AlfalfaGEDB | Msa0993760

M. sativa cultivar zhongmu-4 / Msa0993760

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575
PFAM: PF02179.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993760	XP_013442804.1	95.810	358	10	4	1	356	1	355	0.0	691

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993760	sp\|Q0WUQ1\|BAG1_ARATH	54.192	334	111	7	35	356	39	342	3.43e-112	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993760	A0A072TGZ0	95.810	358	10	4	1	356	1	355	0.0	691

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0993760	0.815330	9.772227e-52	-8.615850e-47
Msa0018240	Msa0993760	0.817906	2.585476e-52	-8.615850e-47
Msa0032920	Msa0993760	-0.801339	9.436305e-49	-8.615850e-47
Msa0050160	Msa0993760	0.811318	7.432880e-51	-8.615850e-47
Msa0052870	Msa0993760	0.801072	1.069802e-48	-8.615850e-47
Msa0060760	Msa0993760	0.817571	3.077025e-52	-8.615850e-47
Msa0081520	Msa0993760	0.806774	6.985339e-50	-8.615850e-47
Msa0093850	Msa0993760	0.800496	1.402703e-48	-8.615850e-47
Msa0097080	Msa0993760	0.801886	7.286140e-49	-8.615850e-47
Msa0105120	Msa0993760	0.803950	2.728825e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993760	MtrunA17_Chr6g0473621	95.810	358	10	4	1	356	1	355	0.0	691
Msa0993760	MtrunA17_Chr1g0203771	63.158	361	100	7	1	356	1	333	8.01e-143	407
Msa0993760	MtrunA17_Chr4g0057261	47.541	305	110	5	23	321	20	280	1.61e-79	244
Msa0993760	MtrunA17_Chr2g0285591	46.053	228	118	2	10	237	7	229	7.24e-65	206
Msa0993760	MtrunA17_Chr7g0243051	45.000	220	118	2	19	237	3	220	1.88e-55	181
Msa0993760	MtrunA17_Chr4g0007601	49.462	186	91	1	60	242	27	212	2.18e-51	171
Msa0993760	MtrunA17_Chr6g0458271	41.727	139	75	4	18	156	23	155	6.21e-27	104
Msa0993760	MtrunA17_Chr6g0458281	39.516	124	70	1	34	157	35	153	7.24e-25	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993760	AT5G52060.1	54.192	334	111	7	35	356	39	342	3.48e-113	333
Msa0993760	AT5G07220.1	51.312	343	118	8	17	356	7	303	3.12e-104	309
Msa0993760	AT5G62100.2	48.182	330	108	6	32	355	12	284	1.99e-96	288
Msa0993760	AT5G62100.1	46.921	341	107	8	32	355	12	295	6.64e-93	280
Msa0993760	AT5G62100.5	63.830	188	65	1	32	219	12	196	1.84e-81	247
Msa0993760	AT5G62100.4	62.963	189	67	1	31	219	11	196	7.22e-81	246
Msa0993760	AT5G62100.3	64.286	140	47	1	32	171	12	148	3.17e-59	188
Msa0993760	AT5G62100.6	64.286	140	47	1	32	171	12	148	3.17e-59	188
Msa0993760	AT3G51780.1	43.119	218	105	5	35	237	10	223	2.07e-45	157
Msa0993760	AT5G14360.1	41.818	110	59	1	34	143	47	151	7.90e-22	91.3

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Find 100 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATATAACACTCCAAG+TGG	0.590061	6_4:-66914213	None:intergenic
AAAATGTTGTCAGGACCAAC+TGG	0.440623	6_4:+66912570	Msa0993760:CDS
AAACATTTGGTAAATGAATT+CGG	0.349014	6_4:-66914365	None:intergenic
AACCGAAATCGATCAAGAAT+GGG	0.508928	6_4:+66914462	Msa0993760:three_prime_UTR
AAGAATTCCCAACTGAACTT+AGG	0.466020	6_4:-66914129	None:intergenic
AAGTAGATAGGCTTGCCGGA+CGG	0.614233	6_4:+66912793	Msa0993760:CDS
AATCAATAATTAGCAAAGGT+GGG	0.534823	6_4:+66913255	Msa0993760:CDS
AATCAATTGCTTAAATTGGA+TGG	0.481120	6_4:+66913323	Msa0993760:CDS
AATTCATTTACCAAATGTTT+GGG	0.374969	6_4:+66914368	Msa0993760:three_prime_UTR
AATTCCCAACTGAACTTAGG+AGG	0.568401	6_4:-66914126	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAGATTTACCAAATG+TGG	-	chr6_4:66912146-66912165	None:intergenic	30.0%
TGTCAAATTATTAGCTGTGT+CGG	+	chr6_4:66912256-66912275	Msa0993760:intron	30.0%
TCAAAAATCGTAATGAAGCA+TGG	-	chr6_4:66912305-66912324	None:intergenic	30.0%
TCGAGTTTAAATCTTAACTC+AGG	-	chr6_4:66912380-66912399	None:intergenic	30.0%
GATTTGAAGAAAATGTTGTC+AGG	+	chr6_4:66912561-66912580	Msa0993760:CDS	30.0%
ATCCTATTAGTCAAGAGAAA+AGG	+	chr6_4:66912703-66912722	Msa0993760:CDS	30.0%
AACAATTATATGAGTGAGGT+TGG	+	chr6_4:66913155-66913174	Msa0993760:intron	30.0%
GAATCAATAATTAGCAAAGG+TGG	+	chr6_4:66913254-66913273	Msa0993760:CDS	30.0%
TTGGATGGTATAATTACTGA+TGG	+	chr6_4:66913338-66913357	Msa0993760:CDS	30.0%
CAAATTGCAAAGAAAAATGC+AGG	+	chr6_4:66913367-66913386	Msa0993760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	66911587	66914498	66911587	ID=Msa0993760;Name=Msa0993760
chr6_4	mRNA	66911587	66914498	66911587	ID=Msa0993760-mRNA-1;Parent=Msa0993760;Name=Msa0993760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=138\|1\|1\|1\|0.75\|0.6\|5\|340\|356
chr6_4	exon	66911587	66911608	66911587	ID=Msa0993760-mRNA-1:exon:12463;Parent=Msa0993760-mRNA-1
chr6_4	exon	66911786	66912151	66911786	ID=Msa0993760-mRNA-1:exon:12464;Parent=Msa0993760-mRNA-1
chr6_4	exon	66912559	66912815	66912559	ID=Msa0993760-mRNA-1:exon:12465;Parent=Msa0993760-mRNA-1
chr6_4	exon	66913242	66913388	66913242	ID=Msa0993760-mRNA-1:exon:12466;Parent=Msa0993760-mRNA-1
chr6_4	exon	66913742	66914498	66913742	ID=Msa0993760-mRNA-1:exon:12467;Parent=Msa0993760-mRNA-1
chr6_4	five_prime_UTR	66911587	66911608	66911587	ID=Msa0993760-mRNA-1:five_prime_utr;Parent=Msa0993760-mRNA-1
chr6_4	five_prime_UTR	66911786	66911901	66911786	ID=Msa0993760-mRNA-1:five_prime_utr;Parent=Msa0993760-mRNA-1
chr6_4	CDS	66911902	66912151	66911902	ID=Msa0993760-mRNA-1:cds;Parent=Msa0993760-mRNA-1
chr6_4	CDS	66912559	66912815	66912559	ID=Msa0993760-mRNA-1:cds;Parent=Msa0993760-mRNA-1
chr6_4	CDS	66913242	66913388	66913242	ID=Msa0993760-mRNA-1:cds;Parent=Msa0993760-mRNA-1
chr6_4	CDS	66913742	66914158	66913742	ID=Msa0993760-mRNA-1:cds;Parent=Msa0993760-mRNA-1
chr6_4	three_prime_UTR	66914159	66914498	66914159	ID=Msa0993760-mRNA-1:three_prime_utr;Parent=Msa0993760-mRNA-1

Gene Sequence

>Msa0993760

ATGTTGAGGATGAGGAATAATCATAATCATGGTAATAATAAGACAAATGGTGTTTCTTCACCTATAAGCTCAGGTGGTTGCAGAGCTGAACCGGGTTCAATGGAATGGGAGATGAGGCCAGGTGGAATGTTGGTTCAAACAAGAACCACTGATTCAAATCGTAACCCTGCTTTGGTTCCTACAATTAGAGTTAGGGTCAAGTTTGGTTCAATTTATCATGAAGTCAATATTAGTTCACAAGCCACATTTGGGGATTTGAAGAAAATGTTGTCAGGACCAACTGGTTTACATCATCAAGATCAAAAGTTGTTTTACAAAGACAAAGAGAGGGATTCTAAGGCTTTTCTTGATGTAGTTGGTGTAAAGGACAAATCTAAACTAGTTCTTGTGGAAGATCCTATTAGTCAAGAGAAAAGGATTTTGGAATTGAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAATCTATCTCACAGATTAGCTTGGAAGTAGATAGGCTTGCCGGACGGGTATCTGCTTTTGAATCAATAATTAGCAAAGGTGGGAAAGTTGTAGAATCAGATGTGCTTGGTCTTATTGAGCTATTGATGAATCAATTGCTTAAATTGGATGGTATAATTACTGATGGCGATGTCAAATTGCAAAGAAAAATGCAGGTAAGGAGAGTTCAAAAGTATGTTGAAACATTGGATATGCTAAAAGCTAAGAATTCTATACAAAATGGCAATGATGTTCATGCTCAAGTGCAACCTCAACAAAAGCATTCAAATGGGAAACGATTGGAAACAATTCAAGAGCAACCACAACAAATTCATTCAAATGGTTATCATGGGTCAATAGTACCAATTCAAGAACAACAAGAAGAACAACCTAGAAAAAACTCAAATGAGCTTTCACTTGTTTTTCAGGAACAACAACACCAACCCTCAGGAGTTGTTGTTACTACAAAATGGGAGACATTTGATTCTACCCCACCATTAATCACATTTCCATCTACATCTACATCCACAACTACTCCTTCAATGACCAATAATTCAGGTCCTCCTAAGTTCAGTTGGGAATTCTTTGAGTGA

Protein sequence

>Msa0993760

MLRMRNNHNHGNNKTNGVSSPISSGGCRAEPGSMEWEMRPGGMLVQTRTTDSNRNPALVPTIRVRVKFGSIYHEVNISSQATFGDLKKMLSGPTGLHHQDQKLFYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRILELRKNAKMEKAAKSISQISLEVDRLAGRVSAFESIISKGGKVVESDVLGLIELLMNQLLKLDGIITDGDVKLQRKMQVRRVQKYVETLDMLKAKNSIQNGNDVHAQVQPQQKHSNGKRLETIQEQPQQIHSNGYHGSIVPIQEQQEEQPRKNSNELSLVFQEQQHQPSGVVVTTKWETFDSTPPLITFPSTSTSTTTPSMTNNSGPPKFSWEFFE*