AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831760 MtrunA17_Chr5g0394201 99.018 713 7 0 1 713 351 1063 0.0 1469
Msa0831760 MtrunA17_Chr1g0205891 83.821 717 108 4 1 710 364 1079 0.0 1231
Msa0831760 MtrunA17_Chr4g0066651 50.909 550 250 7 1 535 977 1521 0.0 574
Msa0831760 MtrunA17_Chr4g0066741 47.992 523 250 8 4 519 180 687 6.14e-165 502
Msa0831760 MtrunA17_Chr7g0248031 44.605 621 283 8 1 566 982 1596 3.01e-155 497
Msa0831760 MtrunA17_Chr2g0286291 47.228 523 254 8 4 519 183 690 4.10e-154 474
Msa0831760 MtrunA17_Chr8g0348721 46.062 584 259 7 1 530 975 1556 2.35e-151 486
Msa0831760 MtrunA17_Chr5g0403921 44.118 510 248 9 7 491 178 675 1.07e-138 425
Msa0831760 MtrunA17_Chr3g0095091 46.531 490 233 7 1 472 559 1037 3.97e-133 431
Msa0831760 MtrunA17_Chr5g0442141 44.604 556 258 11 1 534 605 1132 2.54e-131 426
Msa0831760 MtrunA17_Chr3g0137091 40.385 572 285 11 5 546 281 826 3.44e-116 380
Msa0831760 MtrunA17_Chr7g0232121 39.959 493 254 11 13 470 39 524 8.73e-111 355
Msa0831760 MtrunA17_Chr4g0052341 41.491 523 260 14 3 503 735 1233 3.19e-108 362
Msa0831760 MtrunA17_Chr1g0163011 36.881 545 241 15 13 473 195 720 4.18e-89 295
Msa0831760 MtrunA17_Chr1g0183681 33.925 507 269 15 16 472 394 884 8.87e-75 262
Msa0831760 MtrunA17_Chr1g0175191 44.108 297 159 3 13 307 521 812 5.18e-73 258
Msa0831760 MtrunA17_Chr1g0175191 55.696 158 69 1 321 478 1061 1217 6.77e-51 192
Msa0831760 MtrunA17_Chr4g0017211 32.821 521 285 13 13 473 1450 1965 7.25e-73 258
Msa0831760 MtrunA17_Chr5g0393461 34.766 512 275 15 13 472 184 688 1.47e-72 253
Msa0831760 MtrunA17_Chr7g0257101 38.585 311 175 4 8 305 573 880 1.53e-69 248
Msa0831760 MtrunA17_Chr7g0257101 50.943 159 77 1 316 474 1186 1343 1.25e-41 164
Msa0831760 MtrunA17_Chr8g0384531 32.588 537 271 18 13 485 384 893 5.60e-68 242
Msa0831760 MtrunA17_Chr7g0231521 48.454 194 87 3 290 470 252 445 3.03e-47 179
Msa0831760 MtrunA17_Chr7g0231521 38.208 212 117 3 13 214 39 246 2.90e-44 170
Msa0831760 MtrunA17_Chr4g0069451 26.923 520 313 18 12 501 173 655 2.99e-35 142
Msa0831760 MtrunA17_Chr4g0040301 37.308 260 137 7 321 558 379 634 1.29e-32 134
Msa0831760 MtrunA17_Chr4g0040301 27.986 293 182 11 41 310 18 304 1.12e-23 106
Msa0831760 MtrunA17_Chr2g0296421 26.186 485 312 16 9 454 507 984 4.05e-30 127
Msa0831760 MtrunA17_Chr1g0168031 27.353 340 180 11 34 324 535 856 9.88e-26 114
Msa0831760 MtrunA17_Chr1g0168031 36.000 150 93 2 317 464 982 1130 1.53e-18 90.9
Msa0831760 MtrunA17_Chr8g0352361 24.330 485 322 16 9 454 357 835 3.54e-25 111
Msa0831760 MtrunA17_Chr7g0232971 27.733 375 208 15 138 473 904 1254 6.68e-25 111
Msa0831760 MtrunA17_Chr1g0190381 36.022 186 106 2 318 490 184 369 5.17e-24 106
Msa0831760 MtrunA17_Chr7g0224051 24.643 560 299 17 30 491 565 1099 1.18e-23 107
Msa0831760 MtrunA17_Chr7g0264371 26.682 431 260 13 61 467 327 725 6.95e-22 101
Msa0831760 MtrunA17_Chr3g0086111 22.908 502 304 17 13 454 187 665 3.33e-21 99.4
Msa0831760 MtrunA17_Chr7g0225791 22.878 542 298 18 5 454 710 1223 9.00e-21 98.2
Msa0831760 MtrunA17_Chr7g0232991 26.866 335 220 9 138 455 272 598 9.38e-21 97.1
Msa0831760 MtrunA17_Chr7g0233031 24.119 539 281 19 12 453 674 1181 1.44e-20 97.4
Msa0831760 MtrunA17_Chr2g0320751 36.029 136 84 2 331 464 859 993 1.65e-20 97.1
Msa0831760 MtrunA17_Chr2g0320751 23.148 432 196 13 12 324 331 745 2.58e-20 96.3
Msa0831760 MtrunA17_Chr7g0233021 26.000 350 203 11 138 453 841 1168 1.93e-20 97.1
Msa0831760 MtrunA17_Chr7g0255821 37.584 149 90 2 318 463 644 792 2.29e-20 96.3
Msa0831760 MtrunA17_Chr7g0255821 26.255 259 157 6 34 272 251 495 3.59e-14 76.3
Msa0831760 MtrunA17_Chr3g0114161 23.956 551 320 18 29 491 691 1230 6.31e-20 95.1
Msa0831760 MtrunA17_Chr5g0437621 24.630 540 317 17 35 491 754 1286 9.23e-20 94.7
Msa0831760 MtrunA17_Chr4g0024921 38.462 130 77 2 335 463 779 906 4.32e-19 92.4
Msa0831760 MtrunA17_Chr4g0039561 44.660 103 52 2 280 377 39 141 1.20e-18 84.7
Msa0831760 MtrunA17_Chr1g0149871 46.067 89 46 1 5 93 236 322 1.41e-17 84.7
Msa0831760 MtrunA17_Chr7g0233001 24.138 348 216 8 138 454 128 458 1.63e-17 86.3
Msa0831760 MtrunA17_Chr1g0212331 38.583 127 75 2 340 464 887 1012 1.82e-17 87.4
Msa0831760 MtrunA17_Chr1g0212331 27.083 192 118 5 130 310 522 702 1.07e-13 75.1
Msa0831760 MtrunA17_Chr4g0047081 23.782 349 216 9 138 454 843 1173 1.84e-17 87.4
Msa0831760 MtrunA17_Chr2g0281601 37.008 127 77 2 338 463 1148 1272 6.96e-17 85.5
Msa0831760 MtrunA17_Chr1g0191141 23.358 548 322 16 29 491 551 1085 1.14e-16 84.7
Msa0831760 MtrunA17_Chr1g0190391 29.204 226 123 8 5 199 576 795 7.71e-15 78.6
Msa0831760 MtrunA17_Chr2g0320781 33.333 120 75 2 340 454 111 230 1.43e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831760 AT3G06010.1 74.162 716 174 4 1 711 391 1100 0.0 1075
Msa0831760 AT5G19310.2 70.042 711 184 6 1 708 110 794 0.0 1013
Msa0831760 AT5G19310.1 70.042 711 184 6 1 708 374 1058 0.0 1012
Msa0831760 AT2G28290.6 51.630 552 243 10 1 535 743 1287 4.98e-176 559
Msa0831760 AT2G28290.2 51.630 552 243 10 1 535 742 1286 5.17e-176 559
Msa0831760 AT2G28290.1 51.630 552 243 10 1 535 742 1286 8.07e-176 558
Msa0831760 AT2G28290.5 51.630 552 243 10 1 535 743 1287 8.15e-176 558
Msa0831760 AT2G28290.3 51.630 552 243 10 1 535 742 1286 8.21e-176 558
Msa0831760 AT2G28290.4 51.630 552 243 10 1 535 742 1286 8.21e-176 558
Msa0831760 AT2G46020.5 45.066 608 274 8 1 554 969 1570 1.55e-154 495
Msa0831760 AT2G46020.1 45.066 608 274 8 1 554 969 1570 1.55e-154 495
Msa0831760 AT2G46020.6 45.066 608 274 8 1 554 969 1570 1.55e-154 495
Msa0831760 AT2G46020.2 44.901 608 276 7 1 554 969 1571 3.95e-154 494
Msa0831760 AT2G46020.3 44.901 608 276 7 1 554 969 1571 3.95e-154 494
Msa0831760 AT2G46020.4 44.901 608 276 7 1 554 969 1571 3.95e-154 494
Msa0831760 AT3G06400.1 47.036 523 255 8 4 519 181 688 6.86e-154 474
Msa0831760 AT3G06400.2 47.036 523 255 8 4 519 181 688 6.95e-154 474
Msa0831760 AT3G06400.3 47.036 523 255 8 4 519 181 688 1.00e-153 473
Msa0831760 AT5G18620.1 47.238 525 251 9 4 519 186 693 1.70e-153 473
Msa0831760 AT5G18620.2 47.238 525 251 9 4 519 186 693 1.75e-153 473
Msa0831760 AT5G66750.1 43.925 535 273 11 7 518 196 726 2.85e-136 419
Msa0831760 AT2G13370.1 46.708 486 232 6 3 472 615 1089 2.63e-130 423
Msa0831760 AT2G13370.2 46.708 486 232 6 3 472 615 1089 2.63e-130 423
Msa0831760 AT2G13370.3 46.708 486 232 6 3 472 615 1089 2.63e-130 423
Msa0831760 AT2G25170.1 41.412 524 258 10 5 500 266 768 6.68e-116 380
Msa0831760 AT2G25170.4 41.412 524 258 10 5 500 266 768 6.68e-116 380
Msa0831760 AT2G25170.2 41.412 524 258 10 5 500 283 785 9.32e-116 379
Msa0831760 AT2G25170.3 41.412 524 258 10 5 500 292 794 1.09e-115 379
Msa0831760 AT2G44980.3 38.824 510 282 7 13 494 51 558 2.54e-112 360
Msa0831760 AT2G44980.1 40.524 496 275 9 13 494 51 540 3.43e-112 359
Msa0831760 AT2G44980.2 38.552 511 283 8 13 494 51 559 6.51e-110 353
Msa0831760 AT5G44800.1 40.341 528 271 11 1 507 677 1181 3.68e-105 353
Msa0831760 AT4G31900.1 40.625 512 253 14 5 500 218 694 6.87e-104 344
Msa0831760 AT4G31900.2 40.625 512 253 14 5 500 177 653 7.00e-104 343
Msa0831760 AT4G31900.3 40.625 512 253 14 5 500 218 694 8.29e-104 343
Msa0831760 AT2G02090.1 36.929 547 242 14 13 475 213 740 5.69e-90 298
Msa0831760 AT3G12810.1 44.444 306 166 3 2 307 526 827 2.66e-74 263
Msa0831760 AT3G12810.1 53.797 158 72 1 321 478 1074 1230 3.88e-48 184
Msa0831760 AT3G12810.2 44.444 306 166 3 2 307 522 823 2.86e-74 263
Msa0831760 AT3G12810.2 53.797 158 72 1 321 478 1070 1226 4.06e-48 184
Msa0831760 AT2G18760.4 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT2G18760.1 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT2G18760.2 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT2G18760.7 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT2G18760.5 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT2G18760.6 32.475 505 277 12 16 472 388 876 9.96e-74 259
Msa0831760 AT3G54280.1 33.588 524 280 14 12 473 1450 1967 1.22e-73 261
Msa0831760 AT3G19210.3 34.774 509 279 15 13 472 180 684 1.53e-73 254
Msa0831760 AT3G19210.2 34.911 507 279 14 13 472 180 682 2.03e-73 256
Msa0831760 AT3G54280.2 33.588 524 280 14 12 473 1481 1998 2.57e-73 260
Msa0831760 AT2G18760.3 32.475 505 277 12 16 472 447 935 2.80e-73 259
Msa0831760 AT3G19210.1 34.774 509 279 15 13 472 180 684 5.83e-73 254
Msa0831760 AT3G57300.1 37.812 320 183 4 2 308 575 891 9.70e-69 246
Msa0831760 AT3G57300.1 52.597 154 72 1 321 474 1205 1357 1.92e-41 164
Msa0831760 AT3G57300.4 37.812 320 183 4 2 308 575 891 9.70e-69 246
Msa0831760 AT3G57300.4 52.597 154 72 1 321 474 1205 1357 1.92e-41 164
Msa0831760 AT3G57300.3 37.812 320 183 4 2 308 575 891 1.18e-68 245
Msa0831760 AT5G63950.1 32.849 551 267 20 13 489 377 898 2.31e-68 243
Msa0831760 AT5G63950.2 32.657 542 263 19 13 489 377 881 4.74e-65 234
Msa0831760 AT3G57300.2 34.278 353 183 4 2 308 575 924 2.21e-64 233
Msa0831760 AT3G57300.2 52.597 154 72 1 321 474 1238 1390 2.01e-41 163
Msa0831760 AT1G03750.1 31.769 277 167 7 16 276 142 412 9.59e-36 145
Msa0831760 AT1G03750.1 43.915 189 100 4 318 504 524 708 2.57e-33 137
Msa0831760 AT1G48310.2 26.458 480 298 15 5 464 170 614 7.47e-34 138
Msa0831760 AT1G48310.3 26.458 480 298 15 5 464 165 609 8.20e-34 138
Msa0831760 AT1G48310.1 26.458 480 298 15 5 464 165 609 8.40e-34 138
Msa0831760 AT5G43530.1 27.000 400 187 14 3 310 607 993 3.71e-26 115
Msa0831760 AT5G43530.1 36.667 150 90 3 319 464 1106 1254 3.39e-20 96.7
Msa0831760 AT2G21450.2 25.388 516 307 14 12 463 271 772 2.94e-24 109
Msa0831760 AT2G21450.1 25.388 516 307 14 12 463 264 765 3.88e-24 108
Msa0831760 AT2G21450.3 25.577 520 301 15 12 463 173 674 4.45e-24 108
Msa0831760 AT2G16390.2 25.889 506 294 20 9 454 349 833 7.37e-24 108
Msa0831760 AT2G16390.1 25.889 506 294 20 9 454 346 830 8.15e-24 107
Msa0831760 AT1G08600.4 41.463 164 83 3 321 471 1114 1277 1.30e-23 107
Msa0831760 AT1G08600.4 25.449 334 196 11 11 302 717 1039 6.81e-18 89.4
Msa0831760 AT1G08600.3 41.463 164 83 3 321 471 1114 1277 1.30e-23 107
Msa0831760 AT1G08600.3 25.449 334 196 11 11 302 717 1039 6.81e-18 89.4
Msa0831760 AT1G08600.2 41.463 164 83 3 321 471 1114 1277 1.30e-23 107
Msa0831760 AT1G08600.2 25.449 334 196 11 11 302 717 1039 6.81e-18 89.4
Msa0831760 AT1G08600.1 41.463 164 83 3 321 471 1093 1256 1.31e-23 107
Msa0831760 AT1G08600.1 25.312 320 193 9 11 302 717 1018 3.09e-19 93.6
Msa0831760 AT5G22750.1 37.671 146 88 2 321 464 862 1006 2.07e-23 106
Msa0831760 AT5G22750.1 24.000 425 198 11 12 324 347 758 6.16e-23 105
Msa0831760 AT1G05490.1 26.331 338 217 7 138 453 1008 1335 4.44e-21 99.4
Msa0831760 AT5G05130.1 38.211 123 75 1 342 463 729 851 4.13e-20 95.9
Msa0831760 AT5G20420.1 22.682 507 297 15 29 454 707 1199 2.68e-18 90.5
Msa0831760 AT3G16600.1 29.032 279 139 10 5 240 46 308 7.98e-18 88.2
Msa0831760 AT1G05120.2 36.434 129 81 1 335 463 720 847 1.12e-17 88.2
Msa0831760 AT1G05120.1 36.434 129 81 1 335 463 677 804 1.19e-17 88.2
Msa0831760 AT1G11100.5 36.641 131 78 3 337 464 927 1055 1.38e-17 88.2
Msa0831760 AT1G11100.5 24.646 353 185 13 16 302 402 739 5.17e-16 83.2
Msa0831760 AT1G11100.3 36.641 131 78 3 337 464 971 1099 1.38e-17 88.2
Msa0831760 AT1G11100.1 36.641 131 78 3 337 464 1070 1198 1.62e-17 87.8
Msa0831760 AT1G11100.1 24.646 353 185 13 16 302 545 882 3.17e-16 84.0
Msa0831760 AT1G11100.2 36.641 131 78 3 337 464 1113 1241 1.64e-17 87.8
Msa0831760 AT1G11100.4 36.641 131 78 3 337 464 1114 1242 1.70e-17 87.8
Msa0831760 AT1G02670.1 28.313 332 172 15 13 304 134 439 3.03e-17 86.7
Msa0831760 AT1G02670.1 37.600 125 75 2 340 463 527 649 2.09e-16 84.0
Msa0831760 AT1G02670.7 28.313 332 172 15 13 304 123 428 4.32e-17 85.9
Msa0831760 AT1G02670.7 37.600 125 75 2 340 463 516 638 2.21e-16 83.6
Msa0831760 AT1G02670.3 37.600 125 75 2 340 463 539 661 1.61e-16 84.3
Msa0831760 AT1G02670.3 25.779 353 177 14 13 304 123 451 2.88e-16 83.6
Msa0831760 AT3G24340.1 22.465 503 300 17 13 447 577 1057 1.70e-16 84.7
Msa0831760 AT1G02670.6 37.600 125 75 2 340 463 512 634 1.91e-16 84.0
Msa0831760 AT1G02670.6 25.706 354 176 14 13 304 96 424 3.02e-16 83.2
Msa0831760 AT1G50410.2 39.062 128 73 3 340 464 828 953 1.91e-16 84.3
Msa0831760 AT1G50410.2 25.654 191 121 4 126 305 462 642 3.63e-12 70.5
Msa0831760 AT1G50410.1 39.062 128 73 3 340 464 828 953 1.91e-16 84.3
Msa0831760 AT1G50410.1 25.654 191 121 4 126 305 462 642 3.63e-12 70.5
Msa0831760 AT1G50410.3 39.062 128 73 3 340 464 828 953 1.91e-16 84.3
Msa0831760 AT1G50410.3 25.654 191 121 4 126 305 462 642 3.63e-12 70.5
Msa0831760 AT1G61140.3 34.351 131 83 2 334 463 961 1089 2.06e-16 84.3
Msa0831760 AT1G61140.3 26.702 191 119 5 130 309 624 804 3.58e-11 67.4
Msa0831760 AT1G02670.4 26.027 365 184 15 1 304 112 451 2.89e-16 82.8
Msa0831760 AT1G61140.1 34.351 131 83 2 334 463 1119 1247 2.91e-16 84.0
Msa0831760 AT1G61140.1 26.702 191 119 5 130 309 782 962 3.16e-11 67.8
Msa0831760 AT1G02670.5 26.027 365 184 15 1 304 85 424 3.45e-16 83.2
Msa0831760 AT1G02670.5 37.736 106 63 2 340 444 512 615 3.33e-14 76.6
Msa0831760 AT1G02670.2 26.027 365 184 15 1 304 112 451 3.79e-16 82.8
Msa0831760 AT1G02670.2 37.736 106 63 2 340 444 539 642 3.38e-14 76.6
Msa0831760 AT3G20010.3 37.600 125 75 2 340 463 628 750 3.85e-16 83.2
Msa0831760 AT3G20010.2 37.600 125 75 2 340 463 603 725 3.95e-16 83.2
Msa0831760 AT3G20010.1 37.600 125 75 2 340 463 894 1016 4.04e-16 83.2
Msa0831760 AT3G20010.5 37.600 125 75 2 340 463 894 1016 4.04e-16 83.2
Msa0831760 AT3G20010.7 37.600 125 75 2 340 463 894 1016 4.04e-16 83.2
Msa0831760 AT1G48310.4 27.206 272 165 10 5 261 165 418 2.29e-14 77.0
Msa0831760 AT3G42670.4 29.670 182 108 4 340 501 1076 1257 9.44e-12 69.3
Msa0831760 AT3G42670.2 29.670 182 108 4 340 501 1074 1255 9.76e-12 69.3
Msa0831760 AT3G42670.3 29.670 182 108 4 340 501 1074 1255 9.76e-12 69.3
Msa0831760 AT3G42670.1 29.670 182 108 4 340 501 1074 1255 9.76e-12 69.3
Msa0831760 AT5G07810.1 26.455 189 118 5 13 193 204 379 5.00e-11 67.0

Find 184 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTGGTTCAAATATT+TGG 0.043500 5_4:-4789384 None:intergenic
TATCCTTGATTTCATGTTTA+TGG 0.066169 5_4:-4789188 None:intergenic
CAAATATTTGGGAAAATTTC+TGG 0.106945 5_4:-4789372 None:intergenic
TAACAACTTAAATGGAATTT+TGG 0.134286 5_4:+4785051 Msa0831760:CDS
CAAAGGCTGTTCTGCCAAAT+TGG 0.141417 5_4:+4785173 Msa0831760:CDS
TTGTTTAATAACAACTTAAA+TGG 0.190073 5_4:+4785043 Msa0831760:CDS
CCCGATCAGATGAGGAATTT+TGG 0.212503 5_4:+4788743 Msa0831760:CDS
TATAAATTTCTTAGACTTGA+TGG 0.241436 5_4:+4787533 Msa0831760:CDS
GCGAACTCGTTGACCCAATT+TGG 0.250076 5_4:-4785187 None:intergenic
TCCTGCAGGCTGTTCTGAAT+TGG 0.251991 5_4:-4786299 None:intergenic
ATCCTTGATTTCATGTTTAT+GGG 0.272191 5_4:-4789187 None:intergenic
TTTGACAGCAGTGCTGTTAC+TGG 0.285191 5_4:+4788889 Msa0831760:CDS
GGTATACTCGGCACTAAATA+AGG 0.290483 5_4:+4788849 Msa0831760:CDS
AGAACTTGGTTCAAATATTT+GGG 0.290949 5_4:-4789383 None:intergenic
TGACCAGCTCTACGGAGTTT+TGG 0.291315 5_4:-4787440 None:intergenic
TGAACTGAATTGAAAATGTT+TGG 0.299548 5_4:-4786350 None:intergenic
CCAACATTTCTCTTCTGTCC+TGG 0.303549 5_4:-4788645 None:intergenic
CAATTTGGCAGAACAGCCTT+TGG 0.309438 5_4:-4785172 None:intergenic
TTATAATCTTTGACAGTGAT+TGG 0.309963 5_4:+4787684 Msa0831760:CDS
GAGGAGATCGTCAGAGCATC+AGG 0.326426 5_4:+4787389 Msa0831760:CDS
TTCGTTGATAGCACATCTTA+TGG 0.327282 5_4:+4785111 Msa0831760:CDS
CAGCTTGTTGATCCATTTGT+GGG 0.330204 5_4:-4787709 None:intergenic
GCAATAAAGGAAGAAATATC+AGG 0.332857 5_4:+4785391 Msa0831760:CDS
GAGCATTGAATTTCTTTAGA+AGG 0.333137 5_4:-4787583 None:intergenic
CCTGCAGGCTGTTCTGAATT+GGG 0.337382 5_4:-4786298 None:intergenic
CTCAAAAGAAACATAAAATA+TGG 0.341229 5_4:-4787614 None:intergenic
TTCATGCTTGAACCTCTTAG+AGG 0.342322 5_4:-4789154 None:intergenic
AGCACTCGTGCCGGAGGTCT+TGG 0.343590 5_4:+4787635 Msa0831760:CDS
TAATTGTTCTTCATCTGTTA+AGG 0.351041 5_4:-4786423 None:intergenic
GGATGAGAGGAAAGCAATAA+AGG 0.356920 5_4:+4785378 Msa0831760:CDS
TCCACTGGAGCCCTTCTATC+TGG 0.361624 5_4:-4785012 None:intergenic
ATCCATTGAAGAGGTGATAT+TGG 0.364015 5_4:+4787796 Msa0831760:CDS
CTTCATACTACGAAGGAAAA+AGG 0.367311 5_4:+4786558 Msa0831760:CDS
CAACATTTCTCTTCTGTCCT+GGG 0.367967 5_4:-4788644 None:intergenic
TCCATTTGAATTCTGCCCTC+TGG 0.387404 5_4:-4789304 None:intergenic
TTAAGACCATACCAGATAGA+AGG 0.390339 5_4:+4785001 Msa0831760:CDS
TCTCCGCCTTGAAGCATAGA+TGG 0.394799 5_4:-4784977 None:intergenic
AACATAAAATATGGTGAGTC+AGG 0.399420 5_4:-4787605 None:intergenic
GAGGTAGAAAAGTTTCTTCC+TGG 0.401155 5_4:+4786583 Msa0831760:CDS
AGATACTACCAAGTTCCTTC+TGG 0.405687 5_4:+4789463 Msa0831760:three_prime_UTR
GAACTGAATTGAAAATGTTT+GGG 0.406126 5_4:-4786349 None:intergenic
TCAGCTTGTTGATCCATTTG+TGG 0.409812 5_4:-4787710 None:intergenic
GATTATTCGCCGTCTGCATC+AGG 0.421572 5_4:+4786448 Msa0831760:CDS
AGGATCGAGCCCATCGCATT+GGG 0.428515 5_4:+4787732 Msa0831760:CDS
TAGCAAGAACCCTGGACAAC+AGG 0.433497 5_4:+4785545 Msa0831760:CDS
CAGTTCAAAATTTCGAGGAC+TGG 0.435401 5_4:+4786366 Msa0831760:CDS
TGCTTGAACCTCTTAGAGGC+AGG 0.435562 5_4:-4789150 None:intergenic
AAAGGCTGTTCTGCCAAATT+GGG 0.437095 5_4:+4785174 Msa0831760:CDS
TTGGCTGATGAAATGGGGCT+TGG 0.440597 5_4:+4785070 Msa0831760:CDS
CCAAAATTCCTCATCTGATC+GGG 0.448047 5_4:-4788743 None:intergenic
AGCACTGCTGTCAAAAGCTT+TGG 0.450510 5_4:-4788881 None:intergenic
GGAACGTGCTAAACAAAAGA+TGG 0.450637 5_4:+4787817 Msa0831760:CDS
CGTAGAGGTAGCAGCTCACT+TGG 0.451293 5_4:+4788679 Msa0831760:CDS
AGAGAATGGATGAAGATAGA+AGG 0.453244 5_4:+4788773 Msa0831760:CDS
GTGACCGACGTGGGCAGAGT+TGG 0.454104 5_4:+4786667 Msa0831760:CDS
TAACCATCCCTACCTCTTTG+TGG 0.455021 5_4:+4787343 Msa0831760:CDS
ATGAGAACGAACTGCCAGAT+TGG 0.458830 5_4:+4788827 Msa0831760:CDS
CTGTTGACGTTGTATTGAAA+AGG 0.458968 5_4:-4787868 None:intergenic
ATGGAATACAAGGGTGTGAC+TGG 0.459958 5_4:+4785130 Msa0831760:CDS
AAACATGAAATCAAGGATAC+AGG 0.460250 5_4:+4789192 Msa0831760:CDS
ACTGGCCATACCTGTTGTCC+AGG 0.460656 5_4:-4785555 None:intergenic
AAGATCAAGCTATCCTAGCC+AGG 0.464234 5_4:+4789266 Msa0831760:CDS
GTTTCTTCCTGGTAAATCTC+AGG 0.466003 5_4:+4786594 Msa0831760:CDS
ATTTGATCTTTCATTTCCCA+TGG 0.467166 5_4:-4789106 None:intergenic
AAGATGTGCTATCAACGAAA+TGG 0.468227 5_4:-4785107 None:intergenic
GCCAGAGGGCAGAATTCAAA+TGG 0.471047 5_4:+4789303 Msa0831760:CDS
TTCCCATAAACATGAAATCA+AGG 0.474668 5_4:+4789185 Msa0831760:CDS
GGATGAAGATAGAAGGCAAA+AGG 0.476406 5_4:+4788780 Msa0831760:CDS
TACAACAGCCAGAAGGAACT+TGG 0.477035 5_4:-4789471 None:intergenic
TGACCGACGTGGGCAGAGTT+GGG 0.478099 5_4:+4786668 Msa0831760:CDS
GCCAAAATTCCTCATCTGAT+CGG 0.480869 5_4:-4788744 None:intergenic
AGCATTGAATTTCTTTAGAA+GGG 0.481468 5_4:-4787582 None:intergenic
TTCCAATATCACCTCTTCAA+TGG 0.482736 5_4:-4787798 None:intergenic
GGCACTAAATAAGGATGAAA+AGG 0.484886 5_4:+4788858 Msa0831760:CDS
GTTTGTGCATGGCTGTCGAT+AGG 0.488637 5_4:-4789036 None:intergenic
CAAGAATTAAAAGCAGAACT+TGG 0.489488 5_4:-4789397 None:intergenic
GAGCAACCATCTATGCTTCA+AGG 0.490052 5_4:+4784971 Msa0831760:CDS
GAGGATCGAGCCCATCGCAT+TGG 0.490072 5_4:+4787731 Msa0831760:CDS
GTATCTAATTCTTCAGCTAA+AGG 0.491976 5_4:+4788994 Msa0831760:CDS
TTGTATTGAAAAGGCCAGCC+TGG 0.492600 5_4:-4787859 None:intergenic
TGAGAACGAACTGCCAGATT+GGG 0.492940 5_4:+4788828 Msa0831760:CDS
TGGAGCCCTTCTATCTGGTA+TGG 0.494849 5_4:-4785007 None:intergenic
CGGTTAATTTCTCTCTCGCT+TGG 0.498484 5_4:-4788712 None:intergenic
AGTTCGCAACATGGGCTCCT+AGG 0.498642 5_4:+4785203 Msa0831760:CDS
CAGTGATTGGAACCCACAAA+TGG 0.499752 5_4:+4787697 Msa0831760:CDS
TTGATAATATACTTTCTGCC+AGG 0.502014 5_4:-4786641 None:intergenic
AACCATCCCTACCTCTTTGT+GGG 0.504206 5_4:+4787344 Msa0831760:CDS
TTCACAAATGACTCGCCTCA+TGG 0.507367 5_4:+4787478 Msa0831760:CDS
TAGAAGGGAACCTCTTTCCT+CGG 0.510264 5_4:-4787567 None:intergenic
TCGCCTCATGGACATTCTTG+AGG 0.511182 5_4:+4787490 Msa0831760:CDS
AGTGCCGAGTATACCCAATC+TGG 0.512810 5_4:-4788841 None:intergenic
AAGGCCAGCCTGGATGACTT+TGG 0.513659 5_4:-4787849 None:intergenic
ATGACACCGGGGCAGAAGAA+AGG 0.513836 5_4:+4789064 Msa0831760:CDS
GGCAGAGTTGGGTTAGACTA+CGG 0.514429 5_4:+4786679 Msa0831760:CDS
TTGGGAGGAGAAAATTGAGC+AGG 0.515519 5_4:-4786331 None:intergenic
AGCACATCTTATGGAATACA+AGG 0.516140 5_4:+4785120 Msa0831760:CDS
TAACAACCTTTCTTCTGCCC+CGG 0.520256 5_4:-4789070 None:intergenic
ATCAAGGATACAGGTGTAAG+TGG 0.521229 5_4:+4789201 Msa0831760:CDS
CACAAACGAGTGATGACACC+GGG 0.523416 5_4:+4789052 Msa0831760:CDS
CAATTCAGTTCAAAATTTCG+AGG 0.523746 5_4:+4786361 Msa0831760:CDS
CTTCCAAAACTCCGTAGAGC+TGG 0.529601 5_4:+4787437 Msa0831760:CDS
CTGCAGGCTGTTCTGAATTG+GGG 0.530216 5_4:-4786297 None:intergenic
CCATCGCATTGGGCAAAAGA+AGG 0.530457 5_4:+4787742 Msa0831760:CDS
CATTTCTGAAGAAAATCCAT+TGG 0.530875 5_4:+4785470 Msa0831760:CDS
AAATACTTGATTGTTGATGA+AGG 0.531356 5_4:+4785493 Msa0831760:CDS
CCAGGACAGAAGAGAAATGT+TGG 0.532850 5_4:+4788645 Msa0831760:CDS
GAACTACAGATCTCGTCTCA+TGG 0.533119 5_4:+4788804 Msa0831760:CDS
CCCAATTCAGAACAGCCTGC+AGG 0.537613 5_4:+4786298 Msa0831760:CDS
TTTGTGCATGGCTGTCGATA+GGG 0.544193 5_4:-4789035 None:intergenic
CAACAATCAAGTATTTCCAA+TGG 0.545656 5_4:-4785486 None:intergenic
GCTGTTCTGAATTGGGGTAC+CGG 0.546084 5_4:-4786291 None:intergenic
CAAGTTCAAACCAAGACCTC+CGG 0.546459 5_4:-4787645 None:intergenic
CAATAAAGGAAGAAATATCA+GGG 0.553923 5_4:+4785392 Msa0831760:CDS
AAGGAAGAAATATCAGGGGA+GGG 0.554490 5_4:+4785397 Msa0831760:CDS
AGAACTTGACAATGCAACTC+AGG 0.555428 5_4:+4787312 Msa0831760:CDS
CTTGAACCTCTTAGAGGCAG+GGG 0.555779 5_4:-4789148 None:intergenic
CACATCAACTCGATCTGCAA+AGG 0.559095 5_4:-4786399 None:intergenic
AGAACAGCCTGCAGGAATTG+TGG 0.560323 5_4:+4786306 Msa0831760:CDS
CCTCATCTGATCGGGCTGCA+AGG 0.561044 5_4:-4788735 None:intergenic
AATTGATGCCAAAGTCATCC+AGG 0.563723 5_4:+4787841 Msa0831760:CDS
ACATCAACTCGATCTGCAAA+GGG 0.565387 5_4:-4786398 None:intergenic
ACCAGATAGAAGGGCTCCAG+TGG 0.566203 5_4:+4785011 Msa0831760:CDS
AAACTATGATATATATCGTA+GGG 0.566366 5_4:+4787367 Msa0831760:CDS
GAACGAAGACTTCTGTTGAC+CGG 0.567326 5_4:+4786272 Msa0831760:CDS
AGGAAGAAATATCAGGGGAG+GGG 0.567503 5_4:+4785398 Msa0831760:CDS
TGTCATCACTCGTTTGTGCA+TGG 0.572027 5_4:-4789047 None:intergenic
GAACGTGCTAAACAAAAGAT+GGG 0.572652 5_4:+4787818 Msa0831760:CDS
ATAGTTTCCCACAAAGAGGT+AGG 0.573917 5_4:-4787351 None:intergenic
TCAAATGTGACATGTCAGCC+TGG 0.575696 5_4:+4786623 Msa0831760:CDS
GGACAGAAGAGAAATGTTGG+AGG 0.577213 5_4:+4788648 Msa0831760:CDS
AAGCGATCTACAATGGATGA+AGG 0.580059 5_4:+4788951 Msa0831760:CDS
TAAACAAAGAAAGCATCCAC+TGG 0.581338 5_4:-4785027 None:intergenic
TCTACAATGGATGAAGGCTG+TGG 0.582081 5_4:+4788957 Msa0831760:CDS
GCAGGGACCACAATTCCTGC+AGG 0.582932 5_4:-4786313 None:intergenic
GCTTGAACCTCTTAGAGGCA+GGG 0.583334 5_4:-4789149 None:intergenic
ATGATGGACGAATGGATGAG+AGG 0.585677 5_4:+4785365 Msa0831760:CDS
TAAGACCATACCAGATAGAA+GGG 0.587419 5_4:+4785002 Msa0831760:CDS
TTCCCACAAAGAGGTAGGGA+TGG 0.588698 5_4:-4787346 None:intergenic
ACTCATGATTCTTCAATCGA+TGG 0.590065 5_4:-4785516 None:intergenic
GAAACTATGATATATATCGT+AGG 0.594875 5_4:+4787366 Msa0831760:CDS
CTGAATTGAAAATGTTTGGG+AGG 0.595327 5_4:-4786346 None:intergenic
TAGTTTCCCACAAAGAGGTA+GGG 0.596066 5_4:-4787350 None:intergenic
TCAGATAATGAACCCTGGCT+AGG 0.598167 5_4:-4789279 None:intergenic
GATGCCAAAGTCATCCAGGC+TGG 0.600829 5_4:+4787845 Msa0831760:CDS
AGATCAAGCTATCCTAGCCA+GGG 0.602473 5_4:+4789267 Msa0831760:CDS
TATCATAGTTTCCCACAAAG+AGG 0.602654 5_4:-4787355 None:intergenic
GGACTCTATGACCAGCTCTA+CGG 0.607340 5_4:-4787448 None:intergenic
GGTCAACGAGTTCGCAACAT+GGG 0.611233 5_4:+4785195 Msa0831760:CDS
TGGATGAAGGCTGTGGAAAG+CGG 0.612534 5_4:+4788964 Msa0831760:CDS
ATACGTTAAGCGATCTACAA+TGG 0.616877 5_4:+4788944 Msa0831760:CDS
CCTTGCAGCCCGATCAGATG+AGG 0.620104 5_4:+4788735 Msa0831760:CDS
AAAGGAAGAAATATCAGGGG+AGG 0.620434 5_4:+4785396 Msa0831760:CDS
TTGGAGGAGATTATGCGTAG+AGG 0.621633 5_4:+4788664 Msa0831760:CDS
GTGCATGGCTGTCGATAGGG+AGG 0.623872 5_4:-4789032 None:intergenic
TGGGAGGAGAAAATTGAGCA+GGG 0.625401 5_4:-4786330 None:intergenic
ACTGCCAGATTGGGTATACT+CGG 0.627265 5_4:+4788837 Msa0831760:CDS
CATCTGATCGGGCTGCAAGG+CGG 0.628489 5_4:-4788732 None:intergenic
AGAAACTCACCTGATGCAGA+CGG 0.630220 5_4:-4786457 None:intergenic
AGTATGACCTGAGATTTACC+AGG 0.630949 5_4:-4786601 None:intergenic
TTAGAGTTAAGCAACACCAT+GGG 0.631285 5_4:+4789090 Msa0831760:CDS
GGGTCAACGAGTTCGCAACA+TGG 0.634690 5_4:+4785194 Msa0831760:CDS
GTTAGAGTTAAGCAACACCA+TGG 0.634975 5_4:+4789089 Msa0831760:CDS
CTGGCCATACCTGTTGTCCA+GGG 0.635351 5_4:-4785554 None:intergenic
AGGAGATCGTCAGAGCATCA+GGG 0.641644 5_4:+4787390 Msa0831760:CDS
AAAGCGGACAAGAAAAGAAG+TGG 0.641891 5_4:+4788912 Msa0831760:CDS
GTTCATTATCTGATGCCAGA+GGG 0.643528 5_4:+4789289 Msa0831760:CDS
ATAAAATTACAACAGCCAGA+AGG 0.651979 5_4:-4789478 None:intergenic
ACAAATGGATCAACAAGCTG+AGG 0.655715 5_4:+4787712 Msa0831760:CDS
TAGTGTGGGATCCATTGAAG+AGG 0.656768 5_4:+4787787 Msa0831760:CDS
TGGCATCAGATAATGAACCC+TGG 0.658365 5_4:-4789284 None:intergenic
GCAGTGCTGTTACTGGAAAG+CGG 0.670287 5_4:+4788896 Msa0831760:CDS
TAAGGCCCTTCATACTACGA+AGG 0.675584 5_4:+4786551 Msa0831760:CDS
GCACAAACGAGTGATGACAC+CGG 0.682695 5_4:+4789051 Msa0831760:CDS
GGTTCATTATCTGATGCCAG+AGG 0.683066 5_4:+4789288 Msa0831760:CDS
GTGTGCTCTAGCAAGAACCC+TGG 0.689023 5_4:+4785537 Msa0831760:CDS
AATAAAGGAAGAAATATCAG+GGG 0.690583 5_4:+4785393 Msa0831760:CDS
CTATGATATATATCGTAGGG+AGG 0.690793 5_4:+4787370 Msa0831760:CDS
TATCAACAAGTGACCGACGT+GGG 0.703885 5_4:+4786658 Msa0831760:CDS
GCACATCTTATGGAATACAA+GGG 0.722893 5_4:+4785121 Msa0831760:CDS
TTATCAACAAGTGACCGACG+TGG 0.731964 5_4:+4786657 Msa0831760:CDS
AAACCTCAAGAATGTCCATG+AGG 0.733120 5_4:-4787493 None:intergenic
TAACCCAACTCTGCCCACGT+CGG 0.749850 5_4:-4786671 None:intergenic
CAACCATCTATGCTTCAAGG+CGG 0.753782 5_4:+4784974 Msa0831760:CDS
ACAAACGAGTGATGACACCG+GGG 0.833577 5_4:+4789053 Msa0831760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTCAAATAATAAAATAT+AGG - chr5_4:4788209-4788228 None:intergenic 10.0%
!! ACTATTTAAACATTAATATA+TGG + chr5_4:4788604-4788623 Msa0831760:intron 10.0%
!! TTGTTTAATAACAACTTAAA+TGG + chr5_4:4785043-4785062 Msa0831760:CDS 15.0%
!!! TTTATTATGTTTGTTAGTAT+TGG + chr5_4:4785595-4785614 Msa0831760:intron 15.0%
!! AAGTAAAATTCTAATAAGAA+AGG - chr5_4:4786071-4786090 None:intergenic 15.0%
!!! TTTCTTATTAGAATTTTACT+TGG + chr5_4:4786070-4786089 Msa0831760:intron 15.0%
!!! GTACTTTTTTATTTGAATAT+TGG + chr5_4:4786783-4786802 Msa0831760:intron 15.0%
!!! AAAACATTTAGATATTTTCT+GGG - chr5_4:4787918-4787937 None:intergenic 15.0%
!!! TAACAACTTAAATGGAATTT+TGG + chr5_4:4785051-4785070 Msa0831760:CDS 20.0%
!!! TTATACTGATGTTTTTGTTT+GGG + chr5_4:4785620-4785639 Msa0831760:intron 20.0%
!!! ATTCAAATAAAAAAGTACTC+AGG - chr5_4:4786781-4786800 None:intergenic 20.0%
!! AAATTAATATCCAACTGAAT+GGG - chr5_4:4786954-4786973 None:intergenic 20.0%
!! TTATTGATATGTTCTATGTT+TGG + chr5_4:4786975-4786994 Msa0831760:intron 20.0%
!! GTTGTAACATTATGATAATT+TGG + chr5_4:4787064-4787083 Msa0831760:intron 20.0%
!! AAACTATGATATATATCGTA+GGG + chr5_4:4787367-4787386 Msa0831760:CDS 20.0%
!! TATAAATTTCTTAGACTTGA+TGG + chr5_4:4787533-4787552 Msa0831760:CDS 20.0%
!! CTCAAAAGAAACATAAAATA+TGG - chr5_4:4787617-4787636 None:intergenic 20.0%
!!! GAAAACATTTAGATATTTTC+TGG - chr5_4:4787919-4787938 None:intergenic 20.0%
!!! ATCTAAATGTTTTCAGTTTT+TGG + chr5_4:4787925-4787944 Msa0831760:intron 20.0%
!!! TCTAAATGTTTTCAGTTTTT+GGG + chr5_4:4787926-4787945 Msa0831760:intron 20.0%
!! GACATAAAATTCATGATTAT+GGG - chr5_4:4788148-4788167 None:intergenic 20.0%
!!! ATTACAGCTGTTTTATATGA+TGG + chr5_4:4785349-4785368 Msa0831760:CDS 25.0%
! CAATAAAGGAAGAAATATCA+GGG + chr5_4:4785392-4785411 Msa0831760:CDS 25.0%
! AATAAAGGAAGAAATATCAG+GGG + chr5_4:4785393-4785412 Msa0831760:CDS 25.0%
!! AAATACTTGATTGTTGATGA+AGG + chr5_4:4785493-4785512 Msa0831760:CDS 25.0%
!!! GTTATACTGATGTTTTTGTT+TGG + chr5_4:4785619-4785638 Msa0831760:intron 25.0%
!!! TTTTTGTTTGGGTATATTGA+AGG + chr5_4:4785631-4785650 Msa0831760:intron 25.0%
! TAATGGAGAGTGATAAAAAT+CGG + chr5_4:4785662-4785681 Msa0831760:intron 25.0%
! ACAAATGTCAAATAAATGAC+AGG - chr5_4:4785718-4785737 None:intergenic 25.0%
! GTATATCATGTACTAAAGTT+TGG + chr5_4:4785876-4785895 Msa0831760:intron 25.0%
!!! ATGGTCTCATAATTAGTTTT+GGG - chr5_4:4785971-4785990 None:intergenic 25.0%
! ATTTATCTAAAAACATACGC+AGG - chr5_4:4786016-4786035 None:intergenic 25.0%
!!! GCGTATGTTTTTAGATAAAT+TGG + chr5_4:4786016-4786035 Msa0831760:intron 25.0%
!!! TTTTACTTGGAAGCATTTTT+TGG + chr5_4:4786083-4786102 Msa0831760:intron 25.0%
!!! TTTACTTGGAAGCATTTTTT+GGG + chr5_4:4786084-4786103 Msa0831760:intron 25.0%
! AATTCAACAATAGATATTGC+TGG - chr5_4:4786141-4786160 None:intergenic 25.0%
! TAGCTGCAAAATAATTGAAT+TGG - chr5_4:4786245-4786264 None:intergenic 25.0%
! GAACTGAATTGAAAATGTTT+GGG - chr5_4:4786352-4786371 None:intergenic 25.0%
! TGAACTGAATTGAAAATGTT+TGG - chr5_4:4786353-4786372 None:intergenic 25.0%
! TAATTGTTCTTCATCTGTTA+AGG - chr5_4:4786426-4786445 None:intergenic 25.0%
!! TTAAGAGAAGAGTATGTAAA+GGG - chr5_4:4786730-4786749 None:intergenic 25.0%
!! TTTAAGAGAAGAGTATGTAA+AGG - chr5_4:4786731-4786750 None:intergenic 25.0%
!!! TTTGATTTGCTTTCTAAAGA+TGG - chr5_4:4786921-4786940 None:intergenic 25.0%
! CAAATTAATATCCAACTGAA+TGG - chr5_4:4786955-4786974 None:intergenic 25.0%
! CTAAATAGAGAAAAATCTGT+AGG + chr5_4:4787266-4787285 Msa0831760:intron 25.0%
! GAAACTATGATATATATCGT+AGG + chr5_4:4787366-4787385 Msa0831760:CDS 25.0%
!! AGCATTGAATTTCTTTAGAA+GGG - chr5_4:4787585-4787604 None:intergenic 25.0%
! TTATAATCTTTGACAGTGAT+TGG + chr5_4:4787684-4787703 Msa0831760:CDS 25.0%
! TGTTTCTTTGCATGTTAAAA+AGG + chr5_4:4787962-4787981 Msa0831760:intron 25.0%
! TGTTTGACAAAGTTTATACA+GGG - chr5_4:4788056-4788075 None:intergenic 25.0%
! GGACATAAAATTCATGATTA+TGG - chr5_4:4788149-4788168 None:intergenic 25.0%
! AATAATCAAAGTTTGAATCC+TGG + chr5_4:4788287-4788306 Msa0831760:intron 25.0%
!!! GTTAATTTTTAGCAAGATCT+AGG - chr5_4:4788586-4788605 None:intergenic 25.0%
!!! TCAAATGCAGATACTTTTTA+TGG + chr5_4:4789123-4789142 Msa0831760:CDS 25.0%
!!! CAAATGCAGATACTTTTTAT+GGG + chr5_4:4789124-4789143 Msa0831760:CDS 25.0%
! ATCCTTGATTTCATGTTTAT+GGG - chr5_4:4789190-4789209 None:intergenic 25.0%
! TATCCTTGATTTCATGTTTA+TGG - chr5_4:4789191-4789210 None:intergenic 25.0%
! CAAATATTTGGGAAAATTTC+TGG - chr5_4:4789375-4789394 None:intergenic 25.0%
! AGAACTTGGTTCAAATATTT+GGG - chr5_4:4789386-4789405 None:intergenic 25.0%
!!! TGTTTTATATGATGGACGAA+TGG + chr5_4:4785357-4785376 Msa0831760:CDS 30.0%
GCAATAAAGGAAGAAATATC+AGG + chr5_4:4785391-4785410 Msa0831760:CDS 30.0%
! CATTTCTGAAGAAAATCCAT+TGG + chr5_4:4785470-4785489 Msa0831760:CDS 30.0%
CAACAATCAAGTATTTCCAA+TGG - chr5_4:4785489-4785508 None:intergenic 30.0%
TATTGAAGGAGGAAAGATAA+TGG + chr5_4:4785645-4785664 Msa0831760:intron 30.0%
AATGGAGAGTGATAAAAATC+GGG + chr5_4:4785663-4785682 Msa0831760:intron 30.0%
AATGTCAAATAAATGACAGG+AGG - chr5_4:4785715-4785734 None:intergenic 30.0%
ATGATATACACTGTATTGTG+GGG - chr5_4:4785865-4785884 None:intergenic 30.0%
CATGATATACACTGTATTGT+GGG - chr5_4:4785866-4785885 None:intergenic 30.0%
ACATGATATACACTGTATTG+TGG - chr5_4:4785867-4785886 None:intergenic 30.0%
CTTTAACAGAGATGAGTTTA+GGG - chr5_4:4785909-4785928 None:intergenic 30.0%
CTAAACTCATCTCTGTTAAA+GGG + chr5_4:4785908-4785927 Msa0831760:intron 30.0%
TAAACTCATCTCTGTTAAAG+GGG + chr5_4:4785909-4785928 Msa0831760:intron 30.0%
!!! TGGTCTCATAATTAGTTTTG+GGG - chr5_4:4785970-4785989 None:intergenic 30.0%
!! CATGGTCTCATAATTAGTTT+TGG - chr5_4:4785972-4785991 None:intergenic 30.0%
CAAAACTAATTATGAGACCA+TGG + chr5_4:4785970-4785989 Msa0831760:intron 30.0%
CAATTCAGTTCAAAATTTCG+AGG + chr5_4:4786361-4786380 Msa0831760:CDS 30.0%
! AATAAACCATTCCCTCTTTT+AGG + chr5_4:4786525-4786544 Msa0831760:intron 30.0%
TTATTACCTAAAAGAGGGAA+TGG - chr5_4:4786534-4786553 None:intergenic 30.0%
!! ATTCCCTCTTTTAGGTAATA+AGG + chr5_4:4786533-4786552 Msa0831760:intron 30.0%
! TTTTTCCTTCGTAGTATGAA+GGG - chr5_4:4786559-4786578 None:intergenic 30.0%
! TTGATAATATACTTTCTGCC+AGG - chr5_4:4786644-4786663 None:intergenic 30.0%
!!! ATCTTTTTTTCCCATTCAGT+TGG + chr5_4:4786941-4786960 Msa0831760:intron 30.0%
!!! TAAAGCGAGAATTTTTTTCC+TGG + chr5_4:4787021-4787040 Msa0831760:intron 30.0%
TGTTACAACTAGTAAAGTGT+TGG - chr5_4:4787053-4787072 None:intergenic 30.0%
!!! TCCAAAGAACTAGTTTTCAT+TGG + chr5_4:4787144-4787163 Msa0831760:intron 30.0%
! ACCAATGAAAACTAGTTCTT+TGG - chr5_4:4787148-4787167 None:intergenic 30.0%
ATAAACCAACATTACAGAGA+CGG - chr5_4:4787192-4787211 None:intergenic 30.0%
AGAAATCAGGTAAGCATATA+AGG - chr5_4:4787219-4787238 None:intergenic 30.0%
!! GAGCATTGAATTTCTTTAGA+AGG - chr5_4:4787586-4787605 None:intergenic 30.0%
AACATAAAATATGGTGAGTC+AGG - chr5_4:4787608-4787627 None:intergenic 30.0%
! AGTTTTTGTGTTAGTTAGTG+TGG + chr5_4:4787772-4787791 Msa0831760:CDS 30.0%
! GTTTTTGTGTTAGTTAGTGT+GGG + chr5_4:4787773-4787792 Msa0831760:CDS 30.0%
!! AAATGTTTTCAGTTTTTGGG+TGG + chr5_4:4787929-4787948 Msa0831760:intron 30.0%
CTGTTTGACAAAGTTTATAC+AGG - chr5_4:4788057-4788076 None:intergenic 30.0%
AAAAGGCCTGAAATTACATT+GGG - chr5_4:4788110-4788129 None:intergenic 30.0%
AAAACAATATTGACGTGCAT+CGG - chr5_4:4788237-4788256 None:intergenic 30.0%
CATTTGAGAAACTTTATCGT+TGG + chr5_4:4788401-4788420 Msa0831760:intron 30.0%
GTATCTAATTCTTCAGCTAA+AGG + chr5_4:4788994-4789013 Msa0831760:CDS 30.0%
ATTTGATCTTTCATTTCCCA+TGG - chr5_4:4789109-4789128 None:intergenic 30.0%
TTCCCATAAACATGAAATCA+AGG + chr5_4:4789185-4789204 Msa0831760:CDS 30.0%
AAACATGAAATCAAGGATAC+AGG + chr5_4:4789192-4789211 Msa0831760:CDS 30.0%
CAGAACTTGGTTCAAATATT+TGG - chr5_4:4789387-4789406 None:intergenic 30.0%
CAAGAATTAAAAGCAGAACT+TGG - chr5_4:4789400-4789419 None:intergenic 30.0%
ATAAAATTACAACAGCCAGA+AGG - chr5_4:4789481-4789500 None:intergenic 30.0%
TTAAGACCATACCAGATAGA+AGG + chr5_4:4785001-4785020 Msa0831760:CDS 35.0%
TAAGACCATACCAGATAGAA+GGG + chr5_4:4785002-4785021 Msa0831760:CDS 35.0%
!! TAAACAAAGAAAGCATCCAC+TGG - chr5_4:4785030-4785049 None:intergenic 35.0%
!!! TGGAATTTTGGCTGATGAAA+TGG + chr5_4:4785063-4785082 Msa0831760:CDS 35.0%
!!! GGAATTTTGGCTGATGAAAT+GGG + chr5_4:4785064-4785083 Msa0831760:CDS 35.0%
!!! GAATTTTGGCTGATGAAATG+GGG + chr5_4:4785065-4785084 Msa0831760:CDS 35.0%
AAGATGTGCTATCAACGAAA+TGG - chr5_4:4785110-4785129 None:intergenic 35.0%
!! TTCGTTGATAGCACATCTTA+TGG + chr5_4:4785111-4785130 Msa0831760:CDS 35.0%
AGCACATCTTATGGAATACA+AGG + chr5_4:4785120-4785139 Msa0831760:CDS 35.0%
GCACATCTTATGGAATACAA+GGG + chr5_4:4785121-4785140 Msa0831760:CDS 35.0%
TTGGAGCCACAATCAAAAAA+GGG - chr5_4:4785156-4785175 None:intergenic 35.0%
! TTTGGAGCCACAATCAAAAA+AGG - chr5_4:4785157-4785176 None:intergenic 35.0%
!!! TTTTTTGATTGTGGCTCCAA+AGG + chr5_4:4785156-4785175 Msa0831760:CDS 35.0%
TATCTAACTTCGACATACCT+AGG - chr5_4:4785223-4785242 None:intergenic 35.0%
ACTCATGATTCTTCAATCGA+TGG - chr5_4:4785519-4785538 None:intergenic 35.0%
TATGGCCAGTATTAGTGTTA+TGG + chr5_4:4785568-4785587 Msa0831760:intron 35.0%
ATGGCCAGTATTAGTGTTAT+GGG + chr5_4:4785569-4785588 Msa0831760:intron 35.0%
TTGTTTGGGTATATTGAAGG+AGG + chr5_4:4785634-4785653 Msa0831760:intron 35.0%
ATGGAGAGTGATAAAAATCG+GGG + chr5_4:4785664-4785683 Msa0831760:intron 35.0%
AGGAGGAAAGAAAAAAATCC+GGG - chr5_4:4785698-4785717 None:intergenic 35.0%
CAGGAGGAAAGAAAAAAATC+CGG - chr5_4:4785699-4785718 None:intergenic 35.0%
TGATTGTGAAACAGAGAAGA+TGG - chr5_4:4785749-4785768 None:intergenic 35.0%
CCTTTAACAGAGATGAGTTT+AGG - chr5_4:4785910-4785929 None:intergenic 35.0%
CCTAAACTCATCTCTGTTAA+AGG + chr5_4:4785907-4785926 Msa0831760:intron 35.0%
!!! CTCATAATTAGTTTTGGGGT+TGG - chr5_4:4785966-4785985 None:intergenic 35.0%
ATTATGAGACCATGGCATAT+AGG + chr5_4:4785978-4785997 Msa0831760:intron 35.0%
AATAACCATCCTATATGCCA+TGG - chr5_4:4785990-4786009 None:intergenic 35.0%
!! TGGATGTAAACAGCTTTAGA+AGG - chr5_4:4786121-4786140 None:intergenic 35.0%
CTGAATTGAAAATGTTTGGG+AGG - chr5_4:4786349-4786368 None:intergenic 35.0%
! CTTTTTCCTTCGTAGTATGA+AGG - chr5_4:4786560-4786579 None:intergenic 35.0%
CTTCATACTACGAAGGAAAA+AGG + chr5_4:4786558-4786577 Msa0831760:CDS 35.0%
TATGTAAAGGGATAACTGGA+AGG - chr5_4:4786718-4786737 None:intergenic 35.0%
AGAGTATGTAAAGGGATAAC+TGG - chr5_4:4786722-4786741 None:intergenic 35.0%
GGGAATAAACAAATAACCCT+TGG - chr5_4:4786819-4786838 None:intergenic 35.0%
AAAACCAAATAGAATGGGGT+TGG - chr5_4:4786844-4786863 None:intergenic 35.0%
!! AACCCCATTCTATTTGGTTT+TGG + chr5_4:4786843-4786862 Msa0831760:intron 35.0%
AGCCAAAACCAAATAGAATG+GGG - chr5_4:4786848-4786867 None:intergenic 35.0%
GAGCCAAAACCAAATAGAAT+GGG - chr5_4:4786849-4786868 None:intergenic 35.0%
AGAGCCAAAACCAAATAGAA+TGG - chr5_4:4786850-4786869 None:intergenic 35.0%
ATTACAGAGACGGATAGTTT+GGG - chr5_4:4787182-4787201 None:intergenic 35.0%
ACTGAAGTTCTCAAGAAATC+AGG - chr5_4:4787232-4787251 None:intergenic 35.0%
AGAGAAAAATCTGTAGGTTC+TGG + chr5_4:4787272-4787291 Msa0831760:intron 35.0%
TATCATAGTTTCCCACAAAG+AGG - chr5_4:4787358-4787377 None:intergenic 35.0%
CTATGATATATATCGTAGGG+AGG + chr5_4:4787370-4787389 Msa0831760:CDS 35.0%
GAGTCATTTGTGAAAAAAGG+AGG - chr5_4:4787472-4787491 None:intergenic 35.0%
ATCCATTGAAGAGGTGATAT+TGG + chr5_4:4787796-4787815 Msa0831760:CDS 35.0%
TTCCAATATCACCTCTTCAA+TGG - chr5_4:4787801-4787820 None:intergenic 35.0%
GAACGTGCTAAACAAAAGAT+GGG + chr5_4:4787818-4787837 Msa0831760:CDS 35.0%
CTGTTGACGTTGTATTGAAA+AGG - chr5_4:4787871-4787890 None:intergenic 35.0%
! CTTTTCAATACAACGTCAAC+AGG + chr5_4:4787869-4787888 Msa0831760:CDS 35.0%
TCATGACCCAATGTAATTTC+AGG + chr5_4:4788101-4788120 Msa0831760:intron 35.0%
CAAAAGGCCTGAAATTACAT+TGG - chr5_4:4788111-4788130 None:intergenic 35.0%
CATCTGAAAGAGTTTGAGAA+GGG - chr5_4:4788313-4788332 None:intergenic 35.0%
ACATCTGAAAGAGTTTGAGA+AGG - chr5_4:4788314-4788333 None:intergenic 35.0%
CTTGACGAGACATTCTTTAT+TGG + chr5_4:4788347-4788366 Msa0831760:intron 35.0%
GGGATGTTCGAATAATTAGT+TGG + chr5_4:4788436-4788455 Msa0831760:intron 35.0%
CTAATGCTCAAAATCAGGTA+GGG - chr5_4:4788499-4788518 None:intergenic 35.0%
CTTTGCTAATGCTCAAAATC+AGG - chr5_4:4788504-4788523 None:intergenic 35.0%
AGAGAATGGATGAAGATAGA+AGG + chr5_4:4788773-4788792 Msa0831760:CDS 35.0%
GGCACTAAATAAGGATGAAA+AGG + chr5_4:4788858-4788877 Msa0831760:CDS 35.0%
ATACGTTAAGCGATCTACAA+TGG + chr5_4:4788944-4788963 Msa0831760:CDS 35.0%
TTAGAGTTAAGCAACACCAT+GGG + chr5_4:4789090-4789109 Msa0831760:CDS 35.0%
AAAGGCTGTTCTGCCAAATT+GGG + chr5_4:4785174-4785193 Msa0831760:CDS 40.0%
TCCTAACATGTTCTCCTGTT+TGG + chr5_4:4785256-4785275 Msa0831760:intron 40.0%
CCTAACATGTTCTCCTGTTT+GGG + chr5_4:4785257-4785276 Msa0831760:intron 40.0%
GGATGAGAGGAAAGCAATAA+AGG + chr5_4:4785378-4785397 Msa0831760:CDS 40.0%
AAAGGAAGAAATATCAGGGG+AGG + chr5_4:4785396-4785415 Msa0831760:CDS 40.0%
AAGGAAGAAATATCAGGGGA+GGG + chr5_4:4785397-4785416 Msa0831760:CDS 40.0%
TGGCCAGTATTAGTGTTATG+GGG + chr5_4:4785570-4785589 Msa0831760:intron 40.0%
AGTCCCCATAACACTAATAC+TGG - chr5_4:4785576-4785595 None:intergenic 40.0%
AGAGTGATAAAAATCGGGGT+GGG + chr5_4:4785668-4785687 Msa0831760:intron 40.0%
AGGAAAGAAAAAAATCCGGG+TGG - chr5_4:4785695-4785714 None:intergenic 40.0%
TGTGAAACAGAGAAGATGGA+GGG - chr5_4:4785745-4785764 None:intergenic 40.0%
TTGTGAAACAGAGAAGATGG+AGG - chr5_4:4785746-4785765 None:intergenic 40.0%
!! TAAAGGGGCATGTGTTGTTT+AGG + chr5_4:4785924-4785943 Msa0831760:intron 40.0%
!!! ATTAGTTTTGGGGTTGGTTG+AGG - chr5_4:4785960-4785979 None:intergenic 40.0%
CAGTTCAAAATTTCGAGGAC+TGG + chr5_4:4786366-4786385 Msa0831760:CDS 40.0%
ACATCAACTCGATCTGCAAA+GGG - chr5_4:4786401-4786420 None:intergenic 40.0%
!! GGGCCTTATTACCTAAAAGA+GGG - chr5_4:4786539-4786558 None:intergenic 40.0%
!! AGGGCCTTATTACCTAAAAG+AGG - chr5_4:4786540-4786559 None:intergenic 40.0%
GAGGTAGAAAAGTTTCTTCC+TGG + chr5_4:4786583-4786602 Msa0831760:CDS 40.0%
GTTTCTTCCTGGTAAATCTC+AGG + chr5_4:4786594-4786613 Msa0831760:CDS 40.0%
AGTATGACCTGAGATTTACC+AGG - chr5_4:4786604-4786623 None:intergenic 40.0%
CAAATAGAATGGGGTTGGAT+GGG - chr5_4:4786839-4786858 None:intergenic 40.0%
!! GTAAAGTGTTGGAAAACACC+AGG - chr5_4:4787042-4787061 None:intergenic 40.0%
CATTACAGAGACGGATAGTT+TGG - chr5_4:4787183-4787202 None:intergenic 40.0%
ACTATCCGTCTCTGTAATGT+TGG + chr5_4:4787184-4787203 Msa0831760:intron 40.0%
AGAACTTGACAATGCAACTC+AGG + chr5_4:4787312-4787331 Msa0831760:CDS 40.0%
TAGTTTCCCACAAAGAGGTA+GGG - chr5_4:4787353-4787372 None:intergenic 40.0%
ATAGTTTCCCACAAAGAGGT+AGG - chr5_4:4787354-4787373 None:intergenic 40.0%
GGCGAGTCATTTGTGAAAAA+AGG - chr5_4:4787475-4787494 None:intergenic 40.0%
AAACCTCAAGAATGTCCATG+AGG - chr5_4:4787496-4787515 None:intergenic 40.0%
TCAACAAAAACCGAGGAAAG+AGG + chr5_4:4787557-4787576 Msa0831760:CDS 40.0%
!! CAGCTTGTTGATCCATTTGT+GGG - chr5_4:4787712-4787731 None:intergenic 40.0%
!! TCAGCTTGTTGATCCATTTG+TGG - chr5_4:4787713-4787732 None:intergenic 40.0%
ACAAATGGATCAACAAGCTG+AGG + chr5_4:4787712-4787731 Msa0831760:CDS 40.0%
GGAACGTGCTAAACAAAAGA+TGG + chr5_4:4787817-4787836 Msa0831760:CDS 40.0%
AATTGATGCCAAAGTCATCC+AGG + chr5_4:4787841-4787860 Msa0831760:CDS 40.0%
!!! TGTTTTCAGTTTTTGGGTGG+TGG + chr5_4:4787932-4787951 Msa0831760:intron 40.0%
!!! GTTTTCAGTTTTTGGGTGGT+GGG + chr5_4:4787933-4787952 Msa0831760:intron 40.0%
!!! TTTTCAGTTTTTGGGTGGTG+GGG + chr5_4:4787934-4787953 Msa0831760:intron 40.0%
GCAATTTGCAAGCATAATGC+TGG - chr5_4:4788025-4788044 None:intergenic 40.0%
GGTCAGTATCAAGCATCAAA+AGG - chr5_4:4788127-4788146 None:intergenic 40.0%
CAAGCTGCGTTCAGTATAAA+AGG - chr5_4:4788170-4788189 None:intergenic 40.0%
! TATCGTTGGTTGAGCATTTG+AGG + chr5_4:4788415-4788434 Msa0831760:intron 40.0%
! ATCGTTGGTTGAGCATTTGA+GGG + chr5_4:4788416-4788435 Msa0831760:intron 40.0%
GCTAATGCTCAAAATCAGGT+AGG - chr5_4:4788500-4788519 None:intergenic 40.0%
CGAAACACGGAAGATTGAAA+TGG - chr5_4:4788560-4788579 None:intergenic 40.0%
AAGATCTAGGAAGCGAAACA+CGG - chr5_4:4788573-4788592 None:intergenic 40.0%
CAACATTTCTCTTCTGTCCT+GGG - chr5_4:4788647-4788666 None:intergenic 40.0%
CCAAAATTCCTCATCTGATC+GGG - chr5_4:4788746-4788765 None:intergenic 40.0%
GCCAAAATTCCTCATCTGAT+CGG - chr5_4:4788747-4788766 None:intergenic 40.0%
!!! ATTTTGGCTGTTCGAGAGAA+TGG + chr5_4:4788759-4788778 Msa0831760:CDS 40.0%
GGATGAAGATAGAAGGCAAA+AGG + chr5_4:4788780-4788799 Msa0831760:CDS 40.0%
GGTATACTCGGCACTAAATA+AGG + chr5_4:4788849-4788868 Msa0831760:CDS 40.0%
AAAGCGGACAAGAAAAGAAG+TGG + chr5_4:4788912-4788931 Msa0831760:CDS 40.0%
AAGCGATCTACAATGGATGA+AGG + chr5_4:4788951-4788970 Msa0831760:CDS 40.0%
GTTAGAGTTAAGCAACACCA+TGG + chr5_4:4789089-4789108 Msa0831760:CDS 40.0%
TTCATGCTTGAACCTCTTAG+AGG - chr5_4:4789157-4789176 None:intergenic 40.0%
ATCAAGGATACAGGTGTAAG+TGG + chr5_4:4789201-4789220 Msa0831760:CDS 40.0%
! TGAACGAGCATGTGTTTTCT+TGG + chr5_4:4789226-4789245 Msa0831760:CDS 40.0%
GTTCATTATCTGATGCCAGA+GGG + chr5_4:4789289-4789308 Msa0831760:CDS 40.0%
AGATACTACCAAGTTCCTTC+TGG + chr5_4:4789463-4789482 Msa0831760:three_prime_UTR 40.0%
GAGCAACCATCTATGCTTCA+AGG + chr5_4:4784971-4784990 Msa0831760:CDS 45.0%
CAACCATCTATGCTTCAAGG+CGG + chr5_4:4784974-4784993 Msa0831760:CDS 45.0%
! ATGGAATACAAGGGTGTGAC+TGG + chr5_4:4785130-4785149 Msa0831760:CDS 45.0%
!!! GACTGGCCCTTTTTTGATTG+TGG + chr5_4:4785147-4785166 Msa0831760:CDS 45.0%
CAATTTGGCAGAACAGCCTT+TGG - chr5_4:4785175-4785194 None:intergenic 45.0%
CAAAGGCTGTTCTGCCAAAT+TGG + chr5_4:4785173-4785192 Msa0831760:CDS 45.0%
CCCAAACAGGAGAACATGTT+AGG - chr5_4:4785260-4785279 None:intergenic 45.0%
ATGTTCTCCTGTTTGGGAGA+AGG + chr5_4:4785263-4785282 Msa0831760:intron 45.0%
TCCTGTTTGGGAGAAGGTAA+TGG + chr5_4:4785269-4785288 Msa0831760:intron 45.0%
TCCATTACCTTCTCCCAAAC+AGG - chr5_4:4785273-4785292 None:intergenic 45.0%
!! ATGATGGACGAATGGATGAG+AGG + chr5_4:4785365-4785384 Msa0831760:CDS 45.0%
AGGAAGAAATATCAGGGGAG+GGG + chr5_4:4785398-4785417 Msa0831760:CDS 45.0%
GAGAGTGATAAAAATCGGGG+TGG + chr5_4:4785667-4785686 Msa0831760:intron 45.0%
GAGTGATAAAAATCGGGGTG+GGG + chr5_4:4785669-4785688 Msa0831760:intron 45.0%
AAGAGATAGTCCAGAGAGAG+AGG - chr5_4:4785784-4785803 None:intergenic 45.0%
CTGGACTATCTCTTTCTTCC+TGG + chr5_4:4785790-4785809 Msa0831760:intron 45.0%
TACACTGTATTGTGGGGCAA+TGG - chr5_4:4785859-4785878 None:intergenic 45.0%
TGAGACCATGGCATATAGGA+TGG + chr5_4:4785982-4786001 Msa0831760:intron 45.0%
GAACGAAGACTTCTGTTGAC+CGG + chr5_4:4786272-4786291 Msa0831760:CDS 45.0%
TGGGAGGAGAAAATTGAGCA+GGG - chr5_4:4786333-4786352 None:intergenic 45.0%
TTGGGAGGAGAAAATTGAGC+AGG - chr5_4:4786334-4786353 None:intergenic 45.0%
CACATCAACTCGATCTGCAA+AGG - chr5_4:4786402-4786421 None:intergenic 45.0%
AGAAACTCACCTGATGCAGA+CGG - chr5_4:4786460-4786479 None:intergenic 45.0%
TAAGGCCCTTCATACTACGA+AGG + chr5_4:4786551-4786570 Msa0831760:CDS 45.0%
ACTACGAAGGAAAAAGGCTG+AGG + chr5_4:4786564-4786583 Msa0831760:CDS 45.0%
TCAAATGTGACATGTCAGCC+TGG + chr5_4:4786623-4786642 Msa0831760:CDS 45.0%
TTATCAACAAGTGACCGACG+TGG + chr5_4:4786657-4786676 Msa0831760:CDS 45.0%
TATCAACAAGTGACCGACGT+GGG + chr5_4:4786658-4786677 Msa0831760:CDS 45.0%
AAATAACCCTTGGCAGAAGC+AGG - chr5_4:4786809-4786828 None:intergenic 45.0%
CCAAATAGAATGGGGTTGGA+TGG - chr5_4:4786840-4786859 None:intergenic 45.0%
CCATCCAACCCCATTCTATT+TGG + chr5_4:4786837-4786856 Msa0831760:intron 45.0%
CTCGCTTTACGAAAGAGAGA+AGG - chr5_4:4787010-4787029 None:intergenic 45.0%
TAACCATCCCTACCTCTTTG+TGG + chr5_4:4787343-4787362 Msa0831760:CDS 45.0%
AACCATCCCTACCTCTTTGT+GGG + chr5_4:4787344-4787363 Msa0831760:CDS 45.0%
!!! TACGGAGTTTTGGAAGCAAG+CGG - chr5_4:4787433-4787452 None:intergenic 45.0%
TTCACAAATGACTCGCCTCA+TGG + chr5_4:4787478-4787497 Msa0831760:CDS 45.0%
TGATGGCTCAACAAAAACCG+AGG + chr5_4:4787550-4787569 Msa0831760:CDS 45.0%
TAGAAGGGAACCTCTTTCCT+CGG - chr5_4:4787570-4787589 None:intergenic 45.0%
! TTTCTTTTGAGCACTCGTGC+CGG + chr5_4:4787626-4787645 Msa0831760:CDS 45.0%
CAAGTTCAAACCAAGACCTC+CGG - chr5_4:4787648-4787667 None:intergenic 45.0%
CAGTGATTGGAACCCACAAA+TGG + chr5_4:4787697-4787716 Msa0831760:CDS 45.0%
! CTTCTTTTGCCCAATGCGAT+GGG - chr5_4:4787744-4787763 None:intergenic 45.0%
TAGTGTGGGATCCATTGAAG+AGG + chr5_4:4787787-4787806 Msa0831760:CDS 45.0%
TTGTATTGAAAAGGCCAGCC+TGG - chr5_4:4787862-4787881 None:intergenic 45.0%
!!! TTTCAGTTTTTGGGTGGTGG+GGG + chr5_4:4787935-4787954 Msa0831760:intron 45.0%
GGAAGATTGAAATGGCAGCA+GGG - chr5_4:4788552-4788571 None:intergenic 45.0%
TATTTCAATTCGTGCAGCCC+AGG + chr5_4:4788627-4788646 Msa0831760:intron 45.0%
CCAACATTTCTCTTCTGTCC+TGG - chr5_4:4788648-4788667 None:intergenic 45.0%
CCAGGACAGAAGAGAAATGT+TGG + chr5_4:4788645-4788664 Msa0831760:CDS 45.0%
GGACAGAAGAGAAATGTTGG+AGG + chr5_4:4788648-4788667 Msa0831760:CDS 45.0%
TTGGAGGAGATTATGCGTAG+AGG + chr5_4:4788664-4788683 Msa0831760:CDS 45.0%
CGGTTAATTTCTCTCTCGCT+TGG - chr5_4:4788715-4788734 None:intergenic 45.0%
! CCCGATCAGATGAGGAATTT+TGG + chr5_4:4788743-4788762 Msa0831760:CDS 45.0%
GAACTACAGATCTCGTCTCA+TGG + chr5_4:4788804-4788823 Msa0831760:CDS 45.0%
ATGAGAACGAACTGCCAGAT+TGG + chr5_4:4788827-4788846 Msa0831760:CDS 45.0%
TGAGAACGAACTGCCAGATT+GGG + chr5_4:4788828-4788847 Msa0831760:CDS 45.0%
ACTGCCAGATTGGGTATACT+CGG + chr5_4:4788837-4788856 Msa0831760:CDS 45.0%
AGCACTGCTGTCAAAAGCTT+TGG - chr5_4:4788884-4788903 None:intergenic 45.0%
! TTTGACAGCAGTGCTGTTAC+TGG + chr5_4:4788889-4788908 Msa0831760:CDS 45.0%
TCTACAATGGATGAAGGCTG+TGG + chr5_4:4788957-4788976 Msa0831760:CDS 45.0%
TTTGTGCATGGCTGTCGATA+GGG - chr5_4:4789038-4789057 None:intergenic 45.0%
TGTCATCACTCGTTTGTGCA+TGG - chr5_4:4789050-4789069 None:intergenic 45.0%
TAACAACCTTTCTTCTGCCC+CGG - chr5_4:4789073-4789092 None:intergenic 45.0%
AAGATCAAGCTATCCTAGCC+AGG + chr5_4:4789266-4789285 Msa0831760:CDS 45.0%
AGATCAAGCTATCCTAGCCA+GGG + chr5_4:4789267-4789286 Msa0831760:CDS 45.0%
TCAGATAATGAACCCTGGCT+AGG - chr5_4:4789282-4789301 None:intergenic 45.0%
TGGCATCAGATAATGAACCC+TGG - chr5_4:4789287-4789306 None:intergenic 45.0%
GGTTCATTATCTGATGCCAG+AGG + chr5_4:4789288-4789307 Msa0831760:CDS 45.0%
TCCATTTGAATTCTGCCCTC+TGG - chr5_4:4789307-4789326 None:intergenic 45.0%
TACAACAGCCAGAAGGAACT+TGG - chr5_4:4789474-4789493 None:intergenic 45.0%
TCTCCGCCTTGAAGCATAGA+TGG - chr5_4:4784980-4784999 None:intergenic 50.0%
TGGAGCCCTTCTATCTGGTA+TGG - chr5_4:4785010-4785029 None:intergenic 50.0%
TTGGCTGATGAAATGGGGCT+TGG + chr5_4:4785070-4785089 Msa0831760:CDS 50.0%
GCGAACTCGTTGACCCAATT+TGG - chr5_4:4785190-4785209 None:intergenic 50.0%
GGTCAACGAGTTCGCAACAT+GGG + chr5_4:4785195-4785214 Msa0831760:CDS 50.0%
TAGCAAGAACCCTGGACAAC+AGG + chr5_4:4785545-4785564 Msa0831760:CDS 50.0%
AGAACCCTGGACAACAGGTA+TGG + chr5_4:4785550-4785569 Msa0831760:intron 50.0%
GAAACAGAGAAGATGGAGGG+TGG - chr5_4:4785742-4785761 None:intergenic 50.0%
TCTTTCTCAGCCTCTCTCTC+TGG + chr5_4:4785771-4785790 Msa0831760:intron 50.0%
TCTCAGGGGGTCTGAAAAGA+AGG - chr5_4:4785817-4785836 None:intergenic 50.0%
AGGTAGTGAGCTAGGTCTCA+GGG - chr5_4:4785832-4785851 None:intergenic 50.0%
AAGGTAGTGAGCTAGGTCTC+AGG - chr5_4:4785833-4785852 None:intergenic 50.0%
ATGGAGGAAGGTAGTGAGCT+AGG - chr5_4:4785840-4785859 None:intergenic 50.0%
TATTGTGGGGCAATGGAGGA+AGG - chr5_4:4785852-4785871 None:intergenic 50.0%
ACTGTATTGTGGGGCAATGG+AGG - chr5_4:4785856-4785875 None:intergenic 50.0%
! GCTGTTCTGAATTGGGGTAC+CGG - chr5_4:4786294-4786313 None:intergenic 50.0%
! CTGCAGGCTGTTCTGAATTG+GGG - chr5_4:4786300-4786319 None:intergenic 50.0%
! CCTGCAGGCTGTTCTGAATT+GGG - chr5_4:4786301-4786320 None:intergenic 50.0%
! TCCTGCAGGCTGTTCTGAAT+TGG - chr5_4:4786302-4786321 None:intergenic 50.0%
AGAACAGCCTGCAGGAATTG+TGG + chr5_4:4786306-4786325 Msa0831760:CDS 50.0%
GATTATTCGCCGTCTGCATC+AGG + chr5_4:4786448-4786467 Msa0831760:CDS 50.0%
! GGCAGAGTTGGGTTAGACTA+CGG + chr5_4:4786679-4786698 Msa0831760:CDS 50.0%
! ATATTGGCCTGCTTCTGCCA+AGG + chr5_4:4786799-4786818 Msa0831760:intron 50.0%
! TATTGGCCTGCTTCTGCCAA+GGG + chr5_4:4786800-4786819 Msa0831760:intron 50.0%
CAGAGACGGATAGTTTGGGA+TGG - chr5_4:4787178-4787197 None:intergenic 50.0%
TTCCCACAAAGAGGTAGGGA+TGG - chr5_4:4787349-4787368 None:intergenic 50.0%
! AGGAGATCGTCAGAGCATCA+GGG + chr5_4:4787390-4787409 Msa0831760:CDS 50.0%
CTTCCAAAACTCCGTAGAGC+TGG + chr5_4:4787437-4787456 Msa0831760:CDS 50.0%
! TGACCAGCTCTACGGAGTTT+TGG - chr5_4:4787443-4787462 None:intergenic 50.0%
GGACTCTATGACCAGCTCTA+CGG - chr5_4:4787451-4787470 None:intergenic 50.0%
TCGCCTCATGGACATTCTTG+AGG + chr5_4:4787490-4787509 Msa0831760:CDS 50.0%
! CCTTCTTTTGCCCAATGCGA+TGG - chr5_4:4787745-4787764 None:intergenic 50.0%
CCATCGCATTGGGCAAAAGA+AGG + chr5_4:4787742-4787761 Msa0831760:CDS 50.0%
GAAAGAGTTTGAGAAGGGCC+AGG - chr5_4:4788308-4788327 None:intergenic 50.0%
CGGAAGATTGAAATGGCAGC+AGG - chr5_4:4788553-4788572 None:intergenic 50.0%
! AGTGCCGAGTATACCCAATC+TGG - chr5_4:4788844-4788863 None:intergenic 50.0%
! GCAGTGCTGTTACTGGAAAG+CGG + chr5_4:4788896-4788915 Msa0831760:CDS 50.0%
TGGATGAAGGCTGTGGAAAG+CGG + chr5_4:4788964-4788983 Msa0831760:CDS 50.0%
GTTTGTGCATGGCTGTCGAT+AGG - chr5_4:4789039-4789058 None:intergenic 50.0%
GCACAAACGAGTGATGACAC+CGG + chr5_4:4789051-4789070 Msa0831760:CDS 50.0%
CACAAACGAGTGATGACACC+GGG + chr5_4:4789052-4789071 Msa0831760:CDS 50.0%
ACAAACGAGTGATGACACCG+GGG + chr5_4:4789053-4789072 Msa0831760:CDS 50.0%
CTTGAACCTCTTAGAGGCAG+GGG - chr5_4:4789151-4789170 None:intergenic 50.0%
GCTTGAACCTCTTAGAGGCA+GGG - chr5_4:4789152-4789171 None:intergenic 50.0%
TGCTTGAACCTCTTAGAGGC+AGG - chr5_4:4789153-4789172 None:intergenic 50.0%
GCCAGAGGGCAGAATTCAAA+TGG + chr5_4:4789303-4789322 Msa0831760:CDS 50.0%
ACCAGATAGAAGGGCTCCAG+TGG + chr5_4:4785011-4785030 Msa0831760:CDS 55.0%
TCCACTGGAGCCCTTCTATC+TGG - chr5_4:4785015-4785034 None:intergenic 55.0%
GGGTCAACGAGTTCGCAACA+TGG + chr5_4:4785194-4785213 Msa0831760:CDS 55.0%
AGTTCGCAACATGGGCTCCT+AGG + chr5_4:4785203-4785222 Msa0831760:CDS 55.0%
GTGTGCTCTAGCAAGAACCC+TGG + chr5_4:4785537-4785556 Msa0831760:CDS 55.0%
CTGGCCATACCTGTTGTCCA+GGG - chr5_4:4785557-4785576 None:intergenic 55.0%
ACTGGCCATACCTGTTGTCC+AGG - chr5_4:4785558-4785577 None:intergenic 55.0%
GGGGTCTGAAAAGAAGGTCC+AGG - chr5_4:4785811-4785830 None:intergenic 55.0%
GTAGTGAGCTAGGTCTCAGG+GGG - chr5_4:4785830-4785849 None:intergenic 55.0%
GGTAGTGAGCTAGGTCTCAG+GGG - chr5_4:4785831-4785850 None:intergenic 55.0%
CCCAATTCAGAACAGCCTGC+AGG + chr5_4:4786298-4786317 Msa0831760:CDS 55.0%
TAACCCAACTCTGCCCACGT+CGG - chr5_4:4786674-4786693 None:intergenic 55.0%
! GAGGAGATCGTCAGAGCATC+AGG + chr5_4:4787389-4787408 Msa0831760:CDS 55.0%
AGGATCGAGCCCATCGCATT+GGG + chr5_4:4787732-4787751 Msa0831760:CDS 55.0%
GATGCCAAAGTCATCCAGGC+TGG + chr5_4:4787845-4787864 Msa0831760:CDS 55.0%
AAGGCCAGCCTGGATGACTT+TGG - chr5_4:4787852-4787871 None:intergenic 55.0%
CGTAGAGGTAGCAGCTCACT+TGG + chr5_4:4788679-4788698 Msa0831760:CDS 55.0%
ATGACACCGGGGCAGAAGAA+AGG + chr5_4:4789064-4789083 Msa0831760:CDS 55.0%
GCAGGGACCACAATTCCTGC+AGG - chr5_4:4786316-4786335 None:intergenic 60.0%
TGACCGACGTGGGCAGAGTT+GGG + chr5_4:4786668-4786687 Msa0831760:CDS 60.0%
! CTTTTGAGCACTCGTGCCGG+AGG + chr5_4:4787629-4787648 Msa0831760:CDS 60.0%
GAGGATCGAGCCCATCGCAT+TGG + chr5_4:4787731-4787750 Msa0831760:CDS 60.0%
CATCTGATCGGGCTGCAAGG+CGG - chr5_4:4788735-4788754 None:intergenic 60.0%
CCTCATCTGATCGGGCTGCA+AGG - chr5_4:4788738-4788757 None:intergenic 60.0%
CCTTGCAGCCCGATCAGATG+AGG + chr5_4:4788735-4788754 Msa0831760:CDS 60.0%
GTGCATGGCTGTCGATAGGG+AGG - chr5_4:4789035-4789054 None:intergenic 60.0%
ATGGGACCCCTGCCTCTAAG+AGG + chr5_4:4789142-4789161 Msa0831760:CDS 60.0%
AAAATCGGGGTGGGGCCACC+CGG + chr5_4:4785677-4785696 Msa0831760:intron 65.0%
GTGACCGACGTGGGCAGAGT+TGG + chr5_4:4786667-4786686 Msa0831760:CDS 65.0%
AGCACTCGTGCCGGAGGTCT+TGG + chr5_4:4787635-4787654 Msa0831760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4784965 4789544 4784965 ID=Msa0831760;Name=Msa0831760
chr5_4 mRNA 4784965 4789544 4784965 ID=Msa0831760-mRNA-1;Parent=Msa0831760;Name=Msa0831760-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|1|1|1|1|1|6|203|713
chr5_4 exon 4784965 4785224 4784965 ID=Msa0831760-mRNA-1:exon:2012;Parent=Msa0831760-mRNA-1
chr5_4 exon 4785348 4785566 4785348 ID=Msa0831760-mRNA-1:exon:2013;Parent=Msa0831760-mRNA-1
chr5_4 exon 4786262 4786469 4786262 ID=Msa0831760-mRNA-1:exon:2014;Parent=Msa0831760-mRNA-1
chr5_4 exon 4786547 4786700 4786547 ID=Msa0831760-mRNA-1:exon:2015;Parent=Msa0831760-mRNA-1
chr5_4 exon 4787288 4787890 4787288 ID=Msa0831760-mRNA-1:exon:2016;Parent=Msa0831760-mRNA-1
chr5_4 exon 4788644 4789544 4788644 ID=Msa0831760-mRNA-1:exon:2017;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4784965 4785224 4784965 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4785348 4785566 4785348 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4786262 4786469 4786262 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4786547 4786700 4786547 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4787288 4787890 4787288 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 CDS 4788644 4789341 4788644 ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4 three_prime_UTR 4789342 4789544 4789342 ID=Msa0831760-mRNA-1:three_prime_utr;Parent=Msa0831760-mRNA-1
Gene Sequence

>Msa0831760

GTAACTGAGCAACCATCTATGCTTCAAGGCGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCGCAACATGGGCTCCTAGCATTACAGCTGTTTTATATGATGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAAATATCAGGGGAGGGGAAGTTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAAGGCCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACAACAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAACATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTACGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGTAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACCGACGTGGGCAGAGTTGGGTTAGACTACGGTTCTGGAAAATCAAAAAGTTTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGGGAGGAGATCGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGCCTCATGGACATTCTTGAGGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCACCATATTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAAAAGAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCCATTGAAGAGGTGATATTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCTGGCCTTTTCAATACAACGTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGCAGCTCACTTGGAACAGATGTGCCAAGCGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGATGAGGAATTTTGGCTGTTCGAGAGAATGGATGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGATGAGAACGAACTGCCAGATTGGGTATACTCGGCACTAAATAAGGATGAAAAGGCCAAAGCTTTTGACAGCAGTGCTGTTACTGGAAAGCGGACAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGCGGACATGATGTATCTAATTCTTCAGCTAAAGGAAAAAGAAGAATACGCCTCCCTATCGACAGCCATGCACAAACGAGTGATGACACCGGGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCATGGGAAATGAAAGATCAAATGCAGATACTTTTTATGGGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAGTAAGTTCCCATAAACATGAAATCAAGGATACAGGTGTAAGTGGTTTGAACGAGCATGTGTTTTCTTGGAATACTATTAGAAAAAAAAGATCAAGCTATCCTAGCCAGGGTTCATTATCTGATGCCAGAGGGCAGAATTCAAATGGAAGAAGAGCAAGCTAA
Protein sequence

>Msa0831760

VTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPFLIVAPKAVLPNWVNEFATWAPSITAVLYDGRMDERKAIKEEISGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDNSYHIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDEKAKAFDSSAVTGKRTRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRRIRLPIDSHAQTSDDTGAEERLLELSNTMGNERSNADTFYGTPASKRFKHEEVSSHKHEIKDTGVSGLNEHVFSWNTIRKKRSSYPSQGSLSDARGQNSNGRRAS*