Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847010 | XP_003614096.1 | 97.000 | 400 | 9 | 1 | 1 | 400 | 1 | 397 | 0.0 | 789 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847010 | sp|Q9ZQ89|UPS2_ARATH | 77.171 | 403 | 84 | 3 | 1 | 400 | 1 | 398 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847010 | G7JY00 | 97.000 | 400 | 9 | 1 | 1 | 400 | 1 | 397 | 0.0 | 789 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726910 | Msa0847010 | 0.815085 | 1.107705e-51 | -8.615850e-47 |
| Msa0767370 | Msa0847010 | 0.829877 | 4.025103e-55 | -8.615850e-47 |
| Msa0812950 | Msa0847010 | 0.827370 | 1.624080e-54 | -8.615850e-47 |
| Msa0152560 | Msa0847010 | 0.813522 | 2.453393e-51 | -8.615850e-47 |
| Msa0187830 | Msa0847010 | 0.800478 | 1.414701e-48 | -8.615850e-47 |
| Msa0299660 | Msa0847010 | 0.809743 | 1.626856e-50 | -8.615850e-47 |
| Msa0847010 | Msa1023310 | 0.807471 | 4.974977e-50 | -8.615850e-47 |
| Msa0847010 | Msa1221330 | 0.806295 | 8.815017e-50 | -8.615850e-47 |
| Msa0847010 | Msa1279480 | 0.814873 | 1.234036e-51 | -8.615850e-47 |
| Msa0847010 | Msa1355890 | 0.823120 | 1.643603e-53 | -8.615850e-47 |
| Msa0847010 | Msa1457160 | 0.807564 | 4.752210e-50 | -8.615850e-47 |
| Msa0847010 | Msa1461550 | 0.801295 | 9.631717e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847010 | MtrunA17_Chr5g0419251 | 97.000 | 400 | 9 | 1 | 1 | 400 | 1 | 397 | 0.0 | 789 |
| Msa0847010 | MtrunA17_Chr5g0419581 | 88.089 | 403 | 43 | 3 | 1 | 400 | 1 | 401 | 0.0 | 664 |
| Msa0847010 | MtrunA17_Chr5g0419571 | 81.975 | 405 | 64 | 3 | 1 | 400 | 27 | 427 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847010 | AT2G03530.2 | 77.171 | 403 | 84 | 3 | 1 | 400 | 1 | 398 | 0.0 | 613 |
| Msa0847010 | AT2G03530.1 | 77.171 | 403 | 84 | 3 | 1 | 400 | 1 | 398 | 0.0 | 613 |
| Msa0847010 | AT2G03590.2 | 77.000 | 400 | 82 | 2 | 1 | 400 | 1 | 390 | 0.0 | 610 |
| Msa0847010 | AT2G03590.1 | 77.000 | 400 | 82 | 2 | 1 | 400 | 1 | 390 | 0.0 | 610 |
| Msa0847010 | AT2G03530.4 | 76.903 | 381 | 80 | 3 | 1 | 378 | 1 | 376 | 0.0 | 580 |
| Msa0847010 | AT2G03520.1 | 68.642 | 405 | 118 | 3 | 1 | 400 | 1 | 401 | 0.0 | 540 |
| Msa0847010 | AT1G26440.3 | 67.482 | 409 | 116 | 4 | 1 | 400 | 9 | 409 | 0.0 | 530 |
| Msa0847010 | AT1G26440.2 | 67.482 | 409 | 116 | 4 | 1 | 400 | 9 | 409 | 0.0 | 530 |
| Msa0847010 | AT2G03530.5 | 76.415 | 318 | 70 | 2 | 83 | 400 | 1 | 313 | 2.95e-167 | 471 |
| Msa0847010 | AT2G03530.3 | 76.415 | 318 | 70 | 2 | 83 | 400 | 1 | 313 | 2.95e-167 | 471 |
| Msa0847010 | AT1G26440.1 | 61.520 | 408 | 106 | 5 | 1 | 400 | 9 | 373 | 1.07e-164 | 467 |
| Msa0847010 | AT1G26440.6 | 61.369 | 409 | 106 | 5 | 1 | 400 | 9 | 374 | 1.57e-164 | 466 |
| Msa0847010 | AT1G26440.7 | 67.477 | 329 | 95 | 2 | 76 | 400 | 16 | 336 | 1.57e-153 | 437 |
| Msa0847010 | AT1G26440.8 | 67.477 | 329 | 95 | 2 | 76 | 400 | 16 | 336 | 1.57e-153 | 437 |
| Msa0847010 | AT2G03600.4 | 63.450 | 342 | 102 | 4 | 1 | 336 | 1 | 325 | 1.68e-149 | 427 |
| Msa0847010 | AT2G03600.5 | 62.130 | 338 | 105 | 3 | 1 | 336 | 1 | 317 | 7.40e-145 | 415 |
| Msa0847010 | AT1G26440.4 | 55.941 | 404 | 109 | 5 | 1 | 400 | 9 | 347 | 5.55e-137 | 395 |
| Msa0847010 | AT2G03600.6 | 70.000 | 270 | 67 | 1 | 1 | 270 | 1 | 256 | 2.18e-135 | 388 |
| Msa0847010 | AT2G03600.1 | 70.000 | 270 | 67 | 1 | 1 | 270 | 1 | 256 | 2.18e-135 | 388 |
| Msa0847010 | AT2G03600.2 | 64.828 | 290 | 65 | 2 | 1 | 267 | 1 | 276 | 2.38e-129 | 373 |
| Msa0847010 | AT1G26440.5 | 59.878 | 329 | 85 | 3 | 76 | 400 | 16 | 301 | 4.85e-129 | 374 |
| Msa0847010 | AT2G03600.3 | 66.489 | 188 | 49 | 1 | 83 | 270 | 1 | 174 | 2.21e-81 | 247 |
Find 102 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACTTGTGAGCACTTTC+TGG | 0.038144 | 5_4:+28234160 | Msa0847010:CDS |
| TGGGAATGGCCTTCAATTTA+TGG | 0.121139 | 5_4:+28233934 | Msa0847010:CDS |
| GTCATCATTGAAGGCTTATT+TGG | 0.131291 | 5_4:+28233859 | Msa0847010:CDS |
| GCTGGTCTCCTTTGTGGATT+TGG | 0.175727 | 5_4:+28233914 | Msa0847010:CDS |
| GCTGGTTTCCTTGTTGTTCT+TGG | 0.192853 | 5_4:+28230064 | Msa0847010:CDS |
| GACCAATAAGTTTACTTTCT+TGG | 0.212708 | 5_4:-28234377 | None:intergenic |
| CTGGTTTCCTTGTTGTTCTT+GGG | 0.222511 | 5_4:+28230065 | Msa0847010:CDS |
| GGAATAATGACTCGCCTTAA+TGG | 0.249863 | 5_4:-28233434 | None:intergenic |
| AAAATGATTATGCAACTTAA+AGG | 0.253080 | 5_4:+28234302 | Msa0847010:exon |
| CTGGTCTCCTTTGTGGATTT+GGG | 0.268069 | 5_4:+28233915 | Msa0847010:CDS |
| GTTATCATTGCTTTCACCTT+TGG | 0.272469 | 5_4:+28230182 | Msa0847010:CDS |
| GCTTTCACCTTTGGTCAAAT+AGG | 0.278938 | 5_4:+28230191 | Msa0847010:CDS |
| AACCAAGAAAGTAAACTTAT+TGG | 0.285432 | 5_4:+28234375 | Msa0847010:three_prime_UTR |
| GCCAGCTGTGATGACTTTAT+TGG | 0.290683 | 5_4:+28230094 | Msa0847010:CDS |
| GCTGTGCTCATGGCATCGTC+TGG | 0.293335 | 5_4:+28234273 | Msa0847010:CDS |
| ATTCTCACCAGCATTCAATT+TGG | 0.294819 | 5_4:+28233688 | Msa0847010:CDS |
| ATGATTTATACAGGAGGAAT+TGG | 0.299656 | 5_4:+28234432 | Msa0847010:three_prime_UTR |
| TCAAGTATAGCTGTTGTTAT+AGG | 0.300749 | 5_4:+28232624 | Msa0847010:CDS |
| TGAAGGCTTATTTGGGAGAT+TGG | 0.323288 | 5_4:+28233867 | Msa0847010:CDS |
| TCCACTTGTGAGCACTTTCT+GGG | 0.325696 | 5_4:+28234161 | Msa0847010:CDS |
| TTGGCTATAACTTTCTTTGC+AGG | 0.328012 | 5_4:+28233650 | Msa0847010:CDS |
| CCTTGTTGTTCTTGGGGACA+TGG | 0.348148 | 5_4:+28230072 | Msa0847010:CDS |
| GGGAATGGCCTTCAATTTAT+GGG | 0.348344 | 5_4:+28233935 | Msa0847010:CDS |
| CTCCTTTGTGGATTTGGGAA+TGG | 0.350731 | 5_4:+28233920 | Msa0847010:CDS |
| CAGTGGCACACTTTAGATAA+AGG | 0.354076 | 5_4:+28233722 | Msa0847010:CDS |
| AAATACTGCAGTTCCTGCTT+TGG | 0.358972 | 5_4:-28233386 | None:intergenic |
| TTCTATTTGCAATGGCTGGT+GGG | 0.362399 | 5_4:+28232523 | Msa0847010:CDS |
| TTGTTGGCTGGTCTCCTTTG+TGG | 0.367617 | 5_4:+28233908 | Msa0847010:CDS |
| GGAAACCAGCATGCATACTA+TGG | 0.384971 | 5_4:-28230051 | None:intergenic |
| GGCAGTGTAAACACTCAAAT+GGG | 0.391996 | 5_4:-28233750 | None:intergenic |
| TATTGATTCATGATTTATAC+AGG | 0.394534 | 5_4:+28234423 | Msa0847010:three_prime_UTR |
| GAAAGTTGAGACAAGAAGTT+AGG | 0.396418 | 5_4:-28230224 | None:intergenic |
| TCATCATTGAAGGCTTATTT+GGG | 0.399015 | 5_4:+28233860 | Msa0847010:CDS |
| CTTCTTGTCTCAACTTTCTC+AGG | 0.400214 | 5_4:+28230229 | Msa0847010:CDS |
| TTTGGAAAGAGCACTTTCAT+TGG | 0.403085 | 5_4:+28233626 | Msa0847010:CDS |
| TGGTAGAGGCTGGGCATTGT+TGG | 0.403093 | 5_4:+28233892 | Msa0847010:CDS |
| TCTGTTCTATTTGCAATGGC+TGG | 0.404500 | 5_4:+28232519 | Msa0847010:CDS |
| AGTGGCACACTTTAGATAAA+GGG | 0.406481 | 5_4:+28233723 | Msa0847010:CDS |
| ATTGAATGCTGGTGAGAATA+GGG | 0.408151 | 5_4:-28233684 | None:intergenic |
| AGAGGCTGGGCATTGTTGGC+TGG | 0.411782 | 5_4:+28233896 | Msa0847010:CDS |
| TGCTGCTGTTGCTGTGCTCA+TGG | 0.414871 | 5_4:+28234263 | Msa0847010:CDS |
| TTAAACCATTTGCAGGTGTT+TGG | 0.421342 | 5_4:+28233608 | Msa0847010:intron |
| TTGGGAGATTGGAATGGTAG+AGG | 0.424567 | 5_4:+28233878 | Msa0847010:CDS |
| AGGCAGTGTAAACACTCAAA+TGG | 0.430640 | 5_4:-28233751 | None:intergenic |
| AATTGAATGCTGGTGAGAAT+AGG | 0.431496 | 5_4:-28233685 | None:intergenic |
| CTTACCTAAGTCATCATTGA+AGG | 0.436543 | 5_4:+28233850 | Msa0847010:CDS |
| TTTGTCCACTCAGTATGCTT+GGG | 0.439898 | 5_4:+28232566 | Msa0847010:CDS |
| AAAGAGCACTTTCATTGGAT+TGG | 0.445439 | 5_4:+28233631 | Msa0847010:CDS |
| ATTTGTCCACTCAGTATGCT+TGG | 0.448183 | 5_4:+28232565 | Msa0847010:CDS |
| GGTGGGGTTGTCCTTAGCAT+TGG | 0.454459 | 5_4:+28232540 | Msa0847010:CDS |
| CTACACCATCACTAATCTCT+TGG | 0.456636 | 5_4:+28230154 | Msa0847010:CDS |
| AGTGATGGTGTAGTCAAGAT+AGG | 0.456695 | 5_4:-28230144 | None:intergenic |
| AGGAGAACATATACATTGCT+TGG | 0.456969 | 5_4:+28234219 | Msa0847010:CDS |
| GCCTTCTGTTCTATTTGCAA+TGG | 0.461913 | 5_4:+28232515 | Msa0847010:CDS |
| GTTCTATTTGCAATGGCTGG+TGG | 0.473832 | 5_4:+28232522 | Msa0847010:CDS |
| AATGTATATGGTGGAGAGCA+AGG | 0.477899 | 5_4:+28230022 | None:intergenic |
| GAAGGTGATGTTTAGAATGA+TGG | 0.478524 | 5_4:-28233807 | None:intergenic |
| GACTTAGGTAAGTTCAAGAC+AGG | 0.480917 | 5_4:-28233839 | None:intergenic |
| TTTATGGGTGGTCAAGCTGC+TGG | 0.489784 | 5_4:+28233950 | Msa0847010:CDS |
| CTTGACCACCCATAAATTGA+AGG | 0.492169 | 5_4:-28233943 | None:intergenic |
| TCCAATAAAGTCATCACAGC+TGG | 0.498538 | 5_4:-28230095 | None:intergenic |
| CTGTGCTCATGGCATCGTCT+GGG | 0.498650 | 5_4:+28234274 | Msa0847010:CDS |
| AGTTCAAGACAGGGTGGTAA+AGG | 0.499357 | 5_4:-28233829 | None:intergenic |
| TGGTTTCCTTGTTGTTCTTG+GGG | 0.501836 | 5_4:+28230066 | Msa0847010:CDS |
| GATTCAAAGGATCTAGAGAA+TGG | 0.510044 | 5_4:+28233349 | Msa0847010:CDS |
| GAGATTGGAATGGTAGAGGC+TGG | 0.510826 | 5_4:+28233882 | Msa0847010:CDS |
| AACTATTCATTCAACTTGAA+AGG | 0.513902 | 5_4:+28234326 | Msa0847010:three_prime_UTR |
| TAAGCCTTCAATGATGACTT+AGG | 0.519224 | 5_4:-28233854 | None:intergenic |
| TCTATTTGCAATGGCTGGTG+GGG | 0.519530 | 5_4:+28232524 | Msa0847010:CDS |
| GGAGAACATATACATTGCTT+GGG | 0.522179 | 5_4:+28234220 | Msa0847010:CDS |
| TACATAAACAGATGATTCAA+AGG | 0.527343 | 5_4:+28233336 | Msa0847010:intron |
| TAGTCAAGATAGGTGTGTTG+AGG | 0.533891 | 5_4:-28230134 | None:intergenic |
| TTTGTTGCCAAATTGAATGC+TGG | 0.537646 | 5_4:-28233695 | None:intergenic |
| GCTTATTTGGGAGATTGGAA+TGG | 0.541985 | 5_4:+28233872 | Msa0847010:CDS |
| CCCCAGAAAGTGCTCACAAG+TGG | 0.548827 | 5_4:-28234162 | None:intergenic |
| GCCATTGCAAATAGAACAGA+AGG | 0.555972 | 5_4:-28232516 | None:intergenic |
| AGTGCAAACAAAGCCAAAGC+AGG | 0.564487 | 5_4:+28233373 | Msa0847010:CDS |
| CTGTGATGACTTTATTGGAA+AGG | 0.567287 | 5_4:+28230099 | Msa0847010:CDS |
| CCACTTGTGAGCACTTTCTG+GGG | 0.568469 | 5_4:+28234162 | Msa0847010:CDS |
| CTTTATCTAAAGTGTGCCAC+TGG | 0.570037 | 5_4:-28233721 | None:intergenic |
| TGGACAAATTTCCAATGCTA+AGG | 0.572809 | 5_4:-28232551 | None:intergenic |
| ATGTATATGGTGGAGAGCAA+GGG | 0.579654 | 5_4:+28230023 | Msa0847010:CDS |
| ATCAGTGCCTATTTGACCAA+AGG | 0.596958 | 5_4:-28230198 | None:intergenic |
| CAAGACAGGGTGGTAAAGGA+AGG | 0.602138 | 5_4:-28233825 | None:intergenic |
| AGATTGGAATGGTAGAGGCT+GGG | 0.609712 | 5_4:+28233883 | Msa0847010:CDS |
| AGGTGCCATAGTATGCATGC+TGG | 0.613318 | 5_4:+28230046 | Msa0847010:CDS |
| GTGGCACACTTTAGATAAAG+GGG | 0.613700 | 5_4:+28233724 | Msa0847010:CDS |
| GTGAGTATAGAAAATCATCA+AGG | 0.624685 | 5_4:+28234199 | Msa0847010:CDS |
| ACTTTGAATGAAGAAAGTAA+AGG | 0.626829 | 5_4:+28233242 | Msa0847010:CDS |
| AGCAGCCAAGAGATTAGTGA+TGG | 0.628687 | 5_4:-28230159 | None:intergenic |
| TGATAATAAGACTAAGCTCA+AGG | 0.631837 | 5_4:+28232886 | Msa0847010:CDS |
| ATGACTTTATTGGAAAGGAG+AGG | 0.632269 | 5_4:+28230104 | Msa0847010:CDS |
| CCATGTCCCCAAGAACAACA+AGG | 0.634994 | 5_4:-28230072 | None:intergenic |
| TGATTCATGATTTATACAGG+AGG | 0.635277 | 5_4:+28234426 | Msa0847010:three_prime_UTR |
| AATGGCCTTCAATTTATGGG+TGG | 0.641282 | 5_4:+28233938 | Msa0847010:CDS |
| TATATGGTGGAGAGCAAGGG+AGG | 0.646098 | 5_4:+28230026 | Msa0847010:CDS |
| GGCCATTCCCAAATCCACAA+AGG | 0.662272 | 5_4:-28233922 | None:intergenic |
| ATTTGGCAACAAATGACCAG+TGG | 0.685835 | 5_4:+28233705 | Msa0847010:CDS |
| GCAGTGTAAACACTCAAATG+GGG | 0.715897 | 5_4:-28233749 | None:intergenic |
| AAAAGCCCAAGCATACTGAG+TGG | 0.720310 | 5_4:-28232571 | None:intergenic |
| ACTTAGGTAAGTTCAAGACA+GGG | 0.731646 | 5_4:-28233838 | None:intergenic |
| TAGGTAAGTTCAAGACAGGG+TGG | 0.740450 | 5_4:-28233835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATACAAACATAAATAAT+AGG | + | chr5_4:28230347-28230366 | Msa0847010:intron | 10.0% |
| !!! | TAAAATATTTTAATACAACT+AGG | - | chr5_4:28230853-28230872 | None:intergenic | 10.0% |
| !!! | TTAAGAAAATGTTTATTTTT+AGG | + | chr5_4:28231090-28231109 | Msa0847010:intron | 10.0% |
| !!! | TAAGAAAATGTTTATTTTTA+GGG | + | chr5_4:28231091-28231110 | Msa0847010:intron | 10.0% |
| !!! | CTAATTTTCATTTTTTTATT+GGG | - | chr5_4:28231259-28231278 | None:intergenic | 10.0% |
| !!! | TCTAATTTTCATTTTTTTAT+TGG | - | chr5_4:28231260-28231279 | None:intergenic | 10.0% |
| !! | TATTAAAAAAAATATGCTTT+GGG | - | chr5_4:28231746-28231765 | None:intergenic | 10.0% |
| !! | ATATTAAAAAAAATATGCTT+TGG | - | chr5_4:28231747-28231766 | None:intergenic | 10.0% |
| !!! | TGACAAAAAATTTAAATTTT+GGG | - | chr5_4:28231978-28231997 | None:intergenic | 10.0% |
| !!! | TTTTCTATGTTAATTCTAAA+TGG | + | chr5_4:28230269-28230288 | Msa0847010:intron | 15.0% |
| !!! | ATTTTTTGGCTTAATAAATT+TGG | - | chr5_4:28230556-28230575 | None:intergenic | 15.0% |
| !!! | ATATTTTAAACGATAAAAAG+AGG | + | chr5_4:28230865-28230884 | Msa0847010:intron | 15.0% |
| !! | GTATTAAAAAAATTAATGAC+TGG | - | chr5_4:28231010-28231029 | None:intergenic | 15.0% |
| !!! | CTGACAAAAAATTTAAATTT+TGG | - | chr5_4:28231979-28231998 | None:intergenic | 15.0% |
| !!! | TAAAATTCCATAAACATTTT+TGG | - | chr5_4:28232179-28232198 | None:intergenic | 15.0% |
| !!! | TTTATGGAATTTTATTTACA+GGG | + | chr5_4:28232185-28232204 | Msa0847010:intron | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr5_4:28232305-28232324 | Msa0847010:intron | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr5_4:28232306-28232325 | Msa0847010:intron | 15.0% |
| !! | TTAATTAACCCAATAAAAAA+TGG | + | chr5_4:28232338-28232357 | Msa0847010:intron | 15.0% |
| !!! | TTTGTTAACCATTTTTTATT+GGG | - | chr5_4:28232349-28232368 | None:intergenic | 15.0% |
| !! | TATCTATATATAATGAGAAT+GGG | - | chr5_4:28232653-28232672 | None:intergenic | 15.0% |
| !!! | TTGATGATATTTTTAGTCAT+GGG | + | chr5_4:28230314-28230333 | Msa0847010:intron | 20.0% |
| !! | AAAAAACACAAACTCTTATT+TGG | - | chr5_4:28230525-28230544 | None:intergenic | 20.0% |
| !! | TTGAAAAATACGAAAGAAAT+GGG | - | chr5_4:28230814-28230833 | None:intergenic | 20.0% |
| !! | AAAAACAGAAGAAAAAATCT+AGG | + | chr5_4:28231543-28231562 | Msa0847010:intron | 20.0% |
| !!! | CTGACAAAAAATTCAAATTT+TGG | - | chr5_4:28231877-28231896 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTGTGATTGTCA+GGG | - | chr5_4:28232044-28232063 | None:intergenic | 20.0% |
| !! | TGACAATCACAAATAAAAAA+GGG | + | chr5_4:28232044-28232063 | Msa0847010:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATT+AGG | - | chr5_4:28232087-28232106 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr5_4:28232118-28232137 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr5_4:28232119-28232138 | None:intergenic | 20.0% |
| !!! | GTTTATGGAATTTTATTTAC+AGG | + | chr5_4:28232184-28232203 | Msa0847010:intron | 20.0% |
| !!! | ATGTTGATGGAAAATTTTAT+AGG | + | chr5_4:28232246-28232265 | Msa0847010:intron | 20.0% |
| !!! | GTTTGTTAACCATTTTTTAT+TGG | - | chr5_4:28232350-28232369 | None:intergenic | 20.0% |
| !! | GTATCTATATATAATGAGAA+TGG | - | chr5_4:28232654-28232673 | None:intergenic | 20.0% |
| !!! | AACAACCTTGAATTATTTTT+TGG | + | chr5_4:28232766-28232785 | Msa0847010:CDS | 20.0% |
| !! | AAATGATTAAGCAACTATAA+TGG | - | chr5_4:28233140-28233159 | None:intergenic | 20.0% |
| !!! | CAAAATATGTTATTTTTCCA+GGG | + | chr5_4:28233205-28233224 | Msa0847010:intron | 20.0% |
| !!! | AAAATATGTTATTTTTCCAG+GGG | + | chr5_4:28233206-28233225 | Msa0847010:intron | 20.0% |
| !! | TCATCTGTTTATGTAATAAA+GGG | - | chr5_4:28233331-28233350 | None:intergenic | 20.0% |
| !! | ATCATCTGTTTATGTAATAA+AGG | - | chr5_4:28233332-28233351 | None:intergenic | 20.0% |
| !! | AGAAACTGAAAAATAAAAGA+AGG | - | chr5_4:28233774-28233793 | None:intergenic | 20.0% |
| !!! | GCAAAAATCTATGTATATTT+TGG | + | chr5_4:28234107-28234126 | Msa0847010:intron | 20.0% |
| !!! | ATGTATATTTTGGTATTTGA+AGG | + | chr5_4:28234117-28234136 | Msa0847010:intron | 20.0% |
| !!! | TTAAGTTGCATAATCATTTT+CGG | - | chr5_4:28234302-28234321 | None:intergenic | 20.0% |
| !! | AAAATGATTATGCAACTTAA+AGG | + | chr5_4:28234302-28234321 | Msa0847010:exon | 20.0% |
| !!! | TATTGATTCATGATTTATAC+AGG | + | chr5_4:28234423-28234442 | Msa0847010:three_prime_UTR | 20.0% |
| ! | TGTTAATTCTAAATGGAAAG+AGG | + | chr5_4:28230276-28230295 | Msa0847010:intron | 25.0% |
| !!! | CTTGATGATATTTTTAGTCA+TGG | + | chr5_4:28230313-28230332 | Msa0847010:intron | 25.0% |
| ! | AATTTGAGCCAAAAAATAGT+TGG | - | chr5_4:28230498-28230517 | None:intergenic | 25.0% |
| !!! | GCTTTCTTTACACAATTTTT+TGG | - | chr5_4:28230570-28230589 | None:intergenic | 25.0% |
| !!! | TCTTATTTGGTTTTTAGGAA+GGG | - | chr5_4:28230692-28230711 | None:intergenic | 25.0% |
| !!! | CAAACTCTTATTTGGTTTTT+AGG | - | chr5_4:28230697-28230716 | None:intergenic | 25.0% |
| ! | TTTGCATTCAAACTCTTATT+TGG | - | chr5_4:28230705-28230724 | None:intergenic | 25.0% |
| ! | GTTGAAAAATACGAAAGAAA+TGG | - | chr5_4:28230815-28230834 | None:intergenic | 25.0% |
| ! | ACATAATTTAATCGATATGG+TGG | - | chr5_4:28230956-28230975 | None:intergenic | 25.0% |
| ! | GTGACATAATTTAATCGATA+TGG | - | chr5_4:28230959-28230978 | None:intergenic | 25.0% |
| !! | ACTTTCTCTTGTAAGTTTTA+AGG | + | chr5_4:28231028-28231047 | Msa0847010:intron | 25.0% |
| ! | AAGGTTCATACAAATACATT+TGG | + | chr5_4:28231047-28231066 | Msa0847010:intron | 25.0% |
| ! | TTCATACAAATACATTTGGA+CGG | + | chr5_4:28231051-28231070 | Msa0847010:intron | 25.0% |
| ! | ATGAAAAACATTCAACTTGT+AGG | + | chr5_4:28231279-28231298 | Msa0847010:intron | 25.0% |
| !! | AATCTCTCATGCTTTTAATA+AGG | + | chr5_4:28231381-28231400 | Msa0847010:intron | 25.0% |
| ! | TAATAAGGCAAACAATAAGA+CGG | + | chr5_4:28231396-28231415 | Msa0847010:intron | 25.0% |
| ! | AAAAAAATCTGTTGCATTCT+TGG | + | chr5_4:28231488-28231507 | Msa0847010:intron | 25.0% |
| ! | CATAGTTCCTAAAAAATGAT+TGG | - | chr5_4:28231681-28231700 | None:intergenic | 25.0% |
| ! | AGTCCTTAAAAACTAAAACA+GGG | + | chr5_4:28231895-28231914 | Msa0847010:intron | 25.0% |
| !!! | TAGTGCCTTTTTAAGTATTT+TGG | + | chr5_4:28231950-28231969 | Msa0847010:intron | 25.0% |
| !!! | AGTGCCTTTTTAAGTATTTT+GGG | + | chr5_4:28231951-28231970 | Msa0847010:intron | 25.0% |
| ! | AGTCCTTAAAAACTAAAACA+GGG | + | chr5_4:28231895-28231914 | Msa0847010:intron | 25.0% |
| !!! | CTTTTTTATTTGTGATTGTC+AGG | - | chr5_4:28232045-28232064 | None:intergenic | 25.0% |
| ! | CTGACAATCACAAATAAAAA+AGG | + | chr5_4:28232043-28232062 | Msa0847010:intron | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | chr5_4:28232151-28232170 | Msa0847010:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | chr5_4:28232152-28232171 | Msa0847010:intron | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | + | chr5_4:28232215-28232234 | Msa0847010:intron | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | + | chr5_4:28232216-28232235 | Msa0847010:intron | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | + | chr5_4:28232274-28232293 | Msa0847010:intron | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | + | chr5_4:28232275-28232294 | Msa0847010:intron | 25.0% |
| ! | GTCATCCAAAAAATAATTCA+AGG | - | chr5_4:28232774-28232793 | None:intergenic | 25.0% |
| !! | TATCACAACCAATCATATTT+TGG | + | chr5_4:28232961-28232980 | Msa0847010:intron | 25.0% |
| !! | GATGCTTATTCTTATCTTTT+CGG | - | chr5_4:28233045-28233064 | None:intergenic | 25.0% |
| !! | AATCATTTCTGATTTTGTCT+TGG | + | chr5_4:28233152-28233171 | Msa0847010:intron | 25.0% |
| !! | CCTGGAAAAATAACATATTT+TGG | - | chr5_4:28233207-28233226 | None:intergenic | 25.0% |
| !!! | CCAAAATATGTTATTTTTCC+AGG | + | chr5_4:28233204-28233223 | Msa0847010:intron | 25.0% |
| !!! | AAATATGTTATTTTTCCAGG+GGG | + | chr5_4:28233207-28233226 | Msa0847010:intron | 25.0% |
| ! | ACTTTGAATGAAGAAAGTAA+AGG | + | chr5_4:28233242-28233261 | Msa0847010:CDS | 25.0% |
| ! | AAAGTAAAGGTAACAATACT+TGG | + | chr5_4:28233255-28233274 | Msa0847010:intron | 25.0% |
| !!! | TTTTCTGAGATTGTCTTAAA+TGG | + | chr5_4:28233285-28233304 | Msa0847010:intron | 25.0% |
| ! | TACATAAACAGATGATTCAA+AGG | + | chr5_4:28233336-28233355 | Msa0847010:intron | 25.0% |
| ! | TGAGAAAAAAAGATCCATTA+AGG | + | chr5_4:28233420-28233439 | Msa0847010:CDS | 25.0% |
| !!! | ACGATTGTAGTTTTAAACTT+TGG | - | chr5_4:28233508-28233527 | None:intergenic | 25.0% |
| !! | TTTTATTCAGATACTCCATT+CGG | + | chr5_4:28234072-28234091 | Msa0847010:intron | 25.0% |
| ! | AACTATTCATTCAACTTGAA+AGG | + | chr5_4:28234326-28234345 | Msa0847010:three_prime_UTR | 25.0% |
| ! | AACCAAGAAAGTAAACTTAT+TGG | + | chr5_4:28234375-28234394 | Msa0847010:three_prime_UTR | 25.0% |
| !!! | TTGGTCGTTTTAATATTTTG+TGG | + | chr5_4:28234394-28234413 | Msa0847010:three_prime_UTR | 25.0% |
| !!! | TGGTCGTTTTAATATTTTGT+GGG | + | chr5_4:28234395-28234414 | Msa0847010:three_prime_UTR | 25.0% |
| !!! | TCCTTCATCCAACTATTTTT+TGG | + | chr5_4:28230487-28230506 | Msa0847010:intron | 30.0% |
| ACGGAAAAACGATAAATACA+AGG | + | chr5_4:28230600-28230619 | Msa0847010:intron | 30.0% | |
| TACAAGGTACAGTATATATG+CGG | + | chr5_4:28230616-28230635 | Msa0847010:intron | 30.0% | |
| !!! | CTCTTATTTGGTTTTTAGGA+AGG | - | chr5_4:28230693-28230712 | None:intergenic | 30.0% |
| AAAACAGAGAGAAAATAAGC+TGG | + | chr5_4:28230728-28230747 | Msa0847010:intron | 30.0% | |
| ! | TTTTTCCACTTTCTTCTTTG+TGG | + | chr5_4:28230771-28230790 | Msa0847010:intron | 30.0% |
| ! | TTTTCCACTTTCTTCTTTGT+GGG | + | chr5_4:28230772-28230791 | Msa0847010:intron | 30.0% |
| AAAAACATTCAACTTGTAGG+AGG | + | chr5_4:28231282-28231301 | Msa0847010:intron | 30.0% | |
| AATAAGGCAAACAATAAGAC+GGG | + | chr5_4:28231397-28231416 | Msa0847010:intron | 30.0% | |
| !!! | TCACTCTCCAATCATTTTTT+AGG | + | chr5_4:28231671-28231690 | Msa0847010:intron | 30.0% |
| CAGTCCTTAAAAACTAAAAC+AGG | + | chr5_4:28231894-28231913 | Msa0847010:intron | 30.0% | |
| !!! | ACTCCCTGTTTTAGTTTTTA+AGG | - | chr5_4:28231901-28231920 | None:intergenic | 30.0% |
| !!! | GTGCCTTTTTAAGTATTTTG+GGG | + | chr5_4:28231952-28231971 | Msa0847010:intron | 30.0% |
| CAGTCCTTAAAAACTAAAAC+AGG | + | chr5_4:28231894-28231913 | Msa0847010:intron | 30.0% | |
| TTAGGGACCAAAAATGTTTA+TGG | + | chr5_4:28232169-28232188 | Msa0847010:intron | 30.0% | |
| ATAGGGACTAAAAATGTTGA+TGG | + | chr5_4:28232233-28232252 | Msa0847010:intron | 30.0% | |
| TCAAGTATAGCTGTTGTTAT+AGG | + | chr5_4:28232624-28232643 | Msa0847010:CDS | 30.0% | |
| !!! | CTTTTTGTTTTGATTGTGAC+AGG | + | chr5_4:28232743-28232762 | Msa0847010:intron | 30.0% |
| TGATAATAAGACTAAGCTCA+AGG | + | chr5_4:28232886-28232905 | Msa0847010:CDS | 30.0% | |
| AGTGAAGTCCAAAATATGAT+TGG | - | chr5_4:28232972-28232991 | None:intergenic | 30.0% | |
| ! | ATGTAATAAAGGGCATGAAT+AGG | - | chr5_4:28233321-28233340 | None:intergenic | 30.0% |
| TAGAAAAATGCAGACAAACA+CGG | + | chr5_4:28233555-28233574 | Msa0847010:intron | 30.0% | |
| TCATCATTGAAGGCTTATTT+GGG | + | chr5_4:28233860-28233879 | Msa0847010:CDS | 30.0% | |
| TGCTTATATTTAAGTCCGAA+TGG | - | chr5_4:28234090-28234109 | None:intergenic | 30.0% | |
| GTGAGTATAGAAAATCATCA+AGG | + | chr5_4:28234199-28234218 | Msa0847010:CDS | 30.0% | |
| GACCAATAAGTTTACTTTCT+TGG | - | chr5_4:28234380-28234399 | None:intergenic | 30.0% | |
| TGATTCATGATTTATACAGG+AGG | + | chr5_4:28234426-28234445 | Msa0847010:three_prime_UTR | 30.0% | |
| ATGATTTATACAGGAGGAAT+TGG | + | chr5_4:28234432-28234451 | Msa0847010:three_prime_UTR | 30.0% | |
| CTGTGATGACTTTATTGGAA+AGG | + | chr5_4:28230099-28230118 | Msa0847010:CDS | 35.0% | |
| ATGACTTTATTGGAAAGGAG+AGG | + | chr5_4:28230104-28230123 | Msa0847010:CDS | 35.0% | |
| GTTATCATTGCTTTCACCTT+TGG | + | chr5_4:28230182-28230201 | Msa0847010:CDS | 35.0% | |
| GAAAGTTGAGACAAGAAGTT+AGG | - | chr5_4:28230227-28230246 | None:intergenic | 35.0% | |
| CAGCTTATAATAGCAAAGAG+AGG | + | chr5_4:28230439-28230458 | Msa0847010:intron | 35.0% | |
| GCCAAAAAATAGTTGGATGA+AGG | - | chr5_4:28230491-28230510 | None:intergenic | 35.0% | |
| ! | GTGTAAAGAAAGCACAAACT+TGG | + | chr5_4:28230577-28230596 | Msa0847010:intron | 35.0% |
| ! | AAAGAAAGCACAAACTTGGA+CGG | + | chr5_4:28230581-28230600 | Msa0847010:intron | 35.0% |
| CAACCTCTATCGTATATATG+TGG | + | chr5_4:28230654-28230673 | Msa0847010:intron | 35.0% | |
| GTTCCACATATATACGATAG+AGG | - | chr5_4:28230660-28230679 | None:intergenic | 35.0% | |
| !!! | TTTTTAGGAAGGGTGTTTTG+AGG | - | chr5_4:28230682-28230701 | None:intergenic | 35.0% |
| ! | GAAAGTGGAAAAACCTGTTT+TGG | - | chr5_4:28230764-28230783 | None:intergenic | 35.0% |
| !! | ATACGAAAGAAATGGGTTGA+GGG | - | chr5_4:28230807-28230826 | None:intergenic | 35.0% |
| !! | AATACGAAAGAAATGGGTTG+AGG | - | chr5_4:28230808-28230827 | None:intergenic | 35.0% |
| ATAAGGCAAACAATAAGACG+GGG | + | chr5_4:28231398-28231417 | Msa0847010:intron | 35.0% | |
| ATGTAGCAAAAAACTGAGAG+TGG | + | chr5_4:28231433-28231452 | Msa0847010:intron | 35.0% | |
| AAAAAACTGAGAGTGGAGTA+TGG | + | chr5_4:28231440-28231459 | Msa0847010:intron | 35.0% | |
| AAAAACTGAGAGTGGAGTAT+GGG | + | chr5_4:28231441-28231460 | Msa0847010:intron | 35.0% | |
| TTCCCCTCTTCTATGTATAT+GGG | + | chr5_4:28231719-28231738 | Msa0847010:intron | 35.0% | |
| GATAAATTGCTCTGCTTCAT+TGG | + | chr5_4:28231816-28231835 | Msa0847010:intron | 35.0% | |
| !!! | TGGCCCTGTTTTAGTTTTTA+AGG | - | chr5_4:28232003-28232022 | None:intergenic | 35.0% |
| GGTCGTCTTAACAAATTTGT+TGG | - | chr5_4:28232023-28232042 | None:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | chr5_4:28232147-28232166 | None:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | chr5_4:28232148-28232167 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | chr5_4:28232161-28232180 | None:intergenic | 35.0% | |
| TGGACAAATTTCCAATGCTA+AGG | - | chr5_4:28232554-28232573 | None:intergenic | 35.0% | |
| ATATAGATACCCCCTCTTAA+TGG | + | chr5_4:28232664-28232683 | Msa0847010:intron | 35.0% | |
| !!! | AAAGCTGAGATACTTTTTCC+AGG | + | chr5_4:28232803-28232822 | Msa0847010:CDS | 35.0% |
| !!! | TTTTTGGTTGCGGTTTGTTT+AGG | + | chr5_4:28232836-28232855 | Msa0847010:CDS | 35.0% |
| ! | CATGATTTTGTTCTGTTTCC+AGG | + | chr5_4:28233064-28233083 | Msa0847010:intron | 35.0% |
| GATTCAAAGGATCTAGAGAA+TGG | + | chr5_4:28233349-28233368 | Msa0847010:CDS | 35.0% | |
| AGTTCGCGAAAATTTCAATG+AGG | - | chr5_4:28233458-28233477 | None:intergenic | 35.0% | |
| CTGCAAATGGTTTAACACAA+CGG | - | chr5_4:28233603-28233622 | None:intergenic | 35.0% | |
| TTAAACCATTTGCAGGTGTT+TGG | + | chr5_4:28233608-28233627 | Msa0847010:intron | 35.0% | |
| !! | TTTGGAAAGAGCACTTTCAT+TGG | + | chr5_4:28233626-28233645 | Msa0847010:CDS | 35.0% |
| !! | AAAGAGCACTTTCATTGGAT+TGG | + | chr5_4:28233631-28233650 | Msa0847010:CDS | 35.0% |
| TTGGCTATAACTTTCTTTGC+AGG | + | chr5_4:28233650-28233669 | Msa0847010:CDS | 35.0% | |
| ATTGAATGCTGGTGAGAATA+GGG | - | chr5_4:28233687-28233706 | None:intergenic | 35.0% | |
| AATTGAATGCTGGTGAGAAT+AGG | - | chr5_4:28233688-28233707 | None:intergenic | 35.0% | |
| ATTCTCACCAGCATTCAATT+TGG | + | chr5_4:28233688-28233707 | Msa0847010:CDS | 35.0% | |
| TTTGTTGCCAAATTGAATGC+TGG | - | chr5_4:28233698-28233717 | None:intergenic | 35.0% | |
| AGTGGCACACTTTAGATAAA+GGG | + | chr5_4:28233723-28233742 | Msa0847010:CDS | 35.0% | |
| ! | GAAGGTGATGTTTAGAATGA+TGG | - | chr5_4:28233810-28233829 | None:intergenic | 35.0% |
| ACTTAGGTAAGTTCAAGACA+GGG | - | chr5_4:28233841-28233860 | None:intergenic | 35.0% | |
| CTTACCTAAGTCATCATTGA+AGG | + | chr5_4:28233850-28233869 | Msa0847010:CDS | 35.0% | |
| TAAGCCTTCAATGATGACTT+AGG | - | chr5_4:28233857-28233876 | None:intergenic | 35.0% | |
| GTCATCATTGAAGGCTTATT+TGG | + | chr5_4:28233859-28233878 | Msa0847010:CDS | 35.0% | |
| ! | ACATAACTTTTCTCTCAGTG+AGG | + | chr5_4:28234030-28234049 | Msa0847010:intron | 35.0% |
| AGGAGAACATATACATTGCT+TGG | + | chr5_4:28234219-28234238 | Msa0847010:CDS | 35.0% | |
| GGAGAACATATACATTGCTT+GGG | + | chr5_4:28234220-28234239 | Msa0847010:CDS | 35.0% | |
| ! | ATGTATATGGTGGAGAGCAA+GGG | + | chr5_4:28230023-28230042 | Msa0847010:CDS | 40.0% |
| !! | CTGGTTTCCTTGTTGTTCTT+GGG | + | chr5_4:28230065-28230084 | Msa0847010:CDS | 40.0% |
| !! | TGGTTTCCTTGTTGTTCTTG+GGG | + | chr5_4:28230066-28230085 | Msa0847010:CDS | 40.0% |
| TCCAATAAAGTCATCACAGC+TGG | - | chr5_4:28230098-28230117 | None:intergenic | 40.0% | |
| TAGTCAAGATAGGTGTGTTG+AGG | - | chr5_4:28230137-28230156 | None:intergenic | 40.0% | |
| ! | AGTGATGGTGTAGTCAAGAT+AGG | - | chr5_4:28230147-28230166 | None:intergenic | 40.0% |
| CTACACCATCACTAATCTCT+TGG | + | chr5_4:28230154-28230173 | Msa0847010:CDS | 40.0% | |
| GCTTTCACCTTTGGTCAAAT+AGG | + | chr5_4:28230191-28230210 | Msa0847010:CDS | 40.0% | |
| ATCAGTGCCTATTTGACCAA+AGG | - | chr5_4:28230201-28230220 | None:intergenic | 40.0% | |
| CTTCTTGTCTCAACTTTCTC+AGG | + | chr5_4:28230229-28230248 | Msa0847010:CDS | 40.0% | |
| TTGTCTCAACTTTCTCAGGT+AGG | + | chr5_4:28230233-28230252 | Msa0847010:intron | 40.0% | |
| TGGCAAAGAGAATCCAAAAC+AGG | + | chr5_4:28230748-28230767 | Msa0847010:intron | 40.0% | |
| ATGACCCACAAAGAAGAAAG+TGG | - | chr5_4:28230779-28230798 | None:intergenic | 40.0% | |
| CACTTAGTGCAATTGACTAG+AGG | - | chr5_4:28230929-28230948 | None:intergenic | 40.0% | |
| AAAACTGAGAGTGGAGTATG+GGG | + | chr5_4:28231442-28231461 | Msa0847010:intron | 40.0% | |
| CTTCCCCTCTTCTATGTATA+TGG | + | chr5_4:28231718-28231737 | Msa0847010:intron | 40.0% | |
| TCCCCTCTTCTATGTATATG+GGG | + | chr5_4:28231720-28231739 | Msa0847010:intron | 40.0% | |
| AACCACACACTCTGTAATCA+AGG | - | chr5_4:28231848-28231867 | None:intergenic | 40.0% | |
| ATTACAGAGTGTGTGGTTGT+GGG | + | chr5_4:28231850-28231869 | Msa0847010:intron | 40.0% | |
| GGGCCCCAAAATACTTAAAA+AGG | - | chr5_4:28231958-28231977 | None:intergenic | 40.0% | |
| TACAGGGACTATAATGCTGA+TGG | + | chr5_4:28232201-28232220 | Msa0847010:intron | 40.0% | |
| GAATGTGTGATGTTTGATGC+AGG | + | chr5_4:28232485-28232504 | Msa0847010:intron | 40.0% | |
| GCCTTCTGTTCTATTTGCAA+TGG | + | chr5_4:28232515-28232534 | Msa0847010:CDS | 40.0% | |
| GCCATTGCAAATAGAACAGA+AGG | - | chr5_4:28232519-28232538 | None:intergenic | 40.0% | |
| TCTGTTCTATTTGCAATGGC+TGG | + | chr5_4:28232519-28232538 | Msa0847010:CDS | 40.0% | |
| TTCTATTTGCAATGGCTGGT+GGG | + | chr5_4:28232523-28232542 | Msa0847010:CDS | 40.0% | |
| ATTTGTCCACTCAGTATGCT+TGG | + | chr5_4:28232565-28232584 | Msa0847010:CDS | 40.0% | |
| TTTGTCCACTCAGTATGCTT+GGG | + | chr5_4:28232566-28232585 | Msa0847010:CDS | 40.0% | |
| ACCTCTCATTGCCATTAAGA+GGG | - | chr5_4:28232678-28232697 | None:intergenic | 40.0% | |
| AACCTCTCATTGCCATTAAG+AGG | - | chr5_4:28232679-28232698 | None:intergenic | 40.0% | |
| !!! | GAGATACTTTTTCCAGGAGT+TGG | + | chr5_4:28232809-28232828 | Msa0847010:CDS | 40.0% |
| !!! | AGTTGGTTGCTTTTTGGTTG+CGG | + | chr5_4:28232826-28232845 | Msa0847010:CDS | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr5_4:28233104-28233123 | None:intergenic | 40.0% | |
| AGCAACTATAATGGCGCATT+TGG | - | chr5_4:28233131-28233150 | None:intergenic | 40.0% | |
| AGTAGAATAATTAGTCCCCC+TGG | - | chr5_4:28233225-28233244 | None:intergenic | 40.0% | |
| AAATACTGCAGTTCCTGCTT+TGG | - | chr5_4:28233389-28233408 | None:intergenic | 40.0% | |
| GGAATAATGACTCGCCTTAA+TGG | - | chr5_4:28233437-28233456 | None:intergenic | 40.0% | |
| CGTTGTGTTAAACCATTTGC+AGG | + | chr5_4:28233601-28233620 | Msa0847010:intron | 40.0% | |
| TCTTTCCAAACACCTGCAAA+TGG | - | chr5_4:28233616-28233635 | None:intergenic | 40.0% | |
| ATTTGGCAACAAATGACCAG+TGG | + | chr5_4:28233705-28233724 | Msa0847010:CDS | 40.0% | |
| ! | CTTTATCTAAAGTGTGCCAC+TGG | - | chr5_4:28233724-28233743 | None:intergenic | 40.0% |
| CAGTGGCACACTTTAGATAA+AGG | + | chr5_4:28233722-28233741 | Msa0847010:CDS | 40.0% | |
| GTGGCACACTTTAGATAAAG+GGG | + | chr5_4:28233724-28233743 | Msa0847010:CDS | 40.0% | |
| GCAGTGTAAACACTCAAATG+GGG | - | chr5_4:28233752-28233771 | None:intergenic | 40.0% | |
| GGCAGTGTAAACACTCAAAT+GGG | - | chr5_4:28233753-28233772 | None:intergenic | 40.0% | |
| AGGCAGTGTAAACACTCAAA+TGG | - | chr5_4:28233754-28233773 | None:intergenic | 40.0% | |
| GACTTAGGTAAGTTCAAGAC+AGG | - | chr5_4:28233842-28233861 | None:intergenic | 40.0% | |
| TGAAGGCTTATTTGGGAGAT+TGG | + | chr5_4:28233867-28233886 | Msa0847010:CDS | 40.0% | |
| GCTTATTTGGGAGATTGGAA+TGG | + | chr5_4:28233872-28233891 | Msa0847010:CDS | 40.0% | |
| TGGGAATGGCCTTCAATTTA+TGG | + | chr5_4:28233934-28233953 | Msa0847010:CDS | 40.0% | |
| GGGAATGGCCTTCAATTTAT+GGG | + | chr5_4:28233935-28233954 | Msa0847010:CDS | 40.0% | |
| AATGGCCTTCAATTTATGGG+TGG | + | chr5_4:28233938-28233957 | Msa0847010:CDS | 40.0% | |
| CTTGACCACCCATAAATTGA+AGG | - | chr5_4:28233946-28233965 | None:intergenic | 40.0% | |
| GGAAACCAGCATGCATACTA+TGG | - | chr5_4:28230054-28230073 | None:intergenic | 45.0% | |
| !! | GCTGGTTTCCTTGTTGTTCT+TGG | + | chr5_4:28230064-28230083 | Msa0847010:CDS | 45.0% |
| GCCAGCTGTGATGACTTTAT+TGG | + | chr5_4:28230094-28230113 | Msa0847010:CDS | 45.0% | |
| AGCAGCCAAGAGATTAGTGA+TGG | - | chr5_4:28230162-28230181 | None:intergenic | 45.0% | |
| AAACTGAGAGTGGAGTATGG+GGG | + | chr5_4:28231443-28231462 | Msa0847010:intron | 45.0% | |
| GCCCCATATACATAGAAGAG+GGG | - | chr5_4:28231724-28231743 | None:intergenic | 45.0% | |
| GGCCCCATATACATAGAAGA+GGG | - | chr5_4:28231725-28231744 | None:intergenic | 45.0% | |
| CTCCTTGATTACAGAGTGTG+TGG | + | chr5_4:28231843-28231862 | Msa0847010:intron | 45.0% | |
| GATTACAGAGTGTGTGGTTG+TGG | + | chr5_4:28231849-28231868 | Msa0847010:intron | 45.0% | |
| GTTCTATTTGCAATGGCTGG+TGG | + | chr5_4:28232522-28232541 | Msa0847010:CDS | 45.0% | |
| TCTATTTGCAATGGCTGGTG+GGG | + | chr5_4:28232524-28232543 | Msa0847010:CDS | 45.0% | |
| AAAAGCCCAAGCATACTGAG+TGG | - | chr5_4:28232574-28232593 | None:intergenic | 45.0% | |
| ! | CAGTATGCTTGGGCTTTTGT+TGG | + | chr5_4:28232576-28232595 | Msa0847010:CDS | 45.0% |
| CTCTCATTGCCATTAAGAGG+GGG | - | chr5_4:28232676-28232695 | None:intergenic | 45.0% | |
| CCTCTCATTGCCATTAAGAG+GGG | - | chr5_4:28232677-28232696 | None:intergenic | 45.0% | |
| !!! | TCCAGGAGTTGGTTGCTTTT+TGG | + | chr5_4:28232820-28232839 | Msa0847010:CDS | 45.0% |
| ACCAAAAAGCAACCAACTCC+TGG | - | chr5_4:28232824-28232843 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr5_4:28233097-28233116 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr5_4:28233098-28233117 | None:intergenic | 45.0% | |
| AGTGCAAACAAAGCCAAAGC+AGG | + | chr5_4:28233373-28233392 | Msa0847010:CDS | 45.0% | |
| AGTTCAAGACAGGGTGGTAA+AGG | - | chr5_4:28233832-28233851 | None:intergenic | 45.0% | |
| TAGGTAAGTTCAAGACAGGG+TGG | - | chr5_4:28233838-28233857 | None:intergenic | 45.0% | |
| TTGGGAGATTGGAATGGTAG+AGG | + | chr5_4:28233878-28233897 | Msa0847010:CDS | 45.0% | |
| AGATTGGAATGGTAGAGGCT+GGG | + | chr5_4:28233883-28233902 | Msa0847010:CDS | 45.0% | |
| CTGGTCTCCTTTGTGGATTT+GGG | + | chr5_4:28233915-28233934 | Msa0847010:CDS | 45.0% | |
| CTCCTTTGTGGATTTGGGAA+TGG | + | chr5_4:28233920-28233939 | Msa0847010:CDS | 45.0% | |
| !! | TGAAGGAGTGTTGTTTGTGC+AGG | + | chr5_4:28234134-28234153 | Msa0847010:intron | 45.0% |
| TTCCACTTGTGAGCACTTTC+TGG | + | chr5_4:28234160-28234179 | Msa0847010:CDS | 45.0% | |
| TCCACTTGTGAGCACTTTCT+GGG | + | chr5_4:28234161-28234180 | Msa0847010:CDS | 45.0% | |
| !!! | TTCTGGGGCGTTGTTTTGTT+TGG | + | chr5_4:28234177-28234196 | Msa0847010:CDS | 45.0% |
| !! | TTATTATTAATAAATTATAC+TGG | - | chr5_4:28232702-28232721 | None:intergenic | 5.0% |
| ! | TATATGGTGGAGAGCAAGGG+AGG | + | chr5_4:28230026-28230045 | Msa0847010:CDS | 50.0% |
| ! | AGGTGCCATAGTATGCATGC+TGG | + | chr5_4:28230046-28230065 | Msa0847010:CDS | 50.0% |
| CCATGTCCCCAAGAACAACA+AGG | - | chr5_4:28230075-28230094 | None:intergenic | 50.0% | |
| !! | CCTTGTTGTTCTTGGGGACA+TGG | + | chr5_4:28230072-28230091 | Msa0847010:CDS | 50.0% |
| TGTGTTCAGACTGAGCAGTG+CGG | - | chr5_4:28231318-28231337 | None:intergenic | 50.0% | |
| GGGCCCCATATACATAGAAG+AGG | - | chr5_4:28231726-28231745 | None:intergenic | 50.0% | |
| CCCCTCTTAATGGCAATGAG+AGG | + | chr5_4:28232674-28232693 | Msa0847010:intron | 50.0% | |
| CAAGACAGGGTGGTAAAGGA+AGG | - | chr5_4:28233828-28233847 | None:intergenic | 50.0% | |
| GAGATTGGAATGGTAGAGGC+TGG | + | chr5_4:28233882-28233901 | Msa0847010:CDS | 50.0% | |
| !! | TTGTTGGCTGGTCTCCTTTG+TGG | + | chr5_4:28233908-28233927 | Msa0847010:CDS | 50.0% |
| ! | GCTGGTCTCCTTTGTGGATT+TGG | + | chr5_4:28233914-28233933 | Msa0847010:CDS | 50.0% |
| GGCCATTCCCAAATCCACAA+AGG | - | chr5_4:28233925-28233944 | None:intergenic | 50.0% | |
| TTTATGGGTGGTCAAGCTGC+TGG | + | chr5_4:28233950-28233969 | Msa0847010:CDS | 50.0% | |
| CCACTTGTGAGCACTTTCTG+GGG | + | chr5_4:28234162-28234181 | Msa0847010:CDS | 50.0% | |
| GGTGGGGTTGTCCTTAGCAT+TGG | + | chr5_4:28232540-28232559 | Msa0847010:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr5_4:28233085-28233104 | None:intergenic | 55.0% | |
| ! | TGGTAGAGGCTGGGCATTGT+TGG | + | chr5_4:28233892-28233911 | Msa0847010:CDS | 55.0% |
| !! | CCCCAGAAAGTGCTCACAAG+TGG | - | chr5_4:28234165-28234184 | None:intergenic | 55.0% |
| TGCTGCTGTTGCTGTGCTCA+TGG | + | chr5_4:28234263-28234282 | Msa0847010:CDS | 55.0% | |
| CTGTGCTCATGGCATCGTCT+GGG | + | chr5_4:28234274-28234293 | Msa0847010:CDS | 55.0% | |
| ! | AGAGGCTGGGCATTGTTGGC+TGG | + | chr5_4:28233896-28233915 | Msa0847010:CDS | 60.0% |
| GCTGTGCTCATGGCATCGTC+TGG | + | chr5_4:28234273-28234292 | Msa0847010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 28230023 | 28234461 | 28230023 | ID=Msa0847010;Name=Msa0847010 |
| chr5_4 | mRNA | 28230023 | 28234461 | 28230023 | ID=Msa0847010-mRNA-1;Parent=Msa0847010;Name=Msa0847010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.83|0.71|1|1|1|7|153|400 |
| chr5_4 | exon | 28230023 | 28230250 | 28230023 | ID=Msa0847010-mRNA-1:exon:10695;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28232507 | 28232645 | 28232507 | ID=Msa0847010-mRNA-1:exon:10696;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28232765 | 28232939 | 28232765 | ID=Msa0847010-mRNA-1:exon:10697;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28233226 | 28233263 | 28233226 | ID=Msa0847010-mRNA-1:exon:10698;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28233347 | 28233441 | 28233347 | ID=Msa0847010-mRNA-1:exon:10699;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28233623 | 28233997 | 28233623 | ID=Msa0847010-mRNA-1:exon:10700;Parent=Msa0847010-mRNA-1 |
| chr5_4 | exon | 28234156 | 28234461 | 28234156 | ID=Msa0847010-mRNA-1:exon:10701;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28230023 | 28230250 | 28230023 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28232507 | 28232645 | 28232507 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28232765 | 28232939 | 28232765 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28233226 | 28233263 | 28233226 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28233347 | 28233441 | 28233347 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28233623 | 28233997 | 28233623 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | CDS | 28234156 | 28234308 | 28234156 | ID=Msa0847010-mRNA-1:cds;Parent=Msa0847010-mRNA-1 |
| chr5_4 | three_prime_UTR | 28234309 | 28234461 | 28234309 | ID=Msa0847010-mRNA-1:three_prime_utr;Parent=Msa0847010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
