AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210810 MtrunA17_Chr4g0059621 61.538 91 1 1 1 91 1 57 2.46e-28 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGATGAAGGCCACATTCC+TGG 0.321908 8_1:+70034810 Msa1210810:CDS
TTTGTGTTGTGAATCGAAAA+TGG 0.327426 8_1:+70033310 Msa1210810:exon
CTACCAGATTCCGCTCTTCC+AGG 0.342832 8_1:-70034828 Msa1210820:CDS
CTTATATGCCGAAGACTTGA+TGG 0.346929 8_1:+70035373 Msa1210810:three_prime_UTR
ATGGGAATAGCTGGTAAGAT+TGG 0.362277 8_1:+70033329 Msa1210810:CDS
TGGGAATAGCTGGTAAGATT+GGG 0.374359 8_1:+70033330 Msa1210810:CDS
TCATGATGGTCATTTAGTTA+TGG 0.392302 8_1:-70035272 Msa1210820:intron
GATTGGGGATTACACTTTCA+AGG 0.398797 8_1:+70033346 Msa1210810:CDS
AGCACGAAGGGGTGGGATAT+CGG 0.405578 8_1:+70034791 Msa1210810:CDS
GGAAAACATGTGCTTCTGAC+TGG 0.421568 8_1:+70034754 Msa1210810:CDS
TAGTTTGTGAAGCTCATTGA+TGG 0.425613 8_1:+70035481 Msa1210810:three_prime_UTR
AGAAAATTCCATCAAGTCTT+CGG 0.429917 8_1:-70035381 Msa1210820:intron
AAGGCCTTTGTAAACATTAA+CGG 0.435862 8_1:-70033420 None:intergenic
TTGTGTTGTGAATCGAAAAT+GGG 0.473456 8_1:+70033311 Msa1210810:exon
ATTCCTGGAAGAGCGGAATC+TGG 0.476413 8_1:+70034825 Msa1210810:CDS
CGAGAGAGTATAACTTCGTA+AGG 0.492734 8_1:+70033259 None:intergenic
GAATCGAAAATGGGAATAGC+TGG 0.500649 8_1:+70033320 Msa1210810:exon
ATGAGCTTCACAAACTAGAC+AGG 0.501110 8_1:-70035475 Msa1210820:intron
ATGTTTACAAAGGCCTTGCT+TGG 0.507155 8_1:+70033426 Msa1210810:CDS
TTCGATTCACAACACAAACT+AGG 0.520675 8_1:-70033305 None:intergenic
AAACAGATTATTACTCATGA+TGG 0.524302 8_1:-70035286 Msa1210820:intron
AAGGCTTTCACAGCAACTCT+CGG 0.525587 8_1:+70033365 Msa1210810:CDS
CTCAAGAGGATAAGCACGAA+GGG 0.539467 8_1:+70034779 Msa1210810:CDS
GGGAATAGCTGGTAAGATTG+GGG 0.543838 8_1:+70033331 Msa1210810:CDS
AAACTTGATGTGGAGGATGC+TGG 0.558872 8_1:+70035138 Msa1210810:CDS
AACATTAACGGAGAAAGTGC+CGG 0.561590 8_1:-70033408 None:intergenic
TTCTCCGTTAATGTTTACAA+AGG 0.561828 8_1:+70033416 Msa1210810:CDS
TTCGTAAGGGTGTGTGAGCG+TGG 0.563753 8_1:+70033273 Msa1210810:five_prime_UTR
GAAAACATGTGCTTCTGACT+GGG 0.569142 8_1:+70034755 Msa1210810:CDS
AGAGGATAAGCACGAAGGGG+TGG 0.569221 8_1:+70034783 Msa1210810:CDS
GAGGATAAGCACGAAGGGGT+GGG 0.571327 8_1:+70034784 Msa1210810:CDS
AGGGGTGGGATATCGGATGA+AGG 0.573010 8_1:+70034798 Msa1210810:CDS
CTCTTTGCAGAAACTTGATG+TGG 0.577042 8_1:+70035128 Msa1210810:intron
ATTGAGCTTTGTGCCAAGCA+AGG 0.577529 8_1:-70033439 None:intergenic
ATCACTACTATCTACCTCAC+CGG 0.580585 8_1:+70033389 Msa1210810:CDS
ATTCCGCTCTTCCAGGAATG+TGG 0.580842 8_1:-70034821 Msa1210820:CDS
TTTGCAGAAACTTGATGTGG+AGG 0.608728 8_1:+70035131 Msa1210810:intron
TGTGGAGGATGCTGGTGAGA+AGG 0.614238 8_1:+70035146 Msa1210810:CDS
GACTTGTAATTGAAGAAAGT+AGG 0.615746 8_1:-70035191 Msa1210820:intron
GCTTCTGACTGGGTCTCAAG+AGG 0.631693 8_1:+70034765 Msa1210810:CDS
TAACGGAGAAAGTGCCGGTG+AGG 0.652823 8_1:-70033403 None:intergenic
TGAGCTTCACAAACTAGACA+GGG 0.673877 8_1:-70035474 Msa1210820:intron
AGGCCACATTCCTGGAAGAG+CGG 0.674681 8_1:+70034818 Msa1210810:CDS
GCATGTGGTATACAGTAGAG+TGG 0.676264 8_1:+70035413 Msa1210810:three_prime_UTR
TCTCAAGAGGATAAGCACGA+AGG 0.683711 8_1:+70034778 Msa1210810:CDS
GAGAGAGTATAACTTCGTAA+GGG 0.686879 8_1:+70033260 None:intergenic
TCAAGAGGATAAGCACGAAG+GGG 0.708603 8_1:+70034780 Msa1210810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTACTAAATATGAATTAAT+TGG - chr8_1:70033540-70033559 None:intergenic 15.0%
!! AGCTATAATATATTTATAGA+AGG + chr8_1:70034167-70034186 Msa1210810:intron 15.0%
!! AGTACTAAATATGAATTAAT+TGG - chr8_1:70033540-70033559 None:intergenic 15.0%
!! AGCTATAATATATTTATAGA+AGG + chr8_1:70034167-70034186 Msa1210810:intron 15.0%
!! GTATAAAATATGAATGATCA+AGG - chr8_1:70033651-70033670 None:intergenic 20.0%
!! ACAATTAATTGTTCAATAGT+TGG + chr8_1:70033669-70033688 Msa1210810:intron 20.0%
!! CAATTAATTGTTCAATAGTT+GGG + chr8_1:70033670-70033689 Msa1210810:intron 20.0%
!! AATTAATTGTTCAATAGTTG+GGG + chr8_1:70033671-70033690 Msa1210810:intron 20.0%
!!! TTTTCTCTTTTATTCAACAT+GGG - chr8_1:70034064-70034083 None:intergenic 20.0%
!!! CTGATAATTTTTAACTTGAT+TGG + chr8_1:70035248-70035267 Msa1210810:three_prime_UTR 20.0%
!! GTATAAAATATGAATGATCA+AGG - chr8_1:70033651-70033670 None:intergenic 20.0%
!! ACAATTAATTGTTCAATAGT+TGG + chr8_1:70033669-70033688 Msa1210810:intron 20.0%
!! CAATTAATTGTTCAATAGTT+GGG + chr8_1:70033670-70033689 Msa1210810:intron 20.0%
!! AATTAATTGTTCAATAGTTG+GGG + chr8_1:70033671-70033690 Msa1210810:intron 20.0%
!!! TTTTCTCTTTTATTCAACAT+GGG - chr8_1:70034064-70034083 None:intergenic 20.0%
!!! CTGATAATTTTTAACTTGAT+TGG + chr8_1:70035248-70035267 Msa1210810:three_prime_UTR 20.0%
! GAAGATTGAAACAAAGTAAT+TGG - chr8_1:70033511-70033530 None:intergenic 25.0%
!! TGTAGAATTGTTACTTGATT+TGG + chr8_1:70033607-70033626 Msa1210810:intron 25.0%
!! ATGTCATAAACTGATTTCAT+AGG - chr8_1:70033700-70033719 None:intergenic 25.0%
!! CTTTTCTCTTTTATTCAACA+TGG - chr8_1:70034065-70034084 None:intergenic 25.0%
! ACTAGGAAGGTTTATTATAT+AGG + chr8_1:70034123-70034142 Msa1210810:intron 25.0%
!!! ATTGATTTTCTCTTCAACAA+TGG + chr8_1:70034375-70034394 Msa1210810:intron 25.0%
! ATAAATAAGAGATCAAGATC+AGG + chr8_1:70034908-70034927 Msa1210810:intron 25.0%
! ATCCATAAATATTGTACTTG+CGG - chr8_1:70035017-70035036 Msa1210820:intron 25.0%
! AAACAGATTATTACTCATGA+TGG - chr8_1:70035289-70035308 Msa1210820:intron 25.0%
! GAAGATTGAAACAAAGTAAT+TGG - chr8_1:70033511-70033530 None:intergenic 25.0%
!! TGTAGAATTGTTACTTGATT+TGG + chr8_1:70033607-70033626 Msa1210810:intron 25.0%
!! ATGTCATAAACTGATTTCAT+AGG - chr8_1:70033700-70033719 None:intergenic 25.0%
!! CTTTTCTCTTTTATTCAACA+TGG - chr8_1:70034065-70034084 None:intergenic 25.0%
! ACTAGGAAGGTTTATTATAT+AGG + chr8_1:70034123-70034142 Msa1210810:intron 25.0%
!!! ATTGATTTTCTCTTCAACAA+TGG + chr8_1:70034375-70034394 Msa1210810:intron 25.0%
! ATAAATAAGAGATCAAGATC+AGG + chr8_1:70034908-70034927 Msa1210810:intron 25.0%
! ATCCATAAATATTGTACTTG+CGG - chr8_1:70035017-70035036 Msa1210820:intron 25.0%
! AAACAGATTATTACTCATGA+TGG - chr8_1:70035289-70035308 Msa1210820:intron 25.0%
TTTGTGTTGTGAATCGAAAA+TGG + chr8_1:70033310-70033329 Msa1210810:exon 30.0%
TTGTGTTGTGAATCGAAAAT+GGG + chr8_1:70033311-70033330 Msa1210810:exon 30.0%
TTCTCCGTTAATGTTTACAA+AGG + chr8_1:70033416-70033435 Msa1210810:CDS 30.0%
AAGGCCTTTGTAAACATTAA+CGG - chr8_1:70033423-70033442 None:intergenic 30.0%
! TCTCTTTTCATAAGCTATCT+TGG - chr8_1:70033760-70033779 None:intergenic 30.0%
ATAAGCTCTCTTAGAAATTG+TGG + chr8_1:70033853-70033872 Msa1210810:intron 30.0%
AATAGTCCTGGATAAGATAT+GGG - chr8_1:70033953-70033972 None:intergenic 30.0%
AAATAGTCCTGGATAAGATA+TGG - chr8_1:70033954-70033973 None:intergenic 30.0%
! ATCTAGAGTGTGGATATAAA+CGG + chr8_1:70034003-70034022 Msa1210810:intron 30.0%
! TAACAAAAATGCCTTGCTTT+TGG - chr8_1:70034331-70034350 None:intergenic 30.0%
!! AGCAGCATTTTAGAAGAATT+TGG - chr8_1:70034433-70034452 None:intergenic 30.0%
! TCTAAAATGCTGCTAAAGTA+TGG + chr8_1:70034439-70034458 Msa1210810:intron 30.0%
CTAAAATGCTGCTAAAGTAT+GGG + chr8_1:70034440-70034459 Msa1210810:intron 30.0%
GACTTGTAATTGAAGAAAGT+AGG - chr8_1:70035194-70035213 Msa1210820:intron 30.0%
TCATGATGGTCATTTAGTTA+TGG - chr8_1:70035275-70035294 Msa1210820:intron 30.0%
AGAAAATTCCATCAAGTCTT+CGG - chr8_1:70035384-70035403 Msa1210820:intron 30.0%
! TTTTCTTTTCAACATGCATG+TGG + chr8_1:70035398-70035417 Msa1210810:three_prime_UTR 30.0%
TTTGTGTTGTGAATCGAAAA+TGG + chr8_1:70033310-70033329 Msa1210810:exon 30.0%
TTGTGTTGTGAATCGAAAAT+GGG + chr8_1:70033311-70033330 Msa1210810:exon 30.0%
TTCTCCGTTAATGTTTACAA+AGG + chr8_1:70033416-70033435 Msa1210810:CDS 30.0%
AAGGCCTTTGTAAACATTAA+CGG - chr8_1:70033423-70033442 None:intergenic 30.0%
! TCTCTTTTCATAAGCTATCT+TGG - chr8_1:70033760-70033779 None:intergenic 30.0%
ATAAGCTCTCTTAGAAATTG+TGG + chr8_1:70033853-70033872 Msa1210810:intron 30.0%
AATAGTCCTGGATAAGATAT+GGG - chr8_1:70033953-70033972 None:intergenic 30.0%
AAATAGTCCTGGATAAGATA+TGG - chr8_1:70033954-70033973 None:intergenic 30.0%
! ATCTAGAGTGTGGATATAAA+CGG + chr8_1:70034003-70034022 Msa1210810:intron 30.0%
! TAACAAAAATGCCTTGCTTT+TGG - chr8_1:70034331-70034350 None:intergenic 30.0%
!! AGCAGCATTTTAGAAGAATT+TGG - chr8_1:70034433-70034452 None:intergenic 30.0%
! TCTAAAATGCTGCTAAAGTA+TGG + chr8_1:70034439-70034458 Msa1210810:intron 30.0%
CTAAAATGCTGCTAAAGTAT+GGG + chr8_1:70034440-70034459 Msa1210810:intron 30.0%
GACTTGTAATTGAAGAAAGT+AGG - chr8_1:70035194-70035213 Msa1210820:intron 30.0%
TCATGATGGTCATTTAGTTA+TGG - chr8_1:70035275-70035294 Msa1210820:intron 30.0%
AGAAAATTCCATCAAGTCTT+CGG - chr8_1:70035384-70035403 Msa1210820:intron 30.0%
! TTTTCTTTTCAACATGCATG+TGG + chr8_1:70035398-70035417 Msa1210810:three_prime_UTR 30.0%
TTCGATTCACAACACAAACT+AGG - chr8_1:70033308-70033327 None:intergenic 35.0%
CTCTCTTAGAAATTGTGGTT+GGG + chr8_1:70033858-70033877 Msa1210810:intron 35.0%
TAGCTGTTTATCCAAAAGCA+AGG + chr8_1:70034317-70034336 Msa1210810:intron 35.0%
CTCTGTGTTGGGTTAATATT+TGG + chr8_1:70034476-70034495 Msa1210810:intron 35.0%
TGTGGACGAGATATTCATTT+CGG + chr8_1:70034627-70034646 Msa1210810:intron 35.0%
TTCTGAATCTATCTCGGATA+CGG - chr8_1:70034704-70034723 None:intergenic 35.0%
AATGGCTTCTGAATCTATCT+CGG - chr8_1:70034710-70034729 None:intergenic 35.0%
AGATCAGGTTACTATCATCA+TGG + chr8_1:70034923-70034942 Msa1210810:intron 35.0%
TACATTAAAGACCTCTAGCT+TGG + chr8_1:70034957-70034976 Msa1210810:intron 35.0%
CACCGCAAGTACAATATTTA+TGG + chr8_1:70035012-70035031 Msa1210810:intron 35.0%
! TAGTTTGTGAAGCTCATTGA+TGG + chr8_1:70035481-70035500 Msa1210810:three_prime_UTR 35.0%
TTCGATTCACAACACAAACT+AGG - chr8_1:70033308-70033327 None:intergenic 35.0%
CTCTCTTAGAAATTGTGGTT+GGG + chr8_1:70033858-70033877 Msa1210810:intron 35.0%
TAGCTGTTTATCCAAAAGCA+AGG + chr8_1:70034317-70034336 Msa1210810:intron 35.0%
CTCTGTGTTGGGTTAATATT+TGG + chr8_1:70034476-70034495 Msa1210810:intron 35.0%
TGTGGACGAGATATTCATTT+CGG + chr8_1:70034627-70034646 Msa1210810:intron 35.0%
TTCTGAATCTATCTCGGATA+CGG - chr8_1:70034704-70034723 None:intergenic 35.0%
AATGGCTTCTGAATCTATCT+CGG - chr8_1:70034710-70034729 None:intergenic 35.0%
AGATCAGGTTACTATCATCA+TGG + chr8_1:70034923-70034942 Msa1210810:intron 35.0%
TACATTAAAGACCTCTAGCT+TGG + chr8_1:70034957-70034976 Msa1210810:intron 35.0%
CACCGCAAGTACAATATTTA+TGG + chr8_1:70035012-70035031 Msa1210810:intron 35.0%
! TAGTTTGTGAAGCTCATTGA+TGG + chr8_1:70035481-70035500 Msa1210810:three_prime_UTR 35.0%
GAATCGAAAATGGGAATAGC+TGG + chr8_1:70033320-70033339 Msa1210810:exon 40.0%
ATGGGAATAGCTGGTAAGAT+TGG + chr8_1:70033329-70033348 Msa1210810:CDS 40.0%
TGGGAATAGCTGGTAAGATT+GGG + chr8_1:70033330-70033349 Msa1210810:CDS 40.0%
GATTGGGGATTACACTTTCA+AGG + chr8_1:70033346-70033365 Msa1210810:CDS 40.0%
ATCACTACTATCTACCTCAC+CGG + chr8_1:70033389-70033408 Msa1210810:CDS 40.0%
! AACATTAACGGAGAAAGTGC+CGG - chr8_1:70033411-70033430 None:intergenic 40.0%
ATGTTTACAAAGGCCTTGCT+TGG + chr8_1:70033426-70033445 Msa1210810:CDS 40.0%
AAGCTATCTTGGAGAGCTTA+CGG - chr8_1:70033749-70033768 None:intergenic 40.0%
GCTCTCTTAGAAATTGTGGT+TGG + chr8_1:70033857-70033876 Msa1210810:intron 40.0%
CTTACACAATCGCACAAAAC+CGG + chr8_1:70033882-70033901 Msa1210810:intron 40.0%
TAGAGTGTGGATATAAACGG+TGG + chr8_1:70034006-70034025 Msa1210810:intron 40.0%
ACTCTCTTTCAAGATCCACT+AGG - chr8_1:70034036-70034055 None:intergenic 40.0%
AGCTTACTCTCTAAGCTACT+TGG - chr8_1:70034151-70034170 None:intergenic 40.0%
AATGCTGCTAAAGTATGGGT+TGG + chr8_1:70034444-70034463 Msa1210810:intron 40.0%
! TATTATGACAGAGGGGTATG+GGG - chr8_1:70034521-70034540 None:intergenic 40.0%
! CTATTATGACAGAGGGGTAT+GGG - chr8_1:70034522-70034541 None:intergenic 40.0%
TCTATTATGACAGAGGGGTA+TGG - chr8_1:70034523-70034542 None:intergenic 40.0%
CTACGTCTATTATGACAGAG+GGG - chr8_1:70034528-70034547 None:intergenic 40.0%
GCTACGTCTATTATGACAGA+GGG - chr8_1:70034529-70034548 None:intergenic 40.0%
AGACATGTGATGGCTTAAGT+TGG + chr8_1:70034572-70034591 Msa1210810:intron 40.0%
GACATGTGATGGCTTAAGTT+GGG + chr8_1:70034573-70034592 Msa1210810:intron 40.0%
GTGGACGAGATATTCATTTC+GGG + chr8_1:70034628-70034647 Msa1210810:intron 40.0%
TCTGAATCTATCTCGGATAC+GGG - chr8_1:70034703-70034722 None:intergenic 40.0%
! GGACTGAGTCAAAAGCATAA+TGG - chr8_1:70034728-70034747 Msa1210820:CDS 40.0%
! AAGCACATGTTTTCCATGTG+GGG - chr8_1:70034749-70034768 Msa1210820:CDS 40.0%
! GAAGCACATGTTTTCCATGT+GGG - chr8_1:70034750-70034769 Msa1210820:CDS 40.0%
!! AGAAGCACATGTTTTCCATG+TGG - chr8_1:70034751-70034770 Msa1210820:CDS 40.0%
GAAAACATGTGCTTCTGACT+GGG + chr8_1:70034755-70034774 Msa1210810:CDS 40.0%
TTAGGCTTAATCTCGGATGT+GGG - chr8_1:70034854-70034873 Msa1210820:CDS 40.0%
TTTAGGCTTAATCTCGGATG+TGG - chr8_1:70034855-70034874 Msa1210820:CDS 40.0%
!! AACGGCTTTAGGCTTAATCT+CGG - chr8_1:70034861-70034880 Msa1210820:CDS 40.0%
CACATCAAGTTTCTGCAAAG+AGG - chr8_1:70035130-70035149 Msa1210820:CDS 40.0%
CTCTTTGCAGAAACTTGATG+TGG + chr8_1:70035128-70035147 Msa1210810:intron 40.0%
TTTGCAGAAACTTGATGTGG+AGG + chr8_1:70035131-70035150 Msa1210810:intron 40.0%
CTTATATGCCGAAGACTTGA+TGG + chr8_1:70035373-70035392 Msa1210810:three_prime_UTR 40.0%
TGAGCTTCACAAACTAGACA+GGG - chr8_1:70035477-70035496 Msa1210820:intron 40.0%
ATGAGCTTCACAAACTAGAC+AGG - chr8_1:70035478-70035497 Msa1210820:intron 40.0%
GAATCGAAAATGGGAATAGC+TGG + chr8_1:70033320-70033339 Msa1210810:exon 40.0%
ATGGGAATAGCTGGTAAGAT+TGG + chr8_1:70033329-70033348 Msa1210810:CDS 40.0%
TGGGAATAGCTGGTAAGATT+GGG + chr8_1:70033330-70033349 Msa1210810:CDS 40.0%
GATTGGGGATTACACTTTCA+AGG + chr8_1:70033346-70033365 Msa1210810:CDS 40.0%
ATCACTACTATCTACCTCAC+CGG + chr8_1:70033389-70033408 Msa1210810:CDS 40.0%
! AACATTAACGGAGAAAGTGC+CGG - chr8_1:70033411-70033430 None:intergenic 40.0%
ATGTTTACAAAGGCCTTGCT+TGG + chr8_1:70033426-70033445 Msa1210810:CDS 40.0%
AAGCTATCTTGGAGAGCTTA+CGG - chr8_1:70033749-70033768 None:intergenic 40.0%
GCTCTCTTAGAAATTGTGGT+TGG + chr8_1:70033857-70033876 Msa1210810:intron 40.0%
CTTACACAATCGCACAAAAC+CGG + chr8_1:70033882-70033901 Msa1210810:intron 40.0%
TAGAGTGTGGATATAAACGG+TGG + chr8_1:70034006-70034025 Msa1210810:intron 40.0%
ACTCTCTTTCAAGATCCACT+AGG - chr8_1:70034036-70034055 None:intergenic 40.0%
AGCTTACTCTCTAAGCTACT+TGG - chr8_1:70034151-70034170 None:intergenic 40.0%
AATGCTGCTAAAGTATGGGT+TGG + chr8_1:70034444-70034463 Msa1210810:intron 40.0%
! TATTATGACAGAGGGGTATG+GGG - chr8_1:70034521-70034540 None:intergenic 40.0%
! CTATTATGACAGAGGGGTAT+GGG - chr8_1:70034522-70034541 None:intergenic 40.0%
TCTATTATGACAGAGGGGTA+TGG - chr8_1:70034523-70034542 None:intergenic 40.0%
CTACGTCTATTATGACAGAG+GGG - chr8_1:70034528-70034547 None:intergenic 40.0%
GCTACGTCTATTATGACAGA+GGG - chr8_1:70034529-70034548 None:intergenic 40.0%
AGACATGTGATGGCTTAAGT+TGG + chr8_1:70034572-70034591 Msa1210810:intron 40.0%
GACATGTGATGGCTTAAGTT+GGG + chr8_1:70034573-70034592 Msa1210810:intron 40.0%
GTGGACGAGATATTCATTTC+GGG + chr8_1:70034628-70034647 Msa1210810:intron 40.0%
TCTGAATCTATCTCGGATAC+GGG - chr8_1:70034703-70034722 None:intergenic 40.0%
! GGACTGAGTCAAAAGCATAA+TGG - chr8_1:70034728-70034747 Msa1210820:CDS 40.0%
! AAGCACATGTTTTCCATGTG+GGG - chr8_1:70034749-70034768 Msa1210820:CDS 40.0%
! GAAGCACATGTTTTCCATGT+GGG - chr8_1:70034750-70034769 Msa1210820:CDS 40.0%
!! AGAAGCACATGTTTTCCATG+TGG - chr8_1:70034751-70034770 Msa1210820:CDS 40.0%
GAAAACATGTGCTTCTGACT+GGG + chr8_1:70034755-70034774 Msa1210810:CDS 40.0%
TTAGGCTTAATCTCGGATGT+GGG - chr8_1:70034854-70034873 Msa1210820:CDS 40.0%
TTTAGGCTTAATCTCGGATG+TGG - chr8_1:70034855-70034874 Msa1210820:CDS 40.0%
!! AACGGCTTTAGGCTTAATCT+CGG - chr8_1:70034861-70034880 Msa1210820:CDS 40.0%
CACATCAAGTTTCTGCAAAG+AGG - chr8_1:70035130-70035149 Msa1210820:CDS 40.0%
CTCTTTGCAGAAACTTGATG+TGG + chr8_1:70035128-70035147 Msa1210810:intron 40.0%
TTTGCAGAAACTTGATGTGG+AGG + chr8_1:70035131-70035150 Msa1210810:intron 40.0%
CTTATATGCCGAAGACTTGA+TGG + chr8_1:70035373-70035392 Msa1210810:three_prime_UTR 40.0%
TGAGCTTCACAAACTAGACA+GGG - chr8_1:70035477-70035496 Msa1210820:intron 40.0%
ATGAGCTTCACAAACTAGAC+AGG - chr8_1:70035478-70035497 Msa1210820:intron 40.0%
GGGAATAGCTGGTAAGATTG+GGG + chr8_1:70033331-70033350 Msa1210810:CDS 45.0%
AAGGCTTTCACAGCAACTCT+CGG + chr8_1:70033365-70033384 Msa1210810:CDS 45.0%
! ATTGAGCTTTGTGCCAAGCA+AGG - chr8_1:70033442-70033461 None:intergenic 45.0%
GAGAGAGAGAAAGAGGGTTA+CGG - chr8_1:70033465-70033484 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAGA+GGG - chr8_1:70033471-70033490 None:intergenic 45.0%
TGAGAGAGAGAGAGAGAAAG+AGG - chr8_1:70033472-70033491 None:intergenic 45.0%
TGGCAGTGTGTTTATAAGCG+GGG - chr8_1:70033929-70033948 None:intergenic 45.0%
CTGGCAGTGTGTTTATAAGC+GGG - chr8_1:70033930-70033949 None:intergenic 45.0%
GCTGGCAGTGTGTTTATAAG+CGG - chr8_1:70033931-70033950 None:intergenic 45.0%
GTGTGGATATAAACGGTGGA+TGG + chr8_1:70034010-70034029 Msa1210810:intron 45.0%
TCGTGTGACTGAATAGCACT+AGG + chr8_1:70034106-70034125 Msa1210810:intron 45.0%
GTGACTGAATAGCACTAGGA+AGG + chr8_1:70034110-70034129 Msa1210810:intron 45.0%
TGGTCTTCATGTCTCTGTGT+TGG + chr8_1:70034464-70034483 Msa1210810:intron 45.0%
GGTCTTCATGTCTCTGTGTT+GGG + chr8_1:70034465-70034484 Msa1210810:intron 45.0%
! ATTATGACAGAGGGGTATGG+GGG - chr8_1:70034520-70034539 None:intergenic 45.0%
GGCTACGTCTATTATGACAG+AGG - chr8_1:70034530-70034549 None:intergenic 45.0%
TCACGTGACTAGGTGATGAT+GGG - chr8_1:70034551-70034570 None:intergenic 45.0%
TTCACGTGACTAGGTGATGA+TGG - chr8_1:70034552-70034571 None:intergenic 45.0%
CACATGTCTTTCACGTGACT+AGG - chr8_1:70034561-70034580 None:intergenic 45.0%
GTCACGTGAAAGACATGTGA+TGG + chr8_1:70034562-70034581 Msa1210810:intron 45.0%
!! TTAAGTTGGGACAGACGAGT+TGG + chr8_1:70034586-70034605 Msa1210810:intron 45.0%
GATATTCATTTCGGGAGCGA+AGG + chr8_1:70034636-70034655 Msa1210810:intron 45.0%
TCCTTTATGGGTCATGACAG+GGG - chr8_1:70034666-70034685 None:intergenic 45.0%
CTCCTTTATGGGTCATGACA+GGG - chr8_1:70034667-70034686 None:intergenic 45.0%
TGTCATGACCCATAAAGGAG+CGG + chr8_1:70034667-70034686 Msa1210810:intron 45.0%
GGAAAACATGTGCTTCTGAC+TGG + chr8_1:70034754-70034773 Msa1210810:CDS 45.0%
TCTCAAGAGGATAAGCACGA+AGG + chr8_1:70034778-70034797 Msa1210810:CDS 45.0%
CTCAAGAGGATAAGCACGAA+GGG + chr8_1:70034779-70034798 Msa1210810:CDS 45.0%
TCAAGAGGATAAGCACGAAG+GGG + chr8_1:70034780-70034799 Msa1210810:CDS 45.0%
TACAATGGTATAGACCCTGC+CGG - chr8_1:70034990-70035009 Msa1210820:intron 45.0%
TGTACTTGCGGTGAGTACAA+TGG - chr8_1:70035005-70035024 Msa1210820:intron 45.0%
AAACTTGATGTGGAGGATGC+TGG + chr8_1:70035138-70035157 Msa1210810:CDS 45.0%
GCATGTGGTATACAGTAGAG+TGG + chr8_1:70035413-70035432 Msa1210810:three_prime_UTR 45.0%
GGGAATAGCTGGTAAGATTG+GGG + chr8_1:70033331-70033350 Msa1210810:CDS 45.0%
AAGGCTTTCACAGCAACTCT+CGG + chr8_1:70033365-70033384 Msa1210810:CDS 45.0%
! ATTGAGCTTTGTGCCAAGCA+AGG - chr8_1:70033442-70033461 None:intergenic 45.0%
GAGAGAGAGAAAGAGGGTTA+CGG - chr8_1:70033465-70033484 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAGA+GGG - chr8_1:70033471-70033490 None:intergenic 45.0%
TGAGAGAGAGAGAGAGAAAG+AGG - chr8_1:70033472-70033491 None:intergenic 45.0%
TGGCAGTGTGTTTATAAGCG+GGG - chr8_1:70033929-70033948 None:intergenic 45.0%
CTGGCAGTGTGTTTATAAGC+GGG - chr8_1:70033930-70033949 None:intergenic 45.0%
GCTGGCAGTGTGTTTATAAG+CGG - chr8_1:70033931-70033950 None:intergenic 45.0%
GTGTGGATATAAACGGTGGA+TGG + chr8_1:70034010-70034029 Msa1210810:intron 45.0%
TCGTGTGACTGAATAGCACT+AGG + chr8_1:70034106-70034125 Msa1210810:intron 45.0%
GTGACTGAATAGCACTAGGA+AGG + chr8_1:70034110-70034129 Msa1210810:intron 45.0%
TGGTCTTCATGTCTCTGTGT+TGG + chr8_1:70034464-70034483 Msa1210810:intron 45.0%
GGTCTTCATGTCTCTGTGTT+GGG + chr8_1:70034465-70034484 Msa1210810:intron 45.0%
! ATTATGACAGAGGGGTATGG+GGG - chr8_1:70034520-70034539 None:intergenic 45.0%
GGCTACGTCTATTATGACAG+AGG - chr8_1:70034530-70034549 None:intergenic 45.0%
TCACGTGACTAGGTGATGAT+GGG - chr8_1:70034551-70034570 None:intergenic 45.0%
TTCACGTGACTAGGTGATGA+TGG - chr8_1:70034552-70034571 None:intergenic 45.0%
CACATGTCTTTCACGTGACT+AGG - chr8_1:70034561-70034580 None:intergenic 45.0%
GTCACGTGAAAGACATGTGA+TGG + chr8_1:70034562-70034581 Msa1210810:intron 45.0%
!! TTAAGTTGGGACAGACGAGT+TGG + chr8_1:70034586-70034605 Msa1210810:intron 45.0%
GATATTCATTTCGGGAGCGA+AGG + chr8_1:70034636-70034655 Msa1210810:intron 45.0%
TCCTTTATGGGTCATGACAG+GGG - chr8_1:70034666-70034685 None:intergenic 45.0%
CTCCTTTATGGGTCATGACA+GGG - chr8_1:70034667-70034686 None:intergenic 45.0%
TGTCATGACCCATAAAGGAG+CGG + chr8_1:70034667-70034686 Msa1210810:intron 45.0%
GGAAAACATGTGCTTCTGAC+TGG + chr8_1:70034754-70034773 Msa1210810:CDS 45.0%
TCTCAAGAGGATAAGCACGA+AGG + chr8_1:70034778-70034797 Msa1210810:CDS 45.0%
CTCAAGAGGATAAGCACGAA+GGG + chr8_1:70034779-70034798 Msa1210810:CDS 45.0%
TCAAGAGGATAAGCACGAAG+GGG + chr8_1:70034780-70034799 Msa1210810:CDS 45.0%
TACAATGGTATAGACCCTGC+CGG - chr8_1:70034990-70035009 Msa1210820:intron 45.0%
TGTACTTGCGGTGAGTACAA+TGG - chr8_1:70035005-70035024 Msa1210820:intron 45.0%
AAACTTGATGTGGAGGATGC+TGG + chr8_1:70035138-70035157 Msa1210810:CDS 45.0%
GCATGTGGTATACAGTAGAG+TGG + chr8_1:70035413-70035432 Msa1210810:three_prime_UTR 45.0%
AATCCTCACCTCTCGTAAGC+CGG - chr8_1:70033904-70033923 None:intergenic 50.0%
GGCAGTGTGTTTATAAGCGG+GGG - chr8_1:70033928-70033947 None:intergenic 50.0%
TGCCAGCCCATATCTTATCC+AGG + chr8_1:70033944-70033963 Msa1210810:intron 50.0%
GTCCTGGATAAGATATGGGC+TGG - chr8_1:70033949-70033968 None:intergenic 50.0%
! GGGGGTGTGTTAAATAGTCC+TGG - chr8_1:70033965-70033984 None:intergenic 50.0%
ATGTCCAAGCCTGAACGTGA+GGG - chr8_1:70033985-70034004 None:intergenic 50.0%
! AGGCTTGGACATCTAGAGTG+TGG + chr8_1:70033993-70034012 Msa1210810:intron 50.0%
ATAAACGGTGGATGGCCTAG+TGG + chr8_1:70034018-70034037 Msa1210810:intron 50.0%
CCTTTATGGGTCATGACAGG+GGG - chr8_1:70034665-70034684 None:intergenic 50.0%
GCTCCTTTATGGGTCATGAC+AGG - chr8_1:70034668-70034687 None:intergenic 50.0%
ACTAGGCTCCGCTCCTTTAT+GGG - chr8_1:70034678-70034697 None:intergenic 50.0%
TATCTCGGATACGGGTCACT+AGG - chr8_1:70034695-70034714 None:intergenic 50.0%
!! CTTTTGACTCAGTCCCCACA+TGG + chr8_1:70034733-70034752 Msa1210810:intron 50.0%
ATTCCGCTCTTCCAGGAATG+TGG - chr8_1:70034824-70034843 Msa1210820:CDS 50.0%
ATTCCTGGAAGAGCGGAATC+TGG + chr8_1:70034825-70034844 Msa1210810:CDS 50.0%
! ATGCCTAGTGAGAAGCGCAA+CGG - chr8_1:70034879-70034898 Msa1210820:CDS 50.0%
AATCCTCACCTCTCGTAAGC+CGG - chr8_1:70033904-70033923 None:intergenic 50.0%
GGCAGTGTGTTTATAAGCGG+GGG - chr8_1:70033928-70033947 None:intergenic 50.0%
TGCCAGCCCATATCTTATCC+AGG + chr8_1:70033944-70033963 Msa1210810:intron 50.0%
GTCCTGGATAAGATATGGGC+TGG - chr8_1:70033949-70033968 None:intergenic 50.0%
! GGGGGTGTGTTAAATAGTCC+TGG - chr8_1:70033965-70033984 None:intergenic 50.0%
ATGTCCAAGCCTGAACGTGA+GGG - chr8_1:70033985-70034004 None:intergenic 50.0%
! AGGCTTGGACATCTAGAGTG+TGG + chr8_1:70033993-70034012 Msa1210810:intron 50.0%
ATAAACGGTGGATGGCCTAG+TGG + chr8_1:70034018-70034037 Msa1210810:intron 50.0%
CCTTTATGGGTCATGACAGG+GGG - chr8_1:70034665-70034684 None:intergenic 50.0%
GCTCCTTTATGGGTCATGAC+AGG - chr8_1:70034668-70034687 None:intergenic 50.0%
ACTAGGCTCCGCTCCTTTAT+GGG - chr8_1:70034678-70034697 None:intergenic 50.0%
TATCTCGGATACGGGTCACT+AGG - chr8_1:70034695-70034714 None:intergenic 50.0%
!! CTTTTGACTCAGTCCCCACA+TGG + chr8_1:70034733-70034752 Msa1210810:intron 50.0%
ATTCCGCTCTTCCAGGAATG+TGG - chr8_1:70034824-70034843 Msa1210820:CDS 50.0%
ATTCCTGGAAGAGCGGAATC+TGG + chr8_1:70034825-70034844 Msa1210810:CDS 50.0%
! ATGCCTAGTGAGAAGCGCAA+CGG - chr8_1:70034879-70034898 Msa1210820:CDS 50.0%
! TTCGTAAGGGTGTGTGAGCG+TGG + chr8_1:70033273-70033292 Msa1210810:five_prime_UTR 55.0%
!! TAACGGAGAAAGTGCCGGTG+AGG - chr8_1:70033406-70033425 None:intergenic 55.0%
! GCACAAAACCGGCTTACGAG+AGG + chr8_1:70033893-70033912 Msa1210810:intron 55.0%
! AAACCGGCTTACGAGAGGTG+AGG + chr8_1:70033898-70033917 Msa1210810:intron 55.0%
TAACACACCCCCTCACGTTC+AGG + chr8_1:70033973-70033992 Msa1210810:intron 55.0%
TGTCCAAGCCTGAACGTGAG+GGG - chr8_1:70033984-70034003 None:intergenic 55.0%
GATGTCCAAGCCTGAACGTG+AGG - chr8_1:70033986-70034005 None:intergenic 55.0%
!! GTTGGGACAGACGAGTTGGT+TGG + chr8_1:70034590-70034609 Msa1210810:intron 55.0%
TTGGCCACATGCTCGACATG+TGG + chr8_1:70034609-70034628 Msa1210810:intron 55.0%
TCGTCCACATGTCGAGCATG+TGG - chr8_1:70034616-70034635 None:intergenic 55.0%
CCCCCTGTCATGACCCATAA+AGG + chr8_1:70034662-70034681 Msa1210810:intron 55.0%
CACTAGGCTCCGCTCCTTTA+TGG - chr8_1:70034679-70034698 None:intergenic 55.0%
GCTTCTGACTGGGTCTCAAG+AGG + chr8_1:70034765-70034784 Msa1210810:CDS 55.0%
AGAGGATAAGCACGAAGGGG+TGG + chr8_1:70034783-70034802 Msa1210810:CDS 55.0%
GAGGATAAGCACGAAGGGGT+GGG + chr8_1:70034784-70034803 Msa1210810:CDS 55.0%
AGCACGAAGGGGTGGGATAT+CGG + chr8_1:70034791-70034810 Msa1210810:CDS 55.0%
AGGGGTGGGATATCGGATGA+AGG + chr8_1:70034798-70034817 Msa1210810:CDS 55.0%
TCGGATGAAGGCCACATTCC+TGG + chr8_1:70034810-70034829 Msa1210810:CDS 55.0%
AGGCCACATTCCTGGAAGAG+CGG + chr8_1:70034818-70034837 Msa1210810:CDS 55.0%
CTACCAGATTCCGCTCTTCC+AGG - chr8_1:70034831-70034850 Msa1210820:CDS 55.0%
! GTGAGAAGCGCAACGGCTTT+AGG - chr8_1:70034872-70034891 Msa1210820:CDS 55.0%
AAGCCGTTGCGCTTCTCACT+AGG + chr8_1:70034873-70034892 Msa1210810:intron 55.0%
! CCTCTAGCTTGGTACATCGC+CGG + chr8_1:70034968-70034987 Msa1210810:intron 55.0%
TGTGGAGGATGCTGGTGAGA+AGG + chr8_1:70035146-70035165 Msa1210810:CDS 55.0%
ACGCTCACACACCCTTACGA+AGG - chr8_1:70033274-70033293 None:intergenic 55.0%
! TTCGTAAGGGTGTGTGAGCG+TGG + chr8_1:70033273-70033292 Msa1210810:five_prime_UTR 55.0%
!! TAACGGAGAAAGTGCCGGTG+AGG - chr8_1:70033406-70033425 None:intergenic 55.0%
! GCACAAAACCGGCTTACGAG+AGG + chr8_1:70033893-70033912 Msa1210810:intron 55.0%
! AAACCGGCTTACGAGAGGTG+AGG + chr8_1:70033898-70033917 Msa1210810:intron 55.0%
TAACACACCCCCTCACGTTC+AGG + chr8_1:70033973-70033992 Msa1210810:intron 55.0%
TGTCCAAGCCTGAACGTGAG+GGG - chr8_1:70033984-70034003 None:intergenic 55.0%
GATGTCCAAGCCTGAACGTG+AGG - chr8_1:70033986-70034005 None:intergenic 55.0%
!! GTTGGGACAGACGAGTTGGT+TGG + chr8_1:70034590-70034609 Msa1210810:intron 55.0%
TTGGCCACATGCTCGACATG+TGG + chr8_1:70034609-70034628 Msa1210810:intron 55.0%
TCGTCCACATGTCGAGCATG+TGG - chr8_1:70034616-70034635 None:intergenic 55.0%
CCCCCTGTCATGACCCATAA+AGG + chr8_1:70034662-70034681 Msa1210810:intron 55.0%
CACTAGGCTCCGCTCCTTTA+TGG - chr8_1:70034679-70034698 None:intergenic 55.0%
GCTTCTGACTGGGTCTCAAG+AGG + chr8_1:70034765-70034784 Msa1210810:CDS 55.0%
AGAGGATAAGCACGAAGGGG+TGG + chr8_1:70034783-70034802 Msa1210810:CDS 55.0%
GAGGATAAGCACGAAGGGGT+GGG + chr8_1:70034784-70034803 Msa1210810:CDS 55.0%
AGCACGAAGGGGTGGGATAT+CGG + chr8_1:70034791-70034810 Msa1210810:CDS 55.0%
AGGGGTGGGATATCGGATGA+AGG + chr8_1:70034798-70034817 Msa1210810:CDS 55.0%
TCGGATGAAGGCCACATTCC+TGG + chr8_1:70034810-70034829 Msa1210810:CDS 55.0%
AGGCCACATTCCTGGAAGAG+CGG + chr8_1:70034818-70034837 Msa1210810:CDS 55.0%
CTACCAGATTCCGCTCTTCC+AGG - chr8_1:70034831-70034850 Msa1210820:CDS 55.0%
! GTGAGAAGCGCAACGGCTTT+AGG - chr8_1:70034872-70034891 Msa1210820:CDS 55.0%
AAGCCGTTGCGCTTCTCACT+AGG + chr8_1:70034873-70034892 Msa1210810:intron 55.0%
! CCTCTAGCTTGGTACATCGC+CGG + chr8_1:70034968-70034987 Msa1210810:intron 55.0%
TGTGGAGGATGCTGGTGAGA+AGG + chr8_1:70035146-70035165 Msa1210810:CDS 55.0%
GTCCAAGCCTGAACGTGAGG+GGG - chr8_1:70033983-70034002 None:intergenic 60.0%
CCGGCGATGTACCAAGCTAG+AGG - chr8_1:70034971-70034990 Msa1210820:intron 60.0%
TAGCTTGGTACATCGCCGGC+AGG + chr8_1:70034972-70034991 Msa1210810:intron 60.0%
AGCTTGGTACATCGCCGGCA+GGG + chr8_1:70034973-70034992 Msa1210810:intron 60.0%
GTCCAAGCCTGAACGTGAGG+GGG - chr8_1:70033983-70034002 None:intergenic 60.0%
CCGGCGATGTACCAAGCTAG+AGG - chr8_1:70034971-70034990 Msa1210820:intron 60.0%
TAGCTTGGTACATCGCCGGC+AGG + chr8_1:70034972-70034991 Msa1210810:intron 60.0%
AGCTTGGTACATCGCCGGCA+GGG + chr8_1:70034973-70034992 Msa1210810:intron 60.0%
CACCCCCTCACGTTCAGGCT+TGG + chr8_1:70033978-70033997 Msa1210810:intron 65.0%
CACCCCCTCACGTTCAGGCT+TGG + chr8_1:70033978-70033997 Msa1210810:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70033273 70035506 70033273 ID=Msa1210810;Name=Msa1210810
chr8_1 mRNA 70033273 70035506 70033273 ID=Msa1210810-mRNA-1;Parent=Msa1210810;Name=Msa1210810-mRNA-1;_AED=0.14;_eAED=0.14;_QI=56|0|0.66|0.66|1|1|3|330|91
chr8_1 exon 70033273 70033463 70033273 ID=Msa1210810-mRNA-1:exon:23411;Parent=Msa1210810-mRNA-1
chr8_1 exon 70034745 70034846 70034745 ID=Msa1210810-mRNA-1:exon:23412;Parent=Msa1210810-mRNA-1
chr8_1 exon 70035138 70035506 70035138 ID=Msa1210810-mRNA-1:exon:23413;Parent=Msa1210810-mRNA-1
chr8_1 five_prime_UTR 70033273 70033328 70033273 ID=Msa1210810-mRNA-1:five_prime_utr;Parent=Msa1210810-mRNA-1
chr8_1 CDS 70033329 70033463 70033329 ID=Msa1210810-mRNA-1:cds;Parent=Msa1210810-mRNA-1
chr8_1 CDS 70034745 70034846 70034745 ID=Msa1210810-mRNA-1:cds;Parent=Msa1210810-mRNA-1
chr8_1 CDS 70035138 70035176 70035138 ID=Msa1210810-mRNA-1:cds;Parent=Msa1210810-mRNA-1
chr8_1 three_prime_UTR 70035177 70035506 70035177 ID=Msa1210810-mRNA-1:three_prime_utr;Parent=Msa1210810-mRNA-1
Gene Sequence

>Msa1210810

ATGGGAATAGCTGGTAAGATTGGGGATTACACTTTCAAGGCTTTCACAGCAACTCTCGGCATCACTACTATCTACCTCACCGGCACTTTCTCCGTTAATGTTTACAAAGGCCTTGCTTGGCACAAAGCTCAATCCTCCCCACATGGAAAACATGTGCTTCTGACTGGGTCTCAAGAGGATAAGCACGAAGGGGTGGGATATCGGATGAAGGCCACATTCCTGGAAGAGCGGAATCTGAAACTTGATGTGGAGGATGCTGGTGAGAAGGCTTCGTGA

Protein sequence

>Msa1210810

MGIAGKIGDYTFKAFTATLGITTIYLTGTFSVNVYKGLAWHKAQSSPHGKHVLLTGSQEDKHEGVGYRMKATFLEERNLKLDVEDAGEKAS*