Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849500 | XP_003614714.1 | 97.661 | 171 | 4 | 0 | 1 | 171 | 82 | 252 | 3.42e-117 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849500 | sp|A7SL20|RRP36_NEMVE | 41.818 | 165 | 93 | 2 | 2 | 165 | 81 | 243 | 9.42e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849500 | G7JXB6 | 97.661 | 171 | 4 | 0 | 1 | 171 | 82 | 252 | 1.63e-117 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa0849500 | 0.817153 | 3.821723e-52 | -8.615850e-47 |
| Msa0146340 | Msa0849500 | 0.809314 | 2.011261e-50 | -8.615850e-47 |
| Msa0189320 | Msa0849500 | 0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0849500 | Msa0849510 | 0.928092 | 4.700287e-92 | -8.615850e-47 |
| Msa0849500 | Msa1043690 | 0.816449 | 5.497976e-52 | -8.615850e-47 |
| Msa0849500 | Msa1361100 | 0.810824 | 9.512885e-51 | -8.615850e-47 |
| Msa0849500 | Msa1374120 | 0.809200 | 2.128337e-50 | -8.615850e-47 |
| Msa0849500 | Msa1399530 | 0.814302 | 1.651133e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849500 | MtrunA17_Chr5g0423931 | 97.661 | 171 | 4 | 0 | 1 | 171 | 82 | 252 | 3.14e-121 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849500 | AT1G12650.1 | 60.355 | 169 | 66 | 1 | 1 | 168 | 80 | 248 | 1.89e-62 | 193 |
| Msa0849500 | AT1G12650.2 | 60.355 | 169 | 66 | 1 | 1 | 168 | 80 | 248 | 1.89e-62 | 193 |
| Msa0849500 | AT1G12650.3 | 60.355 | 169 | 66 | 1 | 1 | 168 | 80 | 248 | 1.89e-62 | 193 |
| Msa0849500 | AT1G12650.4 | 60.355 | 169 | 66 | 1 | 1 | 168 | 80 | 248 | 1.89e-62 | 193 |
Find 41 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTATATAACATTATTTC+TGG | 0.158881 | 5_4:+36566109 | None:intergenic |
| CTTACATTTCTTGAGATAAA+AGG | 0.173906 | 5_4:+36567835 | None:intergenic |
| GGATATTGAGACACAGATTT+TGG | 0.203869 | 5_4:-36567906 | Msa0849500:CDS |
| TGGGCGCTATCTTCCATTAC+AGG | 0.214191 | 5_4:+36566129 | None:intergenic |
| ACAATTAATCTGACCTTCTT+AGG | 0.235824 | 5_4:+36570323 | None:intergenic |
| TGGCATAACAGGCTCTTAAA+AGG | 0.329338 | 5_4:-36568108 | Msa0849500:intron |
| TCATCATCAAACCCCAAATA+TGG | 0.330261 | 5_4:+36566079 | None:intergenic |
| TTTCAACAAGCCTTTGCTTC+CGG | 0.346969 | 5_4:+36566392 | None:intergenic |
| TACGATATGGCATGAATCTA+TGG | 0.372533 | 5_4:+36566188 | None:intergenic |
| AGAGAGAGAAGCAGCAAAGC+AGG | 0.383818 | 5_4:-36567867 | Msa0849500:CDS |
| GTTGAACATTCTCCAAATCA+TGG | 0.396786 | 5_4:-36566050 | Msa0849500:three_prime_UTR |
| ACAACACAAAAGCCATGATT+TGG | 0.397491 | 5_4:+36566038 | None:intergenic |
| CCACGATTTGAGTCTCTTTG+CGG | 0.402540 | 5_4:-36569866 | Msa0849500:CDS |
| TTACATTATTTCAAAGGATC+AGG | 0.406244 | 5_4:+36565868 | None:intergenic |
| TTCTTGCTACTAGCTTCCAT+TGG | 0.434939 | 5_4:+36570380 | None:intergenic |
| TTACATTTCTTGAGATAAAA+GGG | 0.436036 | 5_4:+36567836 | None:intergenic |
| TCTATTTCACTTCTACGCTC+TGG | 0.442608 | 5_4:+36568064 | None:intergenic |
| ATGTATATAACATTATTTCT+GGG | 0.462708 | 5_4:+36566110 | None:intergenic |
| TTCATGCCATATCGTAGATC+TGG | 0.465483 | 5_4:-36566181 | Msa0849500:CDS |
| ACATCTCTAAAAGCAGGAAC+TGG | 0.481636 | 5_4:+36570356 | None:intergenic |
| GGCTGTTGTTAACCCTGTAA+TGG | 0.497557 | 5_4:-36566142 | Msa0849500:three_prime_UTR |
| GCGGTACATTTGACAATGAT+CGG | 0.498086 | 5_4:-36569847 | Msa0849500:intron |
| AAGCCTTTGCTTCCGGATCT+CGG | 0.499116 | 5_4:+36566399 | None:intergenic |
| GGAACATTACATTATTTCAA+AGG | 0.499208 | 5_4:+36565862 | None:intergenic |
| TGATCTTCCTGCTGAAAGAC+AGG | 0.502469 | 5_4:-36568209 | Msa0849500:intron |
| TCTGGTGAAAACGTGGAGTA+AGG | 0.502921 | 5_4:-36566163 | Msa0849500:exon |
| CAGCCGAGATCCGGAAGCAA+AGG | 0.510746 | 5_4:-36566402 | Msa0849500:CDS |
| AATCTGTGTCTCAATATCCT+TGG | 0.534048 | 5_4:+36567910 | None:intergenic |
| GAGAGAGAAGCAGCAAAGCA+GGG | 0.548569 | 5_4:-36567866 | Msa0849500:CDS |
| GGGCGCTATCTTCCATTACA+GGG | 0.554643 | 5_4:+36566130 | None:intergenic |
| TGAATGACATCTCTAAAAGC+AGG | 0.560062 | 5_4:+36570350 | None:intergenic |
| CTACCTACCTGTCTTTCAGC+AGG | 0.562589 | 5_4:+36568202 | None:intergenic |
| TGTCATTCAAGCTCCTAAGA+AGG | 0.563312 | 5_4:-36570336 | Msa0849500:intron |
| AAATAGAAGAGCGCATAGCA+TGG | 0.572976 | 5_4:-36568048 | Msa0849500:CDS |
| TTAGAATTATGAATTATCGT+AGG | 0.574452 | 5_4:-36565971 | Msa0849500:three_prime_UTR |
| GAGGAAGAGAAATGCTGCAA+AGG | 0.582512 | 5_4:-36566212 | Msa0849500:CDS |
| AATAGAAGAGCGCATAGCAT+GGG | 0.609808 | 5_4:-36568047 | Msa0849500:CDS |
| TCGTAGATCTGGTGAAAACG+TGG | 0.638393 | 5_4:-36566170 | Msa0849500:CDS |
| CCGCAAAGAGACTCAAATCG+TGG | 0.650639 | 5_4:+36569866 | None:intergenic |
| GTTGAAATCTGATTCAACCA+AGG | 0.667602 | 5_4:-36567927 | Msa0849500:CDS |
| GATTTGGAGAATGTTCAACA+AGG | 0.703850 | 5_4:+36566054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTCAATTAAAAGAA+TGG | - | chr5_4:36569563-36569582 | Msa0849500:intron | 10.0% |
| !! | TAGTAAATAGATAAAATTAA+GGG | + | chr5_4:36569916-36569935 | None:intergenic | 10.0% |
| !! | ATAGTAAATAGATAAAATTA+AGG | + | chr5_4:36569917-36569936 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAATAGGTTCAT+TGG | - | chr5_4:36567742-36567761 | Msa0849500:intron | 15.0% |
| !! | AAAGCTAATAAAATTAACAT+AGG | + | chr5_4:36568455-36568474 | None:intergenic | 15.0% |
| !! | ATAAAATAAAATTCCAACTA+TGG | - | chr5_4:36569739-36569758 | Msa0849500:intron | 15.0% |
| !!! | ATGTATATAACATTATTTCT+GGG | + | chr5_4:36570083-36570102 | None:intergenic | 15.0% |
| !! | AATGTATATAACATTATTTC+TGG | + | chr5_4:36570084-36570103 | None:intergenic | 15.0% |
| !!! | ACTAATTTTACATATGATAG+CGG | + | chr5_4:36566149-36566168 | None:intergenic | 20.0% |
| !! | ACTTAAAAAATGTACAAGTA+AGG | - | chr5_4:36566177-36566196 | Msa0849500:CDS | 20.0% |
| !! | CTTAAAAAATGTACAAGTAA+GGG | - | chr5_4:36566178-36566197 | Msa0849500:CDS | 20.0% |
| !!! | CAATTTCTGTTTTATATATC+TGG | - | chr5_4:36566248-36566267 | Msa0849500:CDS | 20.0% |
| !! | AAATTAACACAACAAGAAAA+AGG | + | chr5_4:36566401-36566420 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTATCATTTTGTA+AGG | + | chr5_4:36566717-36566736 | None:intergenic | 20.0% |
| !! | TGTATAAACCAAGAATTATA+TGG | + | chr5_4:36567193-36567212 | None:intergenic | 20.0% |
| !!! | TATACTTTTCTAGATTGTAA+TGG | - | chr5_4:36567786-36567805 | Msa0849500:intron | 20.0% |
| !! | CTAATAATAATACATGTACT+TGG | - | chr5_4:36567917-36567936 | Msa0849500:CDS | 20.0% |
| !! | ACTAATAAAAATTACACCTT+TGG | + | chr5_4:36568205-36568224 | None:intergenic | 20.0% |
| !! | TTACATTTCTTGAGATAAAA+GGG | + | chr5_4:36568357-36568376 | None:intergenic | 20.0% |
| !!! | TATTGAATGTCTCATATTTT+AGG | + | chr5_4:36568511-36568530 | None:intergenic | 20.0% |
| !!! | TACTTTTCGTTTTTAAATTG+TGG | - | chr5_4:36569044-36569063 | Msa0849500:intron | 20.0% |
| !! | AAAATATCATTATCCATAGT+TGG | + | chr5_4:36569755-36569774 | None:intergenic | 20.0% |
| !!! | CTATGGATAATGATATTTTT+TGG | - | chr5_4:36569756-36569775 | Msa0849500:intron | 20.0% |
| !! | TGAAAAATTTAATCATCTCA+AGG | - | chr5_4:36569816-36569835 | Msa0849500:intron | 20.0% |
| !! | AATCATATATTGAGAAAAAG+AGG | - | chr5_4:36569959-36569978 | Msa0849500:intron | 20.0% |
| !!! | TACATTTTGTATACCATATT+TGG | - | chr5_4:36570098-36570117 | Msa0849500:intron | 20.0% |
| !!! | ACATTTTGTATACCATATTT+GGG | - | chr5_4:36570099-36570118 | Msa0849500:intron | 20.0% |
| !! | TTAGAATTATGAATTATCGT+AGG | - | chr5_4:36570219-36570238 | Msa0849500:intron | 20.0% |
| !!! | ACTATTTTTAAAGACTAAAG+AGG | + | chr5_4:36570352-36570371 | None:intergenic | 20.0% |
| ! | AAAAAAACTACACAAGCTAA+TGG | + | chr5_4:36565999-36566018 | None:intergenic | 25.0% |
| !!! | ATTAGCTTGTGTAGTTTTTT+TGG | - | chr5_4:36565998-36566017 | Msa0849500:three_prime_UTR | 25.0% |
| !!! | TTAGCTTGTGTAGTTTTTTT+GGG | - | chr5_4:36565999-36566018 | Msa0849500:three_prime_UTR | 25.0% |
| ! | TACAACCTGAAAAATAATGA+AGG | + | chr5_4:36566298-36566317 | None:intergenic | 25.0% |
| ! | AAATACAGCAAAAATCAACA+TGG | + | chr5_4:36566495-36566514 | None:intergenic | 25.0% |
| !!! | TTTTAACTTTAACTAAGAGC+CGG | - | chr5_4:36566555-36566574 | Msa0849500:intron | 25.0% |
| ! | TAATTTCAATCTTGGACTAT+GGG | + | chr5_4:36566692-36566711 | None:intergenic | 25.0% |
| ! | TTAATTTCAATCTTGGACTA+TGG | + | chr5_4:36566693-36566712 | None:intergenic | 25.0% |
| ! | GTAAGGATTAATTTCAATCT+TGG | + | chr5_4:36566700-36566719 | None:intergenic | 25.0% |
| !!! | TATAATTTTTTCCTTGTCGT+TGG | - | chr5_4:36566742-36566761 | Msa0849500:intron | 25.0% |
| ! | AAAGAATAGTACATTGAGTT+GGG | + | chr5_4:36566797-36566816 | None:intergenic | 25.0% |
| ! | TAAAGAATAGTACATTGAGT+TGG | + | chr5_4:36566798-36566817 | None:intergenic | 25.0% |
| ! | ATTTCTTAAATACAGTGGAT+TGG | + | chr5_4:36566893-36566912 | None:intergenic | 25.0% |
| ! | ACAGTATTTCTTAAATACAG+TGG | + | chr5_4:36566898-36566917 | None:intergenic | 25.0% |
| ! | AGATAGTTCCATATAATTCT+TGG | - | chr5_4:36567182-36567201 | Msa0849500:intron | 25.0% |
| !!! | CAACTGTTTTTAACTTAATC+TGG | - | chr5_4:36567856-36567875 | Msa0849500:CDS | 25.0% |
| ! | GTATTATTATTAGTGCTACA+CGG | + | chr5_4:36567910-36567929 | None:intergenic | 25.0% |
| ! | ATAAAAATTACACCTTTGGA+CGG | + | chr5_4:36568201-36568220 | None:intergenic | 25.0% |
| ! | CTTACATTTCTTGAGATAAA+AGG | + | chr5_4:36568358-36568377 | None:intergenic | 25.0% |
| ! | AGATTGTACTTCTAACATAT+CGG | + | chr5_4:36568425-36568444 | None:intergenic | 25.0% |
| ! | AATATGAGACATTCAATATG+CGG | - | chr5_4:36568513-36568532 | Msa0849500:intron | 25.0% |
| ! | ATAGTTACCTCTTAATGAAT+AGG | - | chr5_4:36568859-36568878 | Msa0849500:intron | 25.0% |
| !! | TTTGTGTTCTTTTTCTACAT+TGG | - | chr5_4:36569251-36569270 | Msa0849500:intron | 25.0% |
| !!! | TCATTTTTAGGTTTATTCCT+AGG | + | chr5_4:36569398-36569417 | None:intergenic | 25.0% |
| ! | TAAACCTAAAAATGAGCTTA+AGG | - | chr5_4:36569403-36569422 | Msa0849500:intron | 25.0% |
| ! | AAACCTAAAAATGAGCTTAA+GGG | - | chr5_4:36569404-36569423 | Msa0849500:intron | 25.0% |
| !!! | AAAAGAATGGACTATATTGT+TGG | - | chr5_4:36569576-36569595 | Msa0849500:intron | 25.0% |
| ! | TCTCATTCACATGTTTATAT+GGG | - | chr5_4:36569621-36569640 | Msa0849500:intron | 25.0% |
| ! | TTATATGGGGAAATAGTTAT+CGG | - | chr5_4:36569635-36569654 | Msa0849500:intron | 25.0% |
| !! | ATTTACTATTTTCAGTCATC+TGG | - | chr5_4:36569928-36569947 | Msa0849500:intron | 25.0% |
| !! | CATTTTGTATACCATATTTG+GGG | - | chr5_4:36570100-36570119 | Msa0849500:intron | 25.0% |
| !! | GTTTTTGTCATTCACAAATT+AGG | - | chr5_4:36570241-36570260 | Msa0849500:intron | 25.0% |
| !!! | CAAATTAGGAATTTTGATGA+AGG | - | chr5_4:36570255-36570274 | Msa0849500:intron | 25.0% |
| ! | TTACATTATTTCAAAGGATC+AGG | + | chr5_4:36570325-36570344 | None:intergenic | 25.0% |
| ! | GGAACATTACATTATTTCAA+AGG | + | chr5_4:36570331-36570350 | None:intergenic | 25.0% |
| !!! | GTACACATTTTGAAAATCAT+GGG | + | chr5_4:36570383-36570402 | None:intergenic | 25.0% |
| !!! | AGTACACATTTTGAAAATCA+TGG | + | chr5_4:36570384-36570403 | None:intergenic | 25.0% |
| ACAATTAATCTGACCTTCTT+AGG | + | chr5_4:36565870-36565889 | None:intergenic | 30.0% | |
| !!! | TAGCTTGTGTAGTTTTTTTG+GGG | - | chr5_4:36566000-36566019 | Msa0849500:three_prime_UTR | 30.0% |
| TTTCCCTGTTAAACAAATTG+CGG | - | chr5_4:36566039-36566058 | Msa0849500:three_prime_UTR | 30.0% | |
| ! | AAGTTTAAGCATTTTCGTAC+CGG | - | chr5_4:36566462-36566481 | Msa0849500:intron | 30.0% |
| !! | AAATCAACATGGTTTTACAC+CGG | + | chr5_4:36566484-36566503 | None:intergenic | 30.0% |
| ! | TCTGAAACTCTTTCTTACTA+TGG | - | chr5_4:36566653-36566672 | Msa0849500:intron | 30.0% |
| CTGAAACTCTTTCTTACTAT+GGG | - | chr5_4:36566654-36566673 | Msa0849500:intron | 30.0% | |
| TGAAACTCTTTCTTACTATG+GGG | - | chr5_4:36566655-36566674 | Msa0849500:intron | 30.0% | |
| AAAAAGAATAACCAACGACA+AGG | + | chr5_4:36566756-36566775 | None:intergenic | 30.0% | |
| AAGCTGTTAGATAATACTGA+AGG | - | chr5_4:36566829-36566848 | Msa0849500:intron | 30.0% | |
| ATCAAATGATACAATAGCCA+AGG | + | chr5_4:36567032-36567051 | None:intergenic | 30.0% | |
| CATGCATATTATTTAGTCAG+CGG | - | chr5_4:36567128-36567147 | Msa0849500:intron | 30.0% | |
| TCGTTTATGTGGATATCATT+TGG | - | chr5_4:36567221-36567240 | Msa0849500:intron | 30.0% | |
| TTATGTGGATATCATTTGGT+TGG | - | chr5_4:36567225-36567244 | Msa0849500:intron | 30.0% | |
| !!! | CTGTTTTTTCTGGCTTTTTT+TGG | - | chr5_4:36567551-36567570 | Msa0849500:intron | 30.0% |
| AACTGTACAAGATACATCAA+AGG | + | chr5_4:36567682-36567701 | None:intergenic | 30.0% | |
| !! | ATTGGCGTTTTAGTAGATTT+TGG | - | chr5_4:36567760-36567779 | Msa0849500:intron | 30.0% |
| TAAAAATTACACCTTTGGAC+GGG | + | chr5_4:36568200-36568219 | None:intergenic | 30.0% | |
| GGGAGATAAAATTATGTTGA+AGG | + | chr5_4:36568389-36568408 | None:intergenic | 30.0% | |
| ATATCGGAAGTGATAGAAAA+GGG | + | chr5_4:36568409-36568428 | None:intergenic | 30.0% | |
| !! | CTTGTTGGTTTAATTCAGTT+GGG | - | chr5_4:36568783-36568802 | Msa0849500:intron | 30.0% |
| CATTAAGAGGTAACTATAGA+AGG | + | chr5_4:36568856-36568875 | None:intergenic | 30.0% | |
| TTACCTCTTAATGAATAGGA+GGG | - | chr5_4:36568863-36568882 | Msa0849500:intron | 30.0% | |
| CTTGTAGGTTTAATTCAGTT+GGG | - | chr5_4:36568919-36568938 | Msa0849500:intron | 30.0% | |
| TTCTCCTTTGATTACTCTTA+AGG | - | chr5_4:36568976-36568995 | Msa0849500:intron | 30.0% | |
| TCTCCTTTGATTACTCTTAA+GGG | - | chr5_4:36568977-36568996 | Msa0849500:intron | 30.0% | |
| TTTCTTTATTGTGCGAGAAT+GGG | + | chr5_4:36569231-36569250 | None:intergenic | 30.0% | |
| ATTTCTTTATTGTGCGAGAA+TGG | + | chr5_4:36569232-36569251 | None:intergenic | 30.0% | |
| AGTTAGTAACAATGCTCAAA+AGG | + | chr5_4:36569297-36569316 | None:intergenic | 30.0% | |
| CATTGTTACTAACTGTCTAA+GGG | - | chr5_4:36569303-36569322 | Msa0849500:intron | 30.0% | |
| !! | TAGAATTTTAGCGCTATTAG+TGG | + | chr5_4:36569488-36569507 | None:intergenic | 30.0% |
| CTCTCATTCACATGTTTATA+TGG | - | chr5_4:36569620-36569639 | Msa0849500:intron | 30.0% | |
| CTCATTCACATGTTTATATG+GGG | - | chr5_4:36569622-36569641 | Msa0849500:intron | 30.0% | |
| TATATGGGGAAATAGTTATC+GGG | - | chr5_4:36569636-36569655 | Msa0849500:intron | 30.0% | |
| ATACAGTTCTGTGAATATGA+AGG | - | chr5_4:36569662-36569681 | Msa0849500:intron | 30.0% | |
| CTGTGAATATGAAGGTTAAA+TGG | - | chr5_4:36569670-36569689 | Msa0849500:intron | 30.0% | |
| TACAATGCGGATAAAATGAA+GGG | + | chr5_4:36569870-36569889 | None:intergenic | 30.0% | |
| ATACAATGCGGATAAAATGA+AGG | + | chr5_4:36569871-36569890 | None:intergenic | 30.0% | |
| CAGTATGACATAATACAATG+CGG | + | chr5_4:36569883-36569902 | None:intergenic | 30.0% | |
| !!! | TTTACCAACAACCACTTTTT+TGG | - | chr5_4:36570188-36570207 | Msa0849500:intron | 30.0% |
| !!! | TTACCAACAACCACTTTTTT+GGG | - | chr5_4:36570189-36570208 | Msa0849500:intron | 30.0% |
| TAAAAATACCCCCAAAAAAG+TGG | + | chr5_4:36570202-36570221 | None:intergenic | 30.0% | |
| ! | TGAATGACATCTCTAAAAGC+AGG | + | chr5_4:36565843-36565862 | None:intergenic | 35.0% |
| TTCCCTGTTAAACAAATTGC+GGG | - | chr5_4:36566040-36566059 | Msa0849500:three_prime_UTR | 35.0% | |
| ! | ATCCCGCAATTTGTTTAACA+GGG | + | chr5_4:36566045-36566064 | None:intergenic | 35.0% |
| TCATATGTAGTTAAGACTCC+AGG | - | chr5_4:36566122-36566141 | Msa0849500:three_prime_UTR | 35.0% | |
| !! | GCATGCCTTCATTATTTTTC+AGG | - | chr5_4:36566290-36566309 | Msa0849500:intron | 35.0% |
| GAAAGACAATCAAAATCAGC+AGG | + | chr5_4:36566978-36566997 | None:intergenic | 35.0% | |
| ATGATACAATAGCCAAGGAA+AGG | + | chr5_4:36567027-36567046 | None:intergenic | 35.0% | |
| GCATTAGATATCCTCTGTTT+GGG | - | chr5_4:36567150-36567169 | Msa0849500:intron | 35.0% | |
| TGATATCCACATAAACGACA+TGG | + | chr5_4:36567219-36567238 | None:intergenic | 35.0% | |
| TTCTTGCACTTATCATGAGT+GGG | - | chr5_4:36567307-36567326 | Msa0849500:intron | 35.0% | |
| ! | TTCTTTTGTCTCTCCTTTTC+TGG | - | chr5_4:36567494-36567513 | Msa0849500:intron | 35.0% |
| !!! | GTGGTTTGTTCTGTTTTTTC+TGG | - | chr5_4:36567541-36567560 | Msa0849500:intron | 35.0% |
| TTTATGTGAGCGTCTTATGA+CGG | - | chr5_4:36567654-36567673 | Msa0849500:intron | 35.0% | |
| TTATGACTTTCCTCTCATGA+CGG | - | chr5_4:36568052-36568071 | Msa0849500:CDS | 35.0% | |
| AAAAATTACACCTTTGGACG+GGG | + | chr5_4:36568199-36568218 | None:intergenic | 35.0% | |
| ! | TCACGTTTACATGTCTTTTC+AGG | - | chr5_4:36568233-36568252 | Msa0849500:CDS | 35.0% |
| GTTGAAATCTGATTCAACCA+AGG | - | chr5_4:36568263-36568282 | Msa0849500:intron | 35.0% | |
| AATCTGTGTCTCAATATCCT+TGG | + | chr5_4:36568283-36568302 | None:intergenic | 35.0% | |
| ! | GGATATTGAGACACAGATTT+TGG | - | chr5_4:36568284-36568303 | Msa0849500:intron | 35.0% |
| CATATCGGAAGTGATAGAAA+AGG | + | chr5_4:36568410-36568429 | None:intergenic | 35.0% | |
| ! | TAGCACATTGGTGATATTAG+TGG | - | chr5_4:36568617-36568636 | Msa0849500:intron | 35.0% |
| ACTTGATGCATTAGACATGA+AGG | - | chr5_4:36568733-36568752 | Msa0849500:intron | 35.0% | |
| CCAACTGAATTAAACCAACA+AGG | + | chr5_4:36568785-36568804 | None:intergenic | 35.0% | |
| !! | CCTTGTTGGTTTAATTCAGT+TGG | - | chr5_4:36568782-36568801 | Msa0849500:intron | 35.0% |
| GTTACCTCTTAATGAATAGG+AGG | - | chr5_4:36568862-36568881 | Msa0849500:intron | 35.0% | |
| AGTTTCTTAAGTGACCTTGT+AGG | - | chr5_4:36568904-36568923 | Msa0849500:intron | 35.0% | |
| CCAACTGAATTAAACCTACA+AGG | + | chr5_4:36568921-36568940 | None:intergenic | 35.0% | |
| CCTTGTAGGTTTAATTCAGT+TGG | - | chr5_4:36568918-36568937 | Msa0849500:intron | 35.0% | |
| AGAGTAATCAAAGGAGAAAC+TGG | + | chr5_4:36568974-36568993 | None:intergenic | 35.0% | |
| ACACCCTTAAGAGTAATCAA+AGG | + | chr5_4:36568983-36569002 | None:intergenic | 35.0% | |
| ! | ATTACTCTTAAGGGTGTGTT+TGG | - | chr5_4:36568986-36569005 | Msa0849500:intron | 35.0% |
| ! | CAAACACACCCTTAGATTTT+CGG | - | chr5_4:36569196-36569215 | Msa0849500:intron | 35.0% |
| TTCTTTATTGTGCGAGAATG+GGG | + | chr5_4:36569230-36569249 | None:intergenic | 35.0% | |
| GCATTGTTACTAACTGTCTA+AGG | - | chr5_4:36569302-36569321 | Msa0849500:intron | 35.0% | |
| TAATGTGTTAGACTATTGCC+CGG | + | chr5_4:36569351-36569370 | None:intergenic | 35.0% | |
| ! | AGGTTTATTCCTAGGAGTAT+GGG | + | chr5_4:36569390-36569409 | None:intergenic | 35.0% |
| TAGGTTTATTCCTAGGAGTA+TGG | + | chr5_4:36569391-36569410 | None:intergenic | 35.0% | |
| ACAATGCGGATAAAATGAAG+GGG | + | chr5_4:36569869-36569888 | None:intergenic | 35.0% | |
| TACGATATGGCATGAATCTA+TGG | + | chr5_4:36570005-36570024 | None:intergenic | 35.0% | |
| ! | TTTTCACCAGATCTACGATA+TGG | + | chr5_4:36570018-36570037 | None:intergenic | 35.0% |
| TCATCATCAAACCCCAAATA+TGG | + | chr5_4:36570114-36570133 | None:intergenic | 35.0% | |
| GATTTGGAGAATGTTCAACA+AGG | + | chr5_4:36570139-36570158 | None:intergenic | 35.0% | |
| GTTGAACATTCTCCAAATCA+TGG | - | chr5_4:36570140-36570159 | Msa0849500:intron | 35.0% | |
| ACAACACAAAAGCCATGATT+TGG | + | chr5_4:36570155-36570174 | None:intergenic | 35.0% | |
| !!! | TACCAACAACCACTTTTTTG+GGG | - | chr5_4:36570190-36570209 | Msa0849500:intron | 35.0% |
| ! | TTCTTGCTACTAGCTTCCAT+TGG | + | chr5_4:36565813-36565832 | None:intergenic | 40.0% |
| ! | ACATCTCTAAAAGCAGGAAC+TGG | + | chr5_4:36565837-36565856 | None:intergenic | 40.0% |
| TGTCATTCAAGCTCCTAAGA+AGG | - | chr5_4:36565854-36565873 | Msa0849500:three_prime_UTR | 40.0% | |
| AACAACACGAGATATCAGCA+GGG | + | chr5_4:36565928-36565947 | None:intergenic | 40.0% | |
| AAACAACACGAGATATCAGC+AGG | + | chr5_4:36565929-36565948 | None:intergenic | 40.0% | |
| ! | GATCCCGCAATTTGTTTAAC+AGG | + | chr5_4:36566046-36566065 | None:intergenic | 40.0% |
| !! | TTTACATATGATAGCGGACC+TGG | + | chr5_4:36566143-36566162 | None:intergenic | 40.0% |
| GCGGTACATTTGACAATGAT+CGG | - | chr5_4:36566343-36566362 | Msa0849500:intron | 40.0% | |
| TGAAAGAACGTCACTTAGCT+AGG | + | chr5_4:36566532-36566551 | None:intergenic | 40.0% | |
| TTCTTGAGGACAGTGATAAC+CGG | + | chr5_4:36566577-36566596 | None:intergenic | 40.0% | |
| TGTCCTCAAGAAGTCAACAT+AGG | - | chr5_4:36566585-36566604 | Msa0849500:intron | 40.0% | |
| !! | CTTCCTATGTTGACTTCTTG+AGG | + | chr5_4:36566591-36566610 | None:intergenic | 40.0% |
| ACATAGGAAGAATGTGTCGA+AGG | - | chr5_4:36566601-36566620 | Msa0849500:intron | 40.0% | |
| !! | AGGAAGGACATGCTCTAAAA+TGG | + | chr5_4:36567000-36567019 | None:intergenic | 40.0% |
| !!! | ATTTTAGAGCATGTCCTTCC+TGG | - | chr5_4:36566999-36567018 | Msa0849500:intron | 40.0% |
| GGCATTAGATATCCTCTGTT+TGG | - | chr5_4:36567149-36567168 | Msa0849500:intron | 40.0% | |
| ! | ACAATGCCATGTCGTTTATG+TGG | - | chr5_4:36567210-36567229 | Msa0849500:intron | 40.0% |
| GATAAGTGCAAGAACTAGCA+GGG | + | chr5_4:36567301-36567320 | None:intergenic | 40.0% | |
| TGATAAGTGCAAGAACTAGC+AGG | + | chr5_4:36567302-36567321 | None:intergenic | 40.0% | |
| GTTCTTGCACTTATCATGAG+TGG | - | chr5_4:36567306-36567325 | Msa0849500:intron | 40.0% | |
| AGAGACAAAAGAACAACCAG+GGG | + | chr5_4:36567487-36567506 | None:intergenic | 40.0% | |
| GAGAGACAAAAGAACAACCA+GGG | + | chr5_4:36567488-36567507 | None:intergenic | 40.0% | |
| ! | TTCTTTTCGCCTTTAGTCGT+TGG | - | chr5_4:36567580-36567599 | Msa0849500:intron | 40.0% |
| AAACACACACCAACGACTAA+AGG | + | chr5_4:36567592-36567611 | None:intergenic | 40.0% | |
| TTAGTCGTTGGTGTGTGTTT+CGG | - | chr5_4:36567592-36567611 | Msa0849500:intron | 40.0% | |
| ATACATGTACTTGGACTTGC+AGG | - | chr5_4:36567926-36567945 | Msa0849500:CDS | 40.0% | |
| TGGCATAACAGGCTCTTAAA+AGG | - | chr5_4:36568082-36568101 | Msa0849500:CDS | 40.0% | |
| TCTATTTCACTTCTACGCTC+TGG | + | chr5_4:36568129-36568148 | None:intergenic | 40.0% | |
| ! | AAATAGAAGAGCGCATAGCA+TGG | - | chr5_4:36568142-36568161 | Msa0849500:intron | 40.0% |
| ! | AATAGAAGAGCGCATAGCAT+GGG | - | chr5_4:36568143-36568162 | Msa0849500:intron | 40.0% |
| ! | TAGGAGTATGAAGACCTTGT+TGG | - | chr5_4:36568768-36568787 | Msa0849500:intron | 40.0% |
| ACACCCTCCTATTCATTAAG+AGG | + | chr5_4:36568869-36568888 | None:intergenic | 40.0% | |
| ! | ATGAATAGGAGGGTGTGTAT+CGG | - | chr5_4:36568873-36568892 | Msa0849500:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+CGG | + | chr5_4:36569180-36569199 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr5_4:36569184-36569203 | None:intergenic | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr5_4:36569190-36569209 | None:intergenic | 40.0% |
| ! | CGAAAATCTAAGGGTGTGTT+TGG | + | chr5_4:36569198-36569217 | None:intergenic | 40.0% |
| AGTAGGGACCGAAAATCTAA+GGG | + | chr5_4:36569207-36569226 | None:intergenic | 40.0% | |
| !! | CCACCCTTAAGCTCATTTTT+AGG | + | chr5_4:36569410-36569429 | None:intergenic | 40.0% |
| CCTAAAAATGAGCTTAAGGG+TGG | - | chr5_4:36569407-36569426 | Msa0849500:intron | 40.0% | |
| !! | TTTGTTTTTCAGCCGAGATC+CGG | - | chr5_4:36569779-36569798 | Msa0849500:intron | 40.0% |
| TTTCAACAAGCCTTTGCTTC+CGG | + | chr5_4:36569801-36569820 | None:intergenic | 40.0% | |
| CAATGCGGATAAAATGAAGG+GGG | + | chr5_4:36569868-36569887 | None:intergenic | 40.0% | |
| TTCATGCCATATCGTAGATC+TGG | - | chr5_4:36570009-36570028 | Msa0849500:intron | 40.0% | |
| !!! | ACCAACAACCACTTTTTTGG+GGG | - | chr5_4:36570191-36570210 | Msa0849500:intron | 40.0% |
| CAAATTGCGGGATCATAGAG+AGG | - | chr5_4:36566052-36566071 | Msa0849500:three_prime_UTR | 45.0% | |
| CCACGATTTGAGTCTCTTTG+CGG | - | chr5_4:36566324-36566343 | Msa0849500:intron | 45.0% | |
| ATGATCGGTATGTTCACCTC+TGG | - | chr5_4:36566358-36566377 | Msa0849500:intron | 45.0% | |
| AGAACAACGAAAACGTCCAG+AGG | + | chr5_4:36566377-36566396 | None:intergenic | 45.0% | |
| ! | GAAGAATGTGTCGAAGGTGT+GGG | - | chr5_4:36566607-36566626 | Msa0849500:intron | 45.0% |
| TTGCACTTATCATGAGTGGG+AGG | - | chr5_4:36567310-36567329 | Msa0849500:intron | 45.0% | |
| AGACAAAAGAACAACCAGGG+GGG | + | chr5_4:36567485-36567504 | None:intergenic | 45.0% | |
| GAGACAAAAGAACAACCAGG+GGG | + | chr5_4:36567486-36567505 | None:intergenic | 45.0% | |
| GGAGAGACAAAAGAACAACC+AGG | + | chr5_4:36567489-36567508 | None:intergenic | 45.0% | |
| TGATCTTCCTGCTGAAAGAC+AGG | - | chr5_4:36567981-36568000 | Msa0849500:intron | 45.0% | |
| CGGGGAAGACTAACTTCAAA+AGG | + | chr5_4:36568181-36568200 | None:intergenic | 45.0% | |
| CAATGTGCTACAAGCGAAAG+GGG | + | chr5_4:36568607-36568626 | None:intergenic | 45.0% | |
| CCAATGTGCTACAAGCGAAA+GGG | + | chr5_4:36568608-36568627 | None:intergenic | 45.0% | |
| ACCAATGTGCTACAAGCGAA+AGG | + | chr5_4:36568609-36568628 | None:intergenic | 45.0% | |
| GTCTTCATACTCCTAGAGGA+TGG | + | chr5_4:36568763-36568782 | None:intergenic | 45.0% | |
| CAAGGTCTTCATACTCCTAG+AGG | + | chr5_4:36568767-36568786 | None:intergenic | 45.0% | |
| ! | CTCTTAAGGGTGTGTTTGGA+TGG | - | chr5_4:36568990-36569009 | Msa0849500:intron | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr5_4:36568993-36569012 | Msa0849500:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr5_4:36568994-36569013 | Msa0849500:intron | 45.0% |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr5_4:36569000-36569019 | Msa0849500:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr5_4:36569004-36569023 | Msa0849500:intron | 45.0% | |
| ! | TTGGATTGAGGGTTTAGGAC+GGG | + | chr5_4:36569179-36569198 | None:intergenic | 45.0% |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | + | chr5_4:36569191-36569210 | None:intergenic | 45.0% |
| GAGTAGGGACCGAAAATCTA+AGG | + | chr5_4:36569208-36569227 | None:intergenic | 45.0% | |
| TATTGCCCGGTTTCACTGTA+GGG | + | chr5_4:36569338-36569357 | None:intergenic | 45.0% | |
| ATGAGCTTAAGGGTGGTTAC+AGG | - | chr5_4:36569414-36569433 | Msa0849500:intron | 45.0% | |
| TAATTTCCCCCATGTGCAAG+AGG | + | chr5_4:36569528-36569547 | None:intergenic | 45.0% | |
| GAGGAAGAGAAATGCTGCAA+AGG | - | chr5_4:36569978-36569997 | Msa0849500:intron | 45.0% | |
| TCGTAGATCTGGTGAAAACG+TGG | - | chr5_4:36570020-36570039 | Msa0849500:intron | 45.0% | |
| TCTGGTGAAAACGTGGAGTA+AGG | - | chr5_4:36570027-36570046 | Msa0849500:intron | 45.0% | |
| GGCTGTTGTTAACCCTGTAA+TGG | - | chr5_4:36570048-36570067 | Msa0849500:intron | 45.0% | |
| ACCCCCAAAAAAGTGGTTGT+TGG | + | chr5_4:36570195-36570214 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTTTTTTTTTGTA+TGG | + | chr5_4:36567735-36567754 | None:intergenic | 5.0% |
| !! | ATACAAAAAAAAAAAAAAAT+AGG | - | chr5_4:36567734-36567753 | Msa0849500:intron | 5.0% |
| !!! | ATTTGAAATTTTAAATTTTA+TGG | - | chr5_4:36569440-36569459 | Msa0849500:intron | 5.0% |
| ATCAGCAGGGCAGAGATCAT+TGG | + | chr5_4:36565915-36565934 | None:intergenic | 50.0% | |
| ATTGCGGGATCATAGAGAGG+AGG | - | chr5_4:36566055-36566074 | Msa0849500:three_prime_UTR | 50.0% | |
| CCGCAAAGAGACTCAAATCG+TGG | + | chr5_4:36566327-36566346 | None:intergenic | 50.0% | |
| GGAAGAATGTGTCGAAGGTG+TGG | - | chr5_4:36566606-36566625 | Msa0849500:intron | 50.0% | |
| !! | AATAGCCAAGGAAAGGCACC+AGG | + | chr5_4:36567020-36567039 | None:intergenic | 50.0% |
| GCATGTGCACGCATACACAA+TGG | + | chr5_4:36567113-36567132 | None:intergenic | 50.0% | |
| CTGCAGCAATACCCAAACAG+AGG | + | chr5_4:36567164-36567183 | None:intergenic | 50.0% | |
| ! | TAGCAGGGCACTTATGAGCT+GGG | + | chr5_4:36567286-36567305 | None:intergenic | 50.0% |
| GTGGGTTCTTTGGTCTGTGT+GGG | - | chr5_4:36567420-36567439 | Msa0849500:intron | 50.0% | |
| TGGGTTCTTTGGTCTGTGTG+GGG | - | chr5_4:36567421-36567440 | Msa0849500:intron | 50.0% | |
| TCTGTGTGGGGAGTTGTGTA+GGG | - | chr5_4:36567433-36567452 | Msa0849500:intron | 50.0% | |
| !!! | CTCTCCTTTTCTGGTTCAGC+AGG | - | chr5_4:36567503-36567522 | Msa0849500:intron | 50.0% |
| AGCACCTGCTGAACCAGAAA+AGG | + | chr5_4:36567510-36567529 | None:intergenic | 50.0% | |
| !! | TTTCTGGTTCAGCAGGTGCT+TGG | - | chr5_4:36567510-36567529 | Msa0849500:intron | 50.0% |
| CTTCCTGCTGAAAGACAGGT+AGG | - | chr5_4:36567985-36568004 | Msa0849500:intron | 50.0% | |
| CTACCTACCTGTCTTTCAGC+AGG | + | chr5_4:36567991-36568010 | None:intergenic | 50.0% | |
| ACGGCATCTTCTGGCATAAC+AGG | - | chr5_4:36568071-36568090 | Msa0849500:CDS | 50.0% | |
| !! | AGTTAGTCTTCCCCGTCCAA+AGG | - | chr5_4:36568186-36568205 | Msa0849500:intron | 50.0% |
| AGAGAGAGAAGCAGCAAAGC+AGG | - | chr5_4:36568323-36568342 | Msa0849500:intron | 50.0% | |
| GAGAGAGAAGCAGCAAAGCA+GGG | - | chr5_4:36568324-36568343 | Msa0849500:intron | 50.0% | |
| CCCTTTCGCTTGTAGCACAT+TGG | - | chr5_4:36568605-36568624 | Msa0849500:intron | 50.0% | |
| ATGAAGGTGAGCCATCCTCT+AGG | - | chr5_4:36568749-36568768 | Msa0849500:intron | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr5_4:36569003-36569022 | Msa0849500:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr5_4:36569005-36569024 | Msa0849500:intron | 50.0% | |
| ! | TTGAGGGTTTAGGACGGGAA+GGG | + | chr5_4:36569174-36569193 | None:intergenic | 50.0% |
| ! | ATTGAGGGTTTAGGACGGGA+AGG | + | chr5_4:36569175-36569194 | None:intergenic | 50.0% |
| TTGTGCGAGAATGGGGAGTA+GGG | + | chr5_4:36569223-36569242 | None:intergenic | 50.0% | |
| ATTGTGCGAGAATGGGGAGT+AGG | + | chr5_4:36569224-36569243 | None:intergenic | 50.0% | |
| CCAACACCCTACAGTGAAAC+CGG | - | chr5_4:36569329-36569348 | Msa0849500:intron | 50.0% | |
| CAACACCCTACAGTGAAACC+GGG | - | chr5_4:36569330-36569349 | Msa0849500:intron | 50.0% | |
| CTATTGCCCGGTTTCACTGT+AGG | + | chr5_4:36569339-36569358 | None:intergenic | 50.0% | |
| ATCCCCTTTCCTCTTGCACA+TGG | - | chr5_4:36569516-36569535 | Msa0849500:intron | 50.0% | |
| TCCCCTTTCCTCTTGCACAT+GGG | - | chr5_4:36569517-36569536 | Msa0849500:intron | 50.0% | |
| AAGCCTTTGCTTCCGGATCT+CGG | + | chr5_4:36569794-36569813 | None:intergenic | 50.0% | |
| GGGCGCTATCTTCCATTACA+GGG | + | chr5_4:36570063-36570082 | None:intergenic | 50.0% | |
| TGGGCGCTATCTTCCATTAC+AGG | + | chr5_4:36570064-36570083 | None:intergenic | 50.0% | |
| TCCTTCCTGGTGCCTTTCCT+TGG | - | chr5_4:36567012-36567031 | Msa0849500:intron | 55.0% | |
| ! | CTAGCAGGGCACTTATGAGC+TGG | + | chr5_4:36567287-36567306 | None:intergenic | 55.0% |
| TACCGCTGCCAACAAAGGAC+GGG | + | chr5_4:36567341-36567360 | None:intergenic | 55.0% | |
| CTACCGCTGCCAACAAAGGA+CGG | + | chr5_4:36567342-36567361 | None:intergenic | 55.0% | |
| GTCCTTTGTTGGCAGCGGTA+GGG | - | chr5_4:36567341-36567360 | Msa0849500:intron | 55.0% | |
| ! | GGTGGGTTCTTTGGTCTGTG+TGG | - | chr5_4:36567419-36567438 | Msa0849500:intron | 55.0% |
| GTCTGTGTGGGGAGTTGTGT+AGG | - | chr5_4:36567432-36567451 | Msa0849500:intron | 55.0% | |
| TTTCTCTGCCTCCTCTCCTC+TGG | - | chr5_4:36567456-36567475 | Msa0849500:intron | 55.0% | |
| CAAAAGAACAACCAGGGGGG+CGG | + | chr5_4:36567482-36567501 | None:intergenic | 55.0% | |
| TGGTTCAGCAGGTGCTTGGT+TGG | - | chr5_4:36567514-36567533 | Msa0849500:intron | 55.0% | |
| ! | CAGCAGGTGCTTGGTTGGTT+TGG | - | chr5_4:36567519-36567538 | Msa0849500:intron | 55.0% |
| !! | CAGGTGCTTGGTTGGTTTGG+TGG | - | chr5_4:36567522-36567541 | Msa0849500:intron | 55.0% |
| TGTGTGTTTCGGCCTTCCCA+GGG | - | chr5_4:36567603-36567622 | Msa0849500:intron | 55.0% | |
| GTGTGTAGGGGGTCGTTCTT+GGG | - | chr5_4:36567628-36567647 | Msa0849500:intron | 55.0% | |
| TGTGTAGGGGGTCGTTCTTG+GGG | - | chr5_4:36567629-36567648 | Msa0849500:intron | 55.0% | |
| CCAGAAGATGCCGTCATGAG+AGG | + | chr5_4:36568065-36568084 | None:intergenic | 55.0% | |
| CCTCTCATGACGGCATCTTC+TGG | - | chr5_4:36568062-36568081 | Msa0849500:CDS | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr5_4:36569009-36569028 | Msa0849500:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr5_4:36569010-36569029 | Msa0849500:intron | 55.0% | |
| CCGGTTTCACTGTAGGGTGT+TGG | + | chr5_4:36569332-36569351 | None:intergenic | 55.0% | |
| TTGCTAGCGCCCATACTCCT+AGG | - | chr5_4:36569378-36569397 | Msa0849500:intron | 55.0% | |
| CCCCATGTGCAAGAGGAAAG+GGG | + | chr5_4:36569521-36569540 | None:intergenic | 55.0% | |
| CCCCTTTCCTCTTGCACATG+GGG | - | chr5_4:36569518-36569537 | Msa0849500:intron | 55.0% | |
| CCCCCATGTGCAAGAGGAAA+GGG | + | chr5_4:36569522-36569541 | None:intergenic | 55.0% | |
| CCCTTTCCTCTTGCACATGG+GGG | - | chr5_4:36569519-36569538 | Msa0849500:intron | 55.0% | |
| TCCCCCATGTGCAAGAGGAA+AGG | + | chr5_4:36569523-36569542 | None:intergenic | 55.0% | |
| !! | GCCAAGGAAAGGCACCAGGA+AGG | + | chr5_4:36567016-36567035 | None:intergenic | 60.0% |
| AGGTGCAGCCCGTCCTTTGT+TGG | - | chr5_4:36567330-36567349 | Msa0849500:intron | 60.0% | |
| AGCCCGTCCTTTGTTGGCAG+CGG | - | chr5_4:36567336-36567355 | Msa0849500:intron | 60.0% | |
| CGTCCTTTGTTGGCAGCGGT+AGG | - | chr5_4:36567340-36567359 | Msa0849500:intron | 60.0% | |
| TGCCCTACCGCTGCCAACAA+AGG | + | chr5_4:36567346-36567365 | None:intergenic | 60.0% | |
| ! | TGGCAGCGGTAGGGCATTCT+TGG | - | chr5_4:36567350-36567369 | Msa0849500:intron | 60.0% |
| ! | GGCAGCGGTAGGGCATTCTT+GGG | - | chr5_4:36567351-36567370 | Msa0849500:intron | 60.0% |
| ! | GCAGCGGTAGGGCATTCTTG+GGG | - | chr5_4:36567352-36567371 | Msa0849500:intron | 60.0% |
| ! | CAGCGGTAGGGCATTCTTGG+GGG | - | chr5_4:36567353-36567372 | Msa0849500:intron | 60.0% |
| ! | AGCGGTAGGGCATTCTTGGG+GGG | - | chr5_4:36567354-36567373 | Msa0849500:intron | 60.0% |
| GTGTGTGTTTCGGCCTTCCC+AGG | - | chr5_4:36567602-36567621 | Msa0849500:intron | 60.0% | |
| GTGTGTTTCGGCCTTCCCAG+GGG | - | chr5_4:36567604-36567623 | Msa0849500:intron | 60.0% | |
| CGTGTGTAGGGGGTCGTTCT+TGG | - | chr5_4:36567627-36567646 | Msa0849500:intron | 60.0% | |
| GTGTAGGGGGTCGTTCTTGG+GGG | - | chr5_4:36567630-36567649 | Msa0849500:intron | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr5_4:36569013-36569032 | Msa0849500:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr5_4:36569014-36569033 | Msa0849500:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr5_4:36569015-36569034 | Msa0849500:intron | 60.0% | |
| ! | GGTTTAGGACGGGAAGGGAG+GGG | + | chr5_4:36569169-36569188 | None:intergenic | 60.0% |
| ! | GGGTTTAGGACGGGAAGGGA+GGG | + | chr5_4:36569170-36569189 | None:intergenic | 60.0% |
| ! | AGGGTTTAGGACGGGAAGGG+AGG | + | chr5_4:36569171-36569190 | None:intergenic | 60.0% |
| CAGCCGAGATCCGGAAGCAA+AGG | - | chr5_4:36569788-36569807 | Msa0849500:intron | 60.0% | |
| ! | GCGGTAGGGCATTCTTGGGG+GGG | - | chr5_4:36567355-36567374 | Msa0849500:intron | 65.0% |
| ! | CGGTAGGGCATTCTTGGGGG+GGG | - | chr5_4:36567356-36567375 | Msa0849500:intron | 65.0% |
| ! | GGTAGGGCATTCTTGGGGGG+GGG | - | chr5_4:36567357-36567376 | Msa0849500:intron | 65.0% |
| ! | GTAGGGCATTCTTGGGGGGG+GGG | - | chr5_4:36567358-36567377 | Msa0849500:intron | 65.0% |
| ! | TAGGGCATTCTTGGGGGGGG+GGG | - | chr5_4:36567359-36567378 | Msa0849500:intron | 65.0% |
| ! | GGTGGGGAGGGTGGGTTCTT+TGG | - | chr5_4:36567410-36567429 | Msa0849500:intron | 65.0% |
| ! | CCTTCCCAGGGGCGTGTGTA+GGG | - | chr5_4:36567615-36567634 | Msa0849500:intron | 65.0% |
| ! | CTTCCCAGGGGCGTGTGTAG+GGG | - | chr5_4:36567616-36567635 | Msa0849500:intron | 65.0% |
| ! | TTCCCAGGGGCGTGTGTAGG+GGG | - | chr5_4:36567617-36567636 | Msa0849500:intron | 65.0% |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr5_4:36569018-36569037 | Msa0849500:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr5_4:36569019-36569038 | Msa0849500:intron | 65.0% | |
| TAGGACGGGAAGGGAGGGGA+GGG | + | chr5_4:36569165-36569184 | None:intergenic | 65.0% | |
| TTAGGACGGGAAGGGAGGGG+AGG | + | chr5_4:36569166-36569185 | None:intergenic | 65.0% | |
| ! | AGGGCATTCTTGGGGGGGGG+GGG | - | chr5_4:36567360-36567379 | Msa0849500:intron | 70.0% |
| ! | GCCTTCCCAGGGGCGTGTGT+AGG | - | chr5_4:36567614-36567633 | Msa0849500:intron | 70.0% |
| CCCTACACACGCCCCTGGGA+AGG | + | chr5_4:36567618-36567637 | None:intergenic | 70.0% | |
| GACCCCCTACACACGCCCCT+GGG | + | chr5_4:36567622-36567641 | None:intergenic | 70.0% | |
| GGGCATTCTTGGGGGGGGGG+GGG | - | chr5_4:36567361-36567380 | Msa0849500:intron | 75.0% | |
| GGCATTCTTGGGGGGGGGGG+GGG | - | chr5_4:36567362-36567381 | Msa0849500:intron | 75.0% | |
| GCATTCTTGGGGGGGGGGGG+GGG | - | chr5_4:36567363-36567382 | Msa0849500:intron | 75.0% | |
| CATTCTTGGGGGGGGGGGGG+GGG | - | chr5_4:36567364-36567383 | Msa0849500:intron | 75.0% | |
| ATTCTTGGGGGGGGGGGGGG+GGG | - | chr5_4:36567365-36567384 | Msa0849500:intron | 75.0% | |
| GGTGGGGTTGGGGTGGGGGT+GGG | - | chr5_4:36567386-36567405 | Msa0849500:intron | 75.0% | |
| GTGGGGTTGGGGTGGGGGTG+GGG | - | chr5_4:36567387-36567406 | Msa0849500:intron | 75.0% | |
| TGGGGTTGGGGTGGGGGTGG+GGG | - | chr5_4:36567388-36567407 | Msa0849500:intron | 75.0% | |
| TTGGGGTGGGGGTGGGGGGT+GGG | - | chr5_4:36567393-36567412 | Msa0849500:intron | 75.0% | |
| ACAACCAGGGGGGCGGCCAG+AGG | + | chr5_4:36567475-36567494 | None:intergenic | 75.0% | |
| CGACCCCCTACACACGCCCC+TGG | + | chr5_4:36567623-36567642 | None:intergenic | 75.0% | |
| ! | GGGGGGGGTGGGGTTGGGGT+GGG | - | chr5_4:36567380-36567399 | Msa0849500:intron | 80.0% |
| ! | GGGGGGGTGGGGTTGGGGTG+GGG | - | chr5_4:36567381-36567400 | Msa0849500:intron | 80.0% |
| ! | GGGGGGTGGGGTTGGGGTGG+GGG | - | chr5_4:36567382-36567401 | Msa0849500:intron | 80.0% |
| ! | GGGTGGGGTTGGGGTGGGGG+TGG | - | chr5_4:36567385-36567404 | Msa0849500:intron | 80.0% |
| ! | GGGGTTGGGGTGGGGGTGGG+GGG | - | chr5_4:36567389-36567408 | Msa0849500:intron | 80.0% |
| ! | GTTGGGGTGGGGGTGGGGGG+TGG | - | chr5_4:36567392-36567411 | Msa0849500:intron | 80.0% |
| ! | TGGGGTGGGGGTGGGGGGTG+GGG | - | chr5_4:36567394-36567413 | Msa0849500:intron | 80.0% |
| ! | GTGGGGGTGGGGGGTGGGGA+GGG | - | chr5_4:36567398-36567417 | Msa0849500:intron | 80.0% |
| ! | GGGTGGGGGGTGGGGAGGGT+GGG | - | chr5_4:36567402-36567421 | Msa0849500:intron | 80.0% |
| ! | GGGGGCGGCCAGAGGAGAGG+AGG | + | chr5_4:36567467-36567486 | None:intergenic | 80.0% |
| ! | CAGGGGGGCGGCCAGAGGAG+AGG | + | chr5_4:36567470-36567489 | None:intergenic | 80.0% |
| ! | CTCTCCTCTGGCCGCCCCCC+TGG | - | chr5_4:36567468-36567487 | Msa0849500:intron | 80.0% |
| ! | TTGGGGGGGGGGGGGGGGGT+GGG | - | chr5_4:36567369-36567388 | Msa0849500:intron | 85.0% |
| ! | GGGGGGGGGGGGGTGGGGTT+GGG | - | chr5_4:36567375-36567394 | Msa0849500:intron | 85.0% |
| ! | GGGGGGGGGGGGTGGGGTTG+GGG | - | chr5_4:36567376-36567395 | Msa0849500:intron | 85.0% |
| ! | GGGGGGGGGTGGGGTTGGGG+TGG | - | chr5_4:36567379-36567398 | Msa0849500:intron | 85.0% |
| ! | GGTGGGGGTGGGGGGTGGGG+AGG | - | chr5_4:36567397-36567416 | Msa0849500:intron | 85.0% |
| ! | GGGGTGGGGGGTGGGGAGGG+TGG | - | chr5_4:36567401-36567420 | Msa0849500:intron | 85.0% |
| ! | CTTGGGGGGGGGGGGGGGGG+TGG | - | chr5_4:36567368-36567387 | Msa0849500:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGTG+GGG | - | chr5_4:36567370-36567389 | Msa0849500:intron | 90.0% |
| ! | GGGGGGGGGGGGGGTGGGGT+TGG | - | chr5_4:36567374-36567393 | Msa0849500:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 36565808 | 36570404 | 36565808 | ID=Msa0849500;Name=Msa0849500 |
| chr5_4 | mRNA | 36565808 | 36570404 | 36565808 | ID=Msa0849500-mRNA-1;Parent=Msa0849500;Name=Msa0849500-mRNA-1;_AED=0.14;_eAED=0.14;_QI=5|1|1|1|1|1|7|357|171 |
| chr5_4 | exon | 36565808 | 36566269 | 36565808 | ID=Msa0849500-mRNA-1:exon:12042;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36566375 | 36566421 | 36566375 | ID=Msa0849500-mRNA-1:exon:12041;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36567840 | 36567957 | 36567840 | ID=Msa0849500-mRNA-1:exon:12040;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36568045 | 36568119 | 36568045 | ID=Msa0849500-mRNA-1:exon:12039;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36568210 | 36568264 | 36568210 | ID=Msa0849500-mRNA-1:exon:12038;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36569848 | 36569900 | 36569848 | ID=Msa0849500-mRNA-1:exon:12037;Parent=Msa0849500-mRNA-1 |
| chr5_4 | exon | 36570337 | 36570404 | 36570337 | ID=Msa0849500-mRNA-1:exon:12036;Parent=Msa0849500-mRNA-1 |
| chr5_4 | five_prime_UTR | 36570400 | 36570404 | 36570400 | ID=Msa0849500-mRNA-1:five_prime_utr;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36570337 | 36570399 | 36570337 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36569848 | 36569900 | 36569848 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36568210 | 36568264 | 36568210 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36568045 | 36568119 | 36568045 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36567840 | 36567957 | 36567840 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36566375 | 36566421 | 36566375 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | CDS | 36566165 | 36566269 | 36566165 | ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1 |
| chr5_4 | three_prime_UTR | 36565808 | 36566164 | 36565808 | ID=Msa0849500-mRNA-1:three_prime_utr;Parent=Msa0849500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
