AlfalfaGEDB | Msa0831760

M. sativa cultivar zhongmu-4 / Msa0831760

KEGG: K11647
GO: GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831760	XP_003610678.1	99.018	713	7	0	1	713	351	1063	0.0	1469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831760	sp\|F4J9M5\|CHR12_ARATH	74.162	716	174	4	1	711	391	1100	0.0	1075

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831760	G7K2A2	99.018	713	7	0	1	713	351	1063	0.0	1469

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TFs/TRs:

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Gene ID	Type	Classification
Msa0831760	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0166050	Msa0831760	0.804871	1.754297e-49	-8.615850e-47
Msa0200260	Msa0831760	0.825095	5.649581e-54	-8.615850e-47
Msa0222700	Msa0831760	0.803251	3.811099e-49	-8.615850e-47
Msa0339320	Msa0831760	0.804779	1.833623e-49	-8.615850e-47
Msa0469240	Msa0831760	0.800561	1.360245e-48	-8.615850e-47
Msa0725220	Msa0831760	0.806481	8.057167e-50	-8.615850e-47
Msa0749460	Msa0831760	0.908405	1.772842e-81	-8.615850e-47
Msa0769390	Msa0831760	0.847468	1.134497e-59	-8.615850e-47
Msa0789690	Msa0831760	0.823340	1.460242e-53	-8.615850e-47
Msa0831760	Msa0832370	0.826768	2.263336e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831760	MtrunA17_Chr5g0394201	99.018	713	7	0	1	713	351	1063	0.0	1469
Msa0831760	MtrunA17_Chr1g0205891	83.821	717	108	4	1	710	364	1079	0.0	1231
Msa0831760	MtrunA17_Chr4g0066651	50.909	550	250	7	1	535	977	1521	0.0	574
Msa0831760	MtrunA17_Chr4g0066741	47.992	523	250	8	4	519	180	687	6.14e-165	502
Msa0831760	MtrunA17_Chr7g0248031	44.605	621	283	8	1	566	982	1596	3.01e-155	497
Msa0831760	MtrunA17_Chr2g0286291	47.228	523	254	8	4	519	183	690	4.10e-154	474
Msa0831760	MtrunA17_Chr8g0348721	46.062	584	259	7	1	530	975	1556	2.35e-151	486
Msa0831760	MtrunA17_Chr5g0403921	44.118	510	248	9	7	491	178	675	1.07e-138	425
Msa0831760	MtrunA17_Chr3g0095091	46.531	490	233	7	1	472	559	1037	3.97e-133	431
Msa0831760	MtrunA17_Chr5g0442141	44.604	556	258	11	1	534	605	1132	2.54e-131	426

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831760	AT3G06010.1	74.162	716	174	4	1	711	391	1100	0.0	1075
Msa0831760	AT5G19310.2	70.042	711	184	6	1	708	110	794	0.0	1013
Msa0831760	AT5G19310.1	70.042	711	184	6	1	708	374	1058	0.0	1012
Msa0831760	AT2G28290.6	51.630	552	243	10	1	535	743	1287	4.98e-176	559
Msa0831760	AT2G28290.2	51.630	552	243	10	1	535	742	1286	5.17e-176	559
Msa0831760	AT2G28290.1	51.630	552	243	10	1	535	742	1286	8.07e-176	558
Msa0831760	AT2G28290.5	51.630	552	243	10	1	535	743	1287	8.15e-176	558
Msa0831760	AT2G28290.3	51.630	552	243	10	1	535	742	1286	8.21e-176	558
Msa0831760	AT2G28290.4	51.630	552	243	10	1	535	742	1286	8.21e-176	558
Msa0831760	AT2G46020.5	45.066	608	274	8	1	554	969	1570	1.55e-154	495

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Find 184 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGAAATCAAGGATAC+AGG	0.460250	5_4:+4789192	Msa0831760:CDS
AAACCTCAAGAATGTCCATG+AGG	0.733120	5_4:-4787493	None:intergenic
AAACTATGATATATATCGTA+GGG	0.566366	5_4:+4787367	Msa0831760:CDS
AAAGCGGACAAGAAAAGAAG+TGG	0.641891	5_4:+4788912	Msa0831760:CDS
AAAGGAAGAAATATCAGGGG+AGG	0.620434	5_4:+4785396	Msa0831760:CDS
AAAGGCTGTTCTGCCAAATT+GGG	0.437095	5_4:+4785174	Msa0831760:CDS
AAATACTTGATTGTTGATGA+AGG	0.531356	5_4:+4785493	Msa0831760:CDS
AACATAAAATATGGTGAGTC+AGG	0.399420	5_4:-4787605	None:intergenic
AACCATCCCTACCTCTTTGT+GGG	0.504206	5_4:+4787344	Msa0831760:CDS
AAGATCAAGCTATCCTAGCC+AGG	0.464234	5_4:+4789266	Msa0831760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAATAAAGGAAGAAATATC+AGG	+	chr5_4:4785391-4785410	Msa0831760:CDS	30.0%
CAACAATCAAGTATTTCCAA+TGG	-	chr5_4:4785489-4785508	None:intergenic	30.0%
TATTGAAGGAGGAAAGATAA+TGG	+	chr5_4:4785645-4785664	Msa0831760:intron	30.0%
AATGGAGAGTGATAAAAATC+GGG	+	chr5_4:4785663-4785682	Msa0831760:intron	30.0%
AATGTCAAATAAATGACAGG+AGG	-	chr5_4:4785715-4785734	None:intergenic	30.0%
ATGATATACACTGTATTGTG+GGG	-	chr5_4:4785865-4785884	None:intergenic	30.0%
CATGATATACACTGTATTGT+GGG	-	chr5_4:4785866-4785885	None:intergenic	30.0%
ACATGATATACACTGTATTG+TGG	-	chr5_4:4785867-4785886	None:intergenic	30.0%
CTTTAACAGAGATGAGTTTA+GGG	-	chr5_4:4785909-4785928	None:intergenic	30.0%
CTAAACTCATCTCTGTTAAA+GGG	+	chr5_4:4785908-4785927	Msa0831760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	4784965	4789544	4784965	ID=Msa0831760;Name=Msa0831760
chr5_4	mRNA	4784965	4789544	4784965	ID=Msa0831760-mRNA-1;Parent=Msa0831760;Name=Msa0831760-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|1\|1\|1\|1\|1\|6\|203\|713
chr5_4	exon	4784965	4785224	4784965	ID=Msa0831760-mRNA-1:exon:2012;Parent=Msa0831760-mRNA-1
chr5_4	exon	4785348	4785566	4785348	ID=Msa0831760-mRNA-1:exon:2013;Parent=Msa0831760-mRNA-1
chr5_4	exon	4786262	4786469	4786262	ID=Msa0831760-mRNA-1:exon:2014;Parent=Msa0831760-mRNA-1
chr5_4	exon	4786547	4786700	4786547	ID=Msa0831760-mRNA-1:exon:2015;Parent=Msa0831760-mRNA-1
chr5_4	exon	4787288	4787890	4787288	ID=Msa0831760-mRNA-1:exon:2016;Parent=Msa0831760-mRNA-1
chr5_4	exon	4788644	4789544	4788644	ID=Msa0831760-mRNA-1:exon:2017;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4784965	4785224	4784965	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4785348	4785566	4785348	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4786262	4786469	4786262	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4786547	4786700	4786547	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4787288	4787890	4787288	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	CDS	4788644	4789341	4788644	ID=Msa0831760-mRNA-1:cds;Parent=Msa0831760-mRNA-1
chr5_4	three_prime_UTR	4789342	4789544	4789342	ID=Msa0831760-mRNA-1:three_prime_utr;Parent=Msa0831760-mRNA-1

Gene Sequence

>Msa0831760

GTAACTGAGCAACCATCTATGCTTCAAGGCGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCGCAACATGGGCTCCTAGCATTACAGCTGTTTTATATGATGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAAATATCAGGGGAGGGGAAGTTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAAGGCCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACAACAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAACATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTACGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGTAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACCGACGTGGGCAGAGTTGGGTTAGACTACGGTTCTGGAAAATCAAAAAGTTTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGGGAGGAGATCGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGCCTCATGGACATTCTTGAGGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCACCATATTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAAAAGAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCCATTGAAGAGGTGATATTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCTGGCCTTTTCAATACAACGTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGCAGCTCACTTGGAACAGATGTGCCAAGCGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGATGAGGAATTTTGGCTGTTCGAGAGAATGGATGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGATGAGAACGAACTGCCAGATTGGGTATACTCGGCACTAAATAAGGATGAAAAGGCCAAAGCTTTTGACAGCAGTGCTGTTACTGGAAAGCGGACAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGCGGACATGATGTATCTAATTCTTCAGCTAAAGGAAAAAGAAGAATACGCCTCCCTATCGACAGCCATGCACAAACGAGTGATGACACCGGGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCATGGGAAATGAAAGATCAAATGCAGATACTTTTTATGGGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAGTAAGTTCCCATAAACATGAAATCAAGGATACAGGTGTAAGTGGTTTGAACGAGCATGTGTTTTCTTGGAATACTATTAGAAAAAAAAGATCAAGCTATCCTAGCCAGGGTTCATTATCTGATGCCAGAGGGCAGAATTCAAATGGAAGAAGAGCAAGCTAA

Protein sequence

>Msa0831760

VTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPFLIVAPKAVLPNWVNEFATWAPSITAVLYDGRMDERKAIKEEISGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDNSYHIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDEKAKAFDSSAVTGKRTRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRRIRLPIDSHAQTSDDTGAEERLLELSNTMGNERSNADTFYGTPASKRFKHEEVSSHKHEIKDTGVSGLNEHVFSWNTIRKKRSSYPSQGSLSDARGQNSNGRRAS*