AlfalfaGEDB | Msa0767370

M. sativa cultivar zhongmu-4 / Msa0767370

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823
PFAM: PF07168.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0767370	XP_003614096.1	97.000	400	9	1	1	400	1	397	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0767370	sp\|Q9ZQ89\|UPS2_ARATH	77.419	403	83	3	1	400	1	398	0.0	614

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0767370	G7JY00	97.000	400	9	1	1	400	1	397	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0767370	0.813725	2.213353e-51	-8.615850e-47
Msa0007470	Msa0767370	0.805234	1.472669e-49	-8.615850e-47
Msa0012710	Msa0767370	0.802065	6.694327e-49	-8.615850e-47
Msa0018070	Msa0767370	0.801384	9.234989e-49	-8.615850e-47
Msa0056060	Msa0767370	0.802210	6.250798e-49	-8.615850e-47
Msa0058310	Msa0767370	0.800732	1.255456e-48	-8.615850e-47
Msa0061500	Msa0767370	0.817278	3.583456e-52	-8.615850e-47
Msa0062490	Msa0767370	0.815820	7.598179e-52	-8.615850e-47
Msa0071250	Msa0767370	0.805260	1.454573e-49	-8.615850e-47
Msa0090970	Msa0767370	0.809178	2.151846e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0767370	MtrunA17_Chr5g0419251	97.000	400	9	1	1	400	1	397	787
Msa0767370	MtrunA17_Chr5g0419581	88.089	403	43	3	1	400	1	401	663
Msa0767370	MtrunA17_Chr5g0419571	81.975	405	64	3	1	400	27	427	643

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0767370	AT2G03530.2	77.419	403	83	3	1	400	1	398	0.0	614
Msa0767370	AT2G03530.1	77.419	403	83	3	1	400	1	398	0.0	614
Msa0767370	AT2G03590.2	76.250	400	85	2	1	400	1	390	0.0	603
Msa0767370	AT2G03590.1	76.250	400	85	2	1	400	1	390	0.0	603
Msa0767370	AT2G03530.4	77.165	381	79	3	1	378	1	376	0.0	581
Msa0767370	AT2G03520.1	68.395	405	119	3	1	400	1	401	0.0	538
Msa0767370	AT1G26440.3	67.237	409	117	4	1	400	9	409	0.0	526
Msa0767370	AT1G26440.2	67.237	409	117	4	1	400	9	409	0.0	526
Msa0767370	AT2G03530.5	76.730	318	69	2	83	400	1	313	1.27e-167	472
Msa0767370	AT2G03530.3	76.730	318	69	2	83	400	1	313	1.27e-167	472

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Find 102 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCCAAGCATACTGAG+TGG	0.720310	5_2:+30396460	None:intergenic
AAAATGATCATGCAACATAA+AGG	0.407531	5_2:-30394705	Msa0767370:exon
AAACACTGCAGTTCCTGCTT+TGG	0.374306	5_2:+30395700	None:intergenic
AACCATTCATTCAACTTGAA+AGG	0.493918	5_2:-30394681	Msa0767370:three_prime_UTR
AAGATTTATATAGGAGGATT+TGG	0.252370	5_2:-30394586	Msa0767370:three_prime_UTR
AATATAAACAGATGATTCAA+AGG	0.505153	5_2:-30395750	Msa0767370:intron
AATGAGCACTTTCATTGGAC+TGG	0.494731	5_2:-30395376	Msa0767370:CDS
AATGGCCTTCAATTTATGGG+AGG	0.654553	5_2:-30395069	Msa0767370:CDS
AATGTATATGGTGGAGAGCA+AGG	0.477899	5_2:-30399000	Msa0767370:CDS
AATTGAATGCTGGTGAGAAT+AGG	0.431496	5_2:+30395322	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGGAAAAACGATAAATACA+AGG	-	chr5_2:30395156-30395175	Msa0767370:CDS	30.0%
TACAAGGTACAGTATATATG+CGG	-	chr5_2:30395172-30395191	Msa0767370:CDS	30.0%
AACAGAGAGAAAAAATAAGC+TGG	-	chr5_2:30395286-30395305	Msa0767370:CDS	30.0%
AAAAACATTCAACTTGTAGG+AGG	-	chr5_2:30395839-30395858	Msa0767370:CDS	30.0%
AATAAGGCAAACAATAAGAC+GGG	-	chr5_2:30395954-30395973	Msa0767370:intron	30.0%
CAGTCCTTAAAAACTAAAAC+AGG	-	chr5_2:30396451-30396470	Msa0767370:CDS	30.0%
CAGTCCTTAAAAACTAAAAC+AGG	-	chr5_2:30396451-30396470	Msa0767370:CDS	30.0%
TTAGGGACCAAAAATGTTTA+TGG	-	chr5_2:30396727-30396746	Msa0767370:intron	30.0%
ATAGGGACTAAAAATGTTGA+TGG	-	chr5_2:30396791-30396810	Msa0767370:intron	30.0%
TCAAGTATAGCTGTTGTTAT+AGG	-	chr5_2:30397171-30397190	Msa0767370:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	30394579	30399021	30394579	ID=Msa0767370;Name=Msa0767370
chr5_2	mRNA	30394579	30399021	30394579	ID=Msa0767370-mRNA-1;Parent=Msa0767370;Name=Msa0767370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.83\|0.71\|1\|1\|1\|7\|142\|400
chr5_2	exon	30394579	30394873	30394579	ID=Msa0767370-mRNA-1:exon:11490;Parent=Msa0767370-mRNA-1
chr5_2	exon	30395032	30395406	30395032	ID=Msa0767370-mRNA-1:exon:11489;Parent=Msa0767370-mRNA-1
chr5_2	exon	30395667	30395761	30395667	ID=Msa0767370-mRNA-1:exon:11488;Parent=Msa0767370-mRNA-1
chr5_2	exon	30395832	30395869	30395832	ID=Msa0767370-mRNA-1:exon:11487;Parent=Msa0767370-mRNA-1
chr5_2	exon	30396114	30396288	30396114	ID=Msa0767370-mRNA-1:exon:11486;Parent=Msa0767370-mRNA-1
chr5_2	exon	30396408	30396546	30396408	ID=Msa0767370-mRNA-1:exon:11485;Parent=Msa0767370-mRNA-1
chr5_2	exon	30398794	30399021	30398794	ID=Msa0767370-mRNA-1:exon:11484;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30398794	30399021	30398794	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30396408	30396546	30396408	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30396114	30396288	30396114	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30395832	30395869	30395832	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30395667	30395761	30395667	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30395032	30395406	30395032	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	CDS	30394721	30394873	30394721	ID=Msa0767370-mRNA-1:cds;Parent=Msa0767370-mRNA-1
chr5_2	three_prime_UTR	30394579	30394720	30394579	ID=Msa0767370-mRNA-1:three_prime_utr;Parent=Msa0767370-mRNA-1

Gene Sequence

>Msa0767370

ATGTATATGGTGGAGAGCAAGGGAGGTGCCATAGTATGCATGCTGGTTTCCTTGTTGTTCTTGGGGACATGGCCAGCTGTGATGACTTTATTGGAAAGGAGAGGTCGTCTTCCTCAGCACACCTATCTTGACTACACCATCACTAATCTCTTGGCTGCTGTTATCATTGCTTTCACCTTTGGTCAAATTGGCACTGATCATCCTAACTTCTTGTCTCAACTTTCTCAGGATAACTTGCCTTCTGTTCTATTTGCAATGGCTGGTGGGGTTGTCCTTAGCATTGGAAATTTGTCCACTCAGTATGCTTGGGCTTTTGTTGGTTTATCAGTTGTTGAAGTTATCACATCAAGTATAGCTGTTGTTATAGGAACAACCTTGAATTATTTTTTGGATGACAAAATCAATAAAGCTGAGATTCTTTTTCCAGGAGTTGGTTGCTTTCTGGTTGCAGTTTGTTTAGGATCTGCTGTTCATTCATCTAATACTGCTGATAATAAGGCTAAGCTCAAGGATTTTTCAAGTCATCATAAAGATGTAGTTCAGGGGACTAATTTATCTACTTTGAATGAAGAAAGTAAAGATGATTCAAAGGATTTAGAGAATGGAAGTGCAAACAAAGCCAAAGCAGGAACTGCAGTGTTTCTTATAGAACTTGAGAAAAAAAGATCCATTAAGGTGTTTGGAATGAGCACTTTCATTGGACTGGCTATAACTTTCTTTGCAGGAGTTTGTTTCTCCCTATTCTCACCAGCATTCAATTTGGCAACAAATGACCAGTGGAACACTTTAGATAAAGGGGTTCCCCATTTAAGTGTTTATACTGCCTTCTTTTATTTTTCAGTCTCTTGTTTTGTTGTTGCCATCATTCTAAACATCACCTTCCTTTATCACCCTGTCTTGAACTTACCAAAATCATCATTGAAGGCTTATTTGGGAGATTGGAATGGTAGAGGTTGGGCATTGTTGGCTGGTCTACTTTGTGGATTTGGGAATGGCCTTCAATTTATGGGAGGACAAGCTGCTGGATATGCAGCAGCAGATGCTGTTCAAGCACTTCCACTTGTGAGCACTTTCTGGGGCGTTGTTTTGTTCGGCGAGTATAGAAAATCATCAAGGAGAACATATACATTGCTTGGGAGCATGTTGCTTATGTTCATTGCAGCTGTCGCAGTGCTCATGGCATCATCTGGGCACCGAAAATGA

Protein sequence

>Msa0767370

MYMVESKGGAIVCMLVSLLFLGTWPAVMTLLERRGRLPQHTYLDYTITNLLAAVIIAFTFGQIGTDHPNFLSQLSQDNLPSVLFAMAGGVVLSIGNLSTQYAWAFVGLSVVEVITSSIAVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHSSNTADNKAKLKDFSSHHKDVVQGTNLSTLNEESKDDSKDLENGSANKAKAGTAVFLIELEKKRSIKVFGMSTFIGLAITFFAGVCFSLFSPAFNLATNDQWNTLDKGVPHLSVYTAFFYFSVSCFVVAIILNITFLYHPVLNLPKSSLKAYLGDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVVLFGEYRKSSRRTYTLLGSMLLMFIAAVAVLMASSGHRK*