AlfalfaGEDB | Msa0849500

M. sativa cultivar zhongmu-4 / Msa0849500

KEGG: K14795
GO: -
PFAM: PF06102.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849500	XP_003614714.1	97.661	171	4	0	1	171	82	252	3.42e-117	342

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849500	sp\|A7SL20\|RRP36_NEMVE	41.818	165	93	2	2	165	81	243	9.42e-35	125

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849500	G7JXB6	97.661	171	4	0	1	171	82	252	1.63e-117	342

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003780	Msa0849500	0.817153	3.821723e-52	-8.615850e-47
Msa0146340	Msa0849500	0.809314	2.011261e-50	-8.615850e-47
Msa0189320	Msa0849500	0.806622	7.523445e-50	-8.615850e-47
Msa0849500	Msa0849510	0.928092	4.700287e-92	-8.615850e-47
Msa0849500	Msa1043690	0.816449	5.497976e-52	-8.615850e-47
Msa0849500	Msa1361100	0.810824	9.512885e-51	-8.615850e-47
Msa0849500	Msa1374120	0.809200	2.128337e-50	-8.615850e-47
Msa0849500	Msa1399530	0.814302	1.651133e-51	-8.615850e-47

Showing 1 to 8 of 8 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849500	MtrunA17_Chr5g0423931	97.661	171	4	0	1	171	82	252	3.14e-121	342

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849500	AT1G12650.1	60.355	169	66	1	1	168	80	248	1.89e-62	193
Msa0849500	AT1G12650.2	60.355	169	66	1	1	168	80	248	1.89e-62	193
Msa0849500	AT1G12650.3	60.355	169	66	1	1	168	80	248	1.89e-62	193
Msa0849500	AT1G12650.4	60.355	169	66	1	1	168	80	248	1.89e-62	193

Showing 1 to 4 of 4 entries

Previous1Next

Find 41 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGAAGAGCGCATAGCA+TGG	0.572976	5_4:-36568048	Msa0849500:CDS
AAGCCTTTGCTTCCGGATCT+CGG	0.499116	5_4:+36566399	None:intergenic
AATAGAAGAGCGCATAGCAT+GGG	0.609808	5_4:-36568047	Msa0849500:CDS
AATCTGTGTCTCAATATCCT+TGG	0.534048	5_4:+36567910	None:intergenic
AATGTATATAACATTATTTC+TGG	0.158881	5_4:+36566109	None:intergenic
ACAACACAAAAGCCATGATT+TGG	0.397491	5_4:+36566038	None:intergenic
ACAATTAATCTGACCTTCTT+AGG	0.235824	5_4:+36570323	None:intergenic
ACATCTCTAAAAGCAGGAAC+TGG	0.481636	5_4:+36570356	None:intergenic
AGAGAGAGAAGCAGCAAAGC+AGG	0.383818	5_4:-36567867	Msa0849500:CDS
ATGTATATAACATTATTTCT+GGG	0.462708	5_4:+36566110	None:intergenic

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAATTAATCTGACCTTCTT+AGG	+	chr5_4:36565870-36565889	None:intergenic	30.0%
TTTCCCTGTTAAACAAATTG+CGG	-	chr5_4:36566039-36566058	Msa0849500:three_prime_UTR	30.0%
CTGAAACTCTTTCTTACTAT+GGG	-	chr5_4:36566654-36566673	Msa0849500:intron	30.0%
TGAAACTCTTTCTTACTATG+GGG	-	chr5_4:36566655-36566674	Msa0849500:intron	30.0%
AAAAAGAATAACCAACGACA+AGG	+	chr5_4:36566756-36566775	None:intergenic	30.0%
AAGCTGTTAGATAATACTGA+AGG	-	chr5_4:36566829-36566848	Msa0849500:intron	30.0%
ATCAAATGATACAATAGCCA+AGG	+	chr5_4:36567032-36567051	None:intergenic	30.0%
CATGCATATTATTTAGTCAG+CGG	-	chr5_4:36567128-36567147	Msa0849500:intron	30.0%
TCGTTTATGTGGATATCATT+TGG	-	chr5_4:36567221-36567240	Msa0849500:intron	30.0%
TTATGTGGATATCATTTGGT+TGG	-	chr5_4:36567225-36567244	Msa0849500:intron	30.0%

Showing 1 to 10 of 365 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	36565808	36570404	36565808	ID=Msa0849500;Name=Msa0849500
chr5_4	mRNA	36565808	36570404	36565808	ID=Msa0849500-mRNA-1;Parent=Msa0849500;Name=Msa0849500-mRNA-1;_AED=0.14;_eAED=0.14;_QI=5\|1\|1\|1\|1\|1\|7\|357\|171
chr5_4	exon	36565808	36566269	36565808	ID=Msa0849500-mRNA-1:exon:12042;Parent=Msa0849500-mRNA-1
chr5_4	exon	36566375	36566421	36566375	ID=Msa0849500-mRNA-1:exon:12041;Parent=Msa0849500-mRNA-1
chr5_4	exon	36567840	36567957	36567840	ID=Msa0849500-mRNA-1:exon:12040;Parent=Msa0849500-mRNA-1
chr5_4	exon	36568045	36568119	36568045	ID=Msa0849500-mRNA-1:exon:12039;Parent=Msa0849500-mRNA-1
chr5_4	exon	36568210	36568264	36568210	ID=Msa0849500-mRNA-1:exon:12038;Parent=Msa0849500-mRNA-1
chr5_4	exon	36569848	36569900	36569848	ID=Msa0849500-mRNA-1:exon:12037;Parent=Msa0849500-mRNA-1
chr5_4	exon	36570337	36570404	36570337	ID=Msa0849500-mRNA-1:exon:12036;Parent=Msa0849500-mRNA-1
chr5_4	five_prime_UTR	36570400	36570404	36570400	ID=Msa0849500-mRNA-1:five_prime_utr;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36570337	36570399	36570337	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36569848	36569900	36569848	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36568210	36568264	36568210	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36568045	36568119	36568045	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36567840	36567957	36567840	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36566375	36566421	36566375	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	CDS	36566165	36566269	36566165	ID=Msa0849500-mRNA-1:cds;Parent=Msa0849500-mRNA-1
chr5_4	three_prime_UTR	36565808	36566164	36565808	ID=Msa0849500-mRNA-1:three_prime_utr;Parent=Msa0849500-mRNA-1

Gene Sequence

>Msa0849500

ATGGAAGCTAGTAGCAAGAAACCAGTTCCTGCTTTTAGAGATGTCATTCAAGCTCCTAAGAAGGTTGTACGTGATCCACGATTTGAGTCTCTTTGCGGTACATTTGACAATGATCGGTTTAGAAAGAGATATAATTTTTTATATGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAAAGGCAATTGAGAAAATATAAAGATCCAGAGCGTAGAAGTGAAATAGAAGAGCGCATAGCATGGGTTGATAAACAGTTGAAATCTGATTCAACCAAGGATATTGAGACACAGATTTTGGCTAAGCACAAGAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCCTTTTATCTCAAGAAATCCGAGATCCGGAAGCAAAGGCTTGTTGAAAAATTTAATCATCTCAAGTCATCTGGAAATCTTGAATCATATATTGAGAAAAAGAGGAAGAGAAATGCTGCAAAGGACCATAGATTCATGCCATATCGTAGATCTGGTGAAAACGTGGAGTAA

Protein sequence

>Msa0849500

MEASSKKPVPAFRDVIQAPKKVVRDPRFESLCGTFDNDRFRKRYNFLYENDLPAERQALKRQLRKYKDPERRSEIEERIAWVDKQLKSDSTKDIETQILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLVEKFNHLKSSGNLESYIEKKRKRNAAKDHRFMPYRRSGENVE*