Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992030 | XP_013442804.1 | 95.810 | 358 | 10 | 4 | 1 | 356 | 1 | 355 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992030 | sp|Q0WUQ1|BAG1_ARATH | 54.192 | 334 | 111 | 7 | 35 | 356 | 39 | 342 | 3.43e-112 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992030 | A0A072TGZ0 | 95.810 | 358 | 10 | 4 | 1 | 356 | 1 | 355 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0992030 | 0.813457 | 2.535339e-51 | -8.615850e-47 |
| Msa0018240 | Msa0992030 | 0.827196 | 1.787730e-54 | -8.615850e-47 |
| Msa0032920 | Msa0992030 | -0.819382 | 1.195938e-52 | -8.615850e-47 |
| Msa0039570 | Msa0992030 | 0.806950 | 6.412635e-50 | -8.615850e-47 |
| Msa0050160 | Msa0992030 | 0.824244 | 8.965204e-54 | -8.615850e-47 |
| Msa0060760 | Msa0992030 | 0.811891 | 5.579205e-51 | -8.615850e-47 |
| Msa0081520 | Msa0992030 | 0.821070 | 4.909601e-53 | -8.615850e-47 |
| Msa0093850 | Msa0992030 | 0.802545 | 5.332669e-49 | -8.615850e-47 |
| Msa0097080 | Msa0992030 | 0.817909 | 2.582091e-52 | -8.615850e-47 |
| Msa0116790 | Msa0992030 | 0.824501 | 7.800782e-54 | -8.615850e-47 |
| Msa0622810 | Msa0992030 | 0.803089 | 4.117092e-49 | -8.615850e-47 |
| Msa0626450 | Msa0992030 | 0.866778 | 2.222291e-65 | -8.615850e-47 |
| Msa0626490 | Msa0992030 | 0.869843 | 2.285340e-66 | -8.615850e-47 |
| Msa0638480 | Msa0992030 | 0.804435 | 2.163152e-49 | -8.615850e-47 |
| Msa0651550 | Msa0992030 | 0.805961 | 1.036538e-49 | -8.615850e-47 |
| Msa0664600 | Msa0992030 | 0.868642 | 5.608540e-66 | -8.615850e-47 |
| Msa0685490 | Msa0992030 | 0.811631 | 6.355194e-51 | -8.615850e-47 |
| Msa0702340 | Msa0992030 | 0.806215 | 9.166257e-50 | -8.615850e-47 |
| Msa0702590 | Msa0992030 | 0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa0702660 | Msa0992030 | 0.801573 | 8.449962e-49 | -8.615850e-47 |
| Msa0711430 | Msa0992030 | 0.814997 | 1.158271e-51 | -8.615850e-47 |
| Msa0713970 | Msa0992030 | 0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa0832120 | Msa0992030 | 0.805997 | 1.018639e-49 | -8.615850e-47 |
| Msa0835370 | Msa0992030 | 0.829593 | 4.719951e-55 | -8.615850e-47 |
| Msa0134000 | Msa0992030 | 0.824661 | 7.152745e-54 | -8.615850e-47 |
| Msa0138360 | Msa0992030 | 0.829500 | 4.972744e-55 | -8.615850e-47 |
| Msa0147980 | Msa0992030 | 0.823930 | 1.062129e-53 | -8.615850e-47 |
| Msa0154440 | Msa0992030 | 0.807255 | 5.526300e-50 | -8.615850e-47 |
| Msa0166460 | Msa0992030 | 0.837010 | 6.688797e-57 | -8.615850e-47 |
| Msa0173890 | Msa0992030 | 0.819745 | 9.884759e-53 | -8.615850e-47 |
| Msa0181000 | Msa0992030 | 0.838153 | 3.404588e-57 | -8.615850e-47 |
| Msa0181230 | Msa0992030 | 0.807128 | 5.878935e-50 | -8.615850e-47 |
| Msa0186630 | Msa0992030 | 0.818585 | 1.815064e-52 | -8.615850e-47 |
| Msa0195630 | Msa0992030 | 0.803868 | 2.839204e-49 | -8.615850e-47 |
| Msa0376630 | Msa0992030 | 0.801182 | 1.015751e-48 | -8.615850e-47 |
| Msa0378720 | Msa0992030 | 0.803906 | 2.787790e-49 | -8.615850e-47 |
| Msa0392380 | Msa0992030 | 0.804989 | 1.657872e-49 | -8.615850e-47 |
| Msa0430260 | Msa0992030 | 0.803434 | 3.492582e-49 | -8.615850e-47 |
| Msa0992030 | Msa0993740 | 0.857865 | 1.219507e-62 | -8.615850e-47 |
| Msa0992030 | Msa0993760 | 0.988427 | 5.639574e-174 | -8.615850e-47 |
| Msa0992030 | Msa1085330 | 0.821127 | 4.763481e-53 | -8.615850e-47 |
| Msa0992030 | Msa1209420 | 0.802426 | 5.643057e-49 | -8.615850e-47 |
| Msa0992030 | Msa1218920 | 0.810492 | 1.122098e-50 | -8.615850e-47 |
| Msa0992030 | Msa1224840 | 0.802901 | 4.501757e-49 | -8.615850e-47 |
| Msa0992030 | Msa1332840 | 0.801311 | 9.561514e-49 | -8.615850e-47 |
| Msa0992030 | Msa1348090 | 0.844319 | 8.140223e-59 | -8.615850e-47 |
| Msa0992030 | Msa1356830 | 0.818172 | 2.251710e-52 | -8.615850e-47 |
| Msa0992030 | Msa1369150 | 0.803165 | 3.971532e-49 | -8.615850e-47 |
| Msa0992030 | Msa1371520 | 0.833441 | 5.325036e-56 | -8.615850e-47 |
| Msa0992030 | Msa1422580 | 0.804435 | 2.162960e-49 | -8.615850e-47 |
| Msa0992030 | Msa1437940 | 0.816194 | 6.270668e-52 | -8.615850e-47 |
| Msa0992030 | Msa1440960 | 0.863262 | 2.822268e-64 | -8.615850e-47 |
| Msa0992030 | Msa1459460 | 0.802405 | 5.698451e-49 | -8.615850e-47 |
| Msa0249540 | Msa0992030 | 0.805728 | 1.160625e-49 | -8.615850e-47 |
| Msa0315980 | Msa0992030 | 0.811512 | 6.745621e-51 | -8.615850e-47 |
| Msa0341690 | Msa0992030 | 0.803302 | 3.719988e-49 | -8.615850e-47 |
| Msa0343770 | Msa0992030 | 0.820668 | 6.072313e-53 | -8.615850e-47 |
| Msa0487500 | Msa0992030 | 0.811528 | 6.691596e-51 | -8.615850e-47 |
| Msa0519760 | Msa0992030 | 0.800502 | 1.398564e-48 | -8.615850e-47 |
| Msa0519840 | Msa0992030 | 0.805129 | 1.549212e-49 | -8.615850e-47 |
| Msa0527190 | Msa0992030 | 0.833486 | 5.188142e-56 | -8.615850e-47 |
| Msa0573380 | Msa0992030 | 0.803438 | 3.486558e-49 | -8.615850e-47 |
| Msa0929090 | Msa0992030 | 0.940894 | 1.067207e-100 | -8.615850e-47 |
| Msa0945490 | Msa0992030 | 0.806798 | 6.905041e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992030 | MtrunA17_Chr6g0473621 | 95.810 | 358 | 10 | 4 | 1 | 356 | 1 | 355 | 0.0 | 691 |
| Msa0992030 | MtrunA17_Chr1g0203771 | 63.158 | 361 | 100 | 7 | 1 | 356 | 1 | 333 | 8.01e-143 | 407 |
| Msa0992030 | MtrunA17_Chr4g0057261 | 47.541 | 305 | 110 | 5 | 23 | 321 | 20 | 280 | 1.61e-79 | 244 |
| Msa0992030 | MtrunA17_Chr2g0285591 | 46.053 | 228 | 118 | 2 | 10 | 237 | 7 | 229 | 7.24e-65 | 206 |
| Msa0992030 | MtrunA17_Chr7g0243051 | 45.000 | 220 | 118 | 2 | 19 | 237 | 3 | 220 | 1.88e-55 | 181 |
| Msa0992030 | MtrunA17_Chr4g0007601 | 49.462 | 186 | 91 | 1 | 60 | 242 | 27 | 212 | 2.18e-51 | 171 |
| Msa0992030 | MtrunA17_Chr6g0458271 | 41.727 | 139 | 75 | 4 | 18 | 156 | 23 | 155 | 6.21e-27 | 104 |
| Msa0992030 | MtrunA17_Chr6g0458281 | 39.516 | 124 | 70 | 1 | 34 | 157 | 35 | 153 | 7.24e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992030 | AT5G52060.1 | 54.192 | 334 | 111 | 7 | 35 | 356 | 39 | 342 | 3.48e-113 | 333 |
| Msa0992030 | AT5G07220.1 | 51.312 | 343 | 118 | 8 | 17 | 356 | 7 | 303 | 3.12e-104 | 309 |
| Msa0992030 | AT5G62100.2 | 48.182 | 330 | 108 | 6 | 32 | 355 | 12 | 284 | 1.99e-96 | 288 |
| Msa0992030 | AT5G62100.1 | 46.921 | 341 | 107 | 8 | 32 | 355 | 12 | 295 | 6.64e-93 | 280 |
| Msa0992030 | AT5G62100.5 | 63.830 | 188 | 65 | 1 | 32 | 219 | 12 | 196 | 1.84e-81 | 247 |
| Msa0992030 | AT5G62100.4 | 62.963 | 189 | 67 | 1 | 31 | 219 | 11 | 196 | 7.22e-81 | 246 |
| Msa0992030 | AT5G62100.3 | 64.286 | 140 | 47 | 1 | 32 | 171 | 12 | 148 | 3.17e-59 | 188 |
| Msa0992030 | AT5G62100.6 | 64.286 | 140 | 47 | 1 | 32 | 171 | 12 | 148 | 3.17e-59 | 188 |
| Msa0992030 | AT3G51780.1 | 43.119 | 218 | 105 | 5 | 35 | 237 | 10 | 223 | 2.07e-45 | 157 |
| Msa0992030 | AT5G14360.1 | 41.818 | 110 | 59 | 1 | 34 | 143 | 47 | 151 | 7.90e-22 | 91.3 |
| Msa0992030 | AT5G40630.1 | 36.937 | 111 | 67 | 2 | 33 | 143 | 54 | 161 | 1.73e-20 | 87.8 |
Find 100 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCAAGAGAAAAGGATTT+TGG | 0.200313 | 6_4:+58805085 | Msa0992030:CDS |
| GATGAATCAATTGCTTAAAT+TGG | 0.225045 | 6_4:+58805694 | Msa0992030:CDS |
| TCATGTAAATGACATATTAT+AGG | 0.232891 | 6_4:-58806646 | None:intergenic |
| CATGTAAATGACATATTATA+GGG | 0.256093 | 6_4:-58806645 | None:intergenic |
| GAGTTGTTGTTACTACAAAA+TGG | 0.278243 | 6_4:+58806391 | Msa0992030:CDS |
| CTGCAACCACCTGAGCTTAT+AGG | 0.279994 | 6_4:-58804337 | None:intergenic |
| CTTAGGAGGACCTGAATTAT+TGG | 0.280440 | 6_4:-58806487 | None:intergenic |
| TGGTTCCTACAATTAGAGTT+AGG | 0.283648 | 6_4:+58804449 | Msa0992030:CDS |
| GAATTCATTTACCAAATGTT+TGG | 0.308274 | 6_4:+58806742 | Msa0992030:three_prime_UTR |
| ATCCCATTCTTGATCGATTT+CGG | 0.309671 | 6_4:-58806839 | None:intergenic |
| TTGATCGATTTCGGTTGGTT+GGG | 0.331578 | 6_4:-58806830 | None:intergenic |
| AGGTGGTTGCAGAGCTGAAC+CGG | 0.333790 | 6_4:+58804348 | Msa0992030:CDS |
| TCTTCTTGTTGTTCTTGAAT+TGG | 0.338014 | 6_4:-58806303 | None:intergenic |
| ATTCATTCAAATGGTTATCA+TGG | 0.341230 | 6_4:+58806270 | Msa0992030:CDS |
| GCTAAGAATTCTATACAAAA+TGG | 0.347968 | 6_4:+58806162 | Msa0992030:CDS |
| AAACATTTGGTAAATGAATT+CGG | 0.349014 | 6_4:-58806740 | None:intergenic |
| CTTGATCGATTTCGGTTGGT+TGG | 0.369939 | 6_4:-58806831 | None:intergenic |
| GAACTTGTGTGGATATGATT+TGG | 0.371580 | 6_4:+58806556 | Msa0992030:three_prime_UTR |
| AATTCATTTACCAAATGTTT+GGG | 0.374969 | 6_4:+58806743 | Msa0992030:three_prime_UTR |
| AGACAAAGAGAGGGATTCTA+AGG | 0.387250 | 6_4:+58805001 | Msa0992030:CDS |
| CCTTCAATGACCAATAATTC+AGG | 0.387889 | 6_4:+58806477 | Msa0992030:CDS |
| GTAGATGGAAATGTGATTAA+TGG | 0.398757 | 6_4:-58806435 | None:intergenic |
| ATTAGAGTTAGGGTCAAGTT+TGG | 0.404587 | 6_4:+58804460 | Msa0992030:CDS |
| TTCAAATCGTAACCCTGCTT+TGG | 0.405274 | 6_4:+58804429 | Msa0992030:CDS |
| ATTAGTTCACAAGCCACATT+TGG | 0.410487 | 6_4:+58804505 | Msa0992030:CDS |
| AGATTAGCTTGGAAGTAGAT+AGG | 0.410787 | 6_4:+58805156 | Msa0992030:CDS |
| CCTCAACAAAAGCATTCAAA+TGG | 0.422309 | 6_4:+58806210 | Msa0992030:CDS |
| GGTTCCTACAATTAGAGTTA+GGG | 0.435115 | 6_4:+58804450 | Msa0992030:CDS |
| CTAATTGTAGGAACCAAAGC+AGG | 0.435383 | 6_4:-58804442 | None:intergenic |
| TTGACCCTAACTCTAATTGT+AGG | 0.437016 | 6_4:-58804454 | None:intergenic |
| TTGGAAGTAGATAGGCTTGC+CGG | 0.437951 | 6_4:+58805164 | Msa0992030:CDS |
| AAAATGTTGTCAGGACCAAC+TGG | 0.440623 | 6_4:+58804945 | Msa0992030:CDS |
| CCACAACAAATTCATTCAAA+TGG | 0.444236 | 6_4:+58806261 | Msa0992030:CDS |
| CCTGAATTATTGGTCATTGA+AGG | 0.451892 | 6_4:-58806477 | None:intergenic |
| CATGGTAATAATAAGACAAA+TGG | 0.457366 | 6_4:+58804304 | Msa0992030:CDS |
| CAGAGCTGAACCGGGTTCAA+TGG | 0.458677 | 6_4:+58804357 | Msa0992030:CDS |
| CAACCGAAATCGATCAAGAA+TGG | 0.459535 | 6_4:+58806836 | Msa0992030:three_prime_UTR |
| AAGAATTCCCAACTGAACTT+AGG | 0.466020 | 6_4:-58806504 | None:intergenic |
| AGTAGATAGGCTTGCCGGAC+GGG | 0.466043 | 6_4:+58805169 | Msa0992030:CDS |
| AGTTGTTGTTACTACAAAAT+GGG | 0.466295 | 6_4:+58806392 | Msa0992030:CDS |
| TGATCGATTTCGGTTGGTTG+GGG | 0.469402 | 6_4:-58806829 | None:intergenic |
| AGAATGGGATGGTGAGTTGT+TGG | 0.472145 | 6_4:+58806852 | Msa0992030:three_prime_UTR |
| GAAAGAAGATGTTGAGGATG+AGG | 0.474398 | 6_4:+58804269 | Msa0992030:exon |
| TCTTGATGTAGTTGGTGTAA+AGG | 0.476551 | 6_4:+58805028 | Msa0992030:CDS |
| CATTCTTGATCGATTTCGGT+TGG | 0.477126 | 6_4:-58806835 | None:intergenic |
| CTGAACCGGGTTCAATGGAA+TGG | 0.478419 | 6_4:+58804362 | Msa0992030:CDS |
| AATCAATTGCTTAAATTGGA+TGG | 0.481120 | 6_4:+58805698 | Msa0992030:CDS |
| ATCCTATTAGTCAAGAGAAA+AGG | 0.488781 | 6_4:+58805078 | Msa0992030:CDS |
| ATCTATCTCACAGATTAGCT+TGG | 0.490471 | 6_4:+58805145 | Msa0992030:CDS |
| TCAAAAGTATGTTGAAACAT+TGG | 0.493311 | 6_4:+58806128 | Msa0992030:CDS |
| GTTTCTTCACCTATAAGCTC+AGG | 0.498812 | 6_4:+58804328 | Msa0992030:CDS |
| CAGGTCCTCCTAAGTTCAGT+TGG | 0.500744 | 6_4:+58806496 | Msa0992030:CDS |
| GATTTGAAGAAAATGTTGTC+AGG | 0.501668 | 6_4:+58804936 | Msa0992030:CDS |
| ATTGAGGAAGAATGCTAAGA+TGG | 0.502442 | 6_4:+58805109 | Msa0992030:CDS |
| AACCGAAATCGATCAAGAAT+GGG | 0.508928 | 6_4:+58806837 | Msa0992030:three_prime_UTR |
| TTCATTCAAATGGTTATCAT+GGG | 0.511689 | 6_4:+58806271 | Msa0992030:CDS |
| ATTTGGATTTGTATTCCACT+TGG | 0.516673 | 6_4:+58806573 | Msa0992030:three_prime_UTR |
| ATGGAATGGGAGATGAGGCC+AGG | 0.517312 | 6_4:+58804376 | Msa0992030:CDS |
| GTGAAAAGATTTACCAAATG+TGG | 0.519912 | 6_4:-58804518 | None:intergenic |
| GAATCAATAATTAGCAAAGG+TGG | 0.522143 | 6_4:+58805629 | Msa0992030:CDS |
| ATGAGGAATAATCATAATCA+TGG | 0.527299 | 6_4:+58804286 | Msa0992030:CDS |
| CTCAACAAAAGCATTCAAAT+GGG | 0.530855 | 6_4:+58806211 | Msa0992030:CDS |
| GCATTCAAATGGGAAACGAT+TGG | 0.532681 | 6_4:+58806221 | Msa0992030:CDS |
| AGGTCCTCCTAAGTTCAGTT+GGG | 0.534106 | 6_4:+58806497 | Msa0992030:CDS |
| AATCAATAATTAGCAAAGGT+GGG | 0.534823 | 6_4:+58805630 | Msa0992030:CDS |
| GATGGAAATGTGATTAATGG+TGG | 0.538741 | 6_4:-58806432 | None:intergenic |
| TGAACCGGGTTCAATGGAAT+GGG | 0.545913 | 6_4:+58804363 | Msa0992030:CDS |
| CAAATCTAAACTAGTTCTTG+TGG | 0.548510 | 6_4:+58805052 | Msa0992030:CDS |
| TTTGAATCAATAATTAGCAA+AGG | 0.549282 | 6_4:+58805626 | Msa0992030:CDS |
| TCACAACTATGCAACAAAAG+TGG | 0.555123 | 6_4:-58804242 | None:intergenic |
| TCTTCACCTATAAGCTCAGG+TGG | 0.558010 | 6_4:+58804331 | Msa0992030:CDS |
| GAACAACAACACCAACCCTC+AGG | 0.567003 | 6_4:+58806369 | Msa0992030:CDS |
| ATCTCCCATTCCATTGAACC+CGG | 0.567397 | 6_4:-58804367 | None:intergenic |
| AATTCCCAACTGAACTTAGG+AGG | 0.568401 | 6_4:-58806501 | None:intergenic |
| ATGGAAATGTGATTAATGGT+GGG | 0.575408 | 6_4:-58806431 | None:intergenic |
| GTTGTAGAATCAGATGTGCT+TGG | 0.578246 | 6_4:+58805656 | Msa0992030:CDS |
| GATGAGGCCAGGTGGAATGT+TGG | 0.583094 | 6_4:+58804387 | Msa0992030:CDS |
| GTTTGAACCAACATTCCACC+TGG | 0.585611 | 6_4:-58804394 | None:intergenic |
| AAAACATATAACACTCCAAG+TGG | 0.590061 | 6_4:-58806588 | None:intergenic |
| TTGGATGGTATAATTACTGA+TGG | 0.591576 | 6_4:+58805713 | Msa0992030:CDS |
| GTTGTGGATGTAGATGTAGA+TGG | 0.595278 | 6_4:-58806450 | None:intergenic |
| ATGTAAATGACATATTATAG+GGG | 0.596777 | 6_4:-58806644 | None:intergenic |
| CCATTTGAATGAATTTGTTG+TGG | 0.596817 | 6_4:-58806261 | None:intergenic |
| GTAGTAACAACAACTCCTGA+GGG | 0.597798 | 6_4:-58806384 | None:intergenic |
| GCCACATGTTTGAACTTGTG+TGG | 0.602693 | 6_4:+58806545 | Msa0992030:three_prime_UTR |
| GGTGGTTGCAGAGCTGAACC+GGG | 0.606693 | 6_4:+58804349 | Msa0992030:CDS |
| TGTAGTAACAACAACTCCTG+AGG | 0.608014 | 6_4:-58806385 | None:intergenic |
| AGGGTTACGATTTGAATCAG+TGG | 0.610632 | 6_4:-58804422 | None:intergenic |
| AAGTAGATAGGCTTGCCGGA+CGG | 0.614233 | 6_4:+58805168 | Msa0992030:CDS |
| TCCACACAAGTTCAAACATG+TGG | 0.629908 | 6_4:-58806546 | None:intergenic |
| GTTCAATGGAATGGGAGATG+AGG | 0.632010 | 6_4:+58804371 | Msa0992030:CDS |
| GGTCATTGAAGGAGTAGTTG+TGG | 0.633027 | 6_4:-58806466 | None:intergenic |
| TAACAACAACTCCTGAGGGT+TGG | 0.635228 | 6_4:-58806380 | None:intergenic |
| ACAAGTTCAAACATGTGGCA+TGG | 0.644336 | 6_4:-58806541 | None:intergenic |
| GAAAGTGAAAGAAGATGTTG+AGG | 0.648534 | 6_4:+58804263 | Msa0992030:exon |
| TCTTGATGATGTAAACCAGT+TGG | 0.653777 | 6_4:-58804960 | None:intergenic |
| GAAATCGATCAAGAATGGGA+TGG | 0.659934 | 6_4:+58806841 | Msa0992030:three_prime_UTR |
| GAATGGGAGATGAGGCCAGG+TGG | 0.662952 | 6_4:+58804379 | Msa0992030:CDS |
| TGGAAATGTGATTAATGGTG+GGG | 0.663979 | 6_4:-58806430 | None:intergenic |
| TAATTGTAGGAACCAAAGCA+GGG | 0.677158 | 6_4:-58804441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATGAATAAATTAAAT+TGG | + | chr6_4:58805455-58805474 | Msa0992030:intron | 10.0% |
| !! | AAAATATCAAAATAAAAACA+AGG | - | chr6_4:58805793-58805812 | None:intergenic | 10.0% |
| !! | TTTATATATCTATCAAAAAT+AGG | - | chr6_4:58806769-58806788 | None:intergenic | 10.0% |
| !!! | TATTTTTTAAAGTTGTGATT+TGG | + | chr6_4:58804890-58804909 | Msa0992030:intron | 15.0% |
| !!! | TATTTTTATATTTTTCCATG+CGG | + | chr6_4:58805881-58805900 | Msa0992030:intron | 15.0% |
| !!! | AACAAAATAAACAGTTATTT+TGG | - | chr6_4:58806031-58806050 | None:intergenic | 15.0% |
| !!! | TTACTTGTTCATTAATTTTA+TGG | + | chr6_4:58806068-58806087 | Msa0992030:intron | 15.0% |
| !!! | TACTTGTTCATTAATTTTAT+GGG | + | chr6_4:58806069-58806088 | Msa0992030:intron | 15.0% |
| !! | TCATTTACATGAAAAATAAA+TGG | + | chr6_4:58806657-58806676 | Msa0992030:three_prime_UTR | 15.0% |
| !! | CATTTACATGAAAAATAAAT+GGG | + | chr6_4:58806658-58806677 | Msa0992030:three_prime_UTR | 15.0% |
| !! | ATTTACATGAAAAATAAATG+GGG | + | chr6_4:58806659-58806678 | Msa0992030:three_prime_UTR | 15.0% |
| !!! | TTACTTTTATGTGATTATTA+TGG | + | chr6_4:58806711-58806730 | Msa0992030:three_prime_UTR | 15.0% |
| !! | GAAAAAAAACAAAAGATTTG+AGG | - | chr6_4:58803993-58804012 | None:intergenic | 20.0% |
| !! | ATCTAATTATTTGTCCATTA+GGG | - | chr6_4:58805364-58805383 | None:intergenic | 20.0% |
| !! | TATCTAATTATTTGTCCATT+AGG | - | chr6_4:58805365-58805384 | None:intergenic | 20.0% |
| !!! | TAATGGACAAATAATTAGAT+AGG | + | chr6_4:58805364-58805383 | Msa0992030:intron | 20.0% |
| !! | TTTGAATCAATAATTAGCAA+AGG | + | chr6_4:58805626-58805645 | Msa0992030:CDS | 20.0% |
| !! | ATGTAAATGACATATTATAG+GGG | - | chr6_4:58806647-58806666 | None:intergenic | 20.0% |
| !! | CATGTAAATGACATATTATA+GGG | - | chr6_4:58806648-58806667 | None:intergenic | 20.0% |
| !! | TCATGTAAATGACATATTAT+AGG | - | chr6_4:58806649-58806668 | None:intergenic | 20.0% |
| !! | AAACATTTGGTAAATGAATT+CGG | - | chr6_4:58806743-58806762 | None:intergenic | 20.0% |
| !! | AATTCATTTACCAAATGTTT+GGG | + | chr6_4:58806743-58806762 | Msa0992030:three_prime_UTR | 20.0% |
| ! | ATGAGGAATAATCATAATCA+TGG | + | chr6_4:58804286-58804305 | Msa0992030:CDS | 25.0% |
| ! | CATGGTAATAATAAGACAAA+TGG | + | chr6_4:58804304-58804323 | Msa0992030:CDS | 25.0% |
| ! | TCAAAAGAAGAGAAATTACT+TGG | - | chr6_4:58804837-58804856 | None:intergenic | 25.0% |
| ! | ACTTTATGAGTCATACAATT+TGG | + | chr6_4:58805324-58805343 | Msa0992030:intron | 25.0% |
| ! | TTCAAACAATTATATGAGTG+AGG | + | chr6_4:58805526-58805545 | Msa0992030:intron | 25.0% |
| ! | ATTGAGTACTAATTAGTTAC+TGG | + | chr6_4:58805584-58805603 | Msa0992030:intron | 25.0% |
| ! | ATTAGTTACTGGAATTGATT+AGG | + | chr6_4:58805595-58805614 | Msa0992030:intron | 25.0% |
| ! | AATCAATAATTAGCAAAGGT+GGG | + | chr6_4:58805630-58805649 | Msa0992030:CDS | 25.0% |
| ! | GATGAATCAATTGCTTAAAT+TGG | + | chr6_4:58805694-58805713 | Msa0992030:CDS | 25.0% |
| ! | AATCAATTGCTTAAATTGGA+TGG | + | chr6_4:58805698-58805717 | Msa0992030:CDS | 25.0% |
| !!! | TCCAATTTGAAACATTTTGA+AGG | + | chr6_4:58806095-58806114 | Msa0992030:intron | 25.0% |
| ! | ACCTTCAAAATGTTTCAAAT+TGG | - | chr6_4:58806099-58806118 | None:intergenic | 25.0% |
| !!! | TTTGAAACATTTTGAAGGTA+AGG | + | chr6_4:58806100-58806119 | Msa0992030:intron | 25.0% |
| !! | TCAAAAGTATGTTGAAACAT+TGG | + | chr6_4:58806128-58806147 | Msa0992030:CDS | 25.0% |
| ! | GCTAAGAATTCTATACAAAA+TGG | + | chr6_4:58806162-58806181 | Msa0992030:CDS | 25.0% |
| ! | ATTCATTCAAATGGTTATCA+TGG | + | chr6_4:58806270-58806289 | Msa0992030:CDS | 25.0% |
| ! | TTCATTCAAATGGTTATCAT+GGG | + | chr6_4:58806271-58806290 | Msa0992030:CDS | 25.0% |
| !! | AGTTGTTGTTACTACAAAAT+GGG | + | chr6_4:58806392-58806411 | Msa0992030:CDS | 25.0% |
| ! | GAATTCATTTACCAAATGTT+TGG | + | chr6_4:58806742-58806761 | Msa0992030:three_prime_UTR | 25.0% |
| GTGAAAAGATTTACCAAATG+TGG | - | chr6_4:58804521-58804540 | None:intergenic | 30.0% | |
| TGTCAAATTATTAGCTGTGT+CGG | + | chr6_4:58804631-58804650 | Msa0992030:intron | 30.0% | |
| TCAAAAATCGTAATGAAGCA+TGG | - | chr6_4:58804680-58804699 | None:intergenic | 30.0% | |
| TCGAGTTTAAATCTTAACTC+AGG | - | chr6_4:58804755-58804774 | None:intergenic | 30.0% | |
| GATTTGAAGAAAATGTTGTC+AGG | + | chr6_4:58804936-58804955 | Msa0992030:CDS | 30.0% | |
| ! | TGTTTTACAAAGACAAAGAG+AGG | + | chr6_4:58804991-58805010 | Msa0992030:CDS | 30.0% |
| ! | GTTTTACAAAGACAAAGAGA+GGG | + | chr6_4:58804992-58805011 | Msa0992030:CDS | 30.0% |
| ! | CAAATCTAAACTAGTTCTTG+TGG | + | chr6_4:58805052-58805071 | Msa0992030:CDS | 30.0% |
| ATCCTATTAGTCAAGAGAAA+AGG | + | chr6_4:58805078-58805097 | Msa0992030:CDS | 30.0% | |
| ! | ATCCTTTTCTCTTGACTAAT+AGG | - | chr6_4:58805083-58805102 | None:intergenic | 30.0% |
| ! | TAGTCAAGAGAAAAGGATTT+TGG | + | chr6_4:58805085-58805104 | Msa0992030:CDS | 30.0% |
| !!! | AGAAAAGGATTTTGGAATTG+AGG | + | chr6_4:58805093-58805112 | Msa0992030:CDS | 30.0% |
| !!! | AATTGGTGATTGACTTGTTT+TGG | + | chr6_4:58805472-58805491 | Msa0992030:intron | 30.0% |
| AACAATTATATGAGTGAGGT+TGG | + | chr6_4:58805530-58805549 | Msa0992030:intron | 30.0% | |
| GAATCAATAATTAGCAAAGG+TGG | + | chr6_4:58805629-58805648 | Msa0992030:CDS | 30.0% | |
| TTGGATGGTATAATTACTGA+TGG | + | chr6_4:58805713-58805732 | Msa0992030:CDS | 30.0% | |
| CAAATTGCAAAGAAAAATGC+AGG | + | chr6_4:58805742-58805761 | Msa0992030:CDS | 30.0% | |
| TCATTGACCAATTTGACTAA+CGG | - | chr6_4:58805923-58805942 | None:intergenic | 30.0% | |
| AAATATGAGGTAATACCACT+TGG | - | chr6_4:58806003-58806022 | None:intergenic | 30.0% | |
| !!! | TATTTTGGTCGCTAAATATG+AGG | - | chr6_4:58806016-58806035 | None:intergenic | 30.0% |
| !! | CTCAACAAAAGCATTCAAAT+GGG | + | chr6_4:58806211-58806230 | Msa0992030:CDS | 30.0% |
| !! | CCATTTGAATGAATTTGTTG+TGG | - | chr6_4:58806264-58806283 | None:intergenic | 30.0% |
| CCACAACAAATTCATTCAAA+TGG | + | chr6_4:58806261-58806280 | Msa0992030:CDS | 30.0% | |
| !! | TCTTCTTGTTGTTCTTGAAT+TGG | - | chr6_4:58806306-58806325 | None:intergenic | 30.0% |
| !!! | AGCTCATTTGAGTTTTTTCT+AGG | - | chr6_4:58806333-58806352 | None:intergenic | 30.0% |
| ! | GAGTTGTTGTTACTACAAAA+TGG | + | chr6_4:58806391-58806410 | Msa0992030:CDS | 30.0% |
| ATGGAAATGTGATTAATGGT+GGG | - | chr6_4:58806434-58806453 | None:intergenic | 30.0% | |
| GTAGATGGAAATGTGATTAA+TGG | - | chr6_4:58806438-58806457 | None:intergenic | 30.0% | |
| ATTTGGATTTGTATTCCACT+TGG | + | chr6_4:58806573-58806592 | Msa0992030:three_prime_UTR | 30.0% | |
| AAAACATATAACACTCCAAG+TGG | - | chr6_4:58806591-58806610 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCTCGTAATTG+TGG | + | chr6_4:58804008-58804027 | Msa0992030:intron | 35.0% |
| TCACAACTATGCAACAAAAG+TGG | - | chr6_4:58804245-58804264 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAGATGTTG+AGG | + | chr6_4:58804263-58804282 | Msa0992030:exon | 35.0% | |
| TAATTGTAGGAACCAAAGCA+GGG | - | chr6_4:58804444-58804463 | None:intergenic | 35.0% | |
| TGGTTCCTACAATTAGAGTT+AGG | + | chr6_4:58804449-58804468 | Msa0992030:CDS | 35.0% | |
| GGTTCCTACAATTAGAGTTA+GGG | + | chr6_4:58804450-58804469 | Msa0992030:CDS | 35.0% | |
| TTGACCCTAACTCTAATTGT+AGG | - | chr6_4:58804457-58804476 | None:intergenic | 35.0% | |
| ATTAGAGTTAGGGTCAAGTT+TGG | + | chr6_4:58804460-58804479 | Msa0992030:CDS | 35.0% | |
| ATTAGTTCACAAGCCACATT+TGG | + | chr6_4:58804505-58804524 | Msa0992030:CDS | 35.0% | |
| TAATCTTCCGCTATAAAGCA+CGG | + | chr6_4:58804570-58804589 | Msa0992030:intron | 35.0% | |
| ATCGTAATGAAGCATGGATA+CGG | - | chr6_4:58804674-58804693 | None:intergenic | 35.0% | |
| GACTCATGTAATTCGAAGTT+CGG | + | chr6_4:58804706-58804725 | Msa0992030:intron | 35.0% | |
| !! | AAGTTGTGATTTGGTGACAT+TGG | + | chr6_4:58804899-58804918 | Msa0992030:intron | 35.0% |
| !! | TCTTGATGATGTAAACCAGT+TGG | - | chr6_4:58804963-58804982 | None:intergenic | 35.0% |
| ! | AAGGCTTTTCTTGATGTAGT+TGG | + | chr6_4:58805020-58805039 | Msa0992030:CDS | 35.0% |
| ! | TCTTGATGTAGTTGGTGTAA+AGG | + | chr6_4:58805028-58805047 | Msa0992030:CDS | 35.0% |
| ATTGAGGAAGAATGCTAAGA+TGG | + | chr6_4:58805109-58805128 | Msa0992030:CDS | 35.0% | |
| ! | ATCTATCTCACAGATTAGCT+TGG | + | chr6_4:58805145-58805164 | Msa0992030:CDS | 35.0% |
| !! | AGATTAGCTTGGAAGTAGAT+AGG | + | chr6_4:58805156-58805175 | Msa0992030:CDS | 35.0% |
| TCTATTGCATTACTCCCTAA+TGG | + | chr6_4:58805347-58805366 | Msa0992030:intron | 35.0% | |
| GTGTATTCCGTTAGTCAAAT+TGG | + | chr6_4:58805913-58805932 | Msa0992030:intron | 35.0% | |
| CACTTGGTCTCTAAATATGT+CGG | - | chr6_4:58805987-58806006 | None:intergenic | 35.0% | |
| ! | CCATTTGAATGCTTTTGTTG+AGG | - | chr6_4:58806213-58806232 | None:intergenic | 35.0% |
| !! | CCTCAACAAAAGCATTCAAA+TGG | + | chr6_4:58806210-58806229 | Msa0992030:CDS | 35.0% |
| !! | TGAGCTTTCACTTGTTTTTC+AGG | + | chr6_4:58806347-58806366 | Msa0992030:CDS | 35.0% |
| TGGAAATGTGATTAATGGTG+GGG | - | chr6_4:58806433-58806452 | None:intergenic | 35.0% | |
| GATGGAAATGTGATTAATGG+TGG | - | chr6_4:58806435-58806454 | None:intergenic | 35.0% | |
| CCTGAATTATTGGTCATTGA+AGG | - | chr6_4:58806480-58806499 | None:intergenic | 35.0% | |
| CCTTCAATGACCAATAATTC+AGG | + | chr6_4:58806477-58806496 | Msa0992030:CDS | 35.0% | |
| AAGAATTCCCAACTGAACTT+AGG | - | chr6_4:58806507-58806526 | None:intergenic | 35.0% | |
| GAACTTGTGTGGATATGATT+TGG | + | chr6_4:58806556-58806575 | Msa0992030:three_prime_UTR | 35.0% | |
| CAAAAATAGGCCCAAACATT+TGG | - | chr6_4:58806756-58806775 | None:intergenic | 35.0% | |
| AACCGAAATCGATCAAGAAT+GGG | + | chr6_4:58806837-58806856 | Msa0992030:three_prime_UTR | 35.0% | |
| ! | ATCCCATTCTTGATCGATTT+CGG | - | chr6_4:58806842-58806861 | None:intergenic | 35.0% |
| ! | AACATGTTCTAGCAGCCTTT+TGG | + | chr6_4:58804063-58804082 | Msa0992030:intron | 40.0% |
| ! | TAGCAGCCTTTTGGTGAATT+GGG | + | chr6_4:58804072-58804091 | Msa0992030:intron | 40.0% |
| GAAAGAAGATGTTGAGGATG+AGG | + | chr6_4:58804269-58804288 | Msa0992030:exon | 40.0% | |
| GTTTCTTCACCTATAAGCTC+AGG | + | chr6_4:58804328-58804347 | Msa0992030:CDS | 40.0% | |
| AGGGTTACGATTTGAATCAG+TGG | - | chr6_4:58804425-58804444 | None:intergenic | 40.0% | |
| TTCAAATCGTAACCCTGCTT+TGG | + | chr6_4:58804429-58804448 | Msa0992030:CDS | 40.0% | |
| CTAATTGTAGGAACCAAAGC+AGG | - | chr6_4:58804445-58804464 | None:intergenic | 40.0% | |
| TATAAAGCACGGACACTCTT+CGG | + | chr6_4:58804581-58804600 | Msa0992030:intron | 40.0% | |
| !! | TGTGATTTGGTGACATTGGT+TGG | + | chr6_4:58804903-58804922 | Msa0992030:intron | 40.0% |
| AAAATGTTGTCAGGACCAAC+TGG | + | chr6_4:58804945-58804964 | Msa0992030:CDS | 40.0% | |
| AGACAAAGAGAGGGATTCTA+AGG | + | chr6_4:58805001-58805020 | Msa0992030:CDS | 40.0% | |
| CGTATGACTCATACAATCTC+AGG | - | chr6_4:58805230-58805249 | None:intergenic | 40.0% | |
| GTTGTAGAATCAGATGTGCT+TGG | + | chr6_4:58805656-58805675 | Msa0992030:CDS | 40.0% | |
| ACTAACGGAATACACGTCAA+AGG | - | chr6_4:58805908-58805927 | None:intergenic | 40.0% | |
| CGACATATTTAGAGACCAAG+TGG | + | chr6_4:58805985-58806004 | Msa0992030:intron | 40.0% | |
| GCATTCAAATGGGAAACGAT+TGG | + | chr6_4:58806221-58806240 | Msa0992030:CDS | 40.0% | |
| GTAGTAACAACAACTCCTGA+GGG | - | chr6_4:58806387-58806406 | None:intergenic | 40.0% | |
| TGTAGTAACAACAACTCCTG+AGG | - | chr6_4:58806388-58806407 | None:intergenic | 40.0% | |
| GTTGTGGATGTAGATGTAGA+TGG | - | chr6_4:58806453-58806472 | None:intergenic | 40.0% | |
| CTTAGGAGGACCTGAATTAT+TGG | - | chr6_4:58806490-58806509 | None:intergenic | 40.0% | |
| AATTCCCAACTGAACTTAGG+AGG | - | chr6_4:58806504-58806523 | None:intergenic | 40.0% | |
| ACAAGTTCAAACATGTGGCA+TGG | - | chr6_4:58806544-58806563 | None:intergenic | 40.0% | |
| TCCACACAAGTTCAAACATG+TGG | - | chr6_4:58806549-58806568 | None:intergenic | 40.0% | |
| ! | TTGATCGATTTCGGTTGGTT+GGG | - | chr6_4:58806833-58806852 | None:intergenic | 40.0% |
| ! | CATTCTTGATCGATTTCGGT+TGG | - | chr6_4:58806838-58806857 | None:intergenic | 40.0% |
| CAACCGAAATCGATCAAGAA+TGG | + | chr6_4:58806836-58806855 | Msa0992030:three_prime_UTR | 40.0% | |
| GAAATCGATCAAGAATGGGA+TGG | + | chr6_4:58806841-58806860 | Msa0992030:three_prime_UTR | 40.0% | |
| CTCTCGTAATTGTGGACTTG+TGG | + | chr6_4:58804016-58804035 | Msa0992030:intron | 45.0% | |
| ATTGTGGACTTGTGGAATGC+TGG | + | chr6_4:58804024-58804043 | Msa0992030:intron | 45.0% | |
| TTGTGGACTTGTGGAATGCT+GGG | + | chr6_4:58804025-58804044 | Msa0992030:intron | 45.0% | |
| ! | CTAGCAGCCTTTTGGTGAAT+TGG | + | chr6_4:58804071-58804090 | Msa0992030:intron | 45.0% |
| ! | AGCCTTTTGGTGAATTGGGT+CGG | + | chr6_4:58804076-58804095 | Msa0992030:intron | 45.0% |
| TCTTCACCTATAAGCTCAGG+TGG | + | chr6_4:58804331-58804350 | Msa0992030:CDS | 45.0% | |
| TGAACCGGGTTCAATGGAAT+GGG | + | chr6_4:58804363-58804382 | Msa0992030:CDS | 45.0% | |
| ATCTCCCATTCCATTGAACC+CGG | - | chr6_4:58804370-58804389 | None:intergenic | 45.0% | |
| GTTCAATGGAATGGGAGATG+AGG | + | chr6_4:58804371-58804390 | Msa0992030:CDS | 45.0% | |
| GTTTGAACCAACATTCCACC+TGG | - | chr6_4:58804397-58804416 | None:intergenic | 45.0% | |
| ! | AGAGTGTCCGTGCTTTATAG+CGG | - | chr6_4:58804580-58804599 | None:intergenic | 45.0% |
| ATTTGACACGTGTTCGACAC+CGG | - | chr6_4:58804619-58804638 | None:intergenic | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | - | chr6_4:58804668-58804687 | None:intergenic | 45.0% | |
| !! | TGACATTGGTTGGTGTTGCA+GGG | + | chr6_4:58804913-58804932 | Msa0992030:intron | 45.0% |
| TTGGAAGTAGATAGGCTTGC+CGG | + | chr6_4:58805164-58805183 | Msa0992030:CDS | 45.0% | |
| TAACAACAACTCCTGAGGGT+TGG | - | chr6_4:58806383-58806402 | None:intergenic | 45.0% | |
| GGTCATTGAAGGAGTAGTTG+TGG | - | chr6_4:58806469-58806488 | None:intergenic | 45.0% | |
| AGGTCCTCCTAAGTTCAGTT+GGG | + | chr6_4:58806497-58806516 | Msa0992030:CDS | 45.0% | |
| GCCACATGTTTGAACTTGTG+TGG | + | chr6_4:58806545-58806564 | Msa0992030:three_prime_UTR | 45.0% | |
| ! | TGATCGATTTCGGTTGGTTG+GGG | - | chr6_4:58806832-58806851 | None:intergenic | 45.0% |
| ! | CTTGATCGATTTCGGTTGGT+TGG | - | chr6_4:58806834-58806853 | None:intergenic | 45.0% |
| TGTGGACTTGTGGAATGCTG+GGG | + | chr6_4:58804026-58804045 | Msa0992030:intron | 50.0% | |
| CACCGACCCAATTCACCAAA+AGG | - | chr6_4:58804081-58804100 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr6_4:58803963-58803982 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr6_4:58803964-58803983 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr6_4:58803963-58803982 | None:intergenic | 50.0% | |
| CTGCAACCACCTGAGCTTAT+AGG | - | chr6_4:58804340-58804359 | None:intergenic | 50.0% | |
| CTGAACCGGGTTCAATGGAA+TGG | + | chr6_4:58804362-58804381 | Msa0992030:CDS | 50.0% | |
| ! | TCTTCGGATTAGGCGTGTTC+CGG | + | chr6_4:58804597-58804616 | Msa0992030:intron | 50.0% |
| !! | GTGACATTGGTTGGTGTTGC+AGG | + | chr6_4:58804912-58804931 | Msa0992030:intron | 50.0% |
| !! | GACATTGGTTGGTGTTGCAG+GGG | + | chr6_4:58804914-58804933 | Msa0992030:intron | 50.0% |
| AAGTAGATAGGCTTGCCGGA+CGG | + | chr6_4:58805168-58805187 | Msa0992030:CDS | 50.0% | |
| ATACACGTCAAAGGACCGCA+TGG | - | chr6_4:58805899-58805918 | None:intergenic | 50.0% | |
| GAACAACAACACCAACCCTC+AGG | + | chr6_4:58806369-58806388 | Msa0992030:CDS | 50.0% | |
| CAGGTCCTCCTAAGTTCAGT+TGG | + | chr6_4:58806496-58806515 | Msa0992030:CDS | 50.0% | |
| TTGTGGAATGCTGGGGTCAG+AGG | + | chr6_4:58804033-58804052 | Msa0992030:intron | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+GGG | - | chr6_4:58804159-58804178 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+GGG | - | chr6_4:58804160-58804179 | None:intergenic | 55.0% | |
| AGGTGGTTGCAGAGCTGAAC+CGG | + | chr6_4:58804348-58804367 | Msa0992030:CDS | 55.0% | |
| CAGAGCTGAACCGGGTTCAA+TGG | + | chr6_4:58804357-58804376 | Msa0992030:CDS | 55.0% | |
| ATGGAATGGGAGATGAGGCC+AGG | + | chr6_4:58804376-58804395 | Msa0992030:CDS | 55.0% | |
| GATGAGGCCAGGTGGAATGT+TGG | + | chr6_4:58804387-58804406 | Msa0992030:CDS | 55.0% | |
| GCACGGACACTCTTCGGATT+AGG | + | chr6_4:58804587-58804606 | Msa0992030:intron | 55.0% | |
| AGTAGATAGGCTTGCCGGAC+GGG | + | chr6_4:58805169-58805188 | Msa0992030:CDS | 55.0% | |
| GACGTAAACACGTACCCGTC+CGG | - | chr6_4:58805186-58805205 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGGGGG+GGG | - | chr6_4:58804157-58804176 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGAGGGG+GGG | - | chr6_4:58804158-58804177 | None:intergenic | 60.0% | |
| GGTGGTTGCAGAGCTGAACC+GGG | + | chr6_4:58804349-58804368 | Msa0992030:CDS | 60.0% | |
| GAATGGGAGATGAGGCCAGG+TGG | + | chr6_4:58804379-58804398 | Msa0992030:CDS | 60.0% | |
| AGAGAGAGAGAGAGGGGGGG+GGG | - | chr6_4:58804155-58804174 | None:intergenic | 65.0% | |
| GAGAGAGAGAGAGAGGGGGG+GGG | - | chr6_4:58804156-58804175 | None:intergenic | 65.0% | |
| AGAGAGAGAGAGGGGGGGGG+GGG | - | chr6_4:58804153-58804172 | None:intergenic | 70.0% | |
| GAGAGAGAGAGAGGGGGGGG+GGG | - | chr6_4:58804154-58804173 | None:intergenic | 70.0% | |
| GGGGGGGGGGGTGATCTCTG+AGG | - | chr6_4:58804137-58804156 | None:intergenic | 75.0% | |
| AGAGAGAGAGGGGGGGGGGG+GGG | - | chr6_4:58804151-58804170 | None:intergenic | 75.0% | |
| GAGAGAGAGAGGGGGGGGGG+GGG | - | chr6_4:58804152-58804171 | None:intergenic | 75.0% | |
| ! | AGAGAGAGGGGGGGGGGGGG+GGG | - | chr6_4:58804149-58804168 | None:intergenic | 80.0% |
| ! | GAGAGAGAGGGGGGGGGGGG+GGG | - | chr6_4:58804150-58804169 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58803963 | 58806873 | 58803963 | ID=Msa0992030;Name=Msa0992030 |
| chr6_4 | mRNA | 58803963 | 58806873 | 58803963 | ID=Msa0992030-mRNA-1;Parent=Msa0992030;Name=Msa0992030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=138|1|1|1|0.75|0.6|5|340|356 |
| chr6_4 | exon | 58803963 | 58803984 | 58803963 | ID=Msa0992030-mRNA-1:exon:11618;Parent=Msa0992030-mRNA-1 |
| chr6_4 | exon | 58804161 | 58804526 | 58804161 | ID=Msa0992030-mRNA-1:exon:11619;Parent=Msa0992030-mRNA-1 |
| chr6_4 | exon | 58804934 | 58805190 | 58804934 | ID=Msa0992030-mRNA-1:exon:11620;Parent=Msa0992030-mRNA-1 |
| chr6_4 | exon | 58805617 | 58805763 | 58805617 | ID=Msa0992030-mRNA-1:exon:11621;Parent=Msa0992030-mRNA-1 |
| chr6_4 | exon | 58806117 | 58806873 | 58806117 | ID=Msa0992030-mRNA-1:exon:11622;Parent=Msa0992030-mRNA-1 |
| chr6_4 | five_prime_UTR | 58803963 | 58803984 | 58803963 | ID=Msa0992030-mRNA-1:five_prime_utr;Parent=Msa0992030-mRNA-1 |
| chr6_4 | five_prime_UTR | 58804161 | 58804276 | 58804161 | ID=Msa0992030-mRNA-1:five_prime_utr;Parent=Msa0992030-mRNA-1 |
| chr6_4 | CDS | 58804277 | 58804526 | 58804277 | ID=Msa0992030-mRNA-1:cds;Parent=Msa0992030-mRNA-1 |
| chr6_4 | CDS | 58804934 | 58805190 | 58804934 | ID=Msa0992030-mRNA-1:cds;Parent=Msa0992030-mRNA-1 |
| chr6_4 | CDS | 58805617 | 58805763 | 58805617 | ID=Msa0992030-mRNA-1:cds;Parent=Msa0992030-mRNA-1 |
| chr6_4 | CDS | 58806117 | 58806533 | 58806117 | ID=Msa0992030-mRNA-1:cds;Parent=Msa0992030-mRNA-1 |
| chr6_4 | three_prime_UTR | 58806534 | 58806873 | 58806534 | ID=Msa0992030-mRNA-1:three_prime_utr;Parent=Msa0992030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
