Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831120 | AES94318.1 | 91.392 | 395 | 34 | 0 | 1 | 395 | 1 | 395 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831120 | G7JXG1 | 91.392 | 395 | 34 | 0 | 1 | 395 | 1 | 395 | 0.0 | 740 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658640 | Msa0831120 | 0.818296 | 2.110985e-52 | -8.615850e-47 |
| Msa0703600 | Msa0831120 | 0.801199 | 1.007706e-48 | -8.615850e-47 |
| Msa0709200 | Msa0831120 | 0.801061 | 1.075623e-48 | -8.615850e-47 |
| Msa0761670 | Msa0831120 | 0.810073 | 1.381627e-50 | -8.615850e-47 |
| Msa0795870 | Msa0831120 | 0.804527 | 2.069576e-49 | -8.615850e-47 |
| Msa0824450 | Msa0831120 | 0.815564 | 8.665876e-52 | -8.615850e-47 |
| Msa0831120 | Msa1094010 | 0.808103 | 3.650045e-50 | -8.615850e-47 |
| Msa0831120 | Msa1132840 | 0.801216 | 9.998699e-49 | -8.615850e-47 |
| Msa0831120 | Msa1215870 | 0.815663 | 8.235867e-52 | -8.615850e-47 |
| Msa0831120 | Msa1226520 | 0.821699 | 3.514319e-53 | -8.615850e-47 |
| Msa0831120 | Msa1343180 | 0.808767 | 2.634108e-50 | -8.615850e-47 |
| Msa0831120 | Msa1420950 | 0.803143 | 4.011545e-49 | -8.615850e-47 |
| Msa0831120 | Msa1421570 | 0.807667 | 4.519260e-50 | -8.615850e-47 |
| Msa0831120 | Msa1440880 | 0.809904 | 1.502217e-50 | -8.615850e-47 |
| Msa0190570 | Msa0831120 | 0.817661 | 2.936841e-52 | -8.615850e-47 |
| Msa0225860 | Msa0831120 | 0.810453 | 1.144150e-50 | -8.615850e-47 |
| Msa0419540 | Msa0831120 | 0.802782 | 4.764280e-49 | -8.615850e-47 |
| Msa0567170 | Msa0831120 | 0.814548 | 1.456784e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831120 | MtrunA17_Chr5g0399601 | 91.473 | 387 | 33 | 0 | 9 | 395 | 26 | 412 | 0.0 | 728 |
| Msa0831120 | MtrunA17_Chr5g0399571 | 70.000 | 140 | 40 | 1 | 114 | 251 | 1 | 140 | 4.50e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831120 | AT4G16807.1 | 39.130 | 115 | 52 | 2 | 5 | 117 | 65 | 163 | 4.30e-13 | 70.9 |
Find 78 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTTCAACACAAACTTTC+GGG | 0.249535 | 5_4:-4138751 | None:intergenic |
| AATAATATGCTATAGAATTT+AGG | 0.261597 | 5_4:-4139846 | None:intergenic |
| TCGTCGTCATCGTGCCCTTC+TGG | 0.289085 | 5_4:+4137255 | Msa0831120:CDS |
| TTATAGTACTATTACGTTCA+TGG | 0.347490 | 5_4:-4139872 | None:intergenic |
| TATTGCCAGCACTTCCCATT+TGG | 0.366346 | 5_4:+4139199 | Msa0831120:CDS |
| TCCAATGTCATGGAGATTAC+AGG | 0.369680 | 5_4:+4139701 | Msa0831120:CDS |
| CGTAATAGTACTATAACATT+AGG | 0.379309 | 5_4:+4139879 | Msa0831120:three_prime_UTR |
| TTTCAGAGCCTCCTGATGTT+GGG | 0.387418 | 5_4:+4137410 | Msa0831120:intron |
| AGCCTCCTGATGTTGGGAAT+TGG | 0.387623 | 5_4:+4137416 | Msa0831120:CDS |
| AGAAGCGCATTTAATGTCAT+TGG | 0.389700 | 5_4:+4139331 | Msa0831120:CDS |
| TTGTGTTCAACACAAACTTT+CGG | 0.390958 | 5_4:-4138752 | None:intergenic |
| CGCATAATGAGCCGGTGAAC+CGG | 0.395632 | 5_4:+4139282 | Msa0831120:CDS |
| CATAATTGCTGAAACATTAG+AGG | 0.397823 | 5_4:+4139907 | Msa0831120:three_prime_UTR |
| AGCTCAGGCACACATTTCTC+TGG | 0.405970 | 5_4:+4138403 | Msa0831120:CDS |
| AGGTTAGGGTTCAAGATGAA+TGG | 0.407110 | 5_4:+4137554 | Msa0831120:CDS |
| AACCAGGAGTTCCATGATTC+CGG | 0.410764 | 5_4:-4139301 | None:intergenic |
| TTCAAAGCAGGCCCACGATC+AGG | 0.440360 | 5_4:-4139752 | None:intergenic |
| AAATTTCACTCTCGAAGAAT+CGG | 0.441523 | 5_4:+4137477 | Msa0831120:CDS |
| TGAATATCAATCTCCCAATC+TGG | 0.442361 | 5_4:+4137450 | Msa0831120:CDS |
| GAGAACCAGTTTCTGATATC+CGG | 0.443196 | 5_4:-4138587 | None:intergenic |
| AAATAATGAAAAGAGGTTAG+AGG | 0.443512 | 5_4:-4137170 | None:intergenic |
| GCTAAACATGTGTTGATGTC+AGG | 0.446908 | 5_4:-4139449 | None:intergenic |
| ATGTTTAGCTAAAAGATTCT+CGG | 0.447592 | 5_4:+4139463 | Msa0831120:CDS |
| GTGAAATTTGAATCCAGATT+GGG | 0.447623 | 5_4:-4137463 | None:intergenic |
| TCATGGAGATTACAGGGAAA+TGG | 0.453039 | 5_4:+4139708 | Msa0831120:CDS |
| AATCTGGATTCTTGCAGCTC+AGG | 0.454144 | 5_4:+4138388 | Msa0831120:CDS |
| GCAGCCATGCATGCAAGATA+AGG | 0.455441 | 5_4:+4139232 | Msa0831120:CDS |
| AGTGAAATTTGAATCCAGAT+TGG | 0.462440 | 5_4:-4137464 | None:intergenic |
| GACATTGGACTGTTGAAGAT+TGG | 0.464044 | 5_4:-4139687 | None:intergenic |
| TCCATTGTCATGTGAAAAGA+AGG | 0.465069 | 5_4:+4139631 | Msa0831120:CDS |
| AGCCTCCGGATATCAGAAAC+TGG | 0.465768 | 5_4:+4138582 | Msa0831120:CDS |
| GAGAACCAATTCCCAACATC+AGG | 0.480177 | 5_4:-4137421 | None:intergenic |
| GGTTAGGGTTCAAGATGAAT+GGG | 0.480528 | 5_4:+4137555 | Msa0831120:CDS |
| AACCGGAATCATGGAACTCC+TGG | 0.483317 | 5_4:+4139299 | Msa0831120:CDS |
| TGATTTCGCTTCTTCGGCAG+TGG | 0.483565 | 5_4:-4139402 | None:intergenic |
| GCAACTTAGGCTTGAGCGAT+GGG | 0.488460 | 5_4:+4139775 | Msa0831120:CDS |
| TCTCTCCTCATTGACATAGT+TGG | 0.488566 | 5_4:+4139816 | Msa0831120:exon |
| ATCTCAGCAAGATGAAAAGA+AGG | 0.497254 | 5_4:+4137516 | Msa0831120:CDS |
| ACAAGAAATAACGAAAATGA+TGG | 0.498843 | 5_4:+4139503 | Msa0831120:CDS |
| TGACAGGATGATGGTAGTAC+TGG | 0.499078 | 5_4:+4139158 | Msa0831120:intron |
| GAGCCGGTGAACCGGAATCA+TGG | 0.503728 | 5_4:+4139290 | Msa0831120:CDS |
| AGTGCCTTATCTTGCATGCA+TGG | 0.506122 | 5_4:-4139236 | None:intergenic |
| AGGCCTCATTGCACTTGTAT+CGG | 0.507145 | 5_4:-4139357 | None:intergenic |
| GAGCGATGGGTTCACAAGGT+TGG | 0.511141 | 5_4:+4139788 | Msa0831120:CDS |
| GTTCCATGATTCCGGTTCAC+CGG | 0.512708 | 5_4:-4139293 | None:intergenic |
| TTGCAGTGTTCAACAAGTAC+AGG | 0.515016 | 5_4:+4139602 | Msa0831120:CDS |
| AGCAACTTAGGCTTGAGCGA+TGG | 0.515958 | 5_4:+4139774 | Msa0831120:CDS |
| AGTAATGAAGAAGTTTCTGA+AGG | 0.528030 | 5_4:+4138656 | Msa0831120:CDS |
| CCCTGTAATCTCCATGACAT+TGG | 0.528548 | 5_4:-4139702 | None:intergenic |
| GGCCTGCTTTGAAGCAACTT+AGG | 0.532572 | 5_4:+4139762 | Msa0831120:CDS |
| AGCCTAAGTTGCTTCAAAGC+AGG | 0.537361 | 5_4:-4139764 | None:intergenic |
| TTGTTAATAAAGATGAAGTC+AGG | 0.541273 | 5_4:+4138714 | Msa0831120:CDS |
| AGAAGGTAAATAATGAAAAG+AGG | 0.542373 | 5_4:-4137177 | None:intergenic |
| TAAAGATGATAATCAGAAAG+AGG | 0.543354 | 5_4:+4137618 | Msa0831120:CDS |
| GAAGGGTGTTGCAAAGAGAA+AGG | 0.548528 | 5_4:+4139649 | Msa0831120:CDS |
| ATATTCACCTTGGTCAAACA+TGG | 0.550722 | 5_4:-4137643 | None:intergenic |
| GGAATAAGTGTGAAGAGGAG+AGG | 0.560247 | 5_4:+4138678 | Msa0831120:CDS |
| CCAATGTCATGGAGATTACA+GGG | 0.563427 | 5_4:+4139702 | Msa0831120:CDS |
| TGAAGGGAATAAGTGTGAAG+AGG | 0.567436 | 5_4:+4138673 | Msa0831120:CDS |
| TTCAACCACGCATAATGAGC+CGG | 0.575278 | 5_4:+4139274 | Msa0831120:CDS |
| TCTTCAACAGTCCAATGTCA+TGG | 0.584453 | 5_4:+4139691 | Msa0831120:CDS |
| GTAATGAAGAAGTTTCTGAA+GGG | 0.585358 | 5_4:+4138657 | Msa0831120:CDS |
| GTGTTCAACACAAACTTTCG+GGG | 0.605811 | 5_4:-4138750 | None:intergenic |
| AACCAATTCCCAACATCAGG+AGG | 0.613775 | 5_4:-4137418 | None:intergenic |
| ATTGAACAATGACAGGATGA+TGG | 0.629600 | 5_4:+4139149 | Msa0831120:intron |
| TGCGCTTCTCTATTACAACC+AGG | 0.639097 | 5_4:-4139317 | None:intergenic |
| TATTCACCTTGGTCAAACAT+GGG | 0.643851 | 5_4:-4137642 | None:intergenic |
| GTTCACCGGCTCATTATGCG+TGG | 0.645544 | 5_4:-4139279 | None:intergenic |
| GAGAAGCTAGTGCAATGTGG+TGG | 0.647484 | 5_4:+4137586 | Msa0831120:CDS |
| AAAGTTTGTGTTGAACACAA+TGG | 0.660009 | 5_4:+4138755 | Msa0831120:CDS |
| AACCAGTTTCTGATATCCGG+AGG | 0.660103 | 5_4:-4138584 | None:intergenic |
| GATATGGACACATACCAGAA+GGG | 0.661804 | 5_4:-4137269 | None:intergenic |
| ATGAGCCAACTATGTCAATG+AGG | 0.668959 | 5_4:-4139821 | None:intergenic |
| AGAGGACCCATGTTTGACCA+AGG | 0.677969 | 5_4:+4137636 | Msa0831120:CDS |
| CCATTGTCATGTGAAAAGAA+GGG | 0.677971 | 5_4:+4139632 | Msa0831120:CDS |
| TGTTCAACACAAACTTTCGG+GGG | 0.687613 | 5_4:-4138749 | None:intergenic |
| ACACCGATACAAGTGCAATG+AGG | 0.733865 | 5_4:+4139354 | Msa0831120:CDS |
| AGAGAGAAGCTAGTGCAATG+TGG | 0.775658 | 5_4:+4137583 | Msa0831120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATGCTATAGAATTT+AGG | - | chr5_4:4139849-4139868 | None:intergenic | 15.0% |
| !!! | TTTCTTTCTTTCTTTCTTTT+AGG | + | chr5_4:4137218-4137237 | Msa0831120:five_prime_UTR | 20.0% |
| !! | TTAACACAAAAACCTAAAAA+AGG | + | chr5_4:4137354-4137373 | Msa0831120:intron | 20.0% |
| !!! | TTTTCAAGTTATAGTGTTAA+TGG | + | chr5_4:4137964-4137983 | Msa0831120:intron | 20.0% |
| !! | AATTGAAAATTTCTTCATGT+AGG | + | chr5_4:4138090-4138109 | Msa0831120:intron | 20.0% |
| !! | TAAGTTTGTCATAAGTTATA+AGG | + | chr5_4:4138166-4138185 | Msa0831120:intron | 20.0% |
| !! | AAGTTTGTCATAAGTTATAA+GGG | + | chr5_4:4138167-4138186 | Msa0831120:intron | 20.0% |
| !!! | TGCTAAAAGTATCTATAATT+TGG | + | chr5_4:4138460-4138479 | Msa0831120:intron | 20.0% |
| !! | AATTGTAAATAATACACCTT+TGG | + | chr5_4:4138848-4138867 | Msa0831120:intron | 20.0% |
| !! | GAGAAAATAAAGAAAAATCT+TGG | + | chr5_4:4139558-4139577 | Msa0831120:CDS | 20.0% |
| ! | AAATAATGAAAAGAGGTTAG+AGG | - | chr5_4:4137173-4137192 | None:intergenic | 25.0% |
| ! | AGAAGGTAAATAATGAAAAG+AGG | - | chr5_4:4137180-4137199 | None:intergenic | 25.0% |
| ! | AGAAAGAAAGAAAAATCAGA+AGG | - | chr5_4:4137207-4137226 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTCTTTTAGGTT+CGG | + | chr5_4:4137223-4137242 | Msa0831120:five_prime_UTR | 25.0% |
| ! | AAACCATTGGAATTGAAATT+AGG | + | chr5_4:4137303-4137322 | Msa0831120:intron | 25.0% |
| ! | ATTCCTAATTTCAATTCCAA+TGG | - | chr5_4:4137309-4137328 | None:intergenic | 25.0% |
| !!! | CAAAAGGAAATTCCTTTTTT+AGG | - | chr5_4:4137369-4137388 | None:intergenic | 25.0% |
| ! | AATCACTAACAGAAATCAAA+AGG | - | chr5_4:4137385-4137404 | None:intergenic | 25.0% |
| ! | TAAAGATGATAATCAGAAAG+AGG | + | chr5_4:4137618-4137637 | Msa0831120:CDS | 25.0% |
| ! | ATTGAGTAAAATATTCACCT+TGG | - | chr5_4:4137656-4137675 | None:intergenic | 25.0% |
| ! | TAAAAGCTTGTGTCTTTATA+AGG | - | chr5_4:4137856-4137875 | None:intergenic | 25.0% |
| !! | TAAAGACACAAGCTTTTATA+AGG | + | chr5_4:4137858-4137877 | Msa0831120:intron | 25.0% |
| !! | AAAGACACAAGCTTTTATAA+GGG | + | chr5_4:4137859-4137878 | Msa0831120:intron | 25.0% |
| ! | AAAGAAGGAAAAAAGAAATC+AGG | + | chr5_4:4138255-4138274 | Msa0831120:intron | 25.0% |
| ! | AAGAAATTTGAAAAGAAGCA+TGG | - | chr5_4:4138439-4138458 | None:intergenic | 25.0% |
| ! | AATTACAAAAAACACAAGCA+AGG | - | chr5_4:4138559-4138578 | None:intergenic | 25.0% |
| ! | TTGTTAATAAAGATGAAGTC+AGG | + | chr5_4:4138714-4138733 | Msa0831120:CDS | 25.0% |
| ! | AATATGCATGATCAGAATTT+AGG | - | chr5_4:4138889-4138908 | None:intergenic | 25.0% |
| ! | GATCATGCATATTTGTAATA+TGG | + | chr5_4:4138896-4138915 | Msa0831120:intron | 25.0% |
| ! | TAACTATCTAATCTACTTCT+AGG | - | chr5_4:4138946-4138965 | None:intergenic | 25.0% |
| ! | TTTACTTTGTGAAAGTTCAT+AGG | + | chr5_4:4139083-4139102 | Msa0831120:intron | 25.0% |
| ! | ATGACTCAATAAATGTTCTT+TGG | + | chr5_4:4139125-4139144 | Msa0831120:intron | 25.0% |
| ! | TGACTCAATAAATGTTCTTT+GGG | + | chr5_4:4139126-4139145 | Msa0831120:intron | 25.0% |
| ! | ATGTTTAGCTAAAAGATTCT+CGG | + | chr5_4:4139463-4139482 | Msa0831120:CDS | 25.0% |
| ! | ACAAGAAATAACGAAAATGA+TGG | + | chr5_4:4139503-4139522 | Msa0831120:CDS | 25.0% |
| ! | TTATAGTACTATTACGTTCA+TGG | - | chr5_4:4139875-4139894 | None:intergenic | 25.0% |
| ! | CGTAATAGTACTATAACATT+AGG | + | chr5_4:4139879-4139898 | Msa0831120:three_prime_UTR | 25.0% |
| ! | AAAAATCAGAAGGTACAAGA+AGG | - | chr5_4:4137197-4137216 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTCTATAAGGATA+TGG | - | chr5_4:4137288-4137307 | None:intergenic | 30.0% |
| TCCTTATAGAACAAAACCAT+TGG | + | chr5_4:4137290-4137309 | Msa0831120:intron | 30.0% | |
| !!! | TCCAATGGTTTTGTTCTATA+AGG | - | chr5_4:4137294-4137313 | None:intergenic | 30.0% |
| GTGAAATTTGAATCCAGATT+GGG | - | chr5_4:4137466-4137485 | None:intergenic | 30.0% | |
| AGTGAAATTTGAATCCAGAT+TGG | - | chr5_4:4137467-4137486 | None:intergenic | 30.0% | |
| AAATTTCACTCTCGAAGAAT+CGG | + | chr5_4:4137477-4137496 | Msa0831120:CDS | 30.0% | |
| !! | AAGCAGATTTTGATAAGGTT+AGG | + | chr5_4:4137539-4137558 | Msa0831120:CDS | 30.0% |
| !! | AGCAGATTTTGATAAGGTTA+GGG | + | chr5_4:4137540-4137559 | Msa0831120:CDS | 30.0% |
| ! | AGATTTGCTTCTGTGATTTA+TGG | - | chr5_4:4137914-4137933 | None:intergenic | 30.0% |
| CACAGAAGCAAATCTAAATT+AGG | + | chr5_4:4137919-4137938 | Msa0831120:intron | 30.0% | |
| ! | AATGGATCATAGTTACTTTC+AGG | + | chr5_4:4137982-4138001 | Msa0831120:intron | 30.0% |
| ! | ATGGATCATAGTTACTTTCA+GGG | + | chr5_4:4137983-4138002 | Msa0831120:intron | 30.0% |
| GGGTTAATATTCCATTTGAT+TGG | + | chr5_4:4138019-4138038 | Msa0831120:intron | 30.0% | |
| TATAGAAGCTAATCTACACT+AGG | + | chr5_4:4138226-4138245 | Msa0831120:intron | 30.0% | |
| GGAAAAAAGAAATCAGGTTA+TGG | + | chr5_4:4138261-4138280 | Msa0831120:intron | 30.0% | |
| AAAAGAAATCAGGTTATGGT+TGG | + | chr5_4:4138265-4138284 | Msa0831120:intron | 30.0% | |
| TTTATTTGTCTTGCAGAATC+TGG | + | chr5_4:4138372-4138391 | Msa0831120:intron | 30.0% | |
| AGTAATGAAGAAGTTTCTGA+AGG | + | chr5_4:4138656-4138675 | Msa0831120:CDS | 30.0% | |
| GTAATGAAGAAGTTTCTGAA+GGG | + | chr5_4:4138657-4138676 | Msa0831120:CDS | 30.0% | |
| TTGTGTTCAACACAAACTTT+CGG | - | chr5_4:4138755-4138774 | None:intergenic | 30.0% | |
| AAAGTTTGTGTTGAACACAA+TGG | + | chr5_4:4138755-4138774 | Msa0831120:CDS | 30.0% | |
| ! | TGGCTCTTTTGATAAAAACA+TGG | + | chr5_4:4138775-4138794 | Msa0831120:CDS | 30.0% |
| ! | CTCTTTTGATAAAAACATGG+AGG | + | chr5_4:4138778-4138797 | Msa0831120:CDS | 30.0% |
| !! | TAGTTAGTTGATGATCTGAT+AGG | + | chr5_4:4138960-4138979 | Msa0831120:intron | 30.0% |
| TAACTGAATGATCTACTTCT+AGG | - | chr5_4:4139037-4139056 | None:intergenic | 30.0% | |
| !! | TTAGTTGATGATGACATGAA+TGG | + | chr5_4:4139054-4139073 | Msa0831120:intron | 30.0% |
| ! | CTGCAAAATCTTTTCCAAAT+GGG | - | chr5_4:4139216-4139235 | None:intergenic | 30.0% |
| !!! | AGTTTTTGATTTCGCTTCTT+CGG | - | chr5_4:4139411-4139430 | None:intergenic | 30.0% |
| AAAAACTGAAATCAAAGCTG+AGG | + | chr5_4:4139424-4139443 | Msa0831120:CDS | 30.0% | |
| TGAATATCAATCTCCCAATC+TGG | + | chr5_4:4137450-4137469 | Msa0831120:CDS | 35.0% | |
| ATCTCAGCAAGATGAAAAGA+AGG | + | chr5_4:4137516-4137535 | Msa0831120:CDS | 35.0% | |
| !! | GAAGGAAGCAGATTTTGATA+AGG | + | chr5_4:4137534-4137553 | Msa0831120:CDS | 35.0% |
| TATTCACCTTGGTCAAACAT+GGG | - | chr5_4:4137645-4137664 | None:intergenic | 35.0% | |
| ATATTCACCTTGGTCAAACA+TGG | - | chr5_4:4137646-4137665 | None:intergenic | 35.0% | |
| GCAAATCTAAATTAGGCTGA+AGG | + | chr5_4:4137926-4137945 | Msa0831120:intron | 35.0% | |
| TTTCAGGGTCATCAAATTTC+AGG | + | chr5_4:4137998-4138017 | Msa0831120:intron | 35.0% | |
| TTCAGGGTCATCAAATTTCA+GGG | + | chr5_4:4137999-4138018 | Msa0831120:intron | 35.0% | |
| ATCTAGACAGTCCAATCAAA+TGG | - | chr5_4:4138033-4138052 | None:intergenic | 35.0% | |
| TACACTAGGCTAAAGAAAGA+AGG | + | chr5_4:4138240-4138259 | Msa0831120:intron | 35.0% | |
| ! | CCATCAAAGTTTTGCTGATA+GGG | + | chr5_4:4138305-4138324 | Msa0831120:intron | 35.0% |
| ! | TTTTTGTAATTCAGAGCCTC+CGG | + | chr5_4:4138568-4138587 | Msa0831120:intron | 35.0% |
| TGTGTTCAACACAAACTTTC+GGG | - | chr5_4:4138754-4138773 | None:intergenic | 35.0% | |
| CACCTTTGGTTAATGATCAA+TGG | + | chr5_4:4138862-4138881 | Msa0831120:intron | 35.0% | |
| GACCATTGATCATTAACCAA+AGG | - | chr5_4:4138867-4138886 | None:intergenic | 35.0% | |
| GGATATTGTTTACTTTGCCA+AGG | + | chr5_4:4138981-4139000 | Msa0831120:intron | 35.0% | |
| AAATGTTTACCTTTGAGCCT+TGG | - | chr5_4:4139001-4139020 | None:intergenic | 35.0% | |
| ATTGAACAATGACAGGATGA+TGG | + | chr5_4:4139149-4139168 | Msa0831120:intron | 35.0% | |
| ! | GCTGCAAAATCTTTTCCAAA+TGG | - | chr5_4:4139217-4139236 | None:intergenic | 35.0% |
| ! | AGAAGCGCATTTAATGTCAT+TGG | + | chr5_4:4139331-4139350 | Msa0831120:CDS | 35.0% |
| !!! | ATGATGGTTTTGTTACAACG+AGG | + | chr5_4:4139519-4139538 | Msa0831120:CDS | 35.0% |
| ! | CACTGCAATAATGTCTTTTC+TGG | - | chr5_4:4139590-4139609 | None:intergenic | 35.0% |
| TCCATTGTCATGTGAAAAGA+AGG | + | chr5_4:4139631-4139650 | Msa0831120:CDS | 35.0% | |
| CCATTGTCATGTGAAAAGAA+GGG | + | chr5_4:4139632-4139651 | Msa0831120:CDS | 35.0% | |
| ! | GATCAGGTTTACGTTTTTGT+GGG | - | chr5_4:4139739-4139758 | None:intergenic | 35.0% |
| AAAAACGTAAACCTGATCGT+GGG | + | chr5_4:4139741-4139760 | Msa0831120:CDS | 35.0% | |
| GATATGGACACATACCAGAA+GGG | - | chr5_4:4137272-4137291 | None:intergenic | 40.0% | |
| AGGTTAGGGTTCAAGATGAA+TGG | + | chr5_4:4137554-4137573 | Msa0831120:CDS | 40.0% | |
| GGTTAGGGTTCAAGATGAAT+GGG | + | chr5_4:4137555-4137574 | Msa0831120:CDS | 40.0% | |
| ! | GCCATCAAAGTTTTGCTGAT+AGG | + | chr5_4:4138304-4138323 | Msa0831120:intron | 40.0% |
| CCCTATCAGCAAAACTTTGA+TGG | - | chr5_4:4138308-4138327 | None:intergenic | 40.0% | |
| GAGAACCAGTTTCTGATATC+CGG | - | chr5_4:4138590-4138609 | None:intergenic | 40.0% | |
| TGAAGGGAATAAGTGTGAAG+AGG | + | chr5_4:4138673-4138692 | Msa0831120:CDS | 40.0% | |
| TGTTCAACACAAACTTTCGG+GGG | - | chr5_4:4138752-4138771 | None:intergenic | 40.0% | |
| GTGTTCAACACAAACTTTCG+GGG | - | chr5_4:4138753-4138772 | None:intergenic | 40.0% | |
| TTTACTTTGCCAAGGCTCAA+AGG | + | chr5_4:4138989-4139008 | Msa0831120:intron | 40.0% | |
| !! | CTTTGGGATTGAACAATGAC+AGG | + | chr5_4:4139142-4139161 | Msa0831120:intron | 40.0% |
| !!! | TGCTTTTGTACTAGCTTTGG+AGG | - | chr5_4:4139380-4139399 | None:intergenic | 40.0% |
| !! | GCATGCTTTTGTACTAGCTT+TGG | - | chr5_4:4139383-4139402 | None:intergenic | 40.0% |
| ! | GCTAAACATGTGTTGATGTC+AGG | - | chr5_4:4139452-4139471 | None:intergenic | 40.0% |
| TTGCAGTGTTCAACAAGTAC+AGG | + | chr5_4:4139602-4139621 | Msa0831120:CDS | 40.0% | |
| ! | CCCTTCTTTTCACATGACAA+TGG | - | chr5_4:4139635-4139654 | None:intergenic | 40.0% |
| GACATTGGACTGTTGAAGAT+TGG | - | chr5_4:4139690-4139709 | None:intergenic | 40.0% | |
| TCTTCAACAGTCCAATGTCA+TGG | + | chr5_4:4139691-4139710 | Msa0831120:CDS | 40.0% | |
| TCCAATGTCATGGAGATTAC+AGG | + | chr5_4:4139701-4139720 | Msa0831120:CDS | 40.0% | |
| CCAATGTCATGGAGATTACA+GGG | + | chr5_4:4139702-4139721 | Msa0831120:CDS | 40.0% | |
| TCATGGAGATTACAGGGAAA+TGG | + | chr5_4:4139708-4139727 | Msa0831120:CDS | 40.0% | |
| ! | CGATCAGGTTTACGTTTTTG+TGG | - | chr5_4:4139740-4139759 | None:intergenic | 40.0% |
| CAAAAACGTAAACCTGATCG+TGG | + | chr5_4:4139740-4139759 | Msa0831120:CDS | 40.0% | |
| TCTCTCCTCATTGACATAGT+TGG | + | chr5_4:4139816-4139835 | Msa0831120:exon | 40.0% | |
| ATGAGCCAACTATGTCAATG+AGG | - | chr5_4:4139824-4139843 | None:intergenic | 40.0% | |
| GGATATGGACACATACCAGA+AGG | - | chr5_4:4137273-4137292 | None:intergenic | 45.0% | |
| ! | TTTTCAGAGCCTCCTGATGT+TGG | + | chr5_4:4137409-4137428 | Msa0831120:intron | 45.0% |
| TTTCAGAGCCTCCTGATGTT+GGG | + | chr5_4:4137410-4137429 | Msa0831120:intron | 45.0% | |
| AACCAATTCCCAACATCAGG+AGG | - | chr5_4:4137421-4137440 | None:intergenic | 45.0% | |
| GAGAACCAATTCCCAACATC+AGG | - | chr5_4:4137424-4137443 | None:intergenic | 45.0% | |
| AGAGAGAAGCTAGTGCAATG+TGG | + | chr5_4:4137583-4137602 | Msa0831120:CDS | 45.0% | |
| AATCTGGATTCTTGCAGCTC+AGG | + | chr5_4:4138388-4138407 | Msa0831120:CDS | 45.0% | |
| AACCAGTTTCTGATATCCGG+AGG | - | chr5_4:4138587-4138606 | None:intergenic | 45.0% | |
| GGAATAAGTGTGAAGAGGAG+AGG | + | chr5_4:4138678-4138697 | Msa0831120:CDS | 45.0% | |
| ! | TGACAGGATGATGGTAGTAC+TGG | + | chr5_4:4139158-4139177 | Msa0831120:intron | 45.0% |
| TATTGCCAGCACTTCCCATT+TGG | + | chr5_4:4139199-4139218 | Msa0831120:CDS | 45.0% | |
| !! | CTTTTCCAAATGGGAAGTGC+TGG | - | chr5_4:4139207-4139226 | None:intergenic | 45.0% |
| AGTGCCTTATCTTGCATGCA+TGG | - | chr5_4:4139239-4139258 | None:intergenic | 45.0% | |
| TTCAACCACGCATAATGAGC+CGG | + | chr5_4:4139274-4139293 | Msa0831120:CDS | 45.0% | |
| AACCAGGAGTTCCATGATTC+CGG | - | chr5_4:4139304-4139323 | None:intergenic | 45.0% | |
| TGCGCTTCTCTATTACAACC+AGG | - | chr5_4:4139320-4139339 | None:intergenic | 45.0% | |
| ACACCGATACAAGTGCAATG+AGG | + | chr5_4:4139354-4139373 | Msa0831120:CDS | 45.0% | |
| AGGCCTCATTGCACTTGTAT+CGG | - | chr5_4:4139360-4139379 | None:intergenic | 45.0% | |
| !! | GAAGGGTGTTGCAAAGAGAA+AGG | + | chr5_4:4139649-4139668 | Msa0831120:CDS | 45.0% |
| CCCTGTAATCTCCATGACAT+TGG | - | chr5_4:4139705-4139724 | None:intergenic | 45.0% | |
| AGCCTAAGTTGCTTCAAAGC+AGG | - | chr5_4:4139767-4139786 | None:intergenic | 45.0% | |
| AGCCTCCTGATGTTGGGAAT+TGG | + | chr5_4:4137416-4137435 | Msa0831120:CDS | 50.0% | |
| GAGAAGCTAGTGCAATGTGG+TGG | + | chr5_4:4137586-4137605 | Msa0831120:CDS | 50.0% | |
| AGAGGACCCATGTTTGACCA+AGG | + | chr5_4:4137636-4137655 | Msa0831120:CDS | 50.0% | |
| AGCTCAGGCACACATTTCTC+TGG | + | chr5_4:4138403-4138422 | Msa0831120:CDS | 50.0% | |
| AGCCTCCGGATATCAGAAAC+TGG | + | chr5_4:4138582-4138601 | Msa0831120:CDS | 50.0% | |
| GCAGCCATGCATGCAAGATA+AGG | + | chr5_4:4139232-4139251 | Msa0831120:CDS | 50.0% | |
| GTTCCATGATTCCGGTTCAC+CGG | - | chr5_4:4139296-4139315 | None:intergenic | 50.0% | |
| AACCGGAATCATGGAACTCC+TGG | + | chr5_4:4139299-4139318 | Msa0831120:CDS | 50.0% | |
| TGATTTCGCTTCTTCGGCAG+TGG | - | chr5_4:4139405-4139424 | None:intergenic | 50.0% | |
| !! | GGCCTGCTTTGAAGCAACTT+AGG | + | chr5_4:4139762-4139781 | Msa0831120:CDS | 50.0% |
| AGCAACTTAGGCTTGAGCGA+TGG | + | chr5_4:4139774-4139793 | Msa0831120:CDS | 50.0% | |
| GCAACTTAGGCTTGAGCGAT+GGG | + | chr5_4:4139775-4139794 | Msa0831120:CDS | 50.0% | |
| !! | GTTCACCGGCTCATTATGCG+TGG | - | chr5_4:4139282-4139301 | None:intergenic | 55.0% |
| CGCATAATGAGCCGGTGAAC+CGG | + | chr5_4:4139282-4139301 | Msa0831120:CDS | 55.0% | |
| TTCAAAGCAGGCCCACGATC+AGG | - | chr5_4:4139755-4139774 | None:intergenic | 55.0% | |
| ! | GCTTGAGCGATGGGTTCACA+AGG | + | chr5_4:4139784-4139803 | Msa0831120:CDS | 55.0% |
| ! | GAGCGATGGGTTCACAAGGT+TGG | + | chr5_4:4139788-4139807 | Msa0831120:CDS | 55.0% |
| TCGTCGTCATCGTGCCCTTC+TGG | + | chr5_4:4137255-4137274 | Msa0831120:CDS | 60.0% | |
| GAGCCGGTGAACCGGAATCA+TGG | + | chr5_4:4139290-4139309 | Msa0831120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 4137164 | 4139926 | 4137164 | ID=Msa0831120;Name=Msa0831120 |
| chr5_4 | mRNA | 4137164 | 4139926 | 4137164 | ID=Msa0831120-mRNA-1;Parent=Msa0831120;Name=Msa0831120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=88|1|1|1|1|1|5|97|395 |
| chr5_4 | exon | 4137164 | 4137276 | 4137164 | ID=Msa0831120-mRNA-1:exon:1626;Parent=Msa0831120-mRNA-1 |
| chr5_4 | exon | 4137416 | 4137657 | 4137416 | ID=Msa0831120-mRNA-1:exon:1627;Parent=Msa0831120-mRNA-1 |
| chr5_4 | exon | 4138388 | 4138424 | 4138388 | ID=Msa0831120-mRNA-1:exon:1628;Parent=Msa0831120-mRNA-1 |
| chr5_4 | exon | 4138582 | 4138799 | 4138582 | ID=Msa0831120-mRNA-1:exon:1629;Parent=Msa0831120-mRNA-1 |
| chr5_4 | exon | 4139164 | 4139926 | 4139164 | ID=Msa0831120-mRNA-1:exon:1630;Parent=Msa0831120-mRNA-1 |
| chr5_4 | five_prime_UTR | 4137164 | 4137251 | 4137164 | ID=Msa0831120-mRNA-1:five_prime_utr;Parent=Msa0831120-mRNA-1 |
| chr5_4 | CDS | 4137252 | 4137276 | 4137252 | ID=Msa0831120-mRNA-1:cds;Parent=Msa0831120-mRNA-1 |
| chr5_4 | CDS | 4137416 | 4137657 | 4137416 | ID=Msa0831120-mRNA-1:cds;Parent=Msa0831120-mRNA-1 |
| chr5_4 | CDS | 4138388 | 4138424 | 4138388 | ID=Msa0831120-mRNA-1:cds;Parent=Msa0831120-mRNA-1 |
| chr5_4 | CDS | 4138582 | 4138799 | 4138582 | ID=Msa0831120-mRNA-1:cds;Parent=Msa0831120-mRNA-1 |
| chr5_4 | CDS | 4139164 | 4139829 | 4139164 | ID=Msa0831120-mRNA-1:cds;Parent=Msa0831120-mRNA-1 |
| chr5_4 | three_prime_UTR | 4139830 | 4139926 | 4139830 | ID=Msa0831120-mRNA-1:three_prime_utr;Parent=Msa0831120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
