AlfalfaGEDB | Msa0876480

M. sativa cultivar zhongmu-4 / Msa0876480

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876480	XP_024641137.1	91.317	357	7	1	1	333	1	357	0.0	656

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876480	A0A072U7P6	90.476	357	10	2	1	333	1	357	0.0	645

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011660	Msa0876480	-0.815041	1.132425e-51	-8.615850e-47
Msa0150840	Msa0876480	0.803422	3.513027e-49	-8.615850e-47
Msa0180500	Msa0876480	0.813420	2.582930e-51	-8.615850e-47
Msa0288100	Msa0876480	0.827983	1.157528e-54	-8.615850e-47
Msa0487800	Msa0876480	0.800355	1.498077e-48	-8.615850e-47
Msa0701010	Msa0876480	0.800269	1.560329e-48	-8.615850e-47
Msa0844450	Msa0876480	0.830940	2.212604e-55	-8.615850e-47
Msa0844510	Msa0876480	0.807681	4.487807e-50	-8.615850e-47
Msa0876480	Msa0919850	0.809077	2.261843e-50	-8.615850e-47
Msa0876480	Msa0967180	0.802391	5.736057e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876480	MtrunA17_Chr6g0457661	98.246	171	3	0	163	333	1	171	9.54e-120	342
Msa0876480	MtrunA17_Chr6g0457671	99.286	140	1	0	1	140	1	140	1.33e-99	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876480	AT5G38380.1	66.289	353	89	4	1	325	1	351	5.27e-171	479
Msa0876480	AT5G38380.2	73.152	257	63	3	1	254	1	254	1.06e-137	391

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Find 98 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTAACTAGAATATACCA+CGG	0.652707	6_1:-14522142	Msa0876480:intron
AAGAAAGCCCAAGCCGAGAA+TGG	0.506200	6_1:+14521627	None:intergenic
AAGGCCACTTTCCAACACAC+AGG	0.708330	6_1:-14524138	Msa0876480:intron
AAGTAGGTAGTGATGACATC+TGG	0.455533	6_1:+14520644	None:intergenic
AATCACTTGTCGGATGATCG+AGG	0.672183	6_1:-14526230	Msa0876480:CDS
AATTAAGCTTACCTGTGTGT+TGG	0.513261	6_1:+14524127	None:intergenic
AATTTCCCATTGCTTTCAGA+AGG	0.541298	6_1:+14521651	None:intergenic
ACACTCCAGACAGTACTCCA+AGG	0.689003	6_1:+14523406	None:intergenic
ACTTAACTAGAATATACCAC+GGG	0.661785	6_1:-14522141	Msa0876480:intron
AGAGTATACGCACTTCAAGT+AGG	0.595816	6_1:+14520628	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTATTATATATTCTGGGTA+TGG	-	chr6_1:14519345-14519364	Msa0876480:three_prime_UTR	30.0%
ATTTGGTTGTGATATTCTGA+AGG	-	chr6_1:14519453-14519472	Msa0876480:three_prime_UTR	30.0%
AATGATTTCAGCTTAAAGCA+TGG	+	chr6_1:14519531-14519550	None:intergenic	30.0%
ACTTATTGTGTCATAAAGCA+CGG	-	chr6_1:14519614-14519633	Msa0876480:intron	30.0%
TCGAATCTCAATACTTAAGA+AGG	+	chr6_1:14520009-14520028	None:intergenic	30.0%
TTTCAAGCAATAATTACTCG+TGG	-	chr6_1:14520129-14520148	Msa0876480:intron	30.0%
CTATGTATTGCTAACACTTT+GGG	-	chr6_1:14520163-14520182	Msa0876480:intron	30.0%
ACCTACCATAAAAAATATGG+TGG	-	chr6_1:14520601-14520620	Msa0876480:intron	30.0%
GACTTGTAGATTCTATAGTA+AGG	-	chr6_1:14520660-14520679	Msa0876480:CDS	30.0%
TTGTAGATTCTATAGTAAGG+AGG	-	chr6_1:14520663-14520682	Msa0876480:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	14519140	14526369	14519140	ID=Msa0876480;Name=Msa0876480
chr6_1	mRNA	14519140	14526369	14519140	ID=Msa0876480-mRNA-1;Parent=Msa0876480;Name=Msa0876480-mRNA-1;_AED=0.18;_eAED=0.18;_QI=105\|0.88\|0.9\|1\|0.88\|0.8\|10\|432\|333
chr6_1	exon	14519140	14519570	14519140	ID=Msa0876480-mRNA-1:exon:4198;Parent=Msa0876480-mRNA-1
chr6_1	exon	14520641	14520754	14520641	ID=Msa0876480-mRNA-1:exon:4197;Parent=Msa0876480-mRNA-1
chr6_1	exon	14520875	14521005	14520875	ID=Msa0876480-mRNA-1:exon:4196;Parent=Msa0876480-mRNA-1
chr6_1	exon	14521567	14521679	14521567	ID=Msa0876480-mRNA-1:exon:4195;Parent=Msa0876480-mRNA-1
chr6_1	exon	14521830	14521916	14521830	ID=Msa0876480-mRNA-1:exon:4194;Parent=Msa0876480-mRNA-1
chr6_1	exon	14522016	14522153	14522016	ID=Msa0876480-mRNA-1:exon:4193;Parent=Msa0876480-mRNA-1
chr6_1	exon	14523374	14523458	14523374	ID=Msa0876480-mRNA-1:exon:4192;Parent=Msa0876480-mRNA-1
chr6_1	exon	14523940	14524025	14523940	ID=Msa0876480-mRNA-1:exon:4191;Parent=Msa0876480-mRNA-1
chr6_1	exon	14524139	14524331	14524139	ID=Msa0876480-mRNA-1:exon:4190;Parent=Msa0876480-mRNA-1
chr6_1	exon	14526209	14526369	14526209	ID=Msa0876480-mRNA-1:exon:4189;Parent=Msa0876480-mRNA-1
chr6_1	five_prime_UTR	14526265	14526369	14526265	ID=Msa0876480-mRNA-1:five_prime_utr;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14526209	14526264	14526209	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14524139	14524331	14524139	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14523940	14524025	14523940	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14523374	14523458	14523374	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14522016	14522153	14522016	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14521830	14521916	14521830	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14521567	14521679	14521567	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14520875	14521005	14520875	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	CDS	14520642	14520754	14520642	ID=Msa0876480-mRNA-1:cds;Parent=Msa0876480-mRNA-1
chr6_1	three_prime_UTR	14520641	14520641	14520641	ID=Msa0876480-mRNA-1:three_prime_utr;Parent=Msa0876480-mRNA-1
chr6_1	three_prime_UTR	14519140	14519570	14519140	ID=Msa0876480-mRNA-1:three_prime_utr;Parent=Msa0876480-mRNA-1

Gene Sequence

>Msa0876480

ATGATGTCCCCTAATCACTTGTCGGATGATCGAGGTTCTCCTCCTCATCATTTCAGACATACACCGTTGCAGATAATTCATGTTGCTGCAAATTTCTTGAGGATATGGTCAGTATACTCCATGTTCCGCTACTTATCACAGACCGGAGCTTCGGTTGTTCTTTTTCTTTTTGCCTGTCTGGCTCCTGCGGCTATCCTATTTTTGATTTTGCAAAAGCCTTGGAAGGGAAGGCCACTTTCCAACACACAGGTCGTGCCTTCTATAATAAACGGTTTTATAACAGCACTGTATCTTGTCTTGTGGGGAAAGGGACTGAAATCATGTGGACCAGTTAGAGCGATATTGGGTGAGTATTCTGGCGCTGTCCTTGGAGTACTGTCTGGAGTGTTGTATGGGAGGCGAAGTAATCTGTGGAAAAAGAATATACCACGGGAAGATAGAGATGAAACTGAGGCTCAGACAGAACATGTTTTGGGCTTGAAGCAAATGTTAATTCCTATTATTGCTGGTATCCTATCAGCACTGAGGAGAGTGATTGCGAGGCGCGTTTCAATCAAGAATCAACTTAAAAGGAGACTCCATGCTTTAACTATTGCTTCTGCGACGTGCTTTATGTTTCCCATTGCCATGTGGGATGTGATCATAGGATCACCTTCTGAAAGCAATGGGAAATTGCCATTCTCGGCTTGGGCTTTCTTGAGCACTATCCTATTTGGAAATATTTTGATATTCTATGCTGATAGTATTGCAGAGGAGAGATTGCACATGGTTTTCTCCTCACCAAGGCATTTGATGGCGGCTAGTGCATGCATCATTGTCATGGAGATTGTGTACAAGATGGATTTTTCGCTTGCAGGCTTCGTGATTTGCAGCTTAATATTAGGTTTAGGGATATATCAAGCAACTGCATTAGAGCGAAATAGAAAAGATTCTATTCGAAATTCAGATTTATCGAACGGAGAATTCGATAATCAAATCCAGATGTCATCACTACCTACTTGA

Protein sequence

>Msa0876480

MMSPNHLSDDRGSPPHHFRHTPLQIIHVAANFLRIWSVYSMFRYLSQTGASVVLFLFACLAPAAILFLILQKPWKGRPLSNTQVVPSIINGFITALYLVLWGKGLKSCGPVRAILGEYSGAVLGVLSGVLYGRRSNLWKKNIPREDRDETEAQTEHVLGLKQMLIPIIAGILSALRRVIARRVSIKNQLKRRLHALTIASATCFMFPIAMWDVIIGSPSESNGKLPFSAWAFLSTILFGNILIFYADSIAEERLHMVFSSPRHLMAASACIIVMEIVYKMDFSLAGFVICSLILGLGIYQATALERNRKDSIRNSDLSNGEFDNQIQMSSLPT*