Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837020 | XP_024639943.1 | 91.737 | 472 | 21 | 2 | 1 | 471 | 1 | 455 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837020 | sp|Q9USQ4|SIM3_SCHPO | 25.806 | 341 | 207 | 11 | 45 | 371 | 19 | 327 | 1.36e-11 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837020 | G7K9G9 | 91.737 | 472 | 21 | 2 | 1 | 471 | 1 | 455 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090080 | Msa0837020 | 0.812043 | 5.170090e-51 | -8.615850e-47 |
| Msa0660850 | Msa0837020 | 0.852384 | 4.782476e-61 | -8.615850e-47 |
| Msa0704980 | Msa0837020 | 0.815322 | 9.811978e-52 | -8.615850e-47 |
| Msa0709730 | Msa0837020 | 0.805372 | 1.378181e-49 | -8.615850e-47 |
| Msa0757940 | Msa0837020 | 0.845393 | 4.177105e-59 | -8.615850e-47 |
| Msa0799260 | Msa0837020 | 0.857435 | 1.636097e-62 | -8.615850e-47 |
| Msa0799310 | Msa0837020 | 0.856338 | 3.443158e-62 | -8.615850e-47 |
| Msa0837020 | Msa0837630 | 0.824063 | 9.888987e-54 | -8.615850e-47 |
| Msa0837020 | Msa1191830 | 0.806124 | 9.578214e-50 | -8.615850e-47 |
| Msa0837020 | Msa1260530 | 0.805822 | 1.108637e-49 | -8.615850e-47 |
| Msa0837020 | Msa1418690 | 0.832346 | 9.963509e-56 | -8.615850e-47 |
| Msa0164770 | Msa0837020 | 0.809678 | 1.680248e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837020 | MtrunA17_Chr5g0403081 | 91.737 | 472 | 21 | 2 | 1 | 471 | 1 | 455 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837020 | AT4G37210.1 | 47.884 | 449 | 171 | 11 | 56 | 471 | 74 | 492 | 2.03e-115 | 348 |
| Msa0837020 | AT4G37210.2 | 47.734 | 331 | 123 | 5 | 56 | 365 | 74 | 375 | 3.03e-85 | 267 |
Find 147 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGAGGGTTTGGGTTT+TGG | 0.051805 | 5_4:-10745195 | None:intergenic |
| ATTATATGCATGTTCCTTTA+AGG | 0.122207 | 5_4:+10748930 | Msa0837020:three_prime_UTR |
| TTCTTCAACCATGGTGATTT+TGG | 0.123936 | 5_4:-10745277 | None:intergenic |
| TGAGGAAGCCGTTGCTTATT+TGG | 0.172827 | 5_4:+10748108 | Msa0837020:CDS |
| AAGAGGGAAAGTTGAAATTT+TGG | 0.204790 | 5_4:-10745227 | None:intergenic |
| ATCTCAGCGAGAATTGATTT+TGG | 0.224515 | 5_4:-10748399 | None:intergenic |
| CAATTTGCTCAATGAGGGTT+TGG | 0.248194 | 5_4:-10745202 | None:intergenic |
| ACCAAAATCATTCTCCTTCA+TGG | 0.252070 | 5_4:-10745502 | None:intergenic |
| TTTGGCGACTCTTTGAATTA+TGG | 0.252411 | 5_4:+10748728 | Msa0837020:three_prime_UTR |
| TTAAGGTTTGGCGCTGAATT+AGG | 0.256306 | 5_4:+10748947 | Msa0837020:three_prime_UTR |
| AATTCAGCGCCAAACCTTAA+AGG | 0.265840 | 5_4:-10748944 | None:intergenic |
| ATCAACAGAGTTGCCCATTA+TGG | 0.268360 | 5_4:+10746525 | Msa0837020:intron |
| GCCATGAAGGAGAATGATTT+TGG | 0.276030 | 5_4:+10745501 | Msa0837020:CDS |
| TGGAGACTCCTCCTGCTTCT+TGG | 0.302677 | 5_4:-10746643 | None:intergenic |
| ATCTTCCTGGTCGTTCTTAC+CGG | 0.304993 | 5_4:-10747492 | None:intergenic |
| CCTCCAAACACAAGCATATA+CGG | 0.321319 | 5_4:-10748072 | None:intergenic |
| TATCAACTTGTTCCATAGTA+TGG | 0.325848 | 5_4:-10747628 | None:intergenic |
| CGGGAGCAAGTTCACCATAA+TGG | 0.339759 | 5_4:-10746539 | None:intergenic |
| CACTATCCTCATCATCTTCC+TGG | 0.352582 | 5_4:-10747505 | None:intergenic |
| ATTTCTTATTTCACAAGTTA+AGG | 0.352836 | 5_4:-10748047 | None:intergenic |
| TCTTCGGTTGTTTCTAATGC+TGG | 0.357966 | 5_4:-10748642 | None:intergenic |
| GGAGACTCCTCCTGCTTCTT+GGG | 0.358489 | 5_4:-10746642 | None:intergenic |
| ATGCATGTTCCTTTAAGGTT+TGG | 0.365790 | 5_4:+10748935 | Msa0837020:three_prime_UTR |
| GTCCACACATACTACAAATA+TGG | 0.368782 | 5_4:+10746567 | Msa0837020:CDS |
| CTGGTTCAACCAGCTGTTCT+AGG | 0.369035 | 5_4:-10747827 | None:intergenic |
| TTTCCGTATATGCTTGTGTT+TGG | 0.380312 | 5_4:+10748069 | Msa0837020:CDS |
| CGCAGGTCTCTCAAGTGAAC+TGG | 0.386407 | 5_4:+10748258 | Msa0837020:CDS |
| TTCCTTTCCACTGCCTGCCT+TGG | 0.387277 | 5_4:-10748433 | None:intergenic |
| AGACGAGTCTGACCTGGATT+TGG | 0.388595 | 5_4:+10747556 | Msa0837020:CDS |
| AAAGCAATCTGTCCATACTA+TGG | 0.392176 | 5_4:+10747616 | Msa0837020:CDS |
| TCAGGAGGAAGCCGATCCTT+TGG | 0.393753 | 5_4:+10746611 | Msa0837020:CDS |
| GGGAGCAAGTTCACCATAAT+GGG | 0.399197 | 5_4:-10746538 | None:intergenic |
| TCAGCAATGTTTCTATCATC+TGG | 0.400267 | 5_4:-10747846 | None:intergenic |
| GTTGCGGCGGATTCCACGGC+GGG | 0.401870 | 5_4:-10745405 | None:intergenic |
| AATTTGCTCAATGAGGGTTT+GGG | 0.404009 | 5_4:-10745201 | None:intergenic |
| GGATTCCACGGCGGGGTTGA+CGG | 0.406936 | 5_4:-10745397 | None:intergenic |
| CAGGAGGAAGCCGATCCTTT+GGG | 0.407516 | 5_4:+10746612 | Msa0837020:CDS |
| TTTGTATGGAATGATGAGTT+TGG | 0.415931 | 5_4:+10748710 | Msa0837020:three_prime_UTR |
| CTAGGATGGATAGAGCCTTC+TGG | 0.419799 | 5_4:-10747809 | None:intergenic |
| GTCACACATCTTGGTGTAGT+AGG | 0.440218 | 5_4:+10748561 | Msa0837020:CDS |
| CCGTATATGCTTGTGTTTGG+AGG | 0.449286 | 5_4:+10748072 | Msa0837020:CDS |
| GGCTGATGAGCTGATGGAAA+AGG | 0.453203 | 5_4:+10745470 | Msa0837020:CDS |
| CGCAATTGAGTTATTAGTCT+CGG | 0.463063 | 5_4:-10748209 | None:intergenic |
| CTTCACAGGTCCATCTTTGT+CGG | 0.471230 | 5_4:-10746673 | None:intergenic |
| AAATAAGCAACGGCTTCCTC+AGG | 0.479407 | 5_4:-10748106 | None:intergenic |
| GAAGGCTACATCTGTTTGTA+AGG | 0.480775 | 5_4:+10748132 | Msa0837020:CDS |
| GTGACAGGTTCGGTTGGTTG+AGG | 0.484148 | 5_4:-10745333 | None:intergenic |
| CGACTCTTTGAATTATGGAT+AGG | 0.484982 | 5_4:+10748733 | Msa0837020:three_prime_UTR |
| GTGGTTTATGGTTCCGTCGA+CGG | 0.485867 | 5_4:-10745358 | None:intergenic |
| AACATTGGCAGATGTTGCTC+TGG | 0.486208 | 5_4:+10747658 | Msa0837020:CDS |
| CAGCGACGGTCAGAAGTCTC+TGG | 0.487381 | 5_4:+10745443 | Msa0837020:CDS |
| ATAGCCGTGCTCTTGAGATC+AGG | 0.489154 | 5_4:+10745541 | Msa0837020:CDS |
| CATTATCCACTTCTGACTCC+TGG | 0.495772 | 5_4:-10746767 | None:intergenic |
| CTCAAGTGAACTGGAAAAGA+AGG | 0.499187 | 5_4:+10748267 | Msa0837020:CDS |
| ACAAATTCTTGCAAATTCCA+TGG | 0.500578 | 5_4:+10748756 | Msa0837020:three_prime_UTR |
| GCTCACACCAATGGATCTGC+TGG | 0.500908 | 5_4:+10748537 | Msa0837020:CDS |
| CAGGAGTCAGAAGTGGATAA+TGG | 0.501825 | 5_4:+10746768 | Msa0837020:CDS |
| GGGTGCTGTTCCCAAGAAGC+AGG | 0.502021 | 5_4:+10746632 | Msa0837020:CDS |
| GTTCCGTCGACGGCTGTGAC+AGG | 0.508808 | 5_4:-10745348 | None:intergenic |
| CCACATGGCGCCGACAAAGA+TGG | 0.513330 | 5_4:+10746663 | Msa0837020:CDS |
| TGGCAACGCATGATTTATAC+TGG | 0.515317 | 5_4:+10748677 | Msa0837020:exon |
| TCTGCTGGAGTCACACATCT+TGG | 0.516862 | 5_4:+10748552 | Msa0837020:CDS |
| TCTATCCATCCTAGAACAGC+TGG | 0.517147 | 5_4:+10747818 | Msa0837020:CDS |
| GTCGACGGCTGTGACAGGTT+CGG | 0.517732 | 5_4:-10745343 | None:intergenic |
| GCATTCATAGCACCCTTCAC+AGG | 0.519577 | 5_4:-10746687 | None:intergenic |
| ATTGGTGTGAGCGGTTGAAA+TGG | 0.519732 | 5_4:-10748526 | None:intergenic |
| ATCCGCCGCAACTTCCGCTC+CGG | 0.519956 | 5_4:+10745416 | Msa0837020:CDS |
| CAGAGACTTCTGACCGTCGC+TGG | 0.521638 | 5_4:-10745442 | None:intergenic |
| TGGTTCAATTTGCTCAATGA+GGG | 0.522169 | 5_4:-10745207 | None:intergenic |
| TCCGCTCCGGCGTCCAGCGA+CGG | 0.522352 | 5_4:+10745429 | Msa0837020:CDS |
| TTGGTTCAATTTGCTCAATG+AGG | 0.523287 | 5_4:-10745208 | None:intergenic |
| CGACAAAGATGGACCTGTGA+AGG | 0.523351 | 5_4:+10746674 | Msa0837020:CDS |
| TGCACTGTTATACAAGGCTC+AGG | 0.523635 | 5_4:+10746593 | Msa0837020:CDS |
| TGATGAAGACGAGTCTGACC+TGG | 0.523764 | 5_4:+10747550 | Msa0837020:CDS |
| GTGTGAGCGGTTGAAATGGT+TGG | 0.526499 | 5_4:-10748522 | None:intergenic |
| TGTAGGTTTATGTGTAGCTA+AGG | 0.527384 | 5_4:+10748821 | Msa0837020:three_prime_UTR |
| GCATCTGCCAAGGCAGGCAG+TGG | 0.528560 | 5_4:+10748426 | Msa0837020:CDS |
| CGCCGGAGCGGAAGTTGCGG+CGG | 0.530654 | 5_4:-10745418 | None:intergenic |
| ATTCTAGCATCTGCCAAGGC+AGG | 0.536075 | 5_4:+10748420 | Msa0837020:CDS |
| AGCCGTTGCTTATTTGGAGA+AGG | 0.538307 | 5_4:+10748114 | Msa0837020:CDS |
| GGACATGGCTGATGAGCTGA+TGG | 0.539014 | 5_4:+10745464 | Msa0837020:CDS |
| AGTTGGAGTTTCTTCAACCA+TGG | 0.544227 | 5_4:-10745286 | None:intergenic |
| GGATAGTGATACTGAAGAGT+TGG | 0.545697 | 5_4:+10747520 | Msa0837020:CDS |
| TCACACATCTTGGTGTAGTA+GGG | 0.546130 | 5_4:+10748562 | Msa0837020:CDS |
| ACCGCTCTATGAAATTGTAA+AGG | 0.546200 | 5_4:-10745109 | None:intergenic |
| GCAGATGTTGCTCTGGAAAG+AGG | 0.547971 | 5_4:+10747665 | Msa0837020:CDS |
| CGGTCAGAAGTCTCTGGACA+TGG | 0.548472 | 5_4:+10745449 | Msa0837020:CDS |
| GGAAGTTGCGGCGGATTCCA+CGG | 0.552182 | 5_4:-10745409 | None:intergenic |
| TTCAACCAGCTGTTCTAGGA+TGG | 0.560558 | 5_4:-10747823 | None:intergenic |
| AAAGGGAAACAAGGCCATGA+AGG | 0.561352 | 5_4:+10745488 | Msa0837020:CDS |
| CCATCTTTGTCGGCGCCATG+TGG | 0.566588 | 5_4:-10746663 | None:intergenic |
| ATTTCAACCGCTCACACCAA+TGG | 0.569574 | 5_4:+10748528 | Msa0837020:CDS |
| GGACGCCGGAGCGGAAGTTG+CGG | 0.569781 | 5_4:-10745421 | None:intergenic |
| GTAGTATGTGTGGACACACT+CGG | 0.570065 | 5_4:-10746559 | None:intergenic |
| AACCATATTTGTAGTATGTG+TGG | 0.571397 | 5_4:-10746569 | None:intergenic |
| AATGCTTGCTTCTGCCACGC+TGG | 0.573158 | 5_4:-10748610 | None:intergenic |
| CATCTTGGTGTAGTAGGGAG+AGG | 0.573263 | 5_4:+10748567 | Msa0837020:CDS |
| TGTGACTCCAGCAGATCCAT+TGG | 0.573283 | 5_4:-10748544 | None:intergenic |
| ACGGCTGTGACAGGTTCGGT+TGG | 0.577242 | 5_4:-10745339 | None:intergenic |
| ACGGAAGTCTCAGATGCAGT+TGG | 0.578153 | 5_4:-10745303 | None:intergenic |
| ACCTTTACAATTTCATAGAG+CGG | 0.584625 | 5_4:+10745108 | Msa0837020:five_prime_UTR |
| GGGAACAGCACCCAAAGGAT+CGG | 0.585670 | 5_4:-10746622 | None:intergenic |
| AGCAGATCCATTGGTGTGAG+CGG | 0.586600 | 5_4:-10748535 | None:intergenic |
| AAGAGTGAGCTCCTCACAGT+TGG | 0.588916 | 5_4:+10748467 | Msa0837020:CDS |
| GCTGATGAGCTGATGGAAAA+GGG | 0.592738 | 5_4:+10745471 | Msa0837020:CDS |
| AAACAACCAGGAGTCAGAAG+TGG | 0.594428 | 5_4:+10746761 | Msa0837020:CDS |
| GCTCTATGAAATTGTAAAGG+TGG | 0.601866 | 5_4:-10745106 | None:intergenic |
| ACCGTCGCTGGACGCCGGAG+CGG | 0.603097 | 5_4:-10745430 | None:intergenic |
| GAACCTGTCACAGCCGTCGA+CGG | 0.603391 | 5_4:+10745345 | Msa0837020:CDS |
| GAACATGCATATAATACTAA+CGG | 0.604036 | 5_4:-10748922 | None:intergenic |
| TGGTTGTGCACTGTTATACA+AGG | 0.606143 | 5_4:+10746587 | Msa0837020:CDS |
| TGCCAAGGCAGGCAGTGGAA+AGG | 0.606956 | 5_4:+10748431 | Msa0837020:CDS |
| AGTCTGACCTGGATTTGGCA+TGG | 0.608986 | 5_4:+10747561 | Msa0837020:CDS |
| GAGCTCACTCTTGCTAGAGA+TGG | 0.609882 | 5_4:-10748456 | None:intergenic |
| GACAAAGATGGACCTGTGAA+GGG | 0.610152 | 5_4:+10746675 | Msa0837020:CDS |
| TAGTATGTGTGGACACACTC+GGG | 0.612826 | 5_4:-10746558 | None:intergenic |
| TTCCACGGCGGGGTTGACGG+TGG | 0.613242 | 5_4:-10745394 | None:intergenic |
| GGAGGTTAGTTCAAAACCTG+AGG | 0.614213 | 5_4:+10748090 | Msa0837020:CDS |
| TTCTTGGGAACAGCACCCAA+AGG | 0.615458 | 5_4:-10746627 | None:intergenic |
| GAACGACCAGGAAGATGATG+AGG | 0.618052 | 5_4:+10747499 | Msa0837020:CDS |
| CGAGACTAATAACTCAATTG+CGG | 0.622926 | 5_4:+10748210 | Msa0837020:CDS |
| ATTGCTTGCAAAAGATGCAG+TGG | 0.625303 | 5_4:-10746718 | None:intergenic |
| AGTTGATATACTATCAACAT+TGG | 0.628260 | 5_4:+10747643 | Msa0837020:CDS |
| GCAGAAATTGAAACTCTCGC+AGG | 0.629007 | 5_4:+10748241 | Msa0837020:CDS |
| GCTGATGGAAAAGGGAAACA+AGG | 0.630536 | 5_4:+10745479 | Msa0837020:CDS |
| AGCCTTCTCCAAATAAGCAA+CGG | 0.630794 | 5_4:-10748116 | None:intergenic |
| GGTTGGTTGAGGCATTGTGA+CGG | 0.637516 | 5_4:-10745322 | None:intergenic |
| AACCACCGTCAACCCCGCCG+TGG | 0.638823 | 5_4:+10745392 | Msa0837020:CDS |
| TTGGCTACAGAGAACAGCAG+TGG | 0.641006 | 5_4:+10748486 | Msa0837020:CDS |
| TGAACCTGATCTCAAGAGCA+CGG | 0.642142 | 5_4:-10745545 | None:intergenic |
| TTCCTGAAAACAGTCAACCA+TGG | 0.642562 | 5_4:-10748773 | None:intergenic |
| AGTTGCGGCGGATTCCACGG+CGG | 0.642852 | 5_4:-10745406 | None:intergenic |
| GATACTGAAGAGTTGGCAGA+AGG | 0.643075 | 5_4:+10747527 | Msa0837020:CDS |
| ATCTCTCTCTGACTACCAGA+AGG | 0.643674 | 5_4:+10747794 | Msa0837020:CDS |
| ACAACCGAAGAGAAAAGTGA+TGG | 0.651076 | 5_4:+10748654 | Msa0837020:CDS |
| AAGCAGGAGGAGTCTCCACA+TGG | 0.654637 | 5_4:+10746648 | Msa0837020:CDS |
| GGACGTGACTTCAAACAACC+AGG | 0.655621 | 5_4:+10746749 | Msa0837020:CDS |
| ACTGTTATACAAGGCTCAGG+AGG | 0.655923 | 5_4:+10746596 | Msa0837020:CDS |
| ACCGAAGAGAAAAGTGATGG+TGG | 0.656455 | 5_4:+10748657 | Msa0837020:CDS |
| TGCTGTTCCCAAGAAGCAGG+AGG | 0.664556 | 5_4:+10746635 | Msa0837020:CDS |
| TGAGATTCTAGCATCTGCCA+AGG | 0.664765 | 5_4:+10748416 | Msa0837020:CDS |
| TCAAAATAATAATCATGACA+AGG | 0.667146 | 5_4:-10747876 | None:intergenic |
| AGTGTCCGGTAAGAACGACC+AGG | 0.691630 | 5_4:+10747487 | Msa0837020:intron |
| GCGATCATCAAATGCCAGCG+TGG | 0.691972 | 5_4:+10748596 | Msa0837020:CDS |
| AAATTCTCCCAAAATCACCA+TGG | 0.699755 | 5_4:+10745269 | Msa0837020:exon |
| GTTCTCTGTAGCCAACTGTG+AGG | 0.704965 | 5_4:-10748478 | None:intergenic |
| TTGCGGCGGATTCCACGGCG+GGG | 0.708348 | 5_4:-10745404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAATAAATGTAAGA+TGG | - | chr5_4:10747699-10747718 | None:intergenic | 10.0% |
| !!! | TTTTTATTAACATTTAAACA+GGG | - | chr5_4:10747930-10747949 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAACATTTAAAC+AGG | - | chr5_4:10747931-10747950 | None:intergenic | 10.0% |
| !!! | TAATATCTGAAATTTGAAAT+AGG | + | chr5_4:10746242-10746261 | Msa0837020:intron | 15.0% |
| !! | TTAGTTATCATAACAATATT+GGG | + | chr5_4:10746312-10746331 | Msa0837020:intron | 15.0% |
| !!! | TTTTTTTTTAACAACAATTC+AGG | - | chr5_4:10747251-10747270 | None:intergenic | 15.0% |
| !! | ATTAATAATTTCTCCAATTT+AGG | + | chr5_4:10747992-10748011 | Msa0837020:intron | 15.0% |
| !!! | TATGTTATTTTGATATAACA+TGG | + | chr5_4:10748329-10748348 | Msa0837020:intron | 15.0% |
| !! | GAAAAATGAAAGTGAAATTA+AGG | - | chr5_4:10745144-10745163 | None:intergenic | 20.0% |
| !!! | TGATCTTTAGGTTAAATTAT+TGG | + | chr5_4:10745665-10745684 | Msa0837020:intron | 20.0% |
| !!! | GATCTTTAGGTTAAATTATT+GGG | + | chr5_4:10745666-10745685 | Msa0837020:intron | 20.0% |
| !!! | AAGATGTTATTGTCTTTTTT+TGG | + | chr5_4:10746054-10746073 | Msa0837020:intron | 20.0% |
| !!! | ATAGACATTTTATTCTCAAA+AGG | + | chr5_4:10746121-10746140 | Msa0837020:intron | 20.0% |
| !! | TATTAATTGATGAAACGAAA+TGG | + | chr5_4:10746206-10746225 | Msa0837020:intron | 20.0% |
| !! | CTTAGTTATCATAACAATAT+TGG | + | chr5_4:10746311-10746330 | Msa0837020:intron | 20.0% |
| !!! | CATATAATTGATTTGTACAT+GGG | - | chr5_4:10746434-10746453 | None:intergenic | 20.0% |
| !!! | ACATATAATTGATTTGTACA+TGG | - | chr5_4:10746435-10746454 | None:intergenic | 20.0% |
| !!! | ACTAAAATGAGAACATTTTA+CGG | + | chr5_4:10746826-10746845 | Msa0837020:intron | 20.0% |
| !!! | AATAGATAGAAAGTGTTTTA+TGG | + | chr5_4:10746930-10746949 | Msa0837020:intron | 20.0% |
| !! | TCAAAATAATAATCATGACA+AGG | - | chr5_4:10747879-10747898 | None:intergenic | 20.0% |
| !!! | ATTTCTTATTTCACAAGTTA+AGG | - | chr5_4:10748050-10748069 | None:intergenic | 20.0% |
| !!! | AAAAACCATGAGAATTTTTA+TGG | + | chr5_4:10748886-10748905 | Msa0837020:three_prime_UTR | 20.0% |
| !! | TAAATCCATAAAAATTCTCA+TGG | - | chr5_4:10748894-10748913 | None:intergenic | 20.0% |
| !!! | GGGTTTTAAGATTTTCTTTA+TGG | - | chr5_4:10745176-10745195 | None:intergenic | 25.0% |
| ! | TAAATTATTGGGAATTGAGT+TGG | + | chr5_4:10745677-10745696 | Msa0837020:intron | 25.0% |
| !!! | ATTTTTTTGCATAAGCTATG+TGG | - | chr5_4:10745923-10745942 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+TGG | + | chr5_4:10746016-10746035 | Msa0837020:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACT+GGG | + | chr5_4:10746017-10746036 | Msa0837020:intron | 25.0% |
| ! | AATATATGAAAATGCAGAAG+TGG | - | chr5_4:10746174-10746193 | None:intergenic | 25.0% |
| !!! | AAATGTTCTCATTTTAGTGA+AGG | - | chr5_4:10746824-10746843 | None:intergenic | 25.0% |
| !!! | ATGGCAATGTTTTTAATGAA+AGG | + | chr5_4:10746949-10746968 | Msa0837020:intron | 25.0% |
| !!! | TGGCAATGTTTTTAATGAAA+GGG | + | chr5_4:10746950-10746969 | Msa0837020:intron | 25.0% |
| ! | TTCCTTATTCTCTATTTATG+TGG | + | chr5_4:10746986-10747005 | Msa0837020:intron | 25.0% |
| ! | TTCCACATAAATAGAGAATA+AGG | - | chr5_4:10746991-10747010 | None:intergenic | 25.0% |
| !!! | TTTTTTAACAACAATTCAGG+AGG | - | chr5_4:10747248-10747267 | None:intergenic | 25.0% |
| !!! | ACTATTTCTTTCACTTTTCT+TGG | + | chr5_4:10747380-10747399 | Msa0837020:intron | 25.0% |
| !! | AGTTGATATACTATCAACAT+TGG | + | chr5_4:10747643-10747662 | Msa0837020:CDS | 25.0% |
| !!! | ACAATTCAACTTTTAGAACT+GGG | - | chr5_4:10747739-10747758 | None:intergenic | 25.0% |
| !!! | AACAATTCAACTTTTAGAAC+TGG | - | chr5_4:10747740-10747759 | None:intergenic | 25.0% |
| ! | TCTAAAAGTTGAATTGTTTC+TGG | + | chr5_4:10747742-10747761 | Msa0837020:intron | 25.0% |
| !! | CTAAAAGTTGAATTGTTTCT+GGG | + | chr5_4:10747743-10747762 | Msa0837020:intron | 25.0% |
| ! | TTGATATAACATGGAATGTA+TGG | + | chr5_4:10748338-10748357 | Msa0837020:intron | 25.0% |
| !! | AAAATTCTCATGGTTTTTCT+AGG | - | chr5_4:10748884-10748903 | None:intergenic | 25.0% |
| ! | GAACATGCATATAATACTAA+CGG | - | chr5_4:10748925-10748944 | None:intergenic | 25.0% |
| ! | ATTATATGCATGTTCCTTTA+AGG | + | chr5_4:10748930-10748949 | Msa0837020:three_prime_UTR | 25.0% |
| ACCTTTACAATTTCATAGAG+CGG | + | chr5_4:10745108-10745127 | Msa0837020:five_prime_UTR | 30.0% | |
| ! | AAGAGGGAAAGTTGAAATTT+TGG | - | chr5_4:10745230-10745249 | None:intergenic | 30.0% |
| GCTTAATTGTGAATGAAACT+GGG | - | chr5_4:10745765-10745784 | None:intergenic | 30.0% | |
| AGCTTAATTGTGAATGAAAC+TGG | - | chr5_4:10745766-10745785 | None:intergenic | 30.0% | |
| ! | GTGGTTTTCATTAGTTATCT+TGG | - | chr5_4:10745904-10745923 | None:intergenic | 30.0% |
| TAACATCTTACTATAGTGCA+TGG | - | chr5_4:10746043-10746062 | None:intergenic | 30.0% | |
| CTATAATCAAGCAATTAAGC+AGG | - | chr5_4:10746105-10746124 | None:intergenic | 30.0% | |
| ! | TCTGAAATTTGAAATAGGTC+AGG | + | chr5_4:10746247-10746266 | Msa0837020:intron | 30.0% |
| ! | CTGAAATTTGAAATAGGTCA+GGG | + | chr5_4:10746248-10746267 | Msa0837020:intron | 30.0% |
| ! | TGAAATTTGAAATAGGTCAG+GGG | + | chr5_4:10746249-10746268 | Msa0837020:intron | 30.0% |
| AACAATATTGGGAAACTCTT+TGG | + | chr5_4:10746323-10746342 | Msa0837020:intron | 30.0% | |
| AACCATATTTGTAGTATGTG+TGG | - | chr5_4:10746572-10746591 | None:intergenic | 30.0% | |
| ! | TGAGAACATTTTACGGAATT+TGG | + | chr5_4:10746833-10746852 | Msa0837020:intron | 30.0% |
| TGTATGATATTAATCTGCGT+TGG | + | chr5_4:10746868-10746887 | Msa0837020:intron | 30.0% | |
| CTATTATTTGACATGATGAG+TGG | - | chr5_4:10746915-10746934 | None:intergenic | 30.0% | |
| !! | AGTAAACAGTTGATAACTCA+AGG | - | chr5_4:10747022-10747041 | None:intergenic | 30.0% |
| AGGAAAAAATTCCCTGATTA+GGG | - | chr5_4:10747088-10747107 | None:intergenic | 30.0% | |
| AAGGAAAAAATTCCCTGATT+AGG | - | chr5_4:10747089-10747108 | None:intergenic | 30.0% | |
| ACGTAAAATGCTTTAACCAT+GGG | - | chr5_4:10747207-10747226 | None:intergenic | 30.0% | |
| TACGTAAAATGCTTTAACCA+TGG | - | chr5_4:10747208-10747227 | None:intergenic | 30.0% | |
| TTTGCTAGCTATCACAAATA+TGG | - | chr5_4:10747332-10747351 | None:intergenic | 30.0% | |
| TAATCACCTAAGTTGTAGTT+TGG | + | chr5_4:10747419-10747438 | Msa0837020:intron | 30.0% | |
| ! | TATCAACTTGTTCCATAGTA+TGG | - | chr5_4:10747631-10747650 | None:intergenic | 30.0% |
| !!! | CAATTCAACTTTTAGAACTG+GGG | - | chr5_4:10747738-10747757 | None:intergenic | 30.0% |
| AAAATGAAACAACATACGAG+TGG | + | chr5_4:10747947-10747966 | Msa0837020:intron | 30.0% | |
| TTTGTATGGAATGATGAGTT+TGG | + | chr5_4:10748710-10748729 | Msa0837020:three_prime_UTR | 30.0% | |
| ACAAATTCTTGCAAATTCCA+TGG | + | chr5_4:10748756-10748775 | Msa0837020:three_prime_UTR | 30.0% | |
| ACCTACAGTGATGAAAAATA+TGG | - | chr5_4:10748808-10748827 | None:intergenic | 30.0% | |
| GCTCTATGAAATTGTAAAGG+TGG | - | chr5_4:10745109-10745128 | None:intergenic | 35.0% | |
| ACCGCTCTATGAAATTGTAA+AGG | - | chr5_4:10745112-10745131 | None:intergenic | 35.0% | |
| ! | AATTTGCTCAATGAGGGTTT+GGG | - | chr5_4:10745204-10745223 | None:intergenic | 35.0% |
| ! | TGGTTCAATTTGCTCAATGA+GGG | - | chr5_4:10745210-10745229 | None:intergenic | 35.0% |
| ! | TTGGTTCAATTTGCTCAATG+AGG | - | chr5_4:10745211-10745230 | None:intergenic | 35.0% |
| GAGAGAGAAAAATGAGAAGA+GGG | - | chr5_4:10745246-10745265 | None:intergenic | 35.0% | |
| AAATTCTCCCAAAATCACCA+TGG | + | chr5_4:10745269-10745288 | Msa0837020:exon | 35.0% | |
| ! | TCTTCAACCATGGTGATTTT+GGG | - | chr5_4:10745279-10745298 | None:intergenic | 35.0% |
| ! | TTCTTCAACCATGGTGATTT+TGG | - | chr5_4:10745280-10745299 | None:intergenic | 35.0% |
| ACCATAAACCACGACAAAAA+CGG | + | chr5_4:10745369-10745388 | Msa0837020:CDS | 35.0% | |
| ACCAAAATCATTCTCCTTCA+TGG | - | chr5_4:10745505-10745524 | None:intergenic | 35.0% | |
| ATGCGTTGAGTTTGATCTTT+AGG | + | chr5_4:10745653-10745672 | Msa0837020:intron | 35.0% | |
| ! | TGCATGTTCTCAGTGTTTTA+TGG | + | chr5_4:10745713-10745732 | Msa0837020:intron | 35.0% |
| ! | CCAATGCTTTCGTATTTTAC+AGG | - | chr5_4:10745795-10745814 | None:intergenic | 35.0% |
| ! | CCTGTAAAATACGAAAGCAT+TGG | + | chr5_4:10745792-10745811 | Msa0837020:intron | 35.0% |
| !!! | TTTTTGGCTAATTCTGTGCT+AGG | + | chr5_4:10746070-10746089 | Msa0837020:intron | 35.0% |
| AAATAGGTCAGGGGTTATTA+TGG | + | chr5_4:10746258-10746277 | Msa0837020:intron | 35.0% | |
| AACATTCAAACGTTCTTGTG+TGG | - | chr5_4:10746458-10746477 | None:intergenic | 35.0% | |
| GTCCACACATACTACAAATA+TGG | + | chr5_4:10746567-10746586 | Msa0837020:CDS | 35.0% | |
| ! | TTTTGCAAGCAATATTGAGC+AGG | + | chr5_4:10746728-10746747 | Msa0837020:CDS | 35.0% |
| TATTTGACATGATGAGTGGA+AGG | - | chr5_4:10746911-10746930 | None:intergenic | 35.0% | |
| CAACTGTTTACTCAAGACAT+AGG | + | chr5_4:10747030-10747049 | Msa0837020:intron | 35.0% | |
| GTTTACTCAAGACATAGGAT+AGG | + | chr5_4:10747035-10747054 | Msa0837020:intron | 35.0% | |
| AAAAACACCTCCTGAATTGT+TGG | + | chr5_4:10747269-10747288 | Msa0837020:intron | 35.0% | |
| AAAACACCTCCTGAATTGTT+GGG | + | chr5_4:10747270-10747289 | Msa0837020:intron | 35.0% | |
| TTGAAATGTGAAACAGTGTC+CGG | + | chr5_4:10747473-10747492 | Msa0837020:intron | 35.0% | |
| !! | GACAGATTGCTTTTCAACAA+TGG | - | chr5_4:10747609-10747628 | None:intergenic | 35.0% |
| AAAGCAATCTGTCCATACTA+TGG | + | chr5_4:10747616-10747635 | Msa0837020:CDS | 35.0% | |
| AGAGATGTTTCAAAATCCTC+TGG | - | chr5_4:10747780-10747799 | None:intergenic | 35.0% | |
| ! | TCAGCAATGTTTCTATCATC+TGG | - | chr5_4:10747849-10747868 | None:intergenic | 35.0% |
| CACAATTGGTCATCCTAAAT+TGG | - | chr5_4:10748008-10748027 | None:intergenic | 35.0% | |
| TTTCCGTATATGCTTGTGTT+TGG | + | chr5_4:10748069-10748088 | Msa0837020:CDS | 35.0% | |
| ! | CGCAATTGAGTTATTAGTCT+CGG | - | chr5_4:10748212-10748231 | None:intergenic | 35.0% |
| CGAGACTAATAACTCAATTG+CGG | + | chr5_4:10748210-10748229 | Msa0837020:CDS | 35.0% | |
| !! | TCTCAGCGAGAATTGATTTT+GGG | - | chr5_4:10748401-10748420 | None:intergenic | 35.0% |
| !! | ATCTCAGCGAGAATTGATTT+TGG | - | chr5_4:10748402-10748421 | None:intergenic | 35.0% |
| TTTGGCGACTCTTTGAATTA+TGG | + | chr5_4:10748728-10748747 | Msa0837020:three_prime_UTR | 35.0% | |
| CGACTCTTTGAATTATGGAT+AGG | + | chr5_4:10748733-10748752 | Msa0837020:three_prime_UTR | 35.0% | |
| ! | GCCATATTTTTCATCACTGT+AGG | + | chr5_4:10748804-10748823 | Msa0837020:three_prime_UTR | 35.0% |
| TGTAGGTTTATGTGTAGCTA+AGG | + | chr5_4:10748821-10748840 | Msa0837020:three_prime_UTR | 35.0% | |
| !! | ATGCATGTTCCTTTAAGGTT+TGG | + | chr5_4:10748935-10748954 | Msa0837020:three_prime_UTR | 35.0% |
| !! | TCAATGAGGGTTTGGGTTTT+GGG | - | chr5_4:10745197-10745216 | None:intergenic | 40.0% |
| ! | CAATTTGCTCAATGAGGGTT+TGG | - | chr5_4:10745205-10745224 | None:intergenic | 40.0% |
| CGAGAGAGAAAAATGAGAAG+AGG | - | chr5_4:10745247-10745266 | None:intergenic | 40.0% | |
| AGTTGGAGTTTCTTCAACCA+TGG | - | chr5_4:10745289-10745308 | None:intergenic | 40.0% | |
| !! | TCCGTTTTTGTCGTGGTTTA+TGG | - | chr5_4:10745373-10745392 | None:intergenic | 40.0% |
| ! | GCCATGAAGGAGAATGATTT+TGG | + | chr5_4:10745501-10745520 | Msa0837020:CDS | 40.0% |
| TTGAGATCAGGTTCAATTCG+TGG | + | chr5_4:10745553-10745572 | Msa0837020:intron | 40.0% | |
| !!! | CCTACGTTTTGTTTTGATGC+GGG | - | chr5_4:10745820-10745839 | None:intergenic | 40.0% |
| !!! | CCCTACGTTTTGTTTTGATG+CGG | - | chr5_4:10745821-10745840 | None:intergenic | 40.0% |
| CCGCATCAAAACAAAACGTA+GGG | + | chr5_4:10745818-10745837 | Msa0837020:intron | 40.0% | |
| AGAATGAAATCTCTGCTGGT+GGG | - | chr5_4:10746387-10746406 | None:intergenic | 40.0% | |
| AAGAATGAAATCTCTGCTGG+TGG | - | chr5_4:10746388-10746407 | None:intergenic | 40.0% | |
| GACAAGAATGAAATCTCTGC+TGG | - | chr5_4:10746391-10746410 | None:intergenic | 40.0% | |
| TGTCAACCTGATGCTCTTAT+AGG | + | chr5_4:10746407-10746426 | Msa0837020:intron | 40.0% | |
| ATCAACAGAGTTGCCCATTA+TGG | + | chr5_4:10746525-10746544 | Msa0837020:intron | 40.0% | |
| TGGTTGTGCACTGTTATACA+AGG | + | chr5_4:10746587-10746606 | Msa0837020:CDS | 40.0% | |
| ATTGCTTGCAAAAGATGCAG+TGG | - | chr5_4:10746721-10746740 | None:intergenic | 40.0% | |
| ! | ATGTTTTCTGTGCCCTAATC+AGG | + | chr5_4:10747073-10747092 | Msa0837020:intron | 40.0% |
| ! | TGTTTTCTGTGCCCTAATCA+GGG | + | chr5_4:10747074-10747093 | Msa0837020:intron | 40.0% |
| ATGCACACGTATCAAAGAGA+AGG | - | chr5_4:10747108-10747127 | None:intergenic | 40.0% | |
| CTTTGATACGTGTGCATGAA+TGG | + | chr5_4:10747111-10747130 | Msa0837020:intron | 40.0% | |
| TGCATGAATGGCACTTATTG+TGG | + | chr5_4:10747123-10747142 | Msa0837020:intron | 40.0% | |
| GCATGAATGGCACTTATTGT+GGG | + | chr5_4:10747124-10747143 | Msa0837020:intron | 40.0% | |
| CATGAATGGCACTTATTGTG+GGG | + | chr5_4:10747125-10747144 | Msa0837020:intron | 40.0% | |
| TTCTCGCCAAACTACAACTT+AGG | - | chr5_4:10747428-10747447 | None:intergenic | 40.0% | |
| GGATAGTGATACTGAAGAGT+TGG | + | chr5_4:10747520-10747539 | Msa0837020:CDS | 40.0% | |
| CCTCCAAACACAAGCATATA+CGG | - | chr5_4:10748075-10748094 | None:intergenic | 40.0% | |
| AGCCTTCTCCAAATAAGCAA+CGG | - | chr5_4:10748119-10748138 | None:intergenic | 40.0% | |
| GAAGGCTACATCTGTTTGTA+AGG | + | chr5_4:10748132-10748151 | Msa0837020:CDS | 40.0% | |
| CTCAAGTGAACTGGAAAAGA+AGG | + | chr5_4:10748267-10748286 | Msa0837020:CDS | 40.0% | |
| ! | TCACACATCTTGGTGTAGTA+GGG | + | chr5_4:10748562-10748581 | Msa0837020:CDS | 40.0% |
| !! | TCTTCGGTTGTTTCTAATGC+TGG | - | chr5_4:10748645-10748664 | None:intergenic | 40.0% |
| ACAACCGAAGAGAAAAGTGA+TGG | + | chr5_4:10748654-10748673 | Msa0837020:CDS | 40.0% | |
| TGGCAACGCATGATTTATAC+TGG | + | chr5_4:10748677-10748696 | Msa0837020:exon | 40.0% | |
| ! | CTGGTCTCAGTTCTTTTGTA+TGG | + | chr5_4:10748696-10748715 | Msa0837020:three_prime_UTR | 40.0% |
| ! | TTCCATGGTTGACTGTTTTC+AGG | + | chr5_4:10748771-10748790 | Msa0837020:three_prime_UTR | 40.0% |
| TTCCTGAAAACAGTCAACCA+TGG | - | chr5_4:10748776-10748795 | None:intergenic | 40.0% | |
| AATTCAGCGCCAAACCTTAA+AGG | - | chr5_4:10748947-10748966 | None:intergenic | 40.0% | |
| ! | TTAAGGTTTGGCGCTGAATT+AGG | + | chr5_4:10748947-10748966 | Msa0837020:three_prime_UTR | 40.0% |
| !! | CAATGAGGGTTTGGGTTTTG+GGG | - | chr5_4:10745196-10745215 | None:intergenic | 45.0% |
| !! | CTCAATGAGGGTTTGGGTTT+TGG | - | chr5_4:10745198-10745217 | None:intergenic | 45.0% |
| GCTGATGAGCTGATGGAAAA+GGG | + | chr5_4:10745471-10745490 | Msa0837020:CDS | 45.0% | |
| GCTGATGGAAAAGGGAAACA+AGG | + | chr5_4:10745479-10745498 | Msa0837020:CDS | 45.0% | |
| AAAGGGAAACAAGGCCATGA+AGG | + | chr5_4:10745488-10745507 | Msa0837020:CDS | 45.0% | |
| TGAACCTGATCTCAAGAGCA+CGG | - | chr5_4:10745548-10745567 | None:intergenic | 45.0% | |
| CCCGCATCAAAACAAAACGT+AGG | + | chr5_4:10745817-10745836 | Msa0837020:intron | 45.0% | |
| AACAAAACGTAGGGCCTGTT+TGG | + | chr5_4:10745827-10745846 | Msa0837020:intron | 45.0% | |
| TAGGGCCTGTTTGGATTGTT+TGG | + | chr5_4:10745836-10745855 | Msa0837020:intron | 45.0% | |
| AGGGCCTGTTTGGATTGTTT+GGG | + | chr5_4:10745837-10745856 | Msa0837020:intron | 45.0% | |
| GTCTCCCAAACAATCCAAAC+AGG | - | chr5_4:10745844-10745863 | None:intergenic | 45.0% | |
| GGCTAATTCTGTGCTAGGAA+TGG | + | chr5_4:10746075-10746094 | Msa0837020:intron | 45.0% | |
| AGGTCAGGGGTTATTATGGA+TGG | + | chr5_4:10746262-10746281 | Msa0837020:intron | 45.0% | |
| !! | ATGGGTCCTATAAGAGCATC+AGG | - | chr5_4:10746416-10746435 | None:intergenic | 45.0% |
| GGGAGCAAGTTCACCATAAT+GGG | - | chr5_4:10746541-10746560 | None:intergenic | 45.0% | |
| TAGTATGTGTGGACACACTC+GGG | - | chr5_4:10746561-10746580 | None:intergenic | 45.0% | |
| GTAGTATGTGTGGACACACT+CGG | - | chr5_4:10746562-10746581 | None:intergenic | 45.0% | |
| TGCACTGTTATACAAGGCTC+AGG | + | chr5_4:10746593-10746612 | Msa0837020:CDS | 45.0% | |
| ACTGTTATACAAGGCTCAGG+AGG | + | chr5_4:10746596-10746615 | Msa0837020:CDS | 45.0% | |
| CTTCACAGGTCCATCTTTGT+CGG | - | chr5_4:10746676-10746695 | None:intergenic | 45.0% | |
| GACAAAGATGGACCTGTGAA+GGG | + | chr5_4:10746675-10746694 | Msa0837020:CDS | 45.0% | |
| AAACAACCAGGAGTCAGAAG+TGG | + | chr5_4:10746761-10746780 | Msa0837020:CDS | 45.0% | |
| CATTATCCACTTCTGACTCC+TGG | - | chr5_4:10746770-10746789 | None:intergenic | 45.0% | |
| CAGGAGTCAGAAGTGGATAA+TGG | + | chr5_4:10746768-10746787 | Msa0837020:CDS | 45.0% | |
| TCTACTCCCAACAATTCAGG+AGG | - | chr5_4:10747279-10747298 | None:intergenic | 45.0% | |
| GTGTCTACTCCCAACAATTC+AGG | - | chr5_4:10747282-10747301 | None:intergenic | 45.0% | |
| ATCTTCCTGGTCGTTCTTAC+CGG | - | chr5_4:10747495-10747514 | None:intergenic | 45.0% | |
| CACTATCCTCATCATCTTCC+TGG | - | chr5_4:10747508-10747527 | None:intergenic | 45.0% | |
| GATACTGAAGAGTTGGCAGA+AGG | + | chr5_4:10747527-10747546 | Msa0837020:CDS | 45.0% | |
| ! | GCATTTTCCATGCCAAATCC+AGG | - | chr5_4:10747571-10747590 | None:intergenic | 45.0% |
| AACATTGGCAGATGTTGCTC+TGG | + | chr5_4:10747658-10747677 | Msa0837020:CDS | 45.0% | |
| AGAACTGGGGTAGAGAGAAT+TGG | - | chr5_4:10747725-10747744 | None:intergenic | 45.0% | |
| !!! | CTGGGATCTGTTTTTTCCAG+AGG | + | chr5_4:10747761-10747780 | Msa0837020:intron | 45.0% |
| ATCTCTCTCTGACTACCAGA+AGG | + | chr5_4:10747794-10747813 | Msa0837020:CDS | 45.0% | |
| TCTATCCATCCTAGAACAGC+TGG | + | chr5_4:10747818-10747837 | Msa0837020:CDS | 45.0% | |
| !! | TTCAACCAGCTGTTCTAGGA+TGG | - | chr5_4:10747826-10747845 | None:intergenic | 45.0% |
| ! | TAGCAGTGGAAGAGCACAAT+TGG | - | chr5_4:10748022-10748041 | None:intergenic | 45.0% |
| AAGTTAAGGCTGTCTAGCAG+TGG | - | chr5_4:10748036-10748055 | None:intergenic | 45.0% | |
| CCGTATATGCTTGTGTTTGG+AGG | + | chr5_4:10748072-10748091 | Msa0837020:CDS | 45.0% | |
| ! | GGAGGTTAGTTCAAAACCTG+AGG | + | chr5_4:10748090-10748109 | Msa0837020:CDS | 45.0% |
| AAATAAGCAACGGCTTCCTC+AGG | - | chr5_4:10748109-10748128 | None:intergenic | 45.0% | |
| TGAGGAAGCCGTTGCTTATT+TGG | + | chr5_4:10748108-10748127 | Msa0837020:CDS | 45.0% | |
| AGCCGTTGCTTATTTGGAGA+AGG | + | chr5_4:10748114-10748133 | Msa0837020:CDS | 45.0% | |
| GCAGAAATTGAAACTCTCGC+AGG | + | chr5_4:10748241-10748260 | Msa0837020:CDS | 45.0% | |
| TGAGATTCTAGCATCTGCCA+AGG | + | chr5_4:10748416-10748435 | Msa0837020:CDS | 45.0% | |
| ATTGGTGTGAGCGGTTGAAA+TGG | - | chr5_4:10748529-10748548 | None:intergenic | 45.0% | |
| ATTTCAACCGCTCACACCAA+TGG | + | chr5_4:10748528-10748547 | Msa0837020:CDS | 45.0% | |
| ! | GTCACACATCTTGGTGTAGT+AGG | + | chr5_4:10748561-10748580 | Msa0837020:CDS | 45.0% |
| ACCGAAGAGAAAAGTGATGG+TGG | + | chr5_4:10748657-10748676 | Msa0837020:CDS | 45.0% | |
| !! | GCCACCATCACTTTTCTCTT+CGG | - | chr5_4:10748661-10748680 | None:intergenic | 45.0% |
| ACGGAAGTCTCAGATGCAGT+TGG | - | chr5_4:10745306-10745325 | None:intergenic | 50.0% | |
| !! | GGTTGGTTGAGGCATTGTGA+CGG | - | chr5_4:10745325-10745344 | None:intergenic | 50.0% |
| GTGGTTTATGGTTCCGTCGA+CGG | - | chr5_4:10745361-10745380 | None:intergenic | 50.0% | |
| GGCTGATGAGCTGATGGAAA+AGG | + | chr5_4:10745470-10745489 | Msa0837020:CDS | 50.0% | |
| ATAGCCGTGCTCTTGAGATC+AGG | + | chr5_4:10745541-10745560 | Msa0837020:CDS | 50.0% | |
| CTATAGTGCATGGCCCAGTT+TGG | - | chr5_4:10746033-10746052 | None:intergenic | 50.0% | |
| CGGGAGCAAGTTCACCATAA+TGG | - | chr5_4:10746542-10746561 | None:intergenic | 50.0% | |
| TTCTTGGGAACAGCACCCAA+AGG | - | chr5_4:10746630-10746649 | None:intergenic | 50.0% | |
| CGACAAAGATGGACCTGTGA+AGG | + | chr5_4:10746674-10746693 | Msa0837020:CDS | 50.0% | |
| GCATTCATAGCACCCTTCAC+AGG | - | chr5_4:10746690-10746709 | None:intergenic | 50.0% | |
| GGACGTGACTTCAAACAACC+AGG | + | chr5_4:10746749-10746768 | Msa0837020:CDS | 50.0% | |
| ! | CATGGGCTTTTTGTACCCCA+CGG | - | chr5_4:10747190-10747209 | None:intergenic | 50.0% |
| GAACGACCAGGAAGATGATG+AGG | + | chr5_4:10747499-10747518 | Msa0837020:CDS | 50.0% | |
| TGATGAAGACGAGTCTGACC+TGG | + | chr5_4:10747550-10747569 | Msa0837020:CDS | 50.0% | |
| AGACGAGTCTGACCTGGATT+TGG | + | chr5_4:10747556-10747575 | Msa0837020:CDS | 50.0% | |
| AGTCTGACCTGGATTTGGCA+TGG | + | chr5_4:10747561-10747580 | Msa0837020:CDS | 50.0% | |
| !! | GCAGATGTTGCTCTGGAAAG+AGG | + | chr5_4:10747665-10747684 | Msa0837020:CDS | 50.0% |
| CTAGGATGGATAGAGCCTTC+TGG | - | chr5_4:10747812-10747831 | None:intergenic | 50.0% | |
| CTGGTTCAACCAGCTGTTCT+AGG | - | chr5_4:10747830-10747849 | None:intergenic | 50.0% | |
| ATTCTAGCATCTGCCAAGGC+AGG | + | chr5_4:10748420-10748439 | Msa0837020:CDS | 50.0% | |
| GAGCTCACTCTTGCTAGAGA+TGG | - | chr5_4:10748459-10748478 | None:intergenic | 50.0% | |
| AAGAGTGAGCTCCTCACAGT+TGG | + | chr5_4:10748467-10748486 | Msa0837020:CDS | 50.0% | |
| GTTCTCTGTAGCCAACTGTG+AGG | - | chr5_4:10748481-10748500 | None:intergenic | 50.0% | |
| TTGGCTACAGAGAACAGCAG+TGG | + | chr5_4:10748486-10748505 | Msa0837020:CDS | 50.0% | |
| GTGTGAGCGGTTGAAATGGT+TGG | - | chr5_4:10748525-10748544 | None:intergenic | 50.0% | |
| AGCAGATCCATTGGTGTGAG+CGG | - | chr5_4:10748538-10748557 | None:intergenic | 50.0% | |
| TGTGACTCCAGCAGATCCAT+TGG | - | chr5_4:10748547-10748566 | None:intergenic | 50.0% | |
| TCTGCTGGAGTCACACATCT+TGG | + | chr5_4:10748552-10748571 | Msa0837020:CDS | 50.0% | |
| ! | CATCTTGGTGTAGTAGGGAG+AGG | + | chr5_4:10748567-10748586 | Msa0837020:CDS | 50.0% |
| ! | GTGACAGGTTCGGTTGGTTG+AGG | - | chr5_4:10745336-10745355 | None:intergenic | 55.0% |
| !! | CGGTGGTTCCGTTTTTGTCG+TGG | - | chr5_4:10745380-10745399 | None:intergenic | 55.0% |
| CGGTCAGAAGTCTCTGGACA+TGG | + | chr5_4:10745449-10745468 | Msa0837020:CDS | 55.0% | |
| GGACATGGCTGATGAGCTGA+TGG | + | chr5_4:10745464-10745483 | Msa0837020:CDS | 55.0% | |
| TCAGGAGGAAGCCGATCCTT+TGG | + | chr5_4:10746611-10746630 | Msa0837020:CDS | 55.0% | |
| CAGGAGGAAGCCGATCCTTT+GGG | + | chr5_4:10746612-10746631 | Msa0837020:CDS | 55.0% | |
| GGGAACAGCACCCAAAGGAT+CGG | - | chr5_4:10746625-10746644 | None:intergenic | 55.0% | |
| TGCTGTTCCCAAGAAGCAGG+AGG | + | chr5_4:10746635-10746654 | Msa0837020:CDS | 55.0% | |
| GGAGACTCCTCCTGCTTCTT+GGG | - | chr5_4:10746645-10746664 | None:intergenic | 55.0% | |
| TGGAGACTCCTCCTGCTTCT+TGG | - | chr5_4:10746646-10746665 | None:intergenic | 55.0% | |
| AAGCAGGAGGAGTCTCCACA+TGG | + | chr5_4:10746648-10746667 | Msa0837020:CDS | 55.0% | |
| ACTCGAGTCTGTGACGTGTG+CGG | + | chr5_4:10747157-10747176 | Msa0837020:intron | 55.0% | |
| CGTGGGGTACAAAAAGCCCA+TGG | + | chr5_4:10747188-10747207 | Msa0837020:intron | 55.0% | |
| AGTGTCCGGTAAGAACGACC+AGG | + | chr5_4:10747487-10747506 | Msa0837020:intron | 55.0% | |
| CGCAGGTCTCTCAAGTGAAC+TGG | + | chr5_4:10748258-10748277 | Msa0837020:CDS | 55.0% | |
| TTCCTTTCCACTGCCTGCCT+TGG | - | chr5_4:10748436-10748455 | None:intergenic | 55.0% | |
| GCTCACACCAATGGATCTGC+TGG | + | chr5_4:10748537-10748556 | Msa0837020:CDS | 55.0% | |
| GCGATCATCAAATGCCAGCG+TGG | + | chr5_4:10748596-10748615 | Msa0837020:CDS | 55.0% | |
| AATGCTTGCTTCTGCCACGC+TGG | - | chr5_4:10748613-10748632 | None:intergenic | 55.0% | |
| ! | ACGGCTGTGACAGGTTCGGT+TGG | - | chr5_4:10745342-10745361 | None:intergenic | 60.0% |
| GTCGACGGCTGTGACAGGTT+CGG | - | chr5_4:10745346-10745365 | None:intergenic | 60.0% | |
| GAACCTGTCACAGCCGTCGA+CGG | + | chr5_4:10745345-10745364 | Msa0837020:CDS | 60.0% | |
| ! | GGAAGTTGCGGCGGATTCCA+CGG | - | chr5_4:10745412-10745431 | None:intergenic | 60.0% |
| CAGAGACTTCTGACCGTCGC+TGG | - | chr5_4:10745445-10745464 | None:intergenic | 60.0% | |
| CAGCGACGGTCAGAAGTCTC+TGG | + | chr5_4:10745443-10745462 | Msa0837020:CDS | 60.0% | |
| !! | GGGTGCTGTTCCCAAGAAGC+AGG | + | chr5_4:10746632-10746651 | Msa0837020:CDS | 60.0% |
| CCATCTTTGTCGGCGCCATG+TGG | - | chr5_4:10746666-10746685 | None:intergenic | 60.0% | |
| !! | CCACATGGCGCCGACAAAGA+TGG | + | chr5_4:10746663-10746682 | Msa0837020:CDS | 60.0% |
| ! | ACGTGTGCGGACTAAGTCCG+TGG | + | chr5_4:10747170-10747189 | Msa0837020:intron | 60.0% |
| ! | CGTGTGCGGACTAAGTCCGT+GGG | + | chr5_4:10747171-10747190 | Msa0837020:intron | 60.0% |
| ! | GTGTGCGGACTAAGTCCGTG+GGG | + | chr5_4:10747172-10747191 | Msa0837020:intron | 60.0% |
| TGCCAAGGCAGGCAGTGGAA+AGG | + | chr5_4:10748431-10748450 | Msa0837020:CDS | 60.0% | |
| GTTCCGTCGACGGCTGTGAC+AGG | - | chr5_4:10745351-10745370 | None:intergenic | 65.0% | |
| GGATTCCACGGCGGGGTTGA+CGG | - | chr5_4:10745400-10745419 | None:intergenic | 65.0% | |
| ! | AGTTGCGGCGGATTCCACGG+CGG | - | chr5_4:10745409-10745428 | None:intergenic | 65.0% |
| ATCCGCCGCAACTTCCGCTC+CGG | + | chr5_4:10745416-10745435 | Msa0837020:CDS | 65.0% | |
| TTCTGACCGTCGCTGGACGC+CGG | - | chr5_4:10745438-10745457 | None:intergenic | 65.0% | |
| GCATCTGCCAAGGCAGGCAG+TGG | + | chr5_4:10748426-10748445 | Msa0837020:CDS | 65.0% | |
| AACCACCGTCAACCCCGCCG+TGG | + | chr5_4:10745392-10745411 | Msa0837020:CDS | 70.0% | |
| TTCCACGGCGGGGTTGACGG+TGG | - | chr5_4:10745397-10745416 | None:intergenic | 70.0% | |
| ! | TTGCGGCGGATTCCACGGCG+GGG | - | chr5_4:10745407-10745426 | None:intergenic | 70.0% |
| ! | GTTGCGGCGGATTCCACGGC+GGG | - | chr5_4:10745408-10745427 | None:intergenic | 70.0% |
| GGACGCCGGAGCGGAAGTTG+CGG | - | chr5_4:10745424-10745443 | None:intergenic | 70.0% | |
| CGCCGGAGCGGAAGTTGCGG+CGG | - | chr5_4:10745421-10745440 | None:intergenic | 75.0% | |
| TCCGCTCCGGCGTCCAGCGA+CGG | + | chr5_4:10745429-10745448 | Msa0837020:CDS | 75.0% | |
| ACCGTCGCTGGACGCCGGAG+CGG | - | chr5_4:10745433-10745452 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10745099 | 10748997 | 10745099 | ID=Msa0837020;Name=Msa0837020 |
| chr5_4 | mRNA | 10745099 | 10748997 | 10745099 | ID=Msa0837020-mRNA-1;Parent=Msa0837020;Name=Msa0837020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=189|0.8|0.66|1|1|1|6|308|471 |
| chr5_4 | exon | 10745099 | 10745562 | 10745099 | ID=Msa0837020-mRNA-1:exon:4732;Parent=Msa0837020-mRNA-1 |
| chr5_4 | exon | 10746533 | 10746789 | 10746533 | ID=Msa0837020-mRNA-1:exon:4733;Parent=Msa0837020-mRNA-1 |
| chr5_4 | exon | 10747489 | 10747686 | 10747489 | ID=Msa0837020-mRNA-1:exon:4734;Parent=Msa0837020-mRNA-1 |
| chr5_4 | exon | 10747781 | 10747899 | 10747781 | ID=Msa0837020-mRNA-1:exon:4735;Parent=Msa0837020-mRNA-1 |
| chr5_4 | exon | 10748043 | 10748288 | 10748043 | ID=Msa0837020-mRNA-1:exon:4736;Parent=Msa0837020-mRNA-1 |
| chr5_4 | exon | 10748369 | 10748997 | 10748369 | ID=Msa0837020-mRNA-1:exon:4737;Parent=Msa0837020-mRNA-1 |
| chr5_4 | five_prime_UTR | 10745099 | 10745287 | 10745099 | ID=Msa0837020-mRNA-1:five_prime_utr;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10745288 | 10745562 | 10745288 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10746533 | 10746789 | 10746533 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10747489 | 10747686 | 10747489 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10747781 | 10747899 | 10747781 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10748043 | 10748288 | 10748043 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | CDS | 10748369 | 10748689 | 10748369 | ID=Msa0837020-mRNA-1:cds;Parent=Msa0837020-mRNA-1 |
| chr5_4 | three_prime_UTR | 10748690 | 10748997 | 10748690 | ID=Msa0837020-mRNA-1:three_prime_utr;Parent=Msa0837020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
