Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353530 | XP_013463769.1 | 86.131 | 685 | 87 | 4 | 1 | 684 | 1 | 678 | 0.0 | 1162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353530 | sp|Q9LYZ0|PDP5_ARATH | 47.561 | 82 | 43 | 0 | 592 | 673 | 542 | 623 | 4.40e-15 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353530 | A0A072V6W3 | 86.131 | 685 | 87 | 4 | 1 | 684 | 1 | 678 | 0.0 | 1162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa1353530 | -0.816655 | 4.945588e-52 | -8.615850e-47 |
| Msa0046820 | Msa1353530 | 0.810828 | 9.491463e-51 | -8.615850e-47 |
| Msa0091770 | Msa1353530 | 0.816420 | 5.580700e-52 | -8.615850e-47 |
| Msa1347290 | Msa1353530 | 0.803399 | 3.551808e-49 | -8.615850e-47 |
| Msa1353530 | Msa1367080 | 0.826576 | 2.514917e-54 | -8.615850e-47 |
| Msa1353530 | Msa1373950 | 0.802947 | 4.405882e-49 | -8.615850e-47 |
| Msa1353530 | Msa1411070 | 0.802877 | 4.553856e-49 | -8.615850e-47 |
| Msa1353530 | Msa1427760 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa1353530 | Msa1427820 | 0.812685 | 3.744242e-51 | -8.615850e-47 |
| Msa1353530 | Msa1431000 | 0.831299 | 1.806025e-55 | -8.615850e-47 |
| Msa1353530 | Msa1438270 | 0.843009 | 1.823751e-58 | -8.615850e-47 |
| Msa1353530 | Msa1447090 | 0.808685 | 2.742861e-50 | -8.615850e-47 |
| Msa1353530 | Msa1454100 | 0.808551 | 2.929467e-50 | -8.615850e-47 |
| Msa1353530 | Msa1456810 | 0.807680 | 4.491492e-50 | -8.615850e-47 |
| Msa1353530 | Msa1464560 | 0.800520 | 1.387001e-48 | -8.615850e-47 |
| Msa0621890 | Msa1353530 | 0.821435 | 4.044222e-53 | -8.615850e-47 |
| Msa0657670 | Msa1353530 | 0.818815 | 1.610146e-52 | -8.615850e-47 |
| Msa0677400 | Msa1353530 | 0.806868 | 6.674616e-50 | -8.615850e-47 |
| Msa0715310 | Msa1353530 | 0.819756 | 9.824659e-53 | -8.615850e-47 |
| Msa0719490 | Msa1353530 | -0.811906 | 5.537080e-51 | -8.615850e-47 |
| Msa0725220 | Msa1353530 | 0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0725480 | Msa1353530 | -0.823723 | 1.188172e-53 | -8.615850e-47 |
| Msa0748610 | Msa1353530 | 0.809739 | 1.630714e-50 | -8.615850e-47 |
| Msa0749550 | Msa1353530 | 0.803634 | 3.174118e-49 | -8.615850e-47 |
| Msa0766100 | Msa1353530 | -0.829709 | 4.423318e-55 | -8.615850e-47 |
| Msa0782970 | Msa1353530 | 0.808874 | 2.498874e-50 | -8.615850e-47 |
| Msa0792510 | Msa1353530 | 0.804234 | 2.382514e-49 | -8.615850e-47 |
| Msa0831760 | Msa1353530 | 0.802925 | 4.450797e-49 | -8.615850e-47 |
| Msa0836680 | Msa1353530 | 0.809270 | 2.055518e-50 | -8.615850e-47 |
| Msa0837990 | Msa1353530 | 0.802835 | 4.646415e-49 | -8.615850e-47 |
| Msa0168100 | Msa1353530 | 0.800474 | 1.416865e-48 | -8.615850e-47 |
| Msa0205160 | Msa1353530 | 0.813017 | 3.165774e-51 | -8.615850e-47 |
| Msa0225000 | Msa1353530 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
| Msa1242230 | Msa1353530 | 0.800268 | 1.560594e-48 | -8.615850e-47 |
| Msa1254800 | Msa1353530 | 0.801017 | 1.097861e-48 | -8.615850e-47 |
| Msa1264020 | Msa1353530 | 0.816328 | 5.851883e-52 | -8.615850e-47 |
| Msa1265820 | Msa1353530 | -0.806510 | 7.944595e-50 | -8.615850e-47 |
| Msa1265960 | Msa1353530 | 0.836326 | 9.993241e-57 | -8.615850e-47 |
| Msa1267220 | Msa1353530 | 0.800736 | 1.252803e-48 | -8.615850e-47 |
| Msa1271280 | Msa1353530 | 0.820725 | 5.894729e-53 | -8.615850e-47 |
| Msa1271300 | Msa1353530 | 0.806979 | 6.322481e-50 | -8.615850e-47 |
| Msa1329990 | Msa1353530 | 0.810575 | 1.076511e-50 | -8.615850e-47 |
| Msa0382200 | Msa1353530 | 0.805273 | 1.445609e-49 | -8.615850e-47 |
| Msa0425010 | Msa1353530 | 0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0431710 | Msa1353530 | 0.805585 | 1.243285e-49 | -8.615850e-47 |
| Msa0437320 | Msa1353530 | 0.803093 | 4.109690e-49 | -8.615850e-47 |
| Msa0450050 | Msa1353530 | 0.811382 | 7.200104e-51 | -8.615850e-47 |
| Msa0980440 | Msa1353530 | 0.813466 | 2.523424e-51 | -8.615850e-47 |
| Msa0980500 | Msa1353530 | 0.813514 | 2.462417e-51 | -8.615850e-47 |
| Msa1008490 | Msa1353530 | 0.821015 | 5.054652e-53 | -8.615850e-47 |
| Msa1009000 | Msa1353530 | 0.813070 | 3.082641e-51 | -8.615850e-47 |
| Msa1018020 | Msa1353530 | -0.802055 | 6.726911e-49 | -8.615850e-47 |
| Msa1033440 | Msa1353530 | -0.816148 | 6.419844e-52 | -8.615850e-47 |
| Msa1036390 | Msa1353530 | 0.841064 | 5.960062e-58 | -8.615850e-47 |
| Msa1038050 | Msa1353530 | 0.840902 | 6.573632e-58 | -8.615850e-47 |
| Msa1040120 | Msa1353530 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa1055280 | Msa1353530 | 0.806895 | 6.587460e-50 | -8.615850e-47 |
| Msa1073110 | Msa1353530 | -0.825791 | 3.866766e-54 | -8.615850e-47 |
| Msa1076680 | Msa1353530 | 0.834548 | 2.812033e-56 | -8.615850e-47 |
| Msa1083410 | Msa1353530 | 0.817235 | 3.663106e-52 | -8.615850e-47 |
| Msa1098560 | Msa1353530 | 0.831096 | 2.026301e-55 | -8.615850e-47 |
| Msa0269360 | Msa1353530 | 0.825844 | 3.754758e-54 | -8.615850e-47 |
| Msa0275670 | Msa1353530 | 0.811042 | 8.530420e-51 | -8.615850e-47 |
| Msa0298940 | Msa1353530 | 0.836321 | 1.002370e-56 | -8.615850e-47 |
| Msa0298970 | Msa1353530 | 0.820661 | 6.096637e-53 | -8.615850e-47 |
| Msa0304740 | Msa1353530 | 0.820676 | 6.048566e-53 | -8.615850e-47 |
| Msa0325470 | Msa1353530 | 0.804394 | 2.205761e-49 | -8.615850e-47 |
| Msa0331590 | Msa1353530 | 0.822701 | 2.057948e-53 | -8.615850e-47 |
| Msa0342200 | Msa1353530 | 0.803634 | 3.174118e-49 | -8.615850e-47 |
| Msa0345010 | Msa1353530 | 0.805544 | 1.268501e-49 | -8.615850e-47 |
| Msa1128160 | Msa1353530 | 0.828060 | 1.108776e-54 | -8.615850e-47 |
| Msa1129250 | Msa1353530 | 0.802910 | 4.482915e-49 | -8.615850e-47 |
| Msa1129560 | Msa1353530 | 0.807771 | 4.294729e-50 | -8.615850e-47 |
| Msa1130360 | Msa1353530 | 0.804725 | 1.881997e-49 | -8.615850e-47 |
| Msa1165360 | Msa1353530 | 0.826225 | 3.048553e-54 | -8.615850e-47 |
| Msa1220230 | Msa1353530 | 0.817121 | 3.885408e-52 | -8.615850e-47 |
| Msa1221560 | Msa1353530 | 0.815299 | 9.927389e-52 | -8.615850e-47 |
| Msa1222970 | Msa1353530 | 0.837778 | 4.251518e-57 | -8.615850e-47 |
| Msa0524050 | Msa1353530 | 0.807359 | 5.254668e-50 | -8.615850e-47 |
| Msa0538700 | Msa1353530 | 0.817752 | 2.802292e-52 | -8.615850e-47 |
| Msa0557680 | Msa1353530 | 0.812317 | 4.504454e-51 | -8.615850e-47 |
| Msa0575250 | Msa1353530 | 0.806923 | 6.498284e-50 | -8.615850e-47 |
| Msa0581760 | Msa1353530 | 0.820204 | 7.762904e-53 | -8.615850e-47 |
| Msa0845590 | Msa1353530 | -0.815010 | 1.150934e-51 | -8.615850e-47 |
| Msa0946120 | Msa1353530 | 0.827360 | 1.632840e-54 | -8.615850e-47 |
| Msa0968320 | Msa1353530 | -0.808920 | 2.442955e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353530 | MtrunA17_Chr2g0303331 | 86.131 | 685 | 87 | 4 | 1 | 684 | 1 | 678 | 0.0 | 1162 |
| Msa1353530 | MtrunA17_Chr1g0170751 | 62.637 | 455 | 111 | 10 | 272 | 680 | 474 | 915 | 3.43e-159 | 483 |
| Msa1353530 | MtrunA17_Chr1g0170751 | 43.137 | 255 | 111 | 8 | 146 | 395 | 120 | 345 | 5.36e-37 | 148 |
| Msa1353530 | MtrunA17_Chr4g0018601 | 46.791 | 374 | 151 | 9 | 9 | 379 | 23 | 351 | 2.12e-79 | 265 |
| Msa1353530 | MtrunA17_Chr4g0018601 | 76.667 | 120 | 26 | 1 | 272 | 389 | 498 | 617 | 4.36e-51 | 187 |
| Msa1353530 | MtrunA17_Chr1g0185901 | 43.026 | 423 | 195 | 14 | 286 | 678 | 562 | 968 | 3.83e-74 | 258 |
| Msa1353530 | MtrunA17_Chr2g0281961 | 55.280 | 161 | 35 | 7 | 28 | 188 | 22 | 145 | 5.22e-37 | 135 |
| Msa1353530 | MtrunA17_Chr1g0181651 | 39.216 | 153 | 84 | 3 | 523 | 675 | 759 | 902 | 1.59e-20 | 96.7 |
| Msa1353530 | MtrunA17_Chr2g0333291 | 31.224 | 237 | 139 | 8 | 451 | 675 | 602 | 826 | 6.05e-20 | 94.7 |
| Msa1353530 | MtrunA17_Chr8g0358231 | 42.169 | 83 | 47 | 1 | 593 | 675 | 31 | 112 | 9.63e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353530 | AT3G54760.2 | 37.716 | 289 | 154 | 5 | 385 | 672 | 471 | 734 | 3.26e-41 | 161 |
| Msa1353530 | AT3G54760.1 | 37.716 | 289 | 154 | 5 | 385 | 672 | 502 | 765 | 3.69e-41 | 161 |
| Msa1353530 | AT5G02950.1 | 47.561 | 82 | 43 | 0 | 592 | 673 | 542 | 623 | 4.47e-16 | 82.4 |
| Msa1353530 | AT5G02950.2 | 47.561 | 82 | 43 | 0 | 592 | 673 | 542 | 623 | 4.47e-16 | 82.4 |
Find 154 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGGAAATGTCAAATTT+TGG | 0.102293 | tig0013554:+715 | Msa1353530:CDS |
| CTTTGATTATTTAAATTTCT+AGG | 0.188454 | tig0013554:-1437 | Msa1353530:intergenic |
| GCTAAGAGGTTCAAAATATT+TGG | 0.188718 | tig0013554:+2475 | Msa1353530:CDS |
| ACTTGATCAAATGAGAAAAT+TGG | 0.205396 | tig0013554:+2718 | Msa1353530:three_prime_UTR |
| AACAAAATGTTTAGGCGTTT+TGG | 0.208672 | tig0013554:+2355 | Msa1353530:CDS |
| AGCAGCCTTCCCATGATAAT+TGG | 0.226511 | tig0013554:-2576 | Msa1353530:intergenic |
| CATCCAGCAAAGAAGGAAAA+AGG | 0.274469 | tig0013554:+1503 | Msa1353530:CDS |
| GATCGATTCGATATTGAATA+TGG | 0.291467 | tig0013554:+789 | Msa1353530:CDS |
| AACCAAACTGCCGAGGTTAA+AGG | 0.302938 | tig0013554:+1027 | Msa1353530:CDS |
| CAATTAACTTGGGCTGGCTT+TGG | 0.312666 | tig0013554:-2187 | Msa1353530:intergenic |
| ATTCAATACTATACACGAAT+TGG | 0.317023 | tig0013554:+653 | Msa1353530:CDS |
| TTAATTGTGGGCCCTATTCC+TGG | 0.320932 | tig0013554:+2203 | Msa1353530:CDS |
| GAGGATTTGAGTGGAGAAGC+TGG | 0.330533 | tig0013554:+469 | Msa1353530:CDS |
| TGCACTATGGAGGATGCTGC+TGG | 0.334939 | tig0013554:+577 | Msa1353530:CDS |
| ATATAACCAGGAGGTTTGTT+AGG | 0.362436 | tig0013554:-2259 | Msa1353530:intergenic |
| TGCTGGGGCCGCAGGTCACC+CGG | 0.366796 | tig0013554:+594 | Msa1353530:CDS |
| TTCGGCAATGGTTGTTGCAC+TGG | 0.373071 | tig0013554:-2124 | Msa1353530:intergenic |
| GGATAGAGTGGTTTCGGAAA+GGG | 0.380946 | tig0013554:+519 | Msa1353530:CDS |
| TTCCTCAATATCAACAATAC+TGG | 0.388085 | tig0013554:-701 | Msa1353530:intergenic |
| TTGTTGGACTCCAGTTCATC+TGG | 0.392081 | tig0013554:+1571 | Msa1353530:CDS |
| GATGACTTCAAAATGCAAAC+TGG | 0.393363 | tig0013554:+1641 | Msa1353530:CDS |
| CTCCAGTATTGTTGATATTG+AGG | 0.397240 | tig0013554:+699 | Msa1353530:CDS |
| TTAACTTGGGCTGGCTTTGG+TGG | 0.399327 | tig0013554:-2184 | Msa1353530:intergenic |
| GGGTAGTTTCTTCTTCCTCA+TGG | 0.403985 | tig0013554:-2014 | Msa1353530:intergenic |
| CTCAAAGCTTTGAACACGCT+TGG | 0.409796 | tig0013554:-2532 | Msa1353530:intergenic |
| ATGGTGCATCCAACTTTAGA+TGG | 0.412565 | tig0013554:+2628 | Msa1353530:three_prime_UTR |
| GCTTGTATGTGCAGGATTGC+TGG | 0.412921 | tig0013554:+1160 | Msa1353530:intron |
| TAAGTTGGATAGAGTGGTTT+CGG | 0.414914 | tig0013554:+513 | Msa1353530:CDS |
| TACCTTTAACCTCGGCAGTT+TGG | 0.419407 | tig0013554:-1029 | Msa1353530:intergenic |
| CTAATTTCTACTAACATAGT+TGG | 0.421937 | tig0013554:+2825 | Msa1353530:three_prime_UTR |
| GATTAAAGATCCAATTATCA+TGG | 0.426616 | tig0013554:+2566 | Msa1353530:exon |
| CAAACCTTAACAAAATGTTT+AGG | 0.433748 | tig0013554:+2347 | Msa1353530:CDS |
| ACAAATTCATCGTTTACAAC+TGG | 0.435206 | tig0013554:+1701 | Msa1353530:CDS |
| AAACTACCCATAGCTGGAAC+TGG | 0.437164 | tig0013554:+2028 | Msa1353530:CDS |
| GGCCCACAATTAACTTGGGC+TGG | 0.445403 | tig0013554:-2193 | Msa1353530:intergenic |
| GCTGGGGCCGCAGGTCACCC+GGG | 0.446440 | tig0013554:+595 | Msa1353530:CDS |
| AGTTGTAAACGATGAATTTG+TGG | 0.447057 | tig0013554:-1699 | Msa1353530:intergenic |
| GAATCCAGAGAACCATTCAT+TGG | 0.447830 | tig0013554:-1536 | Msa1353530:intergenic |
| ATTCTCCAGACGGTGATTGT+TGG | 0.448044 | tig0013554:+1555 | Msa1353530:CDS |
| TCAGGTGAAACCAGATGAAC+TGG | 0.448957 | tig0013554:-1581 | Msa1353530:intergenic |
| GAGGATGCTGCTGGGGCCGC+AGG | 0.453197 | tig0013554:+586 | Msa1353530:CDS |
| CACCTGAACATTCCAAGAAA+AGG | 0.455137 | tig0013554:+1597 | Msa1353530:CDS |
| TACTATGCATCCAGCAAAGA+AGG | 0.457588 | tig0013554:+1496 | Msa1353530:CDS |
| GCAACAGCATGTGGCTCCCT+TGG | 0.457839 | tig0013554:-1250 | Msa1353530:intergenic |
| TGATCGTCTGTATTAACAAC+AGG | 0.458528 | tig0013554:-1407 | Msa1353530:intergenic |
| AACTAGGACTGTGCTGAGTT+AGG | 0.459837 | tig0013554:+2774 | Msa1353530:three_prime_UTR |
| AGGATTTGAGTGGAGAAGCT+GGG | 0.462030 | tig0013554:+470 | Msa1353530:CDS |
| CGCAGTTAAGTTGGATAGAG+TGG | 0.462681 | tig0013554:+507 | Msa1353530:CDS |
| AAAGCGTAAATATAATTTCA+AGG | 0.466648 | tig0013554:+1472 | Msa1353530:CDS |
| GCACTATGGAGGATGCTGCT+GGG | 0.467873 | tig0013554:+578 | Msa1353530:CDS |
| AGACCCAATGAATGGTTCTC+TGG | 0.468093 | tig0013554:+1532 | Msa1353530:CDS |
| AATAGGGCCCACAATTAACT+TGG | 0.469238 | tig0013554:-2198 | Msa1353530:intergenic |
| TATAGAAATCTTAGACATGA+TGG | 0.469572 | tig0013554:+2880 | Msa1353530:three_prime_UTR |
| TGGCACTGACTCTTGCACTA+TGG | 0.471756 | tig0013554:+564 | Msa1353530:CDS |
| GAAACATCCAATCTATTCTC+AGG | 0.477155 | tig0013554:-1788 | Msa1353530:intergenic |
| TTTGTTAAGGTTTGTTTCTG+AGG | 0.484036 | tig0013554:-2338 | Msa1353530:intergenic |
| AAAGCTTACCCATCTAAAGT+TGG | 0.486677 | tig0013554:-2637 | Msa1353530:intergenic |
| GAATGCCGCCGCAGTTAAGT+TGG | 0.497236 | tig0013554:+498 | Msa1353530:CDS |
| TGGATAGAGTGGTTTCGGAA+AGG | 0.503876 | tig0013554:+518 | Msa1353530:CDS |
| ATTGTGAACGATAAAGTTGA+TGG | 0.506149 | tig0013554:+814 | Msa1353530:CDS |
| ATTTCACGTACGGATGAACT+TGG | 0.508981 | tig0013554:+1989 | Msa1353530:CDS |
| AACAAATCCAGTTCCAGCTA+TGG | 0.509497 | tig0013554:-2035 | Msa1353530:intergenic |
| GAGAAAAGTATGTTCTCCAT+GGG | 0.509518 | tig0013554:-1900 | Msa1353530:intergenic |
| AAGAAGAAACTACCCATAGC+TGG | 0.514324 | tig0013554:+2022 | Msa1353530:CDS |
| CATTACTTGCTTTACAAACA+AGG | 0.517162 | tig0013554:-2608 | Msa1353530:intergenic |
| AGCCAGCCCAAGTTAATTGT+GGG | 0.520785 | tig0013554:+2191 | Msa1353530:CDS |
| TTGTTAAGGTTTGTTTCTGA+GGG | 0.523108 | tig0013554:-2337 | Msa1353530:intergenic |
| CGCTTGGAGTGTAATTAAGC+TGG | 0.523239 | tig0013554:-2516 | Msa1353530:intergenic |
| TTAGAGGTTTATTATATCCA+TGG | 0.524645 | tig0013554:+366 | Msa1353530:exon |
| AAGTTCATAACAAGCTCAGC+AGG | 0.528013 | tig0013554:-2295 | Msa1353530:intergenic |
| GGAGTCAAATATGAGGCAAA+AGG | 0.528193 | tig0013554:+1298 | Msa1353530:CDS |
| AATCCAGAGAACCATTCATT+GGG | 0.530099 | tig0013554:-1535 | Msa1353530:intergenic |
| CACTATGGAGGATGCTGCTG+GGG | 0.531939 | tig0013554:+579 | Msa1353530:CDS |
| GCGAGGTATCAATCAATAGT+TGG | 0.532321 | tig0013554:+544 | Msa1353530:CDS |
| ATTAGTATTTATACTCAACT+AGG | 0.533842 | tig0013554:+2758 | Msa1353530:three_prime_UTR |
| AGATATCTTACCTTTAACCT+CGG | 0.536941 | tig0013554:-1037 | Msa1353530:intergenic |
| AAGCCAGCCCAAGTTAATTG+TGG | 0.539378 | tig0013554:+2190 | Msa1353530:CDS |
| CTGTAATTGTGAGTGCCGAT+TGG | 0.540957 | tig0013554:+1960 | Msa1353530:CDS |
| TGAGAAAAGTATGTTCTCCA+TGG | 0.541750 | tig0013554:-1901 | Msa1353530:intergenic |
| AGTAAGCAGCCGTGCAAGAG+TGG | 0.544946 | tig0013554:+2411 | Msa1353530:CDS |
| ACGTGAAATCTCTTTCCAAT+CGG | 0.545841 | tig0013554:-1975 | Msa1353530:intergenic |
| TAATTGTGGGCCCTATTCCT+GGG | 0.547307 | tig0013554:+2204 | Msa1353530:CDS |
| GCTAATGCAATTGCAGAAGA+AGG | 0.548428 | tig0013554:+1212 | Msa1353530:CDS |
| TCTTAAAGACCACTCTTGCA+CGG | 0.549177 | tig0013554:-2420 | Msa1353530:intergenic |
| GGAGTCCAACAATCACCGTC+TGG | 0.550831 | tig0013554:-1560 | Msa1353530:intergenic |
| GCAGATGCAGAGGTAGCGCT+TGG | 0.551943 | tig0013554:+2448 | Msa1353530:CDS |
| CAGATAGTTGAGGATTTGAG+TGG | 0.552151 | tig0013554:+460 | Msa1353530:CDS |
| ACAAATCCAGTTCCAGCTAT+GGG | 0.556927 | tig0013554:-2034 | Msa1353530:intergenic |
| TAGACGAGTCTGTGGAATGT+GGG | 0.561456 | tig0013554:+434 | Msa1353530:CDS |
| CAACTGGTGACTGTATTCGT+AGG | 0.563107 | tig0013554:+1717 | Msa1353530:CDS |
| GGGATGTCAGACCCAATGAA+TGG | 0.563115 | tig0013554:+1524 | Msa1353530:CDS |
| TCAGCAAACAGTGATGTCCC+CGG | 0.563331 | tig0013554:-613 | Msa1353530:intergenic |
| TTGGAAAGAGATTTCACGTA+CGG | 0.566404 | tig0013554:+1979 | Msa1353530:CDS |
| TAGCGCTTGGTAGTGCTAAG+AGG | 0.567148 | tig0013554:+2461 | Msa1353530:CDS |
| AGACGAGTCTGTGGAATGTG+GGG | 0.568309 | tig0013554:+435 | Msa1353530:CDS |
| GGCACTCAAATTACTGACCA+AGG | 0.569607 | tig0013554:+1233 | Msa1353530:CDS |
| CTTGTTTGTAAAGCAAGTAA+TGG | 0.570842 | tig0013554:+2609 | Msa1353530:three_prime_UTR |
| ATTAAAGATCCAATTATCAT+GGG | 0.573083 | tig0013554:+2567 | Msa1353530:exon |
| AGGTATACATCCACAGTTGT+TGG | 0.573775 | tig0013554:+403 | Msa1353530:CDS |
| TCAACGAGGAGTCAAATATG+AGG | 0.576367 | tig0013554:+1291 | Msa1353530:CDS |
| AGTTAGGAAAGTTAGTTACA+TGG | 0.577193 | tig0013554:+2790 | Msa1353530:three_prime_UTR |
| TAAGAAGCGTGCAGATGCAG+AGG | 0.578058 | tig0013554:+2438 | Msa1353530:CDS |
| CTGGGGCCGCAGGTCACCCG+GGG | 0.578280 | tig0013554:+596 | Msa1353530:CDS |
| AGAGCAAGAATGCGTTGACA+AGG | 0.578746 | tig0013554:+1325 | Msa1353530:CDS |
| ATGACTTCAAAATGCAAACT+GGG | 0.578797 | tig0013554:+1642 | Msa1353530:CDS |
| CATGCTGTTGCGTGATGGAA+AGG | 0.580037 | tig0013554:+1262 | Msa1353530:CDS |
| TGATGTCCCCGGGTGACCTG+CGG | 0.582580 | tig0013554:-602 | Msa1353530:intergenic |
| CCATGGAAGAAGTAGAAAAG+AGG | 0.582789 | tig0013554:+383 | Msa1353530:exon |
| ACATTCCACAGACTCGTCTA+CGG | 0.585735 | tig0013554:-431 | Msa1353530:intergenic |
| CAGCAAACAGTGATGTCCCC+GGG | 0.587981 | tig0013554:-612 | Msa1353530:intergenic |
| AGTTGAAAAGTGTAATGCAT+TGG | 0.593632 | tig0013554:+876 | Msa1353530:CDS |
| AAGATCCAATTATCATGGGA+AGG | 0.597025 | tig0013554:+2571 | Msa1353530:three_prime_UTR |
| TGGTGCATCCAACTTTAGAT+GGG | 0.597452 | tig0013554:+2629 | Msa1353530:three_prime_UTR |
| AACTGGTGACTGTATTCGTA+GGG | 0.601493 | tig0013554:+1718 | Msa1353530:CDS |
| AGCCACATGCTGTTGCGTGA+TGG | 0.602204 | tig0013554:+1257 | Msa1353530:CDS |
| TTCCATCACGCAACAGCATG+TGG | 0.602267 | tig0013554:-1259 | Msa1353530:intergenic |
| CAGAAGACAGATGTAGACAT+TGG | 0.604824 | tig0013554:+1758 | Msa1353530:CDS |
| TATCAACAATACTGGAGTTG+CGG | 0.605835 | tig0013554:-693 | Msa1353530:intergenic |
| GTTAATACAGACGATCAAGC+TGG | 0.606211 | tig0013554:+1413 | Msa1353530:CDS |
| CACTGACTCTTGCACTATGG+AGG | 0.606778 | tig0013554:+567 | Msa1353530:CDS |
| CTATACACGAATTGGAATGA+CGG | 0.608885 | tig0013554:+661 | Msa1353530:CDS |
| GAGACTCCTAACAAACCTCC+TGG | 0.609889 | tig0013554:+2253 | Msa1353530:CDS |
| GTGACTTGCATTGTACAGAC+TGG | 0.613441 | tig0013554:+2074 | Msa1353530:CDS |
| GTCATCATCAAAGTGATCGA+AGG | 0.615503 | tig0013554:-1624 | Msa1353530:intergenic |
| ATAGGGCCCACAATTAACTT+GGG | 0.615525 | tig0013554:-2197 | Msa1353530:intergenic |
| GCATTCTCATCTATATAACC+AGG | 0.616725 | tig0013554:-2271 | Msa1353530:intergenic |
| GGTTCTCTGGATTCTCCAGA+CGG | 0.624667 | tig0013554:+1545 | Msa1353530:CDS |
| GGAGCAAGTAATAGCTGACA+AGG | 0.626455 | tig0013554:+897 | Msa1353530:CDS |
| GCTATCTTCACTTCAGTGTG+TGG | 0.627339 | tig0013554:+1868 | Msa1353530:CDS |
| GAACAATCTGATGTACGCGA+GGG | 0.634786 | tig0013554:+949 | Msa1353530:CDS |
| GCTGGTATCTATTGACCAAG+AGG | 0.635431 | tig0013554:+1178 | Msa1353530:CDS |
| AAAGTTAGTTACATGGTCAG+AGG | 0.636965 | tig0013554:+2797 | Msa1353530:three_prime_UTR |
| TACGGTTTCACCAACAACTG+TGG | 0.637008 | tig0013554:-413 | Msa1353530:intergenic |
| GTAGACGAGTCTGTGGAATG+TGG | 0.638760 | tig0013554:+433 | Msa1353530:CDS |
| TGAACAATCTGATGTACGCG+AGG | 0.646674 | tig0013554:+948 | Msa1353530:CDS |
| GAGCAAGAATGCGTTGACAA+GGG | 0.649575 | tig0013554:+1326 | Msa1353530:CDS |
| TGAGGGAACAGATTTGAACT+CGG | 0.650512 | tig0013554:-2320 | Msa1353530:intergenic |
| CGAGGAACAAGATTTGCGTG+AGG | 0.650820 | tig0013554:+1367 | Msa1353530:CDS |
| AACAATCTGATGTACGCGAG+GGG | 0.651223 | tig0013554:+950 | Msa1353530:CDS |
| TGAAACCGTAGACGAGTCTG+TGG | 0.661034 | tig0013554:+426 | Msa1353530:CDS |
| GACGAGTCTGTGGAATGTGG+GGG | 0.663276 | tig0013554:+436 | Msa1353530:CDS |
| GCACTCAAATTACTGACCAA+GGG | 0.664985 | tig0013554:+1234 | Msa1353530:CDS |
| TCTATCCAACTTAACTGCGG+CGG | 0.665386 | tig0013554:-503 | Msa1353530:intergenic |
| CACTCTATCCAACTTAACTG+CGG | 0.673432 | tig0013554:-506 | Msa1353530:intergenic |
| AGCAATGAACCAAACTGCCG+AGG | 0.673571 | tig0013554:+1020 | Msa1353530:CDS |
| ACAGACTGGGTCATTGACAA+TGG | 0.673767 | tig0013554:+2088 | Msa1353530:CDS |
| AGAAAAGTATGTTCTCCATG+GGG | 0.678685 | tig0013554:-1899 | Msa1353530:intergenic |
| ATTGTACATGAAGTTGTCTG+TGG | 0.678962 | tig0013554:+847 | Msa1353530:CDS |
| TTCTCATCTATATAACCAGG+AGG | 0.679754 | tig0013554:-2268 | Msa1353530:intergenic |
| CGGATGAACTTGGCACCATG+AGG | 0.680302 | tig0013554:+1999 | Msa1353530:CDS |
| TGGTTTCGGAAAGGGAAGCG+AGG | 0.690904 | tig0013554:+527 | Msa1353530:CDS |
| TGACTTGCATTGTACAGACT+GGG | 0.698935 | tig0013554:+2075 | Msa1353530:CDS |
| ATAGCTGACAAGGATGTGAG+TGG | 0.749474 | tig0013554:+907 | Msa1353530:CDS |
| TTAGATGTTGAAGATCAACA+AGG | 0.767605 | tig0013554:+982 | Msa1353530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATTTTTTAAATAA+AGG | + | tig0013554:2931-2950 | Msa1353530:three_prime_UTR | 0.0% |
| !!! | TTTTAGAAAATAATTGCATT+AGG | + | tig0013554:246-265 | Msa1353530:intron | 15.0% |
| !! | TTTAGAAAATAATTGCATTA+GGG | + | tig0013554:247-266 | Msa1353530:intron | 15.0% |
| !!! | TAATATTTTTGTTGATATCA+TGG | + | tig0013554:762-781 | Msa1353530:CDS | 15.0% |
| !! | CTTTGATTATTTAAATTTCT+AGG | - | tig0013554:1440-1459 | Msa1353530:intergenic | 15.0% |
| !! | AAAAAGATATGAATATTTCA+TGG | - | tig0013554:2907-2926 | Msa1353530:intergenic | 15.0% |
| !! | TAGATTTAATTAATTGAGCT+TGG | + | tig0013554:277-296 | Msa1353530:intron | 20.0% |
| !!! | AGATATAAAGAAAGTTTTAG+AGG | + | tig0013554:350-369 | Msa1353530:intron | 20.0% |
| !! | ATCAACAAAAATATTAGAGT+TGG | - | tig0013554:758-777 | Msa1353530:intergenic | 20.0% |
| !! | AAAGCGTAAATATAATTTCA+AGG | + | tig0013554:1472-1491 | Msa1353530:CDS | 20.0% |
| !! | ATTAAAGATCCAATTATCAT+GGG | + | tig0013554:2567-2586 | Msa1353530:exon | 20.0% |
| !! | ATTAGTATTTATACTCAACT+AGG | + | tig0013554:2758-2777 | Msa1353530:three_prime_UTR | 20.0% |
| !!! | CTCTAACTTTTTTTTCACTT+TGG | + | tig0013554:80-99 | Msa1353530:intron | 25.0% |
| ! | TAACTAACACAGAAAACAAA+GGG | - | tig0013554:169-188 | Msa1353530:intergenic | 25.0% |
| !!! | TTTCTAAAATCAACCTAGTT+TGG | - | tig0013554:235-254 | Msa1353530:intergenic | 25.0% |
| ! | TTAGAGGTTTATTATATCCA+TGG | + | tig0013554:366-385 | Msa1353530:exon | 25.0% |
| ! | ATTCAATACTATACACGAAT+TGG | + | tig0013554:653-672 | Msa1353530:CDS | 25.0% |
| !! | ATTGAGGAAATGTCAAATTT+TGG | + | tig0013554:715-734 | Msa1353530:CDS | 25.0% |
| !! | TTGAGGAAATGTCAAATTTT+GGG | + | tig0013554:716-735 | Msa1353530:CDS | 25.0% |
| ! | CAAACCTTAACAAAATGTTT+AGG | + | tig0013554:2347-2366 | Msa1353530:CDS | 25.0% |
| ! | GATTAAAGATCCAATTATCA+TGG | + | tig0013554:2566-2585 | Msa1353530:exon | 25.0% |
| !!! | ACCTTTTTTGCAAATTACTT+TGG | + | tig0013554:2666-2685 | Msa1353530:three_prime_UTR | 25.0% |
| !! | ACCAAAGTAATTTGCAAAAA+AGG | - | tig0013554:2670-2689 | Msa1353530:intergenic | 25.0% |
| !! | TTTTGCAAATTACTTTGGTA+AGG | + | tig0013554:2671-2690 | Msa1353530:three_prime_UTR | 25.0% |
| ! | ACTTGATCAAATGAGAAAAT+TGG | + | tig0013554:2718-2737 | Msa1353530:three_prime_UTR | 25.0% |
| ! | CTAATTTCTACTAACATAGT+TGG | + | tig0013554:2825-2844 | Msa1353530:three_prime_UTR | 25.0% |
| ! | TATAGAAATCTTAGACATGA+TGG | + | tig0013554:2880-2899 | Msa1353530:three_prime_UTR | 25.0% |
| AAGTTCATTTCACAGAGAAT+TGG | - | tig0013554:35-54 | Msa1353530:intergenic | 30.0% | |
| AAAGTTAGAGTAATGTAACC+AGG | - | tig0013554:70-89 | Msa1353530:intergenic | 30.0% | |
| CTAACTAACACAGAAAACAA+AGG | - | tig0013554:170-189 | Msa1353530:intergenic | 30.0% | |
| CAAAAATTACTTGCCAAACT+AGG | + | tig0013554:219-238 | Msa1353530:intron | 30.0% | |
| TTCCTCAATATCAACAATAC+TGG | - | tig0013554:704-723 | Msa1353530:intergenic | 30.0% | |
| !! | GATCGATTCGATATTGAATA+TGG | + | tig0013554:789-808 | Msa1353530:CDS | 30.0% |
| ATTGTGAACGATAAAGTTGA+TGG | + | tig0013554:814-833 | Msa1353530:CDS | 30.0% | |
| ! | AGTTGAAAAGTGTAATGCAT+TGG | + | tig0013554:876-895 | Msa1353530:CDS | 30.0% |
| TTAGATGTTGAAGATCAACA+AGG | + | tig0013554:982-1001 | Msa1353530:CDS | 30.0% | |
| AGATATCTTACCTTTAACCT+CGG | - | tig0013554:1040-1059 | Msa1353530:intergenic | 30.0% | |
| ! | TAGCATCAAAATTTTCCTCT+TGG | - | tig0013554:1196-1215 | Msa1353530:intergenic | 30.0% |
| !!! | CAATTCATTTTTTGTTGACG+AGG | + | tig0013554:1349-1368 | Msa1353530:CDS | 30.0% |
| ATGACTTCAAAATGCAAACT+GGG | + | tig0013554:1642-1661 | Msa1353530:CDS | 30.0% | |
| AGTTGTAAACGATGAATTTG+TGG | - | tig0013554:1702-1721 | Msa1353530:intergenic | 30.0% | |
| ACAAATTCATCGTTTACAAC+TGG | + | tig0013554:1701-1720 | Msa1353530:CDS | 30.0% | |
| ! | TGTTTTTCCTGAGAATAGAT+TGG | + | tig0013554:1781-1800 | Msa1353530:CDS | 30.0% |
| !!! | GAATTTTTTACCCAGGAATA+GGG | - | tig0013554:2217-2236 | Msa1353530:intergenic | 30.0% |
| !!! | AGAATTTTTTACCCAGGAAT+AGG | - | tig0013554:2218-2237 | Msa1353530:intergenic | 30.0% |
| !!! | GCTTTTAGAATTTTTTACCC+AGG | - | tig0013554:2224-2243 | Msa1353530:intergenic | 30.0% |
| !! | TTGTTAAGGTTTGTTTCTGA+GGG | - | tig0013554:2340-2359 | Msa1353530:intergenic | 30.0% |
| !! | TTTGTTAAGGTTTGTTTCTG+AGG | - | tig0013554:2341-2360 | Msa1353530:intergenic | 30.0% |
| ! | AACGCCTAAACATTTTGTTA+AGG | - | tig0013554:2354-2373 | Msa1353530:intergenic | 30.0% |
| ! | AACAAAATGTTTAGGCGTTT+TGG | + | tig0013554:2355-2374 | Msa1353530:CDS | 30.0% |
| GCTAAGAGGTTCAAAATATT+TGG | + | tig0013554:2475-2494 | Msa1353530:CDS | 30.0% | |
| CATTACTTGCTTTACAAACA+AGG | - | tig0013554:2611-2630 | Msa1353530:intergenic | 30.0% | |
| CTTGTTTGTAAAGCAAGTAA+TGG | + | tig0013554:2609-2628 | Msa1353530:three_prime_UTR | 30.0% | |
| AGTTAGGAAAGTTAGTTACA+TGG | + | tig0013554:2790-2809 | Msa1353530:three_prime_UTR | 30.0% | |
| CATTCTCATTCGCAATCTTT+CGG | + | tig0013554:1-20 | Msa1353530:five_prime_UTR | 35.0% | |
| TTAGAGTAATGTAACCAGGT+AGG | - | tig0013554:66-85 | Msa1353530:intergenic | 35.0% | |
| ! | TAAGTTGGATAGAGTGGTTT+CGG | + | tig0013554:513-532 | Msa1353530:CDS | 35.0% |
| CTATACACGAATTGGAATGA+CGG | + | tig0013554:661-680 | Msa1353530:CDS | 35.0% | |
| TATCAACAATACTGGAGTTG+CGG | - | tig0013554:696-715 | Msa1353530:intergenic | 35.0% | |
| CTCCAGTATTGTTGATATTG+AGG | + | tig0013554:699-718 | Msa1353530:CDS | 35.0% | |
| ATTGTACATGAAGTTGTCTG+TGG | + | tig0013554:847-866 | Msa1353530:CDS | 35.0% | |
| AAGATATCTGCTGATCTCAT+TGG | + | tig0013554:1051-1070 | Msa1353530:intron | 35.0% | |
| ! | CTTTCTTTCAGCTTAACTTG+TGG | + | tig0013554:1087-1106 | Msa1353530:intron | 35.0% |
| TGATCGTCTGTATTAACAAC+AGG | - | tig0013554:1410-1429 | Msa1353530:intergenic | 35.0% | |
| ATCCAGCAAAGAAGGAAAAA+GGG | + | tig0013554:1504-1523 | Msa1353530:CDS | 35.0% | |
| AATCCAGAGAACCATTCATT+GGG | - | tig0013554:1538-1557 | Msa1353530:intergenic | 35.0% | |
| GATGACTTCAAAATGCAAAC+TGG | + | tig0013554:1641-1660 | Msa1353530:CDS | 35.0% | |
| GAAACATCCAATCTATTCTC+AGG | - | tig0013554:1791-1810 | Msa1353530:intergenic | 35.0% | |
| ! | TCATCATGCTCAACAGTTTT+AGG | - | tig0013554:1815-1834 | Msa1353530:intergenic | 35.0% |
| ! | AGAAAAGTATGTTCTCCATG+GGG | - | tig0013554:1902-1921 | Msa1353530:intergenic | 35.0% |
| ! | GAGAAAAGTATGTTCTCCAT+GGG | - | tig0013554:1903-1922 | Msa1353530:intergenic | 35.0% |
| ! | TGAGAAAAGTATGTTCTCCA+TGG | - | tig0013554:1904-1923 | Msa1353530:intergenic | 35.0% |
| ! | GGAGAACATACTTTTCTCAA+TGG | + | tig0013554:1905-1924 | Msa1353530:CDS | 35.0% |
| ! | CATACTTTTCTCAATGGCAT+AGG | + | tig0013554:1911-1930 | Msa1353530:CDS | 35.0% |
| ACGTGAAATCTCTTTCCAAT+CGG | - | tig0013554:1978-1997 | Msa1353530:intergenic | 35.0% | |
| TTGGAAAGAGATTTCACGTA+CGG | + | tig0013554:1979-1998 | Msa1353530:CDS | 35.0% | |
| !!! | TTTTTCTGGTTTTTCGGCAA+TGG | - | tig0013554:2139-2158 | Msa1353530:intergenic | 35.0% |
| ATTGCCGAAAAACCAGAAAA+AGG | + | tig0013554:2138-2157 | Msa1353530:CDS | 35.0% | |
| !!! | TCGTCCTTTTTCTGGTTTTT+CGG | - | tig0013554:2145-2164 | Msa1353530:intergenic | 35.0% |
| ! | ATATAACCAGGAGGTTTGTT+AGG | - | tig0013554:2262-2281 | Msa1353530:intergenic | 35.0% |
| TTCTCATCTATATAACCAGG+AGG | - | tig0013554:2271-2290 | Msa1353530:intergenic | 35.0% | |
| GCATTCTCATCTATATAACC+AGG | - | tig0013554:2274-2293 | Msa1353530:intergenic | 35.0% | |
| AAGATCCAATTATCATGGGA+AGG | + | tig0013554:2571-2590 | Msa1353530:three_prime_UTR | 35.0% | |
| ! | AAAGCTTACCCATCTAAAGT+TGG | - | tig0013554:2640-2659 | Msa1353530:intergenic | 35.0% |
| AAAGTTAGTTACATGGTCAG+AGG | + | tig0013554:2797-2816 | Msa1353530:three_prime_UTR | 35.0% | |
| AGGGAGAAGCAAGAAACAAA+GGG | - | tig0013554:150-169 | Msa1353530:intergenic | 40.0% | |
| AAGGGAGAAGCAAGAAACAA+AGG | - | tig0013554:151-170 | Msa1353530:intergenic | 40.0% | |
| ! | CCTCTTTTCTACTTCTTCCA+TGG | - | tig0013554:386-405 | Msa1353530:intergenic | 40.0% |
| CCATGGAAGAAGTAGAAAAG+AGG | + | tig0013554:383-402 | Msa1353530:exon | 40.0% | |
| AGGTATACATCCACAGTTGT+TGG | + | tig0013554:403-422 | Msa1353530:CDS | 40.0% | |
| CAGATAGTTGAGGATTTGAG+TGG | + | tig0013554:460-479 | Msa1353530:CDS | 40.0% | |
| CACTCTATCCAACTTAACTG+CGG | - | tig0013554:509-528 | Msa1353530:intergenic | 40.0% | |
| ! | GCGAGGTATCAATCAATAGT+TGG | + | tig0013554:544-563 | Msa1353530:CDS | 40.0% |
| ATAGTGATGCTTGTATGTGC+AGG | + | tig0013554:1152-1171 | Msa1353530:intron | 40.0% | |
| GCTAATGCAATTGCAGAAGA+AGG | + | tig0013554:1212-1231 | Msa1353530:CDS | 40.0% | |
| GCACTCAAATTACTGACCAA+GGG | + | tig0013554:1234-1253 | Msa1353530:CDS | 40.0% | |
| TGGAAAGGAAAAACTCAACG+AGG | + | tig0013554:1277-1296 | Msa1353530:CDS | 40.0% | |
| TCAACGAGGAGTCAAATATG+AGG | + | tig0013554:1291-1310 | Msa1353530:CDS | 40.0% | |
| GGAGTCAAATATGAGGCAAA+AGG | + | tig0013554:1298-1317 | Msa1353530:CDS | 40.0% | |
| GTTAATACAGACGATCAAGC+TGG | + | tig0013554:1413-1432 | Msa1353530:CDS | 40.0% | |
| TACTATGCATCCAGCAAAGA+AGG | + | tig0013554:1496-1515 | Msa1353530:CDS | 40.0% | |
| CATCCAGCAAAGAAGGAAAA+AGG | + | tig0013554:1503-1522 | Msa1353530:CDS | 40.0% | |
| ! | ATCCCTTTTTCCTTCTTTGC+TGG | - | tig0013554:1509-1528 | Msa1353530:intergenic | 40.0% |
| GAATCCAGAGAACCATTCAT+TGG | - | tig0013554:1539-1558 | Msa1353530:intergenic | 40.0% | |
| CACCTGAACATTCCAAGAAA+AGG | + | tig0013554:1597-1616 | Msa1353530:CDS | 40.0% | |
| ! | CTCCTTTTCTTGGAATGTTC+AGG | - | tig0013554:1602-1621 | Msa1353530:intergenic | 40.0% |
| GTCATCATCAAAGTGATCGA+AGG | - | tig0013554:1627-1646 | Msa1353530:intergenic | 40.0% | |
| AACTGGTGACTGTATTCGTA+GGG | + | tig0013554:1718-1737 | Msa1353530:CDS | 40.0% | |
| CAGAAGACAGATGTAGACAT+TGG | + | tig0013554:1758-1777 | Msa1353530:CDS | 40.0% | |
| ATTTCACGTACGGATGAACT+TGG | + | tig0013554:1989-2008 | Msa1353530:CDS | 40.0% | |
| AAGAAGAAACTACCCATAGC+TGG | + | tig0013554:2022-2041 | Msa1353530:CDS | 40.0% | |
| ACAAATCCAGTTCCAGCTAT+GGG | - | tig0013554:2037-2056 | Msa1353530:intergenic | 40.0% | |
| AACAAATCCAGTTCCAGCTA+TGG | - | tig0013554:2038-2057 | Msa1353530:intergenic | 40.0% | |
| ! | TGACTTGCATTGTACAGACT+GGG | + | tig0013554:2075-2094 | Msa1353530:CDS | 40.0% |
| ! | CAAGTTGTTCGTCCTTTTTC+TGG | - | tig0013554:2153-2172 | Msa1353530:intergenic | 40.0% |
| ATAGGGCCCACAATTAACTT+GGG | - | tig0013554:2200-2219 | Msa1353530:intergenic | 40.0% | |
| AATAGGGCCCACAATTAACT+TGG | - | tig0013554:2201-2220 | Msa1353530:intergenic | 40.0% | |
| AAGTTCATAACAAGCTCAGC+AGG | - | tig0013554:2298-2317 | Msa1353530:intergenic | 40.0% | |
| TGAGGGAACAGATTTGAACT+CGG | - | tig0013554:2323-2342 | Msa1353530:intergenic | 40.0% | |
| !!! | TAGGCGTTTTGGAGAACTAA+AGG | + | tig0013554:2366-2385 | Msa1353530:CDS | 40.0% |
| TCTTAAAGACCACTCTTGCA+CGG | - | tig0013554:2423-2442 | Msa1353530:intergenic | 40.0% | |
| ATGGTGCATCCAACTTTAGA+TGG | + | tig0013554:2628-2647 | Msa1353530:three_prime_UTR | 40.0% | |
| TGGTGCATCCAACTTTAGAT+GGG | + | tig0013554:2629-2648 | Msa1353530:three_prime_UTR | 40.0% | |
| GAACTTCAACTCAACCTACC+TGG | + | tig0013554:49-68 | Msa1353530:five_prime_UTR | 45.0% | |
| TACGGTTTCACCAACAACTG+TGG | - | tig0013554:416-435 | Msa1353530:intergenic | 45.0% | |
| ACATTCCACAGACTCGTCTA+CGG | - | tig0013554:434-453 | Msa1353530:intergenic | 45.0% | |
| TAGACGAGTCTGTGGAATGT+GGG | + | tig0013554:434-453 | Msa1353530:CDS | 45.0% | |
| AGGATTTGAGTGGAGAAGCT+GGG | + | tig0013554:470-489 | Msa1353530:CDS | 45.0% | |
| TCTATCCAACTTAACTGCGG+CGG | - | tig0013554:506-525 | Msa1353530:intergenic | 45.0% | |
| !! | CGCAGTTAAGTTGGATAGAG+TGG | + | tig0013554:507-526 | Msa1353530:CDS | 45.0% |
| TGGATAGAGTGGTTTCGGAA+AGG | + | tig0013554:518-537 | Msa1353530:CDS | 45.0% | |
| GGATAGAGTGGTTTCGGAAA+GGG | + | tig0013554:519-538 | Msa1353530:CDS | 45.0% | |
| GGAGCAAGTAATAGCTGACA+AGG | + | tig0013554:897-916 | Msa1353530:CDS | 45.0% | |
| ATAGCTGACAAGGATGTGAG+TGG | + | tig0013554:907-926 | Msa1353530:CDS | 45.0% | |
| TGAACAATCTGATGTACGCG+AGG | + | tig0013554:948-967 | Msa1353530:CDS | 45.0% | |
| GAACAATCTGATGTACGCGA+GGG | + | tig0013554:949-968 | Msa1353530:CDS | 45.0% | |
| AACAATCTGATGTACGCGAG+GGG | + | tig0013554:950-969 | Msa1353530:CDS | 45.0% | |
| AACCAAACTGCCGAGGTTAA+AGG | + | tig0013554:1027-1046 | Msa1353530:CDS | 45.0% | |
| TACCTTTAACCTCGGCAGTT+TGG | - | tig0013554:1032-1051 | Msa1353530:intergenic | 45.0% | |
| GCTGGTATCTATTGACCAAG+AGG | + | tig0013554:1178-1197 | Msa1353530:CDS | 45.0% | |
| GGCACTCAAATTACTGACCA+AGG | + | tig0013554:1233-1252 | Msa1353530:CDS | 45.0% | |
| ! | AGAGCAAGAATGCGTTGACA+AGG | + | tig0013554:1325-1344 | Msa1353530:CDS | 45.0% |
| ! | GAGCAAGAATGCGTTGACAA+GGG | + | tig0013554:1326-1345 | Msa1353530:CDS | 45.0% |
| AGACCCAATGAATGGTTCTC+TGG | + | tig0013554:1532-1551 | Msa1353530:CDS | 45.0% | |
| ATTCTCCAGACGGTGATTGT+TGG | + | tig0013554:1555-1574 | Msa1353530:CDS | 45.0% | |
| TTGTTGGACTCCAGTTCATC+TGG | + | tig0013554:1571-1590 | Msa1353530:CDS | 45.0% | |
| TCAGGTGAAACCAGATGAAC+TGG | - | tig0013554:1584-1603 | Msa1353530:intergenic | 45.0% | |
| CAACTGGTGACTGTATTCGT+AGG | + | tig0013554:1717-1736 | Msa1353530:CDS | 45.0% | |
| GCTATCTTCACTTCAGTGTG+TGG | + | tig0013554:1868-1887 | Msa1353530:CDS | 45.0% | |
| !! | CTGTAATTGTGAGTGCCGAT+TGG | + | tig0013554:1960-1979 | Msa1353530:CDS | 45.0% |
| GGGTAGTTTCTTCTTCCTCA+TGG | - | tig0013554:2017-2036 | Msa1353530:intergenic | 45.0% | |
| AAACTACCCATAGCTGGAAC+TGG | + | tig0013554:2028-2047 | Msa1353530:CDS | 45.0% | |
| ! | GTGACTTGCATTGTACAGAC+TGG | + | tig0013554:2074-2093 | Msa1353530:CDS | 45.0% |
| ACAGACTGGGTCATTGACAA+TGG | + | tig0013554:2088-2107 | Msa1353530:CDS | 45.0% | |
| !! | CAATTAACTTGGGCTGGCTT+TGG | - | tig0013554:2190-2209 | Msa1353530:intergenic | 45.0% |
| AAGCCAGCCCAAGTTAATTG+TGG | + | tig0013554:2190-2209 | Msa1353530:CDS | 45.0% | |
| AGCCAGCCCAAGTTAATTGT+GGG | + | tig0013554:2191-2210 | Msa1353530:CDS | 45.0% | |
| TTAATTGTGGGCCCTATTCC+TGG | + | tig0013554:2203-2222 | Msa1353530:CDS | 45.0% | |
| TAATTGTGGGCCCTATTCCT+GGG | + | tig0013554:2204-2223 | Msa1353530:CDS | 45.0% | |
| CGCTTGGAGTGTAATTAAGC+TGG | - | tig0013554:2519-2538 | Msa1353530:intergenic | 45.0% | |
| !! | CTCAAAGCTTTGAACACGCT+TGG | - | tig0013554:2535-2554 | Msa1353530:intergenic | 45.0% |
| AGCAGCCTTCCCATGATAAT+TGG | - | tig0013554:2579-2598 | Msa1353530:intergenic | 45.0% | |
| AACTAGGACTGTGCTGAGTT+AGG | + | tig0013554:2774-2793 | Msa1353530:three_prime_UTR | 45.0% | |
| TGAAACCGTAGACGAGTCTG+TGG | + | tig0013554:426-445 | Msa1353530:CDS | 50.0% | |
| GTAGACGAGTCTGTGGAATG+TGG | + | tig0013554:433-452 | Msa1353530:CDS | 50.0% | |
| AGACGAGTCTGTGGAATGTG+GGG | + | tig0013554:435-454 | Msa1353530:CDS | 50.0% | |
| ATGTGGGGGTCAGATAGTTG+AGG | + | tig0013554:450-469 | Msa1353530:CDS | 50.0% | |
| GAGGATTTGAGTGGAGAAGC+TGG | + | tig0013554:469-488 | Msa1353530:CDS | 50.0% | |
| !! | TGGCACTGACTCTTGCACTA+TGG | + | tig0013554:564-583 | Msa1353530:CDS | 50.0% |
| !! | CACTGACTCTTGCACTATGG+AGG | + | tig0013554:567-586 | Msa1353530:CDS | 50.0% |
| TCAGCAAACAGTGATGTCCC+CGG | - | tig0013554:616-635 | Msa1353530:intergenic | 50.0% | |
| AGCAATGAACCAAACTGCCG+AGG | + | tig0013554:1020-1039 | Msa1353530:CDS | 50.0% | |
| GCTTGTATGTGCAGGATTGC+TGG | + | tig0013554:1160-1179 | Msa1353530:intron | 50.0% | |
| TTCCATCACGCAACAGCATG+TGG | - | tig0013554:1262-1281 | Msa1353530:intergenic | 50.0% | |
| ! | CATGCTGTTGCGTGATGGAA+AGG | + | tig0013554:1262-1281 | Msa1353530:CDS | 50.0% |
| CGAGGAACAAGATTTGCGTG+AGG | + | tig0013554:1367-1386 | Msa1353530:CDS | 50.0% | |
| GGGATGTCAGACCCAATGAA+TGG | + | tig0013554:1524-1543 | Msa1353530:CDS | 50.0% | |
| GGTTCTCTGGATTCTCCAGA+CGG | + | tig0013554:1545-1564 | Msa1353530:CDS | 50.0% | |
| !!! | ATCGAAGGCGCTCCTTTTCT+TGG | - | tig0013554:1612-1631 | Msa1353530:intergenic | 50.0% |
| TGTGTGGCACAAAAACCCCA+TGG | + | tig0013554:1884-1903 | Msa1353530:CDS | 50.0% | |
| TTCGGCAATGGTTGTTGCAC+TGG | - | tig0013554:2127-2146 | Msa1353530:intergenic | 50.0% | |
| !! | TTAACTTGGGCTGGCTTTGG+TGG | - | tig0013554:2187-2206 | Msa1353530:intergenic | 50.0% |
| GAGACTCCTAACAAACCTCC+TGG | + | tig0013554:2253-2272 | Msa1353530:CDS | 50.0% | |
| ! | TAAGAAGCGTGCAGATGCAG+AGG | + | tig0013554:2438-2457 | Msa1353530:CDS | 50.0% |
| !! | TAGCGCTTGGTAGTGCTAAG+AGG | + | tig0013554:2461-2480 | Msa1353530:CDS | 50.0% |
| GACGAGTCTGTGGAATGTGG+GGG | + | tig0013554:436-455 | Msa1353530:CDS | 55.0% | |
| GAATGCCGCCGCAGTTAAGT+TGG | + | tig0013554:498-517 | Msa1353530:CDS | 55.0% | |
| TGGTTTCGGAAAGGGAAGCG+AGG | + | tig0013554:527-546 | Msa1353530:CDS | 55.0% | |
| TGCACTATGGAGGATGCTGC+TGG | + | tig0013554:577-596 | Msa1353530:CDS | 55.0% | |
| GCACTATGGAGGATGCTGCT+GGG | + | tig0013554:578-597 | Msa1353530:CDS | 55.0% | |
| CACTATGGAGGATGCTGCTG+GGG | + | tig0013554:579-598 | Msa1353530:CDS | 55.0% | |
| CAGCAAACAGTGATGTCCCC+GGG | - | tig0013554:615-634 | Msa1353530:intergenic | 55.0% | |
| AGCCACATGCTGTTGCGTGA+TGG | + | tig0013554:1257-1276 | Msa1353530:CDS | 55.0% | |
| GGAGTCCAACAATCACCGTC+TGG | - | tig0013554:1563-1582 | Msa1353530:intergenic | 55.0% | |
| CGGATGAACTTGGCACCATG+AGG | + | tig0013554:1999-2018 | Msa1353530:CDS | 55.0% | |
| ! | GGCCCACAATTAACTTGGGC+TGG | - | tig0013554:2196-2215 | Msa1353530:intergenic | 55.0% |
| AGTAAGCAGCCGTGCAAGAG+TGG | + | tig0013554:2411-2430 | Msa1353530:CDS | 55.0% | |
| GCAACAGCATGTGGCTCCCT+TGG | - | tig0013554:1253-1272 | Msa1353530:intergenic | 60.0% | |
| GCAGATGCAGAGGTAGCGCT+TGG | + | tig0013554:2448-2467 | Msa1353530:CDS | 60.0% | |
| TGATGTCCCCGGGTGACCTG+CGG | - | tig0013554:605-624 | Msa1353530:intergenic | 65.0% | |
| GAGGATGCTGCTGGGGCCGC+AGG | + | tig0013554:586-605 | Msa1353530:CDS | 75.0% | |
| TGCTGGGGCCGCAGGTCACC+CGG | + | tig0013554:594-613 | Msa1353530:CDS | 75.0% | |
| ! | GCTGGGGCCGCAGGTCACCC+GGG | + | tig0013554:595-614 | Msa1353530:CDS | 80.0% |
| ! | CTGGGGCCGCAGGTCACCCG+GGG | + | tig0013554:596-615 | Msa1353530:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013554 | gene | 1 | 2965 | 1 | ID=Msa1353530;Name=Msa1353530 |
| tig0013554 | mRNA | 1 | 2965 | 1 | ID=Msa1353530-mRNA-1;Parent=Msa1353530;Name=Msa1353530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|0.5|0.33|3|398|685 |
| tig0013554 | exon | 1 | 70 | 1 | ID=Msa1353530-mRNA-1:exon:8719;Parent=Msa1353530-mRNA-1 |
| tig0013554 | exon | 352 | 1048 | 352 | ID=Msa1353530-mRNA-1:exon:8720;Parent=Msa1353530-mRNA-1 |
| tig0013554 | exon | 1174 | 2965 | 1174 | ID=Msa1353530-mRNA-1:exon:8721;Parent=Msa1353530-mRNA-1 |
| tig0013554 | five_prime_UTR | 1 | 70 | 1 | ID=Msa1353530-mRNA-1:five_prime_utr;Parent=Msa1353530-mRNA-1 |
| tig0013554 | five_prime_UTR | 352 | 384 | 352 | ID=Msa1353530-mRNA-1:five_prime_utr;Parent=Msa1353530-mRNA-1 |
| tig0013554 | CDS | 385 | 1048 | 385 | ID=Msa1353530-mRNA-1:cds;Parent=Msa1353530-mRNA-1 |
| tig0013554 | CDS | 1174 | 2567 | 1174 | ID=Msa1353530-mRNA-1:cds;Parent=Msa1353530-mRNA-1 |
| tig0013554 | three_prime_UTR | 2568 | 2965 | 2568 | ID=Msa1353530-mRNA-1:three_prime_utr;Parent=Msa1353530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
