Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849510 | XP_003614714.1 | 91.724 | 145 | 7 | 1 | 2 | 146 | 113 | 252 | 3.03e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849510 | sp|A7SL20|RRP36_NEMVE | 38.583 | 127 | 75 | 2 | 15 | 140 | 119 | 243 | 1.10e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849510 | G7JXB6 | 91.724 | 145 | 7 | 1 | 2 | 146 | 113 | 252 | 1.45e-87 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa0849510 | 0.835619 | 1.509899e-56 | -8.615850e-47 |
| Msa0691900 | Msa0849510 | 0.809119 | 2.214947e-50 | -8.615850e-47 |
| Msa0788850 | Msa0849510 | 0.810839 | 9.438960e-51 | -8.615850e-47 |
| Msa0140650 | Msa0849510 | 0.801719 | 7.886048e-49 | -8.615850e-47 |
| Msa0146340 | Msa0849510 | 0.818109 | 2.326829e-52 | -8.615850e-47 |
| Msa0189320 | Msa0849510 | 0.836626 | 8.383130e-57 | -8.615850e-47 |
| Msa0191050 | Msa0849510 | 0.803832 | 2.888192e-49 | -8.615850e-47 |
| Msa0366890 | Msa0849510 | 0.814395 | 1.574835e-51 | -8.615850e-47 |
| Msa0376450 | Msa0849510 | -0.820714 | 5.929079e-53 | -8.615850e-47 |
| Msa0432080 | Msa0849510 | 0.803183 | 3.936408e-49 | -8.615850e-47 |
| Msa0471440 | Msa0849510 | 0.805411 | 1.352525e-49 | -8.615850e-47 |
| Msa0471720 | Msa0849510 | -0.821896 | 3.163630e-53 | -8.615850e-47 |
| Msa0267970 | Msa0849510 | 0.811297 | 7.513724e-51 | -8.615850e-47 |
| Msa0312650 | Msa0849510 | 0.801517 | 8.672983e-49 | -8.615850e-47 |
| Msa0516510 | Msa0849510 | -0.811035 | 8.563658e-51 | -8.615850e-47 |
| Msa0521050 | Msa0849510 | 0.804532 | 2.065184e-49 | -8.615850e-47 |
| Msa0849500 | Msa0849510 | 0.928092 | 4.700287e-92 | -8.615850e-47 |
| Msa0849510 | Msa0967650 | -0.821128 | 4.760299e-53 | -8.615850e-47 |
| Msa0849510 | Msa1043690 | 0.821462 | 3.987041e-53 | -8.615850e-47 |
| Msa0849510 | Msa1239910 | 0.810217 | 1.286266e-50 | -8.615850e-47 |
| Msa0849510 | Msa1307010 | -0.802572 | 5.263598e-49 | -8.615850e-47 |
| Msa0849510 | Msa1361100 | 0.830826 | 2.359164e-55 | -8.615850e-47 |
| Msa0849510 | Msa1374120 | 0.824633 | 7.261933e-54 | -8.615850e-47 |
| Msa0849510 | Msa1382620 | 0.800864 | 1.179612e-48 | -8.615850e-47 |
| Msa0849510 | Msa1391410 | 0.812764 | 3.597902e-51 | -8.615850e-47 |
| Msa0849510 | Msa1399530 | 0.810934 | 9.004995e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849510 | MtrunA17_Chr5g0423931 | 91.724 | 145 | 7 | 1 | 2 | 146 | 113 | 252 | 2.78e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849510 | AT1G12650.1 | 61.538 | 130 | 49 | 1 | 15 | 143 | 119 | 248 | 2.31e-45 | 148 |
| Msa0849510 | AT1G12650.2 | 61.538 | 130 | 49 | 1 | 15 | 143 | 119 | 248 | 2.31e-45 | 148 |
| Msa0849510 | AT1G12650.3 | 61.538 | 130 | 49 | 1 | 15 | 143 | 119 | 248 | 2.31e-45 | 148 |
| Msa0849510 | AT1G12650.4 | 61.538 | 130 | 49 | 1 | 15 | 143 | 119 | 248 | 2.31e-45 | 148 |
Find 36 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTATATAACATTATTTC+TGG | 0.158881 | 5_4:-36573955 | None:intergenic |
| CTTACATTTCTTGAGATAAA+AGG | 0.173906 | 5_4:-36572216 | None:intergenic |
| TGGGCGCTATCTTCCATTAC+AGG | 0.214191 | 5_4:-36573935 | None:intergenic |
| GAATATTGAGACACAGATTT+TGG | 0.225799 | 5_4:+36572145 | Msa0849510:CDS |
| AATCTGTGTCTCAATATTCT+TGG | 0.296593 | 5_4:-36572141 | None:intergenic |
| TGGCATAACAGGCTCTTAAA+AGG | 0.329338 | 5_4:+36571943 | Msa0849510:intron |
| TCATCATCAAACCCCAAATA+TGG | 0.330261 | 5_4:-36573985 | None:intergenic |
| TTTCAACAAGCCTTTGCTTC+CGG | 0.346969 | 5_4:-36573672 | None:intergenic |
| ATACATGTACCTGGACTTGC+AGG | 0.365944 | 5_4:+36571787 | Msa0849510:CDS |
| TACGATATGGCATGAATCTA+TGG | 0.372533 | 5_4:-36573876 | None:intergenic |
| AGAGAGAGAAGCAGCAAAGC+AGG | 0.383818 | 5_4:+36572184 | Msa0849510:CDS |
| GTTGAACATTCTCCAAATCA+TGG | 0.396786 | 5_4:+36574014 | Msa0849510:three_prime_UTR |
| ACAACACAAAAGCCATGATT+TGG | 0.397491 | 5_4:-36574026 | None:intergenic |
| TTACATTATTTCAAAGGATC+AGG | 0.406244 | 5_4:-36574196 | None:intergenic |
| TTACATTTCTTGAGATAAAA+GGG | 0.436036 | 5_4:-36572215 | None:intergenic |
| TCTATTTCACTTCTACGCTC+TGG | 0.442608 | 5_4:-36571987 | None:intergenic |
| ATGTATATAACATTATTTCT+GGG | 0.462708 | 5_4:-36573954 | None:intergenic |
| TTCATGCCATATCGTAGATC+TGG | 0.465483 | 5_4:+36573883 | Msa0849510:CDS |
| GGCTGTTGTTAACCCTGTAA+TGG | 0.497557 | 5_4:+36573922 | Msa0849510:three_prime_UTR |
| AAGCCTTTGCTTCCGGATCT+CGG | 0.499116 | 5_4:-36573665 | None:intergenic |
| GGAACATTACATTATTTCAA+AGG | 0.499208 | 5_4:-36574202 | None:intergenic |
| TGATCTTCCTGCTGAAAGAC+AGG | 0.502469 | 5_4:+36571842 | Msa0849510:CDS |
| TCTGGTGAAAACGTGGAGTA+AGG | 0.502921 | 5_4:+36573901 | Msa0849510:CDS |
| CAGCCGAGATCCGGAAGCAA+AGG | 0.510746 | 5_4:+36573662 | Msa0849510:intron |
| CTTTCTAAACCTGCAAGTCC+AGG | 0.545493 | 5_4:-36571796 | None:intergenic |
| GAGAGAGAAGCAGCAAAGCA+GGG | 0.548569 | 5_4:+36572185 | Msa0849510:CDS |
| GGGCGCTATCTTCCATTACA+GGG | 0.554643 | 5_4:-36573934 | None:intergenic |
| CTACCTACCTGTCTTTCAGC+AGG | 0.562589 | 5_4:-36571849 | None:intergenic |
| AAATAGAAGAGCGCATAGCA+TGG | 0.572976 | 5_4:+36572003 | Msa0849510:CDS |
| TTAGAATTATGAATTATCGT+AGG | 0.574452 | 5_4:+36574093 | Msa0849510:three_prime_UTR |
| CTAATAATAATACATGTACC+TGG | 0.579765 | 5_4:+36571778 | Msa0849510:CDS |
| GAGGAAGAGAAATGCTGCAA+AGG | 0.582512 | 5_4:+36573852 | Msa0849510:CDS |
| AATAGAAGAGCGCATAGCAT+GGG | 0.609808 | 5_4:+36572004 | Msa0849510:CDS |
| TCGTAGATCTGGTGAAAACG+TGG | 0.638393 | 5_4:+36573894 | Msa0849510:CDS |
| GTATTATTATTAGTGCTACA+CGG | 0.665391 | 5_4:-36571768 | None:intergenic |
| GATTTGGAGAATGTTCAACA+AGG | 0.703850 | 5_4:-36574010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTCAATTAAAAGAA+TGG | + | chr5_4:36573437-36573456 | Msa0849510:intron | 10.0% |
| !! | TAGTAAATAGATAAAATTAA+GGG | - | chr5_4:36573790-36573809 | None:intergenic | 10.0% |
| !! | ATAGTAAATAGATAAAATTA+AGG | - | chr5_4:36573791-36573810 | None:intergenic | 10.0% |
| !! | AAAGCTAATAAAATTAACAT+AGG | - | chr5_4:36572316-36572335 | None:intergenic | 15.0% |
| !! | ATAAAATAAAATTCCAACTA+TGG | + | chr5_4:36573613-36573632 | Msa0849510:intron | 15.0% |
| !!! | ATGTATATAACATTATTTCT+GGG | - | chr5_4:36573957-36573976 | None:intergenic | 15.0% |
| !! | AATGTATATAACATTATTTC+TGG | - | chr5_4:36573958-36573977 | None:intergenic | 15.0% |
| !! | ACTAATAAAAATTACACCTT+TGG | - | chr5_4:36572066-36572085 | None:intergenic | 20.0% |
| !! | TTACATTTCTTGAGATAAAA+GGG | - | chr5_4:36572218-36572237 | None:intergenic | 20.0% |
| !!! | TATTGAATGTCTCATATTTT+AGG | - | chr5_4:36572372-36572391 | None:intergenic | 20.0% |
| !! | AAAATATCATTATCCATAGT+TGG | - | chr5_4:36573629-36573648 | None:intergenic | 20.0% |
| !!! | CTATGGATAATGATATTTTT+TGG | + | chr5_4:36573630-36573649 | Msa0849510:intron | 20.0% |
| !! | TGAAAAATTTAATCATCTCA+AGG | + | chr5_4:36573690-36573709 | Msa0849510:CDS | 20.0% |
| !! | AATCATATATTGAGAAAAAG+AGG | + | chr5_4:36573833-36573852 | Msa0849510:CDS | 20.0% |
| !!! | TACATTTTGTATACCATATT+TGG | + | chr5_4:36573972-36573991 | Msa0849510:three_prime_UTR | 20.0% |
| !!! | ACATTTTGTATACCATATTT+GGG | + | chr5_4:36573973-36573992 | Msa0849510:three_prime_UTR | 20.0% |
| !! | TTAGAATTATGAATTATCGT+AGG | + | chr5_4:36574093-36574112 | Msa0849510:three_prime_UTR | 20.0% |
| !!! | ACTATTTTTAAAGACTAAAG+AGG | - | chr5_4:36574226-36574245 | None:intergenic | 20.0% |
| ! | GTATTATTATTAGTGCTACA+CGG | - | chr5_4:36571771-36571790 | None:intergenic | 25.0% |
| ! | CTAATAATAATACATGTACC+TGG | + | chr5_4:36571778-36571797 | Msa0849510:CDS | 25.0% |
| ! | ATAAAAATTACACCTTTGGA+CGG | - | chr5_4:36572062-36572081 | None:intergenic | 25.0% |
| ! | CTTACATTTCTTGAGATAAA+AGG | - | chr5_4:36572219-36572238 | None:intergenic | 25.0% |
| ! | AGATTGTACTTCTAACATAT+CGG | - | chr5_4:36572286-36572305 | None:intergenic | 25.0% |
| ! | AATATGAGACATTCAATATG+CGG | + | chr5_4:36572374-36572393 | Msa0849510:intron | 25.0% |
| ! | ATAGTTACCTCTTAATGAAT+AGG | + | chr5_4:36572720-36572739 | Msa0849510:intron | 25.0% |
| !! | TACTTTTCGTTCATAAATTG+TGG | + | chr5_4:36572905-36572924 | Msa0849510:intron | 25.0% |
| !! | TTTGTGTTCTTTTTCTACAT+TGG | + | chr5_4:36573125-36573144 | Msa0849510:intron | 25.0% |
| !!! | TCATTTTTAGGTTTATTCCT+AGG | - | chr5_4:36573272-36573291 | None:intergenic | 25.0% |
| ! | TAAACCTAAAAATGAGCTTA+AGG | + | chr5_4:36573277-36573296 | Msa0849510:intron | 25.0% |
| ! | AAACCTAAAAATGAGCTTAA+GGG | + | chr5_4:36573278-36573297 | Msa0849510:intron | 25.0% |
| !!! | AAAAGAATGGACTATATTGT+TGG | + | chr5_4:36573450-36573469 | Msa0849510:intron | 25.0% |
| ! | TCTCATTCACATGTTTATAT+GGG | + | chr5_4:36573495-36573514 | Msa0849510:intron | 25.0% |
| ! | TTATATGGGGAAATAGTTAT+CGG | + | chr5_4:36573509-36573528 | Msa0849510:intron | 25.0% |
| !! | ATTTACTATTTTCAGTCATC+TGG | + | chr5_4:36573802-36573821 | Msa0849510:intron | 25.0% |
| !! | CATTTTGTATACCATATTTG+GGG | + | chr5_4:36573974-36573993 | Msa0849510:three_prime_UTR | 25.0% |
| !! | GTTTTTGTCATTCACAAATT+AGG | + | chr5_4:36574115-36574134 | Msa0849510:three_prime_UTR | 25.0% |
| !!! | CAAATTAGGAATTTTGATGA+AGG | + | chr5_4:36574129-36574148 | Msa0849510:three_prime_UTR | 25.0% |
| ! | TTACATTATTTCAAAGGATC+AGG | - | chr5_4:36574199-36574218 | None:intergenic | 25.0% |
| ! | GGAACATTACATTATTTCAA+AGG | - | chr5_4:36574205-36574224 | None:intergenic | 25.0% |
| !!! | GTACACATTTTGAAAATCAT+GGG | - | chr5_4:36574257-36574276 | None:intergenic | 25.0% |
| !!! | AGTACACATTTTGAAAATCA+TGG | - | chr5_4:36574258-36574277 | None:intergenic | 25.0% |
| TAAAAATTACACCTTTGGAC+GGG | - | chr5_4:36572061-36572080 | None:intergenic | 30.0% | |
| AATCTGTGTCTCAATATTCT+TGG | - | chr5_4:36572144-36572163 | None:intergenic | 30.0% | |
| ! | GAATATTGAGACACAGATTT+TGG | + | chr5_4:36572145-36572164 | Msa0849510:CDS | 30.0% |
| GGGAGATAAAATTATGTTGA+AGG | - | chr5_4:36572250-36572269 | None:intergenic | 30.0% | |
| ATATCGGAAGTGATAGAAAA+GGG | - | chr5_4:36572270-36572289 | None:intergenic | 30.0% | |
| !! | CTTGTTGGTTTAATTCAGTT+GGG | + | chr5_4:36572644-36572663 | Msa0849510:intron | 30.0% |
| CATTAAGAGGTAACTATAGA+AGG | - | chr5_4:36572717-36572736 | None:intergenic | 30.0% | |
| TTACCTCTTAATGAATAGGA+GGG | + | chr5_4:36572724-36572743 | Msa0849510:intron | 30.0% | |
| CTTGTAGGTTTAATTCAGTT+GGG | + | chr5_4:36572780-36572799 | Msa0849510:intron | 30.0% | |
| TTCTCCTTTGATTACTCTTA+AGG | + | chr5_4:36572837-36572856 | Msa0849510:intron | 30.0% | |
| TCTCCTTTGATTACTCTTAA+GGG | + | chr5_4:36572838-36572857 | Msa0849510:intron | 30.0% | |
| TTTCTTTATTGTGCGAGAAT+GGG | - | chr5_4:36573105-36573124 | None:intergenic | 30.0% | |
| ATTTCTTTATTGTGCGAGAA+TGG | - | chr5_4:36573106-36573125 | None:intergenic | 30.0% | |
| AGTTAGTAACAATGCTCAAA+AGG | - | chr5_4:36573171-36573190 | None:intergenic | 30.0% | |
| CATTGTTACTAACTGTCTAA+GGG | + | chr5_4:36573177-36573196 | Msa0849510:intron | 30.0% | |
| !! | TAGAATTTTAGCGCTATTAG+TGG | - | chr5_4:36573362-36573381 | None:intergenic | 30.0% |
| CTCTCATTCACATGTTTATA+TGG | + | chr5_4:36573494-36573513 | Msa0849510:intron | 30.0% | |
| CTCATTCACATGTTTATATG+GGG | + | chr5_4:36573496-36573515 | Msa0849510:intron | 30.0% | |
| TATATGGGGAAATAGTTATC+GGG | + | chr5_4:36573510-36573529 | Msa0849510:intron | 30.0% | |
| ATACAGTTCTGTGAATATGA+AGG | + | chr5_4:36573536-36573555 | Msa0849510:intron | 30.0% | |
| CTGTGAATATGAAGGTTAAA+TGG | + | chr5_4:36573544-36573563 | Msa0849510:intron | 30.0% | |
| TACAATGCGGATAAAATGAA+GGG | - | chr5_4:36573744-36573763 | None:intergenic | 30.0% | |
| ATACAATGCGGATAAAATGA+AGG | - | chr5_4:36573745-36573764 | None:intergenic | 30.0% | |
| CAGTATGACATAATACAATG+CGG | - | chr5_4:36573757-36573776 | None:intergenic | 30.0% | |
| !!! | TTTACCAACAACCACTTTTT+TGG | + | chr5_4:36574062-36574081 | Msa0849510:three_prime_UTR | 30.0% |
| !!! | TTACCAACAACCACTTTTTT+GGG | + | chr5_4:36574063-36574082 | Msa0849510:three_prime_UTR | 30.0% |
| TAAAAATACCCCCAAAAAAG+TGG | - | chr5_4:36574076-36574095 | None:intergenic | 30.0% | |
| TTATGACTTTCCTCTCATGA+CGG | + | chr5_4:36571913-36571932 | Msa0849510:intron | 35.0% | |
| AAAAATTACACCTTTGGACG+GGG | - | chr5_4:36572060-36572079 | None:intergenic | 35.0% | |
| ! | TCACGTTTACATGTCTTTTC+AGG | + | chr5_4:36572094-36572113 | Msa0849510:intron | 35.0% |
| CATATCGGAAGTGATAGAAA+AGG | - | chr5_4:36572271-36572290 | None:intergenic | 35.0% | |
| ! | TAGCACATTGGTGATATTAG+TGG | + | chr5_4:36572478-36572497 | Msa0849510:intron | 35.0% |
| ACTTGATGCATTAGACATGA+AGG | + | chr5_4:36572594-36572613 | Msa0849510:intron | 35.0% | |
| CCAACTGAATTAAACCAACA+AGG | - | chr5_4:36572646-36572665 | None:intergenic | 35.0% | |
| !! | CCTTGTTGGTTTAATTCAGT+TGG | + | chr5_4:36572643-36572662 | Msa0849510:intron | 35.0% |
| GTTACCTCTTAATGAATAGG+AGG | + | chr5_4:36572723-36572742 | Msa0849510:intron | 35.0% | |
| AGTTTCTTAAGTGACCTTGT+AGG | + | chr5_4:36572765-36572784 | Msa0849510:intron | 35.0% | |
| CCAACTGAATTAAACCTACA+AGG | - | chr5_4:36572782-36572801 | None:intergenic | 35.0% | |
| CCTTGTAGGTTTAATTCAGT+TGG | + | chr5_4:36572779-36572798 | Msa0849510:intron | 35.0% | |
| AGAGTAATCAAAGGAGAAAC+TGG | - | chr5_4:36572835-36572854 | None:intergenic | 35.0% | |
| ACACCCTTAAGAGTAATCAA+AGG | - | chr5_4:36572844-36572863 | None:intergenic | 35.0% | |
| ! | ATTACTCTTAAGGGTGTGTT+TGG | + | chr5_4:36572847-36572866 | Msa0849510:intron | 35.0% |
| ! | AGAAAATCTAAGGGTGTGTT+TGG | - | chr5_4:36573072-36573091 | None:intergenic | 35.0% |
| AGTAGGGACAGAAAATCTAA+GGG | - | chr5_4:36573081-36573100 | None:intergenic | 35.0% | |
| TTCTTTATTGTGCGAGAATG+GGG | - | chr5_4:36573104-36573123 | None:intergenic | 35.0% | |
| GCATTGTTACTAACTGTCTA+AGG | + | chr5_4:36573176-36573195 | Msa0849510:intron | 35.0% | |
| TAATGTGTTAGACTATTGCC+AGG | - | chr5_4:36573225-36573244 | None:intergenic | 35.0% | |
| ! | AGGTTTATTCCTAGGAGTAT+GGG | - | chr5_4:36573264-36573283 | None:intergenic | 35.0% |
| TAGGTTTATTCCTAGGAGTA+TGG | - | chr5_4:36573265-36573284 | None:intergenic | 35.0% | |
| ACAATGCGGATAAAATGAAG+GGG | - | chr5_4:36573743-36573762 | None:intergenic | 35.0% | |
| TACGATATGGCATGAATCTA+TGG | - | chr5_4:36573879-36573898 | None:intergenic | 35.0% | |
| ! | TTTTCACCAGATCTACGATA+TGG | - | chr5_4:36573892-36573911 | None:intergenic | 35.0% |
| TCATCATCAAACCCCAAATA+TGG | - | chr5_4:36573988-36574007 | None:intergenic | 35.0% | |
| GATTTGGAGAATGTTCAACA+AGG | - | chr5_4:36574013-36574032 | None:intergenic | 35.0% | |
| GTTGAACATTCTCCAAATCA+TGG | + | chr5_4:36574014-36574033 | Msa0849510:three_prime_UTR | 35.0% | |
| ACAACACAAAAGCCATGATT+TGG | - | chr5_4:36574029-36574048 | None:intergenic | 35.0% | |
| !!! | TACCAACAACCACTTTTTTG+GGG | + | chr5_4:36574064-36574083 | Msa0849510:three_prime_UTR | 35.0% |
| TGGCATAACAGGCTCTTAAA+AGG | + | chr5_4:36571943-36571962 | Msa0849510:intron | 40.0% | |
| TCTATTTCACTTCTACGCTC+TGG | - | chr5_4:36571990-36572009 | None:intergenic | 40.0% | |
| ! | AAATAGAAGAGCGCATAGCA+TGG | + | chr5_4:36572003-36572022 | Msa0849510:CDS | 40.0% |
| ! | AATAGAAGAGCGCATAGCAT+GGG | + | chr5_4:36572004-36572023 | Msa0849510:CDS | 40.0% |
| ! | TAGGAGTATGAAGACCTTGT+TGG | + | chr5_4:36572629-36572648 | Msa0849510:intron | 40.0% |
| ACACCCTCCTATTCATTAAG+AGG | - | chr5_4:36572730-36572749 | None:intergenic | 40.0% | |
| ! | ATGAATAGGAGGGTGTGTAT+CGG | + | chr5_4:36572734-36572753 | Msa0849510:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr5_4:36573054-36573073 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr5_4:36573058-36573077 | None:intergenic | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr5_4:36573064-36573083 | None:intergenic | 40.0% |
| GAGTAGGGACAGAAAATCTA+AGG | - | chr5_4:36573082-36573101 | None:intergenic | 40.0% | |
| TATTGCCAGGTTTCACTGTA+GGG | - | chr5_4:36573212-36573231 | None:intergenic | 40.0% | |
| !! | CCACCCTTAAGCTCATTTTT+AGG | - | chr5_4:36573284-36573303 | None:intergenic | 40.0% |
| CCTAAAAATGAGCTTAAGGG+TGG | + | chr5_4:36573281-36573300 | Msa0849510:intron | 40.0% | |
| !! | TTTGTTTTTCAGCCGAGATC+CGG | + | chr5_4:36573653-36573672 | Msa0849510:intron | 40.0% |
| TTTCAACAAGCCTTTGCTTC+CGG | - | chr5_4:36573675-36573694 | None:intergenic | 40.0% | |
| CAATGCGGATAAAATGAAGG+GGG | - | chr5_4:36573742-36573761 | None:intergenic | 40.0% | |
| TTCATGCCATATCGTAGATC+TGG | + | chr5_4:36573883-36573902 | Msa0849510:CDS | 40.0% | |
| !!! | ACCAACAACCACTTTTTTGG+GGG | + | chr5_4:36574065-36574084 | Msa0849510:three_prime_UTR | 40.0% |
| ATACATGTACCTGGACTTGC+AGG | + | chr5_4:36571787-36571806 | Msa0849510:CDS | 45.0% | |
| CTTTCTAAACCTGCAAGTCC+AGG | - | chr5_4:36571799-36571818 | None:intergenic | 45.0% | |
| TGATCTTCCTGCTGAAAGAC+AGG | + | chr5_4:36571842-36571861 | Msa0849510:CDS | 45.0% | |
| CGGGGAAGACTAACTTCAAA+AGG | - | chr5_4:36572042-36572061 | None:intergenic | 45.0% | |
| CAATGTGCTACAAGCGAAAG+GGG | - | chr5_4:36572468-36572487 | None:intergenic | 45.0% | |
| CCAATGTGCTACAAGCGAAA+GGG | - | chr5_4:36572469-36572488 | None:intergenic | 45.0% | |
| ACCAATGTGCTACAAGCGAA+AGG | - | chr5_4:36572470-36572489 | None:intergenic | 45.0% | |
| GTCTTCATACTCCTAGAGGA+TGG | - | chr5_4:36572624-36572643 | None:intergenic | 45.0% | |
| CAAGGTCTTCATACTCCTAG+AGG | - | chr5_4:36572628-36572647 | None:intergenic | 45.0% | |
| ! | CTCTTAAGGGTGTGTTTGGA+TGG | + | chr5_4:36572851-36572870 | Msa0849510:intron | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | + | chr5_4:36572854-36572873 | Msa0849510:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | + | chr5_4:36572855-36572874 | Msa0849510:intron | 45.0% |
| TGTGTTTGGATGGAGGGTTT+AGG | + | chr5_4:36572861-36572880 | Msa0849510:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | + | chr5_4:36572865-36572884 | Msa0849510:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr5_4:36573053-36573072 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr5_4:36573055-36573074 | None:intergenic | 45.0% | |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | - | chr5_4:36573065-36573084 | None:intergenic | 45.0% |
| CTATTGCCAGGTTTCACTGT+AGG | - | chr5_4:36573213-36573232 | None:intergenic | 45.0% | |
| ATGAGCTTAAGGGTGGTTAC+AGG | + | chr5_4:36573288-36573307 | Msa0849510:intron | 45.0% | |
| GAGGAAGAGAAATGCTGCAA+AGG | + | chr5_4:36573852-36573871 | Msa0849510:CDS | 45.0% | |
| TCGTAGATCTGGTGAAAACG+TGG | + | chr5_4:36573894-36573913 | Msa0849510:CDS | 45.0% | |
| TCTGGTGAAAACGTGGAGTA+AGG | + | chr5_4:36573901-36573920 | Msa0849510:CDS | 45.0% | |
| GGCTGTTGTTAACCCTGTAA+TGG | + | chr5_4:36573922-36573941 | Msa0849510:three_prime_UTR | 45.0% | |
| ACCCCCAAAAAAGTGGTTGT+TGG | - | chr5_4:36574069-36574088 | None:intergenic | 45.0% | |
| !!! | ATTTGAAATTTTAAATTTTA+TGG | + | chr5_4:36573314-36573333 | Msa0849510:intron | 5.0% |
| CTTCCTGCTGAAAGACAGGT+AGG | + | chr5_4:36571846-36571865 | Msa0849510:intron | 50.0% | |
| CTACCTACCTGTCTTTCAGC+AGG | - | chr5_4:36571852-36571871 | None:intergenic | 50.0% | |
| ACGGCATCTTCTGGCATAAC+AGG | + | chr5_4:36571932-36571951 | Msa0849510:intron | 50.0% | |
| !! | AGTTAGTCTTCCCCGTCCAA+AGG | + | chr5_4:36572047-36572066 | Msa0849510:intron | 50.0% |
| AGAGAGAGAAGCAGCAAAGC+AGG | + | chr5_4:36572184-36572203 | Msa0849510:CDS | 50.0% | |
| GAGAGAGAAGCAGCAAAGCA+GGG | + | chr5_4:36572185-36572204 | Msa0849510:CDS | 50.0% | |
| CCCTTTCGCTTGTAGCACAT+TGG | + | chr5_4:36572466-36572485 | Msa0849510:intron | 50.0% | |
| ATGAAGGTGAGCCATCCTCT+AGG | + | chr5_4:36572610-36572629 | Msa0849510:intron | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | + | chr5_4:36572864-36572883 | Msa0849510:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | + | chr5_4:36572866-36572885 | Msa0849510:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | - | chr5_4:36573048-36573067 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | chr5_4:36573049-36573068 | None:intergenic | 50.0% | |
| TTGTGCGAGAATGGGGAGTA+GGG | - | chr5_4:36573097-36573116 | None:intergenic | 50.0% | |
| ATTGTGCGAGAATGGGGAGT+AGG | - | chr5_4:36573098-36573117 | None:intergenic | 50.0% | |
| CAGGTTTCACTGTAGGGTGT+TGG | - | chr5_4:36573206-36573225 | None:intergenic | 50.0% | |
| CAACACCCTACAGTGAAACC+TGG | + | chr5_4:36573204-36573223 | Msa0849510:intron | 50.0% | |
| TTGCTAGCACCCATACTCCT+AGG | + | chr5_4:36573252-36573271 | Msa0849510:intron | 50.0% | |
| ATCCCCTTTCCTCTTGCACA+TGG | + | chr5_4:36573390-36573409 | Msa0849510:intron | 50.0% | |
| TCCCCTTTCCTCTTGCACAT+GGG | + | chr5_4:36573391-36573410 | Msa0849510:intron | 50.0% | |
| TGATTTCCCCCATGTGCAAG+AGG | - | chr5_4:36573402-36573421 | None:intergenic | 50.0% | |
| AAGCCTTTGCTTCCGGATCT+CGG | - | chr5_4:36573668-36573687 | None:intergenic | 50.0% | |
| GGGCGCTATCTTCCATTACA+GGG | - | chr5_4:36573937-36573956 | None:intergenic | 50.0% | |
| TGGGCGCTATCTTCCATTAC+AGG | - | chr5_4:36573938-36573957 | None:intergenic | 50.0% | |
| CCAGAAGATGCCGTCATGAG+AGG | - | chr5_4:36571926-36571945 | None:intergenic | 55.0% | |
| CCTCTCATGACGGCATCTTC+TGG | + | chr5_4:36571923-36571942 | Msa0849510:intron | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | + | chr5_4:36572870-36572889 | Msa0849510:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | + | chr5_4:36572871-36572890 | Msa0849510:intron | 55.0% | |
| CCCCATGTGCAAGAGGAAAG+GGG | - | chr5_4:36573395-36573414 | None:intergenic | 55.0% | |
| CCCCTTTCCTCTTGCACATG+GGG | + | chr5_4:36573392-36573411 | Msa0849510:intron | 55.0% | |
| CCCCCATGTGCAAGAGGAAA+GGG | - | chr5_4:36573396-36573415 | None:intergenic | 55.0% | |
| CCCTTTCCTCTTGCACATGG+GGG | + | chr5_4:36573393-36573412 | Msa0849510:intron | 55.0% | |
| TCCCCCATGTGCAAGAGGAA+AGG | - | chr5_4:36573397-36573416 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr5_4:36572874-36572893 | Msa0849510:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr5_4:36572875-36572894 | Msa0849510:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr5_4:36572876-36572895 | Msa0849510:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr5_4:36572876-36572895 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr5_4:36572875-36572894 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr5_4:36572874-36572893 | None:intergenic | 60.0% | |
| CAGCCGAGATCCGGAAGCAA+AGG | + | chr5_4:36573662-36573681 | Msa0849510:intron | 60.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr5_4:36572879-36572898 | Msa0849510:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr5_4:36572880-36572899 | Msa0849510:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr5_4:36572880-36572899 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr5_4:36572879-36572898 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 36571768 | 36574278 | 36571768 | ID=Msa0849510;Name=Msa0849510 |
| chr5_4 | mRNA | 36571768 | 36574278 | 36571768 | ID=Msa0849510-mRNA-1;Parent=Msa0849510;Name=Msa0849510-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|1|0.8|1|1|1|5|357|146 |
| chr5_4 | exon | 36571768 | 36571863 | 36571768 | ID=Msa0849510-mRNA-1:exon:12021;Parent=Msa0849510-mRNA-1 |
| chr5_4 | exon | 36571954 | 36572028 | 36571954 | ID=Msa0849510-mRNA-1:exon:12022;Parent=Msa0849510-mRNA-1 |
| chr5_4 | exon | 36572116 | 36572233 | 36572116 | ID=Msa0849510-mRNA-1:exon:12023;Parent=Msa0849510-mRNA-1 |
| chr5_4 | exon | 36573665 | 36573711 | 36573665 | ID=Msa0849510-mRNA-1:exon:12024;Parent=Msa0849510-mRNA-1 |
| chr5_4 | exon | 36573817 | 36574278 | 36573817 | ID=Msa0849510-mRNA-1:exon:12025;Parent=Msa0849510-mRNA-1 |
| chr5_4 | CDS | 36571768 | 36571863 | 36571768 | ID=Msa0849510-mRNA-1:cds;Parent=Msa0849510-mRNA-1 |
| chr5_4 | CDS | 36571954 | 36572028 | 36571954 | ID=Msa0849510-mRNA-1:cds;Parent=Msa0849510-mRNA-1 |
| chr5_4 | CDS | 36572116 | 36572233 | 36572116 | ID=Msa0849510-mRNA-1:cds;Parent=Msa0849510-mRNA-1 |
| chr5_4 | CDS | 36573665 | 36573711 | 36573665 | ID=Msa0849510-mRNA-1:cds;Parent=Msa0849510-mRNA-1 |
| chr5_4 | CDS | 36573817 | 36573921 | 36573817 | ID=Msa0849510-mRNA-1:cds;Parent=Msa0849510-mRNA-1 |
| chr5_4 | three_prime_UTR | 36573922 | 36574278 | 36573922 | ID=Msa0849510-mRNA-1:three_prime_utr;Parent=Msa0849510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
