2:-73879187 | Msa0787810:CDS |
| GCCTGGACCAGCAATCATCT+TGG | 0.434652 | 5_2:+73879180 | None:intergenic |
| AGGAAGATAGGGTGGAGGAT+GGG | 0.443590 | 5_2:-73880517 | Msa0787810:CDS |
| CTTGAACCTAAAATTGAACC+TGG | 0.445668 | 5_2:-73881253 | Msa0787810:CDS |
| AAGGAAGATAGGGTGGAGGA+TGG | 0.446522 | 5_2:-73880518 | Msa0787810:CDS |
| AAGTTATAATGCTCTCTTGA+AGG | 0.449736 | 5_2:-73880903 | Msa0787810:CDS |
| GAGTGATGAGCTAGAGTGTG+AGG | 0.452371 | 5_2:-73880552 | Msa0787810:CDS |
| TCAGCAGCCATAAAATCAAC+TGG | 0.457108 | 5_2:+73880065 | None:intergenic |
| TTTGGAGTTGACAAAGTTGA+AGG | 0.457739 | 5_2:-73880360 | Msa0787810:CDS |
| TTTGTAGGATCAGGCACATA+AGG | 0.460936 | 5_2:+73879413 | None:intergenic |
| TTGACATATTACTCGCGTCT+TGG | 0.462570 | 5_2:-73880196 | Msa0787810:CDS |
| AAAGTTAAAGATGCATCATC+AGG | 0.464717 | 5_2:-73880011 | Msa0787810:intron |
| AGTCAGGTCTAGTCATGTTA+AGG | 0.465936 | 5_2:-73879254 | Msa0787810:CDS |
| GAAACTTATGAAAGAGTTGA+AGG | 0.466139 | 5_2:-73881094 | Msa0787810:CDS |
| GTGTGAGGTTAATAGGTTGA+AGG | 0.471254 | 5_2:-73880621 | Msa0787810:CDS |
| GGCACATAAGGTATTGCAAC+TGG | 0.471489 | 5_2:+73879425 | None:intergenic |
| CACTGTCTTCAATTACCAAT+GGG | 0.473098 | 5_2:+73879143 | None:intergenic |
| GTGTGAGGTTAATAAGTTGA+AGG | 0.473823 | 5_2:-73880537 | Msa0787810:CDS |
| TTAATAAGTTGAAAGAAGAA+AGG | 0.475430 | 5_2:-73880697 | Msa0787810:CDS |
| ACCAAGATGATTGCTGGTCC+AGG | 0.475629 | 5_2:-73879181 | Msa0787810:CDS |
| TCTATCACTAGACCTGACTT+TGG | 0.479541 | 5_2:+73879219 | None:intergenic |
| TTCTAAGAAGGAGAAACGTT+GGG | 0.480244 | 5_2:-73880817 | Msa0787810:CDS |
| AGCTTAAATGTCTCTGGTGG+TGG | 0.480275 | 5_2:-73880107 | Msa0787810:CDS |
| AAAGAAGAAAGGGTGGAGGA+TGG | 0.483082 | 5_2:-73880686 | Msa0787810:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5_2:-73879270 | Msa0787810:CDS |
| CCAGAGAGAGACCAAAAGAT+TGG | 0.491518 | 5_2:-73879076 | Msa0787810:three_prime_UTR |
| GTCCTAATTGCCTGCATGCA+TGG | 0.492307 | 5_2:+73879052 | None:intergenic |
| TCTGCTCTAAGAGTTGAATC+TGG | 0.493051 | 5_2:+73881038 | None:intergenic |
| AGACTTCATATGACATTAGC+AGG | 0.496406 | 5_2:-73879024 | Msa0787810:three_prime_UTR |
| CTTGCAGAAGGTGCTACAAT+TGG | 0.498019 | 5_2:+73879473 | None:intergenic |
| ATCAAGAATCACGTGGTTGG+AGG | 0.498362 | 5_2:+73881222 | None:intergenic |
| TTGATGAGCTTAAATGTCTC+TGG | 0.501390 | 5_2:-73880113 | Msa0787810:CDS |
| AACATGACTAGACCTGACTT+TGG | 0.503870 | 5_2:+73879258 | None:intergenic |
| TAGGTTCAAGGTTCATGGTA+AGG | 0.506024 | 5_2:+73881266 | None:intergenic |
| AAGGAAGATATGGTGGAGGG+TGG | 0.509218 | 5_2:-73880602 | Msa0787810:CDS |
| TAATAAGTTGAAGGAAGATA+GGG | 0.510480 | 5_2:-73880528 | Msa0787810:CDS |
| GGTACTTCGACATGACCAAC+TGG | 0.512667 | 5_2:+73879500 | None:intergenic |
| GCGGATGATGGCTGTGAGCT+TGG | 0.513466 | 5_2:-73880422 | Msa0787810:CDS |
| ACTCTTAAGGTTAAAGGCTG+AGG | 0.519219 | 5_2:-73880978 | Msa0787810:CDS |
| TAATAAGTTGAAAGAAGAAA+GGG | 0.520930 | 5_2:-73880696 | Msa0787810:CDS |
| AGAGACGAAGATGATGAAGT+TGG | 0.521296 | 5_2:-73881199 | Msa0787810:CDS |
| GTTGAAGGAAGATAGGGTGG+AGG | 0.521973 | 5_2:-73880522 | Msa0787810:CDS |
| AAGAAGAAAGGGTGGAGGAT+GGG | 0.524336 | 5_2:-73880685 | Msa0787810:CDS |
| TTTCTAAGAAGGAGAAACGT+TGG | 0.528902 | 5_2:-73880818 | Msa0787810:CDS |
| GGAAGAGTTAAAGAAAAGAG+AGG | 0.532934 | 5_2:-73880957 | Msa0787810:CDS |
| TAGGTTGAAGGAAGATATGG+TGG | 0.538319 | 5_2:-73880609 | Msa0787810:CDS |
| TGGCAACTATAAGAGAATTG+AGG | 0.540056 | 5_2:-73880256 | Msa0787810:CDS |
| GAAGATTGTATTGTGTGGGC+TGG | 0.542503 | 5_2:-73880326 | Msa0787810:CDS |
| TAAGTTGAAGGAAGATAGGG+TGG | 0.544598 | 5_2:-73880525 | Msa0787810:CDS |
| TGAAGTTGGAGCATTTCCTA+TGG | 0.545820 | 5_2:-73881185 | Msa0787810:CDS |
| TGGTTGGAGGAAGGTGACCC+AGG | 0.547723 | 5_2:+73881235 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+CGG | 0.547979 | 5_2:-73880453 | Msa0787810:CDS |
| AGGAAGATATGGTGGAGGGT+GGG | 0.550407 | 5_2:-73880601 | Msa0787810:CDS |
| ATTGCTTGGATCTTTACAGA+TGG | 0.550510 | 5_2:-73881116 | Msa0787810:CDS |
| TCACTGTCTTCAATTACCAA+TGG | 0.555333 | 5_2:+73879142 | None:intergenic |
| GCAATACTTGAACAAGATCT+GGG | 0.555962 | 5_2:+73881134 | None:intergenic |
| AAAGATTGGTCCATGCATGC+AGG | 0.559005 | 5_2:-73879062 | Msa0787810:three_prime_UTR |
| CAAAGATGCAAGCAGCCCAT+TGG | 0.565479 | 5_2:-73879158 | Msa0787810:CDS |
| TCTATCAAGAATCACGTGGT+TGG | 0.566169 | 5_2:+73881219 | None:intergenic |
| TCTGGTGGTGGAAACAATGA+GGG | 0.566395 | 5_2:-73880095 | Msa0787810:CDS |
| TAAGTTGAAAGAAGAAAGGG+TGG | 0.575684 | 5_2:-73880693 | Msa0787810:CDS |
| CTCTGGTGGTGGAAACAATG+AGG | 0.577778 | 5_2:-73880096 | Msa0787810:CDS |
| AGTTGGTCATGTCGAAGTAC+CGG | 0.578493 | 5_2:-73879498 | Msa0787810:CDS |
| TATAATGCTCTCTTGAAGGA+AGG | 0.584603 | 5_2:-73880899 | Msa0787810:CDS |
| GAATGGTGAGTTGGAGTGTG+AGG | 0.586676 | 5_2:-73880720 | Msa0787810:CDS |
| GAGGGTGATGATATTGATGA+AGG | 0.589257 | 5_2:-73879118 | Msa0787810:CDS |
| GTTGAAAGAAGAAAGGGTGG+AGG | 0.590291 | 5_2:-73880690 | Msa0787810:CDS |
| AGAATCACGTGGTTGGAGGA+AGG | 0.592347 | 5_2:+73881226 | None:intergenic |
| GATGATATTGATGAAGGTGA+TGG | 0.594476 | 5_2:-73879112 | Msa0787810:CDS |
| GAAGGTGCTACAATTGGTGC+CGG | 0.596125 | 5_2:+73879479 | None:intergenic |
| TCTAAGTCAAGAGTTTCCAT+AGG | 0.597975 | 5_2:+73881169 | None:intergenic |
| GTTGAAGGAAGATATGGTGG+AGG | 0.598207 | 5_2:-73880606 | Msa0787810:CDS |
| CTGCATTGTTCTGCACCAGT+TGG | 0.601057 | 5_2:-73879515 | Msa0787810:CDS |
| GTGTTATGAACCATCTATTG+TGG | 0.602181 | 5_2:-73878916 | Msa0787810:three_prime_UTR |
| GAGACAAAAGAATGGTGAGT+TGG | 0.607745 | 5_2:-73880729 | Msa0787810:CDS |
| TTGAAGGAAGATATGGTGGA+GGG | 0.608134 | 5_2:-73880605 | Msa0787810:CDS |
| TCTCTTGAAGGAAGGCAAGA+CGG | 0.610347 | 5_2:-73880891 | Msa0787810:CDS |
| GAATGATGAGTTGGAGTGTG+AGG | 0.613027 | 5_2:-73880636 | Msa0787810:CDS |
| GTAATTGAAGACAGTGATGA+GGG | 0.618776 | 5_2:-73879136 | Msa0787810:CDS |
| TAAGTTGACACAAGAAAGTG+AGG | 0.628177 | 5_2:-73880852 | Msa0787810:CDS |
| AAACGTTGGGTTGAAGTGTG+AGG | 0.632328 | 5_2:-73880804 | Msa0787810:CDS |
| GGAGGAAGATTGTATTGTGT+GGG | 0.635950 | 5_2:-73880330 | Msa0787810:CDS |
| GATACAGAGACCGCTCGAAG+TGG | 0.636412 | 5_2:+73878827 | None:intergenic |
| GGATCAACCTGACTTGCAGA+AGG | 0.648405 | 5_2:+73879461 | None:intergenic |
| CTGGTGGTGGAAACAATGAG+GGG | 0.648857 | 5_2:-73880094 | Msa0787810:CDS |
| GAAGTGTTGAGACAAAAGAA+TGG | 0.649570 | 5_2:-73880737 | Msa0787810:CDS |
| GGGAGGAAGATTGTATTGTG+TGG | 0.661249 | 5_2:-73880331 | Msa0787810:CDS |
| CGTCTCTATCAAGAATCACG+TGG | 0.663157 | 5_2:+73881215 | None:intergenic |
| TTGAACCTAAAATTGAACCT+GGG | 0.665749 | 5_2:-73881252 | Msa0787810:CDS |
| GAATGATGAGTTGAAGTGTG+AGG | 0.673142 | 5_2:-73880468 | Msa0787810:CDS |
| GGTAATTGAAGACAGTGATG+AGG | 0.677445 | 5_2:-73879137 | Msa0787810:CDS |
| ATGAGCTTAAATGTCTCTGG+TGG | 0.688563 | 5_2:-73880110 | Msa0787810:CDS |
| GTGTTATGAACCACTTCGAG+CGG | 0.691445 | 5_2:-73878837 | Msa0787810:three_prime_UTR |
| CTTCATATGACATTAGCAGG+AGG | 0.696178 | 5_2:-73879021 | Msa0787810:three_prime_UTR |
| TGGTGGTGGAAACAATGAGG+GGG | 0.698952 | 5_2:-73880093 | Msa0787810:CDS |
| GCAGCCATAAAATCAACTGG+AGG | 0.708098 | 5_2:+73880068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTGTAAAGAAATTATA+GGG | + | chr5_2:73880334-73880353 | None:intergenic | 15.0% |
| !! | ATATAGTGTAAAGAAATTAT+AGG | + | chr5_2:73880335-73880354 | None:intergenic | 15.0% |
| !! | AAATACAAACATTATACATA+AGG | + | chr5_2:73880385-73880404 | None:intergenic | 15.0% |
| !!! | TTTATACATTATTTTAGACT+AGG | - | chr5_2:73880499-73880518 | Msa0787810:CDS | 15.0% |
| !!! | TTATACATTATTTTAGACTA+GGG | - | chr5_2:73880500-73880519 | Msa0787810:CDS | 15.0% |
| !!! | TATTGTTAGTAACTTTATTT+TGG | - | chr5_2:73881236-73881255 | Msa0787810:CDS | 15.0% |
| !!! | AAACTATTGATTTTCTAAGA+AGG | - | chr5_2:73879281-73879300 | Msa0787810:CDS | 20.0% |
| !!! | TTAATAAGTTGAAAGAAGAA+AGG | - | chr5_2:73879413-73879432 | Msa0787810:CDS | 20.0% |
| !!! | TAATAAGTTGAAAGAAGAAA+GGG | - | chr5_2:73879414-73879433 | Msa0787810:CDS | 20.0% |
| !! | TATATATGATTTCATCAATG+AGG | + | chr5_2:73880286-73880305 | None:intergenic | 20.0% |
| !! | ATGAAATCATATATATTCGA+AGG | - | chr5_2:73880291-73880310 | Msa0787810:CDS | 20.0% |
| !!! | ATATTTTATTGTATCTCTAG+TGG | - | chr5_2:73880419-73880438 | Msa0787810:CDS | 20.0% |
| !!! | TATTTTATTGTATCTCTAGT+GGG | - | chr5_2:73880420-73880439 | Msa0787810:CDS | 20.0% |
| !!! | TGTAAGTTATGTATTTTACA+GGG | - | chr5_2:73880782-73880801 | Msa0787810:CDS | 20.0% |
| !!! | AGTAATCAGTAACTTTATTT+TGG | - | chr5_2:73881156-73881175 | Msa0787810:CDS | 20.0% |
| !!! | AATTGTTAGTAACTTTGTTT+TGG | - | chr5_2:73881314-73881333 | Msa0787810:five_prime_UTR | 20.0% |
| !! | TTAATAAGTTGAAGGAAGAT+AGG | - | chr5_2:73879581-73879600 | Msa0787810:intron | 25.0% |
| !! | TAATAAGTTGAAGGAAGATA+GGG | - | chr5_2:73879582-73879601 | Msa0787810:intron | 25.0% |
| ! | TGAAACAGTAAACAAGAATT+TGG | - | chr5_2:73879834-73879853 | Msa0787810:intron | 25.0% |
| ! | ATTTAAGCTCATCAATAGTT+TGG | + | chr5_2:73879992-73880011 | None:intergenic | 25.0% |
| !! | TGGGTATTGTATTTCTATTA+GGG | - | chr5_2:73880439-73880458 | Msa0787810:CDS | 25.0% |
| ! | ACATATCAGCTAAGATATTT+GGG | + | chr5_2:73880540-73880559 | None:intergenic | 25.0% |
| ! | AACATATCAGCTAAGATATT+TGG | + | chr5_2:73880541-73880560 | None:intergenic | 25.0% |
| ! | GCTTAAATACTTACATTTGT+AGG | + | chr5_2:73880715-73880734 | None:intergenic | 25.0% |
| !! | GTGTAAGTTATGTATTTTAC+AGG | - | chr5_2:73880781-73880800 | Msa0787810:CDS | 25.0% |
| !! | GTATTTTACAGGGAAATAAA+AGG | - | chr5_2:73880792-73880811 | Msa0787810:CDS | 25.0% |
| ! | GTCAAAATCATTACATGTTA+AGG | - | chr5_2:73880817-73880836 | Msa0787810:CDS | 25.0% |
| CAGAAAAATGCAAACTTTAG+TGG | + | chr5_2:73878824-73878843 | None:intergenic | 30.0% | |
| !!! | AATTTTAGGTTCAAGGTTCA+TGG | + | chr5_2:73878852-73878871 | None:intergenic | 30.0% |
| TTGAACCTAAAATTGAACCT+GGG | - | chr5_2:73878858-73878877 | Msa0787810:three_prime_UTR | 30.0% | |
| GAAACTTATGAAAGAGTTGA+AGG | - | chr5_2:73879016-73879035 | Msa0787810:three_prime_UTR | 30.0% | |
| TTGAAATGGAGAAACTCTTA+AGG | - | chr5_2:73879119-73879138 | Msa0787810:CDS | 30.0% | |
| AAGTTATAATGCTCTCTTGA+AGG | - | chr5_2:73879207-73879226 | Msa0787810:CDS | 30.0% | |
| GAGAAAAAAGAATGATGAGT+TGG | - | chr5_2:73879465-73879484 | Msa0787810:CDS | 30.0% | |
| ! | TAATAGGTTGAAGGAAGATA+TGG | - | chr5_2:73879498-73879517 | Msa0787810:CDS | 30.0% |
| ! | TAATAGGTTGACGGAAAAAA+CGG | - | chr5_2:73879666-73879685 | Msa0787810:intron | 30.0% |
| ! | TGAGATGGATAATAAGGTTT+TGG | - | chr5_2:73879732-73879751 | Msa0787810:intron | 30.0% |
| TGACAAAGTTGAAGGAAAAA+TGG | - | chr5_2:73879758-73879777 | Msa0787810:intron | 30.0% | |
| GACAAAGTTGAAGGAAAAAT+GGG | - | chr5_2:73879759-73879778 | Msa0787810:intron | 30.0% | |
| GCTGGAATTGAGATTAAAAA+TGG | - | chr5_2:73879802-73879821 | Msa0787810:intron | 30.0% | |
| TCTTGCATGAAAAAGTTTCA+AGG | - | chr5_2:73879953-73879972 | Msa0787810:intron | 30.0% | |
| AAAGTTAAAGATGCATCATC+AGG | - | chr5_2:73880099-73880118 | Msa0787810:CDS | 30.0% | |
| GGTATGGAATTGAATTCAAT+AGG | - | chr5_2:73880120-73880139 | Msa0787810:CDS | 30.0% | |
| GGTGTGATCAAATAAATGTT+TGG | - | chr5_2:73880141-73880160 | Msa0787810:CDS | 30.0% | |
| AAATGTTTGGTTAGATTGCT+AGG | - | chr5_2:73880154-73880173 | Msa0787810:CDS | 30.0% | |
| ACTACATGCTTCAATAAAAC+AGG | + | chr5_2:73880208-73880227 | None:intergenic | 30.0% | |
| !! | GTTTTATTGAAGCATGTAGT+AGG | - | chr5_2:73880208-73880227 | Msa0787810:CDS | 30.0% |
| !! | ATAACTTGTTTGAACTTGTG+AGG | - | chr5_2:73880240-73880259 | Msa0787810:CDS | 30.0% |
| TCGAAGGTTAAATTAGTAAG+TGG | - | chr5_2:73880307-73880326 | Msa0787810:CDS | 30.0% | |
| ! | GTGGGTATTGTATTTCTATT+AGG | - | chr5_2:73880438-73880457 | Msa0787810:CDS | 30.0% |
| ! | GGGTATTGTATTTCTATTAG+GGG | - | chr5_2:73880440-73880459 | Msa0787810:CDS | 30.0% |
| ATACTTACATTTGTAGGATC+AGG | + | chr5_2:73880709-73880728 | None:intergenic | 30.0% | |
| GATAACAATACCACAATAGA+TGG | + | chr5_2:73881207-73881226 | None:intergenic | 30.0% | |
| !!! | CAGGTTCAATTTTAGGTTCA+AGG | + | chr5_2:73878859-73878878 | None:intergenic | 35.0% |
| CTTGAACCTAAAATTGAACC+TGG | - | chr5_2:73878857-73878876 | Msa0787810:three_prime_UTR | 35.0% | |
| TCTAAGTCAAGAGTTTCCAT+AGG | + | chr5_2:73878944-73878963 | None:intergenic | 35.0% | |
| ATGGAAACTCTTGACTTAGA+AGG | - | chr5_2:73878944-73878963 | Msa0787810:three_prime_UTR | 35.0% | |
| GCAATACTTGAACAAGATCT+GGG | + | chr5_2:73878979-73878998 | None:intergenic | 35.0% | |
| AGCAATACTTGAACAAGATC+TGG | + | chr5_2:73878980-73878999 | None:intergenic | 35.0% | |
| ! | GATCTTGTTCAAGTATTGCT+TGG | - | chr5_2:73878980-73878999 | Msa0787810:three_prime_UTR | 35.0% |
| ATTGCTTGGATCTTTACAGA+TGG | - | chr5_2:73878994-73879013 | Msa0787810:three_prime_UTR | 35.0% | |
| !!! | TGAAAGAGTTGAAGGTGTTT+TGG | - | chr5_2:73879024-73879043 | Msa0787810:three_prime_UTR | 35.0% |
| CTTAGAGCAGAATGTTGAAA+TGG | - | chr5_2:73879084-73879103 | Msa0787810:exon | 35.0% | |
| GGAAAGACAACAACTTGAAA+TGG | - | chr5_2:73879105-73879124 | Msa0787810:CDS | 35.0% | |
| GGAGAAACTCTTAAGGTTAA+AGG | - | chr5_2:73879126-73879145 | Msa0787810:CDS | 35.0% | |
| GGAAGAGTTAAAGAAAAGAG+AGG | - | chr5_2:73879153-73879172 | Msa0787810:CDS | 35.0% | |
| TATAATGCTCTCTTGAAGGA+AGG | - | chr5_2:73879211-73879230 | Msa0787810:CDS | 35.0% | |
| ! | TAAGTTGACACAAGAAAGTG+AGG | - | chr5_2:73879258-73879277 | Msa0787810:CDS | 35.0% |
| ! | TTTCTAAGAAGGAGAAACGT+TGG | - | chr5_2:73879292-73879311 | Msa0787810:CDS | 35.0% |
| ! | TTCTAAGAAGGAGAAACGTT+GGG | - | chr5_2:73879293-73879312 | Msa0787810:CDS | 35.0% |
| ! | TTGACAGGTTGAACGAAAAA+AGG | - | chr5_2:73879329-73879348 | Msa0787810:intron | 35.0% |
| ! | TGACAGGTTGAACGAAAAAA+GGG | - | chr5_2:73879330-73879349 | Msa0787810:intron | 35.0% |
| !! | GAAGTGTTGAGACAAAAGAA+TGG | - | chr5_2:73879373-73879392 | Msa0787810:intron | 35.0% |
| ! | TAAGTTGAAAGAAGAAAGGG+TGG | - | chr5_2:73879417-73879436 | Msa0787810:CDS | 35.0% |
| ! | GTGTGAGGTTAATAAGTTGA+AGG | - | chr5_2:73879405-73879424 | Msa0787810:intron | 35.0% |
| AGTTGAAGTGTGAGGTTAAT+AGG | - | chr5_2:73879650-73879669 | Msa0787810:intron | 35.0% | |
| ! | TTTGGAGTTGACAAAGTTGA+AGG | - | chr5_2:73879750-73879769 | Msa0787810:intron | 35.0% |
| AAAGTTGAAGGAAAAATGGG+AGG | - | chr5_2:73879762-73879781 | Msa0787810:intron | 35.0% | |
| TGGCAACTATAAGAGAATTG+AGG | - | chr5_2:73879854-73879873 | Msa0787810:intron | 35.0% | |
| TTGATGAGCTTAAATGTCTC+TGG | - | chr5_2:73879997-73880016 | Msa0787810:intron | 35.0% | |
| TAAAGATGCATCATCAGGTA+TGG | - | chr5_2:73880104-73880123 | Msa0787810:CDS | 35.0% | |
| GGGGTTGTATCATATTATGT+AGG | - | chr5_2:73880459-73880478 | Msa0787810:CDS | 35.0% | |
| TTGAAAACCAAGATGATTGC+TGG | - | chr5_2:73880923-73880942 | Msa0787810:CDS | 35.0% | |
| CACTGTCTTCAATTACCAAT+GGG | + | chr5_2:73880970-73880989 | None:intergenic | 35.0% | |
| TCACTGTCTTCAATTACCAA+TGG | + | chr5_2:73880971-73880990 | None:intergenic | 35.0% | |
| GTAATTGAAGACAGTGATGA+GGG | - | chr5_2:73880974-73880993 | Msa0787810:CDS | 35.0% | |
| GATGATATTGATGAAGGTGA+TGG | - | chr5_2:73880998-73881017 | Msa0787810:CDS | 35.0% | |
| AGACTTCATATGACATTAGC+AGG | - | chr5_2:73881086-73881105 | Msa0787810:CDS | 35.0% | |
| GTGTTATGAACCATCTATTG+TGG | - | chr5_2:73881194-73881213 | Msa0787810:CDS | 35.0% | |
| TAGGTTCAAGGTTCATGGTA+AGG | + | chr5_2:73878847-73878866 | None:intergenic | 40.0% | |
| TCTATCAAGAATCACGTGGT+TGG | + | chr5_2:73878894-73878913 | None:intergenic | 40.0% | |
| AGAGACGAAGATGATGAAGT+TGG | - | chr5_2:73878911-73878930 | Msa0787810:three_prime_UTR | 40.0% | |
| ! | TGAAGTTGGAGCATTTCCTA+TGG | - | chr5_2:73878925-73878944 | Msa0787810:three_prime_UTR | 40.0% |
| !!! | TTGAAGGTGTTTTGGTGAGA+AGG | - | chr5_2:73879032-73879051 | Msa0787810:three_prime_UTR | 40.0% |
| !!! | TGAAGGTGTTTTGGTGAGAA+GGG | - | chr5_2:73879033-73879052 | Msa0787810:three_prime_UTR | 40.0% |
| !!! | TGTTTTGGTGAGAAGGGATT+TGG | - | chr5_2:73879039-73879058 | Msa0787810:three_prime_UTR | 40.0% |
| !! | GTTTTGGTGAGAAGGGATTT+GGG | - | chr5_2:73879040-73879059 | Msa0787810:three_prime_UTR | 40.0% |
| !! | TCTGCTCTAAGAGTTGAATC+TGG | + | chr5_2:73879075-73879094 | None:intergenic | 40.0% |
| ACTCTTAAGGTTAAAGGCTG+AGG | - | chr5_2:73879132-73879151 | Msa0787810:CDS | 40.0% | |
| ! | GTCTCAACACTTCAAGTTCA+TGG | + | chr5_2:73879366-73879385 | None:intergenic | 40.0% |
| GAGACAAAAGAATGGTGAGT+TGG | - | chr5_2:73879381-73879400 | Msa0787810:intron | 40.0% | |
| AGTTGGAGTGTGAGGTTAAT+AGG | - | chr5_2:73879398-73879417 | Msa0787810:intron | 40.0% | |
| ! | GTGTGAGGTTAATAGGTTGA+AGG | - | chr5_2:73879489-73879508 | Msa0787810:CDS | 40.0% |
| ! | TAGGTTGAAGGAAGATATGG+TGG | - | chr5_2:73879501-73879520 | Msa0787810:CDS | 40.0% |
| ! | TTGAAGGAAGATATGGTGGA+GGG | - | chr5_2:73879505-73879524 | Msa0787810:CDS | 40.0% |
| ! | TAAGTTGAAGGAAGATAGGG+TGG | - | chr5_2:73879585-73879604 | Msa0787810:intron | 40.0% |
| ! | GAATGATGAGTTGAAGTGTG+AGG | - | chr5_2:73879642-73879661 | Msa0787810:intron | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+CGG | - | chr5_2:73879489-73879508 | Msa0787810:CDS | 40.0% |
| GAGAAAAATGACTGGTGAGA+TGG | - | chr5_2:73879717-73879736 | Msa0787810:intron | 40.0% | |
| GACTGGTGAGATGGATAATA+AGG | - | chr5_2:73879726-73879745 | Msa0787810:intron | 40.0% | |
| GGAGGAAGATTGTATTGTGT+GGG | - | chr5_2:73879780-73879799 | Msa0787810:intron | 40.0% | |
| TTGACATATTACTCGCGTCT+TGG | - | chr5_2:73879914-73879933 | Msa0787810:intron | 40.0% | |
| GCATGAAAAAGTTTCAAGGC+TGG | - | chr5_2:73879957-73879976 | Msa0787810:intron | 40.0% | |
| TGAAAAAGTTTCAAGGCTGG+AGG | - | chr5_2:73879960-73879979 | Msa0787810:intron | 40.0% | |
| ATGAGCTTAAATGTCTCTGG+TGG | - | chr5_2:73880000-73880019 | Msa0787810:intron | 40.0% | |
| !! | GGATCCTCCAGTTGATTTTA+TGG | - | chr5_2:73880038-73880057 | Msa0787810:CDS | 40.0% |
| TCAGCAGCCATAAAATCAAC+TGG | + | chr5_2:73880048-73880067 | None:intergenic | 40.0% | |
| GTTTGGTTAGATTGCTAGGT+AGG | - | chr5_2:73880158-73880177 | Msa0787810:CDS | 40.0% | |
| AAACAGGAAAATCACGTTCC+AGG | + | chr5_2:73880192-73880211 | None:intergenic | 40.0% | |
| ACTTGTGAGGCTACTAGTAA+TGG | - | chr5_2:73880253-73880272 | Msa0787810:CDS | 40.0% | |
| TTTGTAGGATCAGGCACATA+AGG | + | chr5_2:73880700-73880719 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | - | chr5_2:73880840-73880859 | Msa0787810:CDS | 40.0% | |
| AACATGACTAGACCTGACTT+TGG | + | chr5_2:73880855-73880874 | None:intergenic | 40.0% | |
| AGTCAGGTCTAGTCATGTTA+AGG | - | chr5_2:73880856-73880875 | Msa0787810:CDS | 40.0% | |
| ATGTCGCAAAAACCAAAGTC+AGG | - | chr5_2:73880879-73880898 | Msa0787810:CDS | 40.0% | |
| TCTATCACTAGACCTGACTT+TGG | + | chr5_2:73880894-73880913 | None:intergenic | 40.0% | |
| GGTAATTGAAGACAGTGATG+AGG | - | chr5_2:73880973-73880992 | Msa0787810:CDS | 40.0% | |
| GAGGGTGATGATATTGATGA+AGG | - | chr5_2:73880992-73881011 | Msa0787810:CDS | 40.0% | |
| CTTCATATGACATTAGCAGG+AGG | - | chr5_2:73881089-73881108 | Msa0787810:CDS | 40.0% | |
| ! | GGTGACCCAGGTTCAATTTT+AGG | + | chr5_2:73878866-73878885 | None:intergenic | 45.0% |
| ATCAAGAATCACGTGGTTGG+AGG | + | chr5_2:73878891-73878910 | None:intergenic | 45.0% | |
| CGTCTCTATCAAGAATCACG+TGG | + | chr5_2:73878898-73878917 | None:intergenic | 45.0% | |
| TCTCTTGAAGGAAGGCAAGA+CGG | - | chr5_2:73879219-73879238 | Msa0787810:CDS | 45.0% | |
| !! | AAACGTTGGGTTGAAGTGTG+AGG | - | chr5_2:73879306-73879325 | Msa0787810:CDS | 45.0% |
| ! | CAGGTTGAACGAAAAAAGGG+AGG | - | chr5_2:73879333-73879352 | Msa0787810:intron | 45.0% |
| GTTGAACGAAAAAAGGGAGG+AGG | - | chr5_2:73879336-73879355 | Msa0787810:intron | 45.0% | |
| GTTGAAAGAAGAAAGGGTGG+AGG | - | chr5_2:73879420-73879439 | Msa0787810:CDS | 45.0% | |
| AAAGAAGAAAGGGTGGAGGA+TGG | - | chr5_2:73879424-73879443 | Msa0787810:CDS | 45.0% | |
| AAGAAGAAAGGGTGGAGGAT+GGG | - | chr5_2:73879425-73879444 | Msa0787810:CDS | 45.0% | |
| ! | GAATGATGAGTTGGAGTGTG+AGG | - | chr5_2:73879474-73879493 | Msa0787810:CDS | 45.0% |
| GTTGAAGGAAGATATGGTGG+AGG | - | chr5_2:73879504-73879523 | Msa0787810:CDS | 45.0% | |
| ! | TAGGTTGACGGAAAAAACGG+CGG | - | chr5_2:73879669-73879688 | Msa0787810:intron | 45.0% |
| GGTGTGCAGAGAAAAATGAC+TGG | - | chr5_2:73879709-73879728 | Msa0787810:intron | 45.0% | |
| GGGAGGAAGATTGTATTGTG+TGG | - | chr5_2:73879779-73879798 | Msa0787810:intron | 45.0% | |
| GAAGATTGTATTGTGTGGGC+TGG | - | chr5_2:73879784-73879803 | Msa0787810:intron | 45.0% | |
| AGCTTAAATGTCTCTGGTGG+TGG | - | chr5_2:73880003-73880022 | Msa0787810:intron | 45.0% | |
| !! | TCTGGTGGTGGAAACAATGA+GGG | - | chr5_2:73880015-73880034 | Msa0787810:CDS | 45.0% |
| GCAGCCATAAAATCAACTGG+AGG | + | chr5_2:73880045-73880064 | None:intergenic | 45.0% | |
| AGATTGCTAGGTAGGTAGCT+TGG | - | chr5_2:73880166-73880185 | Msa0787810:CDS | 45.0% | |
| AGTTGGTCATGTCGAAGTAC+CGG | - | chr5_2:73880612-73880631 | Msa0787810:CDS | 45.0% | |
| !! | CTTGCAGAAGGTGCTACAAT+TGG | + | chr5_2:73880640-73880659 | None:intergenic | 45.0% |
| !! | GGCACATAAGGTATTGCAAC+TGG | + | chr5_2:73880688-73880707 | None:intergenic | 45.0% |
| ATTCACTCACACACACACAC+AGG | + | chr5_2:73880743-73880762 | None:intergenic | 45.0% | |
| ! | CCAATCTTTTGGTCTCTCTC+TGG | + | chr5_2:73881037-73881056 | None:intergenic | 45.0% |
| CCAGAGAGAGACCAAAAGAT+TGG | - | chr5_2:73881034-73881053 | Msa0787810:CDS | 45.0% | |
| ! | GCATGCATGGACCAATCTTT+TGG | + | chr5_2:73881048-73881067 | None:intergenic | 45.0% |
| ! | AAAGATTGGTCCATGCATGC+AGG | - | chr5_2:73881048-73881067 | Msa0787810:CDS | 45.0% |
| GTGTTATGAACCACTTCGAG+CGG | - | chr5_2:73881273-73881292 | Msa0787810:exon | 45.0% | |
| AGAATCACGTGGTTGGAGGA+AGG | + | chr5_2:73878887-73878906 | None:intergenic | 50.0% | |
| GGTTGAAGTGTGAGGTTGAC+AGG | - | chr5_2:73879314-73879333 | Msa0787810:intron | 50.0% | |
| ! | GAATGGTGAGTTGGAGTGTG+AGG | - | chr5_2:73879390-73879409 | Msa0787810:intron | 50.0% |
| ! | AAGGAAGATATGGTGGAGGG+TGG | - | chr5_2:73879508-73879527 | Msa0787810:CDS | 50.0% |
| ! | AGGAAGATATGGTGGAGGGT+GGG | - | chr5_2:73879509-73879528 | Msa0787810:CDS | 50.0% |
| GAGTGATGAGCTAGAGTGTG+AGG | - | chr5_2:73879558-73879577 | Msa0787810:CDS | 50.0% | |
| GTTGAAGGAAGATAGGGTGG+AGG | - | chr5_2:73879588-73879607 | Msa0787810:intron | 50.0% | |
| AAGGAAGATAGGGTGGAGGA+TGG | - | chr5_2:73879592-73879611 | Msa0787810:intron | 50.0% | |
| AGGAAGATAGGGTGGAGGAT+GGG | - | chr5_2:73879593-73879612 | Msa0787810:intron | 50.0% | |
| ACGGAAAAAACGGCGGATGA+TGG | - | chr5_2:73879676-73879695 | Msa0787810:intron | 50.0% | |
| !! | CTCTGGTGGTGGAAACAATG+AGG | - | chr5_2:73880014-73880033 | Msa0787810:CDS | 50.0% |
| !! | CTGGTGGTGGAAACAATGAG+GGG | - | chr5_2:73880016-73880035 | Msa0787810:CDS | 50.0% |
| !! | TGGTGGTGGAAACAATGAGG+GGG | - | chr5_2:73880017-73880036 | Msa0787810:CDS | 50.0% |
| CTGCATTGTTCTGCACCAGT+TGG | - | chr5_2:73880595-73880614 | Msa0787810:CDS | 50.0% | |
| GGTACTTCGACATGACCAAC+TGG | + | chr5_2:73880613-73880632 | None:intergenic | 50.0% | |
| !! | GAAGGTGCTACAATTGGTGC+CGG | + | chr5_2:73880634-73880653 | None:intergenic | 50.0% |
| TGTAGCACCTTCTGCAAGTC+AGG | - | chr5_2:73880642-73880661 | Msa0787810:CDS | 50.0% | |
| ! | GGATCAACCTGACTTGCAGA+AGG | + | chr5_2:73880652-73880671 | None:intergenic | 50.0% |
| GCAACTGGTGCATTTGCAAC+AGG | + | chr5_2:73880673-73880692 | None:intergenic | 50.0% | |
| ACCAAGATGATTGCTGGTCC+AGG | - | chr5_2:73880929-73880948 | Msa0787810:CDS | 50.0% | |
| CAAAGATGCAAGCAGCCCAT+TGG | - | chr5_2:73880952-73880971 | Msa0787810:CDS | 50.0% | |
| GTCCATGCATGCAGGCAATT+AGG | - | chr5_2:73881056-73881075 | Msa0787810:CDS | 50.0% | |
| GTCCTAATTGCCTGCATGCA+TGG | + | chr5_2:73881061-73881080 | None:intergenic | 50.0% | |
| GGAAGATAGGGTGGAGGATG+GGG | - | chr5_2:73879594-73879613 | Msa0787810:intron | 55.0% | |
| GCCTGGACCAGCAATCATCT+TGG | + | chr5_2:73880933-73880952 | None:intergenic | 55.0% | |
| GATACAGAGACCGCTCGAAG+TGG | + | chr5_2:73881286-73881305 | None:intergenic | 55.0% | |
| TGGTTGGAGGAAGGTGACCC+AGG | + | chr5_2:73878878-73878897 | None:intergenic | 60.0% | |
| ! | GCGGATGATGGCTGTGAGCT+TGG | - | chr5_2:73879688-73879707 | Msa0787810:intron | 60.0% |
| GCTAGGTAGGTAGCTTGGCC+TGG | - | chr5_2:73880171-73880190 | Msa0787810:CDS | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | + | chr5_2:73880950-73880969 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73878780 | 73881352 | 73878780 | ID=Msa0787810;Name=Msa0787810 |
| chr5_2 | mRNA | 73878780 | 73881352 | 73878780 | ID=Msa0787810-mRNA-1;Parent=Msa0787810;Name=Msa0787810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|0.5|0.66|1|1|1|3|319|556 |
| chr5_2 | exon | 73878780 | 73879329 | 73878780 | ID=Msa0787810-mRNA-1:exon:22518;Parent=Msa0787810-mRNA-1 |
| chr5_2 | exon | 73879412 | 73879581 | 73879412 | ID=Msa0787810-mRNA-1:exon:22517;Parent=Msa0787810-mRNA-1 |
| chr5_2 | exon | 73880012 | 73881352 | 73880012 | ID=Msa0787810-mRNA-1:exon:22516;Parent=Msa0787810-mRNA-1 |
| chr5_2 | five_prime_UTR | 73881282 | 73881352 | 73881282 | ID=Msa0787810-mRNA-1:five_prime_utr;Parent=Msa0787810-mRNA-1 |
| chr5_2 | CDS | 73880012 | 73881281 | 73880012 | ID=Msa0787810-mRNA-1:cds;Parent=Msa0787810-mRNA-1 |
| chr5_2 | CDS | 73879412 | 73879581 | 73879412 | ID=Msa0787810-mRNA-1:cds;Parent=Msa0787810-mRNA-1 |
| chr5_2 | CDS | 73879099 | 73879329 | 73879099 | ID=Msa0787810-mRNA-1:cds;Parent=Msa0787810-mRNA-1 |
| chr5_2 | three_prime_UTR | 73878780 | 73879098 | 73878780 | ID=Msa0787810-mRNA-1:three_prime_utr;Parent=Msa0787810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
