Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361100 | XP_003603876.1 | 100.000 | 163 | 0 | 0 | 1 | 163 | 321 | 483 | 4.06e-110 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361100 | sp|Q84JG2|SWI3B_ARATH | 50.327 | 153 | 71 | 2 | 3 | 154 | 315 | 463 | 1.41e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361100 | G7J6G8 | 100.000 | 163 | 0 | 0 | 1 | 163 | 321 | 483 | 1.94e-110 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa1361100 | 0.825872 | 3.698638e-54 | -8.615850e-47 |
| Msa0004920 | Msa1361100 | 0.818935 | 1.511753e-52 | -8.615850e-47 |
| Msa0009430 | Msa1361100 | 0.821670 | 3.569515e-53 | -8.615850e-47 |
| Msa0025730 | Msa1361100 | 0.816960 | 4.223314e-52 | -8.615850e-47 |
| Msa0032260 | Msa1361100 | 0.803420 | 3.515955e-49 | -8.615850e-47 |
| Msa0056470 | Msa1361100 | 0.827736 | 1.326508e-54 | -8.615850e-47 |
| Msa0064350 | Msa1361100 | 0.826058 | 3.341162e-54 | -8.615850e-47 |
| Msa0064380 | Msa1361100 | 0.824389 | 8.287618e-54 | -8.615850e-47 |
| Msa0073480 | Msa1361100 | 0.812437 | 4.242331e-51 | -8.615850e-47 |
| Msa0076000 | Msa1361100 | 0.802199 | 6.283780e-49 | -8.615850e-47 |
| Msa0094470 | Msa1361100 | 0.805904 | 1.065594e-49 | -8.615850e-47 |
| Msa0115990 | Msa1361100 | 0.850130 | 2.071637e-60 | -8.615850e-47 |
| Msa1356140 | Msa1361100 | 0.801617 | 8.276163e-49 | -8.615850e-47 |
| Msa1356440 | Msa1361100 | 0.839425 | 1.596550e-57 | -8.615850e-47 |
| Msa1361100 | Msa1370740 | 0.800012 | 1.759546e-48 | -8.615850e-47 |
| Msa1361100 | Msa1386780 | 0.806728 | 7.144758e-50 | -8.615850e-47 |
| Msa1361100 | Msa1391410 | 0.806627 | 7.503742e-50 | -8.615850e-47 |
| Msa1361100 | Msa1394290 | 0.808285 | 3.338212e-50 | -8.615850e-47 |
| Msa1361100 | Msa1397810 | 0.803397 | 3.554730e-49 | -8.615850e-47 |
| Msa1361100 | Msa1403680 | 0.804684 | 1.919854e-49 | -8.615850e-47 |
| Msa1361100 | Msa1407460 | 0.813761 | 2.173561e-51 | -8.615850e-47 |
| Msa1361100 | Msa1432420 | 0.809828 | 1.559790e-50 | -8.615850e-47 |
| Msa1361100 | Msa1443780 | 0.833623 | 4.794698e-56 | -8.615850e-47 |
| Msa1361100 | Msa1451560 | 0.811392 | 7.163111e-51 | -8.615850e-47 |
| Msa1361100 | Msa1460630 | 0.821961 | 3.056653e-53 | -8.615850e-47 |
| Msa1361100 | Msa1461280 | 0.830852 | 2.325831e-55 | -8.615850e-47 |
| Msa0607050 | Msa1361100 | 0.850564 | 1.565013e-60 | -8.615850e-47 |
| Msa0623700 | Msa1361100 | 0.802725 | 4.894542e-49 | -8.615850e-47 |
| Msa0647500 | Msa1361100 | 0.856334 | 3.450738e-62 | -8.615850e-47 |
| Msa0649490 | Msa1361100 | 0.832657 | 8.340612e-56 | -8.615850e-47 |
| Msa0661300 | Msa1361100 | 0.811784 | 5.888293e-51 | -8.615850e-47 |
| Msa0662500 | Msa1361100 | 0.819280 | 1.262028e-52 | -8.615850e-47 |
| Msa0666270 | Msa1361100 | 0.802531 | 5.367182e-49 | -8.615850e-47 |
| Msa0690150 | Msa1361100 | 0.865571 | 5.360099e-65 | -8.615850e-47 |
| Msa0691900 | Msa1361100 | 0.817175 | 3.778061e-52 | -8.615850e-47 |
| Msa0692840 | Msa1361100 | 0.824387 | 8.298938e-54 | -8.615850e-47 |
| Msa0692940 | Msa1361100 | 0.801367 | 9.311498e-49 | -8.615850e-47 |
| Msa0709400 | Msa1361100 | 0.835813 | 1.348214e-56 | -8.615850e-47 |
| Msa0709500 | Msa1361100 | 0.835807 | 1.353590e-56 | -8.615850e-47 |
| Msa0724830 | Msa1361100 | 0.803722 | 3.044191e-49 | -8.615850e-47 |
| Msa0761940 | Msa1361100 | 0.815504 | 8.935432e-52 | -8.615850e-47 |
| Msa0783790 | Msa1361100 | 0.805391 | 1.365520e-49 | -8.615850e-47 |
| Msa0784200 | Msa1361100 | 0.817647 | 2.958526e-52 | -8.615850e-47 |
| Msa0788850 | Msa1361100 | 0.813834 | 2.094190e-51 | -8.615850e-47 |
| Msa0790850 | Msa1361100 | 0.833873 | 4.151556e-56 | -8.615850e-47 |
| Msa0790990 | Msa1361100 | 0.807846 | 4.139653e-50 | -8.615850e-47 |
| Msa0794670 | Msa1361100 | 0.813699 | 2.242952e-51 | -8.615850e-47 |
| Msa0801110 | Msa1361100 | 0.804611 | 1.988272e-49 | -8.615850e-47 |
| Msa0818310 | Msa1361100 | 0.818153 | 2.273574e-52 | -8.615850e-47 |
| Msa0129060 | Msa1361100 | 0.813097 | 3.040751e-51 | -8.615850e-47 |
| Msa0140650 | Msa1361100 | 0.804815 | 1.802118e-49 | -8.615850e-47 |
| Msa0140820 | Msa1361100 | 0.804115 | 2.521501e-49 | -8.615850e-47 |
| Msa0149200 | Msa1361100 | 0.817807 | 2.722845e-52 | -8.615850e-47 |
| Msa0150300 | Msa1361100 | 0.813180 | 2.915618e-51 | -8.615850e-47 |
| Msa0184780 | Msa1361100 | 0.817738 | 2.822802e-52 | -8.615850e-47 |
| Msa0191050 | Msa1361100 | 0.862014 | 6.837367e-64 | -8.615850e-47 |
| Msa0195720 | Msa1361100 | 0.811646 | 6.308802e-51 | -8.615850e-47 |
| Msa0199690 | Msa1361100 | 0.800999 | 1.107266e-48 | -8.615850e-47 |
| Msa0199880 | Msa1361100 | 0.807681 | 4.488343e-50 | -8.615850e-47 |
| Msa0229760 | Msa1361100 | 0.809025 | 2.319568e-50 | -8.615850e-47 |
| Msa0233350 | Msa1361100 | 0.855036 | 8.257018e-62 | -8.615850e-47 |
| Msa1239910 | Msa1361100 | 0.820912 | 5.337210e-53 | -8.615850e-47 |
| Msa1244600 | Msa1361100 | 0.802151 | 6.427884e-49 | -8.615850e-47 |
| Msa1255040 | Msa1361100 | -0.858570 | 7.524144e-63 | -8.615850e-47 |
| Msa1257510 | Msa1361100 | 0.821090 | 4.857965e-53 | -8.615850e-47 |
| Msa1267430 | Msa1361100 | 0.829148 | 6.053390e-55 | -8.615850e-47 |
| Msa1275540 | Msa1361100 | 0.800656 | 1.301035e-48 | -8.615850e-47 |
| Msa1283170 | Msa1361100 | 0.818800 | 1.622349e-52 | -8.615850e-47 |
| Msa1294120 | Msa1361100 | 0.817151 | 3.826869e-52 | -8.615850e-47 |
| Msa1294480 | Msa1361100 | 0.821864 | 3.218425e-53 | -8.615850e-47 |
| Msa1295490 | Msa1361100 | -0.819017 | 1.448464e-52 | -8.615850e-47 |
| Msa1304820 | Msa1361100 | 0.819053 | 1.421004e-52 | -8.615850e-47 |
| Msa1305660 | Msa1361100 | 0.804410 | 2.189052e-49 | -8.615850e-47 |
| Msa1305710 | Msa1361100 | 0.823325 | 1.471787e-53 | -8.615850e-47 |
| Msa1331910 | Msa1361100 | 0.801053 | 1.079511e-48 | -8.615850e-47 |
| Msa0366890 | Msa1361100 | 0.843340 | 1.488407e-58 | -8.615850e-47 |
| Msa0369450 | Msa1361100 | 0.811734 | 6.035771e-51 | -8.615850e-47 |
| Msa0372660 | Msa1361100 | 0.805018 | 1.634565e-49 | -8.615850e-47 |
| Msa0376310 | Msa1361100 | 0.801938 | 7.110707e-49 | -8.615850e-47 |
| Msa0376450 | Msa1361100 | -0.801871 | 7.338947e-49 | -8.615850e-47 |
| Msa0385580 | Msa1361100 | 0.801102 | 1.054818e-48 | -8.615850e-47 |
| Msa0387730 | Msa1361100 | 0.826887 | 2.119599e-54 | -8.615850e-47 |
| Msa0414800 | Msa1361100 | 0.801006 | 1.103464e-48 | -8.615850e-47 |
| Msa0425220 | Msa1361100 | 0.820645 | 6.148118e-53 | -8.615850e-47 |
| Msa0439200 | Msa1361100 | 0.809799 | 1.582549e-50 | -8.615850e-47 |
| Msa0469990 | Msa1361100 | 0.811338 | 7.359937e-51 | -8.615850e-47 |
| Msa0471440 | Msa1361100 | 0.841983 | 3.412000e-58 | -8.615850e-47 |
| Msa0471720 | Msa1361100 | -0.801902 | 7.230399e-49 | -8.615850e-47 |
| Msa0477080 | Msa1361100 | 0.820228 | 7.663845e-53 | -8.615850e-47 |
| Msa1012320 | Msa1361100 | 0.812138 | 4.930059e-51 | -8.615850e-47 |
| Msa1013400 | Msa1361100 | 0.844704 | 6.410407e-59 | -8.615850e-47 |
| Msa1014420 | Msa1361100 | 0.816141 | 6.444062e-52 | -8.615850e-47 |
| Msa1040400 | Msa1361100 | 0.812247 | 4.667446e-51 | -8.615850e-47 |
| Msa1078270 | Msa1361100 | 0.800016 | 1.756436e-48 | -8.615850e-47 |
| Msa1081150 | Msa1361100 | 0.815020 | 1.144769e-51 | -8.615850e-47 |
| Msa1083150 | Msa1361100 | 0.802842 | 4.631414e-49 | -8.615850e-47 |
| Msa1091530 | Msa1361100 | 0.809811 | 1.573634e-50 | -8.615850e-47 |
| Msa1093530 | Msa1361100 | 0.831862 | 1.312206e-55 | -8.615850e-47 |
| Msa1101600 | Msa1361100 | 0.808935 | 2.425656e-50 | -8.615850e-47 |
| Msa0267970 | Msa1361100 | 0.835478 | 1.639133e-56 | -8.615850e-47 |
| Msa0273900 | Msa1361100 | 0.805253 | 1.459205e-49 | -8.615850e-47 |
| Msa0280610 | Msa1361100 | 0.827331 | 1.659779e-54 | -8.615850e-47 |
| Msa0291500 | Msa1361100 | 0.804239 | 2.376598e-49 | -8.615850e-47 |
| Msa0312650 | Msa1361100 | 0.848959 | 4.395376e-60 | -8.615850e-47 |
| Msa0314720 | Msa1361100 | 0.811371 | 7.240376e-51 | -8.615850e-47 |
| Msa0333870 | Msa1361100 | 0.806564 | 7.738543e-50 | -8.615850e-47 |
| Msa1121440 | Msa1361100 | 0.800450 | 1.433406e-48 | -8.615850e-47 |
| Msa1124960 | Msa1361100 | 0.830305 | 3.165184e-55 | -8.615850e-47 |
| Msa1125760 | Msa1361100 | 0.825760 | 3.931714e-54 | -8.615850e-47 |
| Msa1126510 | Msa1361100 | 0.817044 | 4.044436e-52 | -8.615850e-47 |
| Msa1126770 | Msa1361100 | 0.815449 | 9.191681e-52 | -8.615850e-47 |
| Msa1127890 | Msa1361100 | 0.817529 | 3.145771e-52 | -8.615850e-47 |
| Msa1134110 | Msa1361100 | 0.803788 | 2.949646e-49 | -8.615850e-47 |
| Msa1147280 | Msa1361100 | 0.800039 | 1.737659e-48 | -8.615850e-47 |
| Msa1165870 | Msa1361100 | 0.819421 | 1.171563e-52 | -8.615850e-47 |
| Msa1165920 | Msa1361100 | 0.803650 | 3.149809e-49 | -8.615850e-47 |
| Msa1165940 | Msa1361100 | 0.851611 | 7.929497e-61 | -8.615850e-47 |
| Msa1166860 | Msa1361100 | 0.809686 | 1.673407e-50 | -8.615850e-47 |
| Msa1170410 | Msa1361100 | 0.802472 | 5.520212e-49 | -8.615850e-47 |
| Msa1171360 | Msa1361100 | 0.835478 | 1.639629e-56 | -8.615850e-47 |
| Msa1187840 | Msa1361100 | 0.805127 | 1.550571e-49 | -8.615850e-47 |
| Msa1207270 | Msa1361100 | 0.826230 | 3.040632e-54 | -8.615850e-47 |
| Msa1209010 | Msa1361100 | 0.802712 | 4.926212e-49 | -8.615850e-47 |
| Msa1211890 | Msa1361100 | 0.818374 | 2.026683e-52 | -8.615850e-47 |
| Msa1218600 | Msa1361100 | 0.851979 | 6.235833e-61 | -8.615850e-47 |
| Msa0497490 | Msa1361100 | 0.804385 | 2.215950e-49 | -8.615850e-47 |
| Msa0518390 | Msa1361100 | 0.834674 | 2.614347e-56 | -8.615850e-47 |
| Msa0518450 | Msa1361100 | 0.831224 | 1.884755e-55 | -8.615850e-47 |
| Msa0521050 | Msa1361100 | 0.831522 | 1.591687e-55 | -8.615850e-47 |
| Msa0548240 | Msa1361100 | 0.823675 | 1.219305e-53 | -8.615850e-47 |
| Msa0549470 | Msa1361100 | 0.802420 | 5.657995e-49 | -8.615850e-47 |
| Msa0552810 | Msa1361100 | 0.804905 | 1.725706e-49 | -8.615850e-47 |
| Msa0553050 | Msa1361100 | 0.822396 | 2.422201e-53 | -8.615850e-47 |
| Msa0573220 | Msa1361100 | 0.801078 | 1.066778e-48 | -8.615850e-47 |
| Msa0575170 | Msa1361100 | 0.801946 | 7.083187e-49 | -8.615850e-47 |
| Msa0601290 | Msa1361100 | 0.804449 | 2.148390e-49 | -8.615850e-47 |
| Msa0849500 | Msa1361100 | 0.810824 | 9.512885e-51 | -8.615850e-47 |
| Msa0849510 | Msa1361100 | 0.830826 | 2.359164e-55 | -8.615850e-47 |
| Msa0858770 | Msa1361100 | 0.831760 | 1.390143e-55 | -8.615850e-47 |
| Msa0902760 | Msa1361100 | 0.829611 | 4.671960e-55 | -8.615850e-47 |
| Msa0933230 | Msa1361100 | 0.803911 | 2.780442e-49 | -8.615850e-47 |
| Msa0933310 | Msa1361100 | 0.816939 | 4.270756e-52 | -8.615850e-47 |
| Msa0967650 | Msa1361100 | -0.801292 | 9.643701e-49 | -8.615850e-47 |
| Msa0968590 | Msa1361100 | 0.842364 | 2.704789e-58 | -8.615850e-47 |
| Msa0970030 | Msa1361100 | 0.841267 | 5.268999e-58 | -8.615850e-47 |
| Msa0971090 | Msa1361100 | 0.810829 | 9.489020e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361100 | MtrunA17_Chr3g0144301 | 100.000 | 163 | 0 | 0 | 1 | 163 | 321 | 483 | 3.74e-114 | 332 |
| Msa1361100 | MtrunA17_Chr5g0438861 | 93.865 | 163 | 10 | 0 | 1 | 163 | 271 | 433 | 8.28e-100 | 293 |
| Msa1361100 | MtrunA17_Chr6g0470211 | 92.308 | 104 | 8 | 0 | 60 | 163 | 108 | 211 | 5.57e-63 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361100 | AT2G33610.1 | 50.327 | 153 | 71 | 2 | 3 | 154 | 315 | 463 | 1.43e-34 | 126 |
Find 41 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGTTAACTATTGATCTT+AGG | 0.235296 | tig0017334:-33853 | Msa1361100:three_prime_UTR |
| GAAACTTTCATACCGTTTCT+AGG | 0.258658 | tig0017334:+33673 | None:intergenic |
| GGCTGCTTTCCTTTCTGCTT+TGG | 0.304195 | tig0017334:-34597 | Msa1361100:CDS |
| TTCTGAGGTTACAGAAGTTC+AGG | 0.308719 | tig0017334:-34159 | Msa1361100:intron |
| GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | tig0017334:-34593 | Msa1361100:CDS |
| GAGAAGGCAATCATGTAAAA+AGG | 0.339330 | tig0017334:-33894 | Msa1361100:CDS |
| GGAGTGCAGACTAATTAAAA+AGG | 0.384182 | tig0017334:+33807 | None:intergenic |
| TGAGGATTTAGACGTGCTAA+TGG | 0.416011 | tig0017334:-34010 | Msa1361100:CDS |
| CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | tig0017334:-34588 | Msa1361100:CDS |
| TCTTCGTTTGCTCCAACTGC+TGG | 0.436192 | tig0017334:+33977 | None:intergenic |
| GAAAGAACCTGAGCCATGAT+AGG | 0.443755 | tig0017334:+34920 | None:intergenic |
| TTGCACGCAATAAAGATCCT+TGG | 0.465240 | tig0017334:+34225 | None:intergenic |
| ATCTGAAGCATTACCACCAT+TGG | 0.471038 | tig0017334:+34253 | None:intergenic |
| AATCAACTAGAATTAATTAC+CGG | 0.474504 | tig0017334:-34511 | Msa1361100:CDS |
| TCTAGTTGATTTGTAAACAT+TGG | 0.479041 | tig0017334:+34523 | None:intergenic |
| CAAAATTGATAAGCTTGTCC+TGG | 0.486513 | tig0017334:+34031 | None:intergenic |
| CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | tig0017334:-34592 | Msa1361100:CDS |
| TGATTGCCTTCTCCGGTCGT+TGG | 0.518632 | tig0017334:+33904 | None:intergenic |
| GATGCTGCTGTTGCATCCAA+TGG | 0.519252 | tig0017334:-34269 | Msa1361100:CDS |
| ATAAAAGATTGAGCTGATCA+AGG | 0.521081 | tig0017334:+33944 | None:intergenic |
| GGATGCTAGCAATCCTATCA+TGG | 0.529881 | tig0017334:-34933 | Msa1361100:CDS |
| TAGCAATCCTATCATGGCTC+AGG | 0.533854 | tig0017334:-34927 | Msa1361100:intron |
| AAAACATCTGCACCAACGAC+CGG | 0.535739 | tig0017334:-33916 | Msa1361100:CDS |
| TCTGCACCAACGACCGGAGA+AGG | 0.536832 | tig0017334:-33910 | Msa1361100:CDS |
| AGCACATTTCTGCCTAGAAA+CGG | 0.541298 | tig0017334:-33685 | Msa1361100:three_prime_UTR |
| TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | tig0017334:-34585 | Msa1361100:CDS |
| TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | tig0017334:-34207 | Msa1361100:CDS |
| CCTTGCTGCAATGTATTCCT+CGG | 0.560596 | tig0017334:+34482 | None:intergenic |
| ATGTATTCCTCGGAAATGAC+CGG | 0.561368 | tig0017334:+34492 | None:intergenic |
| CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | tig0017334:+34588 | None:intergenic |
| GGTGGGAGGGTAGATAAATG+TGG | 0.574916 | tig0017334:+33632 | None:intergenic |
| GACGGAGGTTGCACAAGCTG+CGG | 0.582049 | tig0017334:-34570 | Msa1361100:CDS |
| AATGCTTCAGATTCTATCCA+AGG | 0.586687 | tig0017334:-34242 | Msa1361100:CDS |
| CAATATCTCATATCAACTGT+AGG | 0.590614 | tig0017334:-33735 | Msa1361100:three_prime_UTR |
| GATTTCGCAAGAAAAGCAAA+CGG | 0.605076 | tig0017334:+33786 | None:intergenic |
| TTAATTACCGGTCATTTCCG+AGG | 0.609744 | tig0017334:-34499 | Msa1361100:CDS |
| AATGTGTCTCACACCTCTTG+CGG | 0.617103 | tig0017334:-34954 | Msa1361100:CDS |
| GGATTGCTAGCATCCGCAAG+AGG | 0.621759 | tig0017334:+34941 | None:intergenic |
| CCGAGGAATACATTGCAGCA+AGG | 0.638324 | tig0017334:-34482 | Msa1361100:intron |
| TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | tig0017334:-34192 | Msa1361100:CDS |
| GCTGCTGTTGCATCCAATGG+TGG | 0.695124 | tig0017334:-34266 | Msa1361100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAATTCAAAGAAAACA+AGG | + | tig0017334:33709-33728 | None:intergenic | 20.0% |
| !! | ATTTGTGTGTTATAATGTTT+GGG | - | tig0017334:33743-33762 | Msa1361100:three_prime_UTR | 20.0% |
| !! | TTATTTGTTCAAATTATTGC+AGG | - | tig0017334:33970-33989 | Msa1361100:CDS | 20.0% |
| !! | AATCAACTAGAATTAATTAC+CGG | - | tig0017334:34077-34096 | Msa1361100:intron | 20.0% |
| !! | AATCTGTCATATATCTTAAT+AGG | - | tig0017334:34186-34205 | Msa1361100:CDS | 20.0% |
| !! | ATCTGTCATATATCTTAATA+GGG | - | tig0017334:34187-34206 | Msa1361100:CDS | 20.0% |
| !! | TAATAATCTTTGCTGAATAT+TGG | - | tig0017334:34508-34527 | Msa1361100:CDS | 20.0% |
| !!! | GTTTCAAATATATTTTGCTT+AGG | - | tig0017334:34933-34952 | Msa1361100:CDS | 20.0% |
| !! | TAAACAATTCAAAGAAAACA+AGG | + | tig0017334:33709-33728 | None:intergenic | 20.0% |
| !! | ATTTGTGTGTTATAATGTTT+GGG | - | tig0017334:33743-33762 | Msa1361100:three_prime_UTR | 20.0% |
| !! | TTATTTGTTCAAATTATTGC+AGG | - | tig0017334:33970-33989 | Msa1361100:CDS | 20.0% |
| !! | AATCAACTAGAATTAATTAC+CGG | - | tig0017334:34077-34096 | Msa1361100:intron | 20.0% |
| !! | AATCTGTCATATATCTTAAT+AGG | - | tig0017334:34186-34205 | Msa1361100:CDS | 20.0% |
| !! | ATCTGTCATATATCTTAATA+GGG | - | tig0017334:34187-34206 | Msa1361100:CDS | 20.0% |
| !! | TAATAATCTTTGCTGAATAT+TGG | - | tig0017334:34508-34527 | Msa1361100:CDS | 20.0% |
| !!! | GTTTCAAATATATTTTGCTT+AGG | - | tig0017334:34933-34952 | Msa1361100:CDS | 20.0% |
| ! | CATTTGTGTGTTATAATGTT+TGG | - | tig0017334:33742-33761 | Msa1361100:three_prime_UTR | 25.0% |
| ! | TTTGTGTGTTATAATGTTTG+GGG | - | tig0017334:33744-33763 | Msa1361100:three_prime_UTR | 25.0% |
| ! | AGAACAATTGGAATTTGATT+CGG | + | tig0017334:33819-33838 | None:intergenic | 25.0% |
| ! | AATCATTTGTCATTCAACAA+GGG | + | tig0017334:33923-33942 | None:intergenic | 25.0% |
| ! | AAATCATTTGTCATTCAACA+AGG | + | tig0017334:33924-33943 | None:intergenic | 25.0% |
| !!! | TCTAGTTGATTTGTAAACAT+TGG | + | tig0017334:34068-34087 | None:intergenic | 25.0% |
| !!! | CGATTTAGTGTTTTATTTGA+TGG | - | tig0017334:34467-34486 | Msa1361100:intron | 25.0% |
| ! | TCTATAGATGAAAAATATCC+AGG | - | tig0017334:34539-34558 | Msa1361100:CDS | 25.0% |
| ! | CTTAGTTAACTATTGATCTT+AGG | - | tig0017334:34735-34754 | Msa1361100:intron | 25.0% |
| ! | CATTTGTGTGTTATAATGTT+TGG | - | tig0017334:33742-33761 | Msa1361100:three_prime_UTR | 25.0% |
| ! | TTTGTGTGTTATAATGTTTG+GGG | - | tig0017334:33744-33763 | Msa1361100:three_prime_UTR | 25.0% |
| ! | AGAACAATTGGAATTTGATT+CGG | + | tig0017334:33819-33838 | None:intergenic | 25.0% |
| ! | AATCATTTGTCATTCAACAA+GGG | + | tig0017334:33923-33942 | None:intergenic | 25.0% |
| ! | AAATCATTTGTCATTCAACA+AGG | + | tig0017334:33924-33943 | None:intergenic | 25.0% |
| !!! | TCTAGTTGATTTGTAAACAT+TGG | + | tig0017334:34068-34087 | None:intergenic | 25.0% |
| !!! | CGATTTAGTGTTTTATTTGA+TGG | - | tig0017334:34467-34486 | Msa1361100:intron | 25.0% |
| ! | TCTATAGATGAAAAATATCC+AGG | - | tig0017334:34539-34558 | Msa1361100:CDS | 25.0% |
| ! | CTTAGTTAACTATTGATCTT+AGG | - | tig0017334:34735-34754 | Msa1361100:intron | 25.0% |
| TTGATTACGTGTAGCATTAA+AGG | - | tig0017334:33784-33803 | Msa1361100:three_prime_UTR | 30.0% | |
| GAATCAAATTCCAATTGTTC+TGG | - | tig0017334:33818-33837 | Msa1361100:three_prime_UTR | 30.0% | |
| CTGTCTTAATTCTTAGTAGT+TGG | - | tig0017334:33846-33865 | Msa1361100:three_prime_UTR | 30.0% | |
| TAATAGGGTTTATCTCGAAA+TGG | - | tig0017334:34202-34221 | Msa1361100:CDS | 30.0% | |
| ! | GTACACTTCATTAGTTTGAA+TGG | - | tig0017334:34244-34263 | Msa1361100:CDS | 30.0% |
| ! | TTCATTAGTTTGAATGGTTC+CGG | - | tig0017334:34250-34269 | Msa1361100:CDS | 30.0% |
| AATCCGAGTTTAAAGATTTC+CGG | + | tig0017334:34272-34291 | None:intergenic | 30.0% | |
| ! | TCGGATTTTCTCATTAGAAA+TGG | - | tig0017334:34285-34304 | Msa1361100:intron | 30.0% |
| ATAAAAGATTGAGCTGATCA+AGG | + | tig0017334:34647-34666 | None:intergenic | 30.0% | |
| CAATATCTCATATCAACTGT+AGG | - | tig0017334:34853-34872 | Msa1361100:intron | 30.0% | |
| TTGATTACGTGTAGCATTAA+AGG | - | tig0017334:33784-33803 | Msa1361100:three_prime_UTR | 30.0% | |
| GAATCAAATTCCAATTGTTC+TGG | - | tig0017334:33818-33837 | Msa1361100:three_prime_UTR | 30.0% | |
| CTGTCTTAATTCTTAGTAGT+TGG | - | tig0017334:33846-33865 | Msa1361100:three_prime_UTR | 30.0% | |
| TAATAGGGTTTATCTCGAAA+TGG | - | tig0017334:34202-34221 | Msa1361100:CDS | 30.0% | |
| ! | GTACACTTCATTAGTTTGAA+TGG | - | tig0017334:34244-34263 | Msa1361100:CDS | 30.0% |
| ! | TTCATTAGTTTGAATGGTTC+CGG | - | tig0017334:34250-34269 | Msa1361100:CDS | 30.0% |
| AATCCGAGTTTAAAGATTTC+CGG | + | tig0017334:34272-34291 | None:intergenic | 30.0% | |
| ! | TCGGATTTTCTCATTAGAAA+TGG | - | tig0017334:34285-34304 | Msa1361100:intron | 30.0% |
| ATAAAAGATTGAGCTGATCA+AGG | + | tig0017334:34647-34666 | None:intergenic | 30.0% | |
| CAATATCTCATATCAACTGT+AGG | - | tig0017334:34853-34872 | Msa1361100:intron | 30.0% | |
| GTGAGAATGACATATAACCT+GGG | - | tig0017334:34128-34147 | Msa1361100:intron | 35.0% | |
| ATAACCTGGGCTAAGATTAT+AGG | - | tig0017334:34141-34160 | Msa1361100:intron | 35.0% | |
| AAATCCTATAATCTTAGCCC+AGG | + | tig0017334:34148-34167 | None:intergenic | 35.0% | |
| GTTCCGGAAATCTTTAAACT+CGG | - | tig0017334:34266-34285 | Msa1361100:CDS | 35.0% | |
| AATGCTTCAGATTCTATCCA+AGG | - | tig0017334:34346-34365 | Msa1361100:intron | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | - | tig0017334:34381-34400 | Msa1361100:intron | 35.0% | |
| CTTTGCTGAATATTGGATGT+TGG | - | tig0017334:34515-34534 | Msa1361100:CDS | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | + | tig0017334:34560-34579 | None:intergenic | 35.0% | |
| ! | GGACAAGCTTATCAATTTTG+AGG | - | tig0017334:34560-34579 | Msa1361100:CDS | 35.0% |
| ! | TTTTACATGATTGCCTTCTC+CGG | + | tig0017334:34694-34713 | None:intergenic | 35.0% |
| GAGAAGGCAATCATGTAAAA+AGG | - | tig0017334:34694-34713 | Msa1361100:intron | 35.0% | |
| GGAGTGCAGACTAATTAAAA+AGG | + | tig0017334:34784-34803 | None:intergenic | 35.0% | |
| GATTTCGCAAGAAAAGCAAA+CGG | + | tig0017334:34805-34824 | None:intergenic | 35.0% | |
| GAAACTTTCATACCGTTTCT+AGG | + | tig0017334:34918-34937 | None:intergenic | 35.0% | |
| GTGAGAATGACATATAACCT+GGG | - | tig0017334:34128-34147 | Msa1361100:intron | 35.0% | |
| ATAACCTGGGCTAAGATTAT+AGG | - | tig0017334:34141-34160 | Msa1361100:intron | 35.0% | |
| AAATCCTATAATCTTAGCCC+AGG | + | tig0017334:34148-34167 | None:intergenic | 35.0% | |
| GTTCCGGAAATCTTTAAACT+CGG | - | tig0017334:34266-34285 | Msa1361100:CDS | 35.0% | |
| AATGCTTCAGATTCTATCCA+AGG | - | tig0017334:34346-34365 | Msa1361100:intron | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | - | tig0017334:34381-34400 | Msa1361100:intron | 35.0% | |
| CTTTGCTGAATATTGGATGT+TGG | - | tig0017334:34515-34534 | Msa1361100:CDS | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | + | tig0017334:34560-34579 | None:intergenic | 35.0% | |
| ! | GGACAAGCTTATCAATTTTG+AGG | - | tig0017334:34560-34579 | Msa1361100:CDS | 35.0% |
| ! | TTTTACATGATTGCCTTCTC+CGG | + | tig0017334:34694-34713 | None:intergenic | 35.0% |
| GAGAAGGCAATCATGTAAAA+AGG | - | tig0017334:34694-34713 | Msa1361100:intron | 35.0% | |
| GGAGTGCAGACTAATTAAAA+AGG | + | tig0017334:34784-34803 | None:intergenic | 35.0% | |
| GATTTCGCAAGAAAAGCAAA+CGG | + | tig0017334:34805-34824 | None:intergenic | 35.0% | |
| GAAACTTTCATACCGTTTCT+AGG | + | tig0017334:34918-34937 | None:intergenic | 35.0% | |
| TTAATGACTGTGCTCTGACA+CGG | - | tig0017334:33872-33891 | Msa1361100:exon | 40.0% | |
| TTTGTCATTCAACAAGGGAC+TGG | + | tig0017334:33918-33937 | None:intergenic | 40.0% | |
| TTAATTACCGGTCATTTCCG+AGG | - | tig0017334:34089-34108 | Msa1361100:intron | 40.0% | |
| ATGTATTCCTCGGAAATGAC+CGG | + | tig0017334:34099-34118 | None:intergenic | 40.0% | |
| GGTGAGAATGACATATAACC+TGG | - | tig0017334:34127-34146 | Msa1361100:intron | 40.0% | |
| GAAGTGTACACGATGAACAT+TGG | + | tig0017334:34233-34252 | None:intergenic | 40.0% | |
| ! | ATCTGAAGCATTACCACCAT+TGG | + | tig0017334:34338-34357 | None:intergenic | 40.0% |
| TTGCACGCAATAAAGATCCT+TGG | + | tig0017334:34366-34385 | None:intergenic | 40.0% | |
| CGTGGAAAAAGCAATTTCTG+AGG | - | tig0017334:34414-34433 | Msa1361100:intron | 40.0% | |
| !! | TTCTGAGGTTACAGAAGTTC+AGG | - | tig0017334:34429-34448 | Msa1361100:intron | 40.0% |
| TGAGGATTTAGACGTGCTAA+TGG | - | tig0017334:34578-34597 | Msa1361100:CDS | 40.0% | |
| AGCACATTTCTGCCTAGAAA+CGG | - | tig0017334:34903-34922 | Msa1361100:intron | 40.0% | |
| TTAATGACTGTGCTCTGACA+CGG | - | tig0017334:33872-33891 | Msa1361100:exon | 40.0% | |
| TTTGTCATTCAACAAGGGAC+TGG | + | tig0017334:33918-33937 | None:intergenic | 40.0% | |
| TTAATTACCGGTCATTTCCG+AGG | - | tig0017334:34089-34108 | Msa1361100:intron | 40.0% | |
| ATGTATTCCTCGGAAATGAC+CGG | + | tig0017334:34099-34118 | None:intergenic | 40.0% | |
| GGTGAGAATGACATATAACC+TGG | - | tig0017334:34127-34146 | Msa1361100:intron | 40.0% | |
| GAAGTGTACACGATGAACAT+TGG | + | tig0017334:34233-34252 | None:intergenic | 40.0% | |
| ! | ATCTGAAGCATTACCACCAT+TGG | + | tig0017334:34338-34357 | None:intergenic | 40.0% |
| TTGCACGCAATAAAGATCCT+TGG | + | tig0017334:34366-34385 | None:intergenic | 40.0% | |
| CGTGGAAAAAGCAATTTCTG+AGG | - | tig0017334:34414-34433 | Msa1361100:intron | 40.0% | |
| !! | TTCTGAGGTTACAGAAGTTC+AGG | - | tig0017334:34429-34448 | Msa1361100:intron | 40.0% |
| TGAGGATTTAGACGTGCTAA+TGG | - | tig0017334:34578-34597 | Msa1361100:CDS | 40.0% | |
| AGCACATTTCTGCCTAGAAA+CGG | - | tig0017334:34903-34922 | Msa1361100:intron | 40.0% | |
| GGATGCTAGCAATCCTATCA+TGG | - | tig0017334:33655-33674 | Msa1361100:three_prime_UTR | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | - | tig0017334:33661-33680 | Msa1361100:three_prime_UTR | 45.0% | |
| GAAAGAACCTGAGCCATGAT+AGG | + | tig0017334:33671-33690 | None:intergenic | 45.0% | |
| TCATGGCTCAGGTTCTTTCT+TGG | - | tig0017334:33672-33691 | Msa1361100:three_prime_UTR | 45.0% | |
| GACAGCGATTCCAGAACAAT+TGG | + | tig0017334:33831-33850 | None:intergenic | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | - | tig0017334:33996-34015 | Msa1361100:CDS | 45.0% | |
| CCTTGCTGCAATGTATTCCT+CGG | + | tig0017334:34109-34128 | None:intergenic | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | - | tig0017334:34396-34415 | Msa1361100:intron | 45.0% | |
| AAAACATCTGCACCAACGAC+CGG | - | tig0017334:34672-34691 | Msa1361100:intron | 45.0% | |
| GGATGCTAGCAATCCTATCA+TGG | - | tig0017334:33655-33674 | Msa1361100:three_prime_UTR | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | - | tig0017334:33661-33680 | Msa1361100:three_prime_UTR | 45.0% | |
| GAAAGAACCTGAGCCATGAT+AGG | + | tig0017334:33671-33690 | None:intergenic | 45.0% | |
| TCATGGCTCAGGTTCTTTCT+TGG | - | tig0017334:33672-33691 | Msa1361100:three_prime_UTR | 45.0% | |
| GACAGCGATTCCAGAACAAT+TGG | + | tig0017334:33831-33850 | None:intergenic | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | - | tig0017334:33996-34015 | Msa1361100:CDS | 45.0% | |
| CCTTGCTGCAATGTATTCCT+CGG | + | tig0017334:34109-34128 | None:intergenic | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | - | tig0017334:34396-34415 | Msa1361100:intron | 45.0% | |
| AAAACATCTGCACCAACGAC+CGG | - | tig0017334:34672-34691 | Msa1361100:intron | 45.0% | |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | - | tig0017334:33991-34010 | Msa1361100:CDS | 50.0% |
| GCTTTCCTTTCTGCTTTGGC+AGG | - | tig0017334:33995-34014 | Msa1361100:CDS | 50.0% | |
| CCGAGGAATACATTGCAGCA+AGG | - | tig0017334:34106-34125 | Msa1361100:intron | 50.0% | |
| GATGCTGCTGTTGCATCCAA+TGG | - | tig0017334:34319-34338 | Msa1361100:intron | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | - | tig0017334:34599-34618 | Msa1361100:CDS | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | + | tig0017334:34614-34633 | None:intergenic | 50.0% | |
| ! | GCAAGAGGTGTGAGACACAT+GGG | + | tig0017334:33635-33654 | None:intergenic | 50.0% |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | - | tig0017334:33991-34010 | Msa1361100:CDS | 50.0% |
| GCTTTCCTTTCTGCTTTGGC+AGG | - | tig0017334:33995-34014 | Msa1361100:CDS | 50.0% | |
| CCGAGGAATACATTGCAGCA+AGG | - | tig0017334:34106-34125 | Msa1361100:intron | 50.0% | |
| GATGCTGCTGTTGCATCCAA+TGG | - | tig0017334:34319-34338 | Msa1361100:intron | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | - | tig0017334:34599-34618 | Msa1361100:CDS | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | + | tig0017334:34614-34633 | None:intergenic | 50.0% | |
| GGATTGCTAGCATCCGCAAG+AGG | + | tig0017334:33650-33669 | None:intergenic | 55.0% | |
| CCTTTCTGCTTTGGCAGGGA+CGG | - | tig0017334:34000-34019 | Msa1361100:CDS | 55.0% | |
| GCTGCTGTTGCATCCAATGG+TGG | - | tig0017334:34322-34341 | Msa1361100:intron | 55.0% | |
| TGATTGCCTTCTCCGGTCGT+TGG | + | tig0017334:34687-34706 | None:intergenic | 55.0% | |
| ! | CGCAAGAGGTGTGAGACACA+TGG | + | tig0017334:33636-33655 | None:intergenic | 55.0% |
| GGATTGCTAGCATCCGCAAG+AGG | + | tig0017334:33650-33669 | None:intergenic | 55.0% | |
| CCTTTCTGCTTTGGCAGGGA+CGG | - | tig0017334:34000-34019 | Msa1361100:CDS | 55.0% | |
| GCTGCTGTTGCATCCAATGG+TGG | - | tig0017334:34322-34341 | Msa1361100:intron | 55.0% | |
| TGATTGCCTTCTCCGGTCGT+TGG | + | tig0017334:34687-34706 | None:intergenic | 55.0% | |
| CCGTCCCTGCCAAAGCAGAA+AGG | + | tig0017334:34003-34022 | None:intergenic | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | - | tig0017334:34003-34022 | Msa1361100:CDS | 60.0% | |
| GACGGAGGTTGCACAAGCTG+CGG | - | tig0017334:34018-34037 | Msa1361100:CDS | 60.0% | |
| TCTGCACCAACGACCGGAGA+AGG | - | tig0017334:34678-34697 | Msa1361100:intron | 60.0% | |
| CCGTCCCTGCCAAAGCAGAA+AGG | + | tig0017334:34003-34022 | None:intergenic | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | - | tig0017334:34003-34022 | Msa1361100:CDS | 60.0% | |
| GACGGAGGTTGCACAAGCTG+CGG | - | tig0017334:34018-34037 | Msa1361100:CDS | 60.0% | |
| TCTGCACCAACGACCGGAGA+AGG | - | tig0017334:34678-34697 | Msa1361100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017334 | gene | 33635 | 34975 | 33635 | ID=Msa1361100;Name=Msa1361100 |
| tig0017334 | mRNA | 33635 | 34975 | 33635 | ID=Msa1361100-mRNA-1;Parent=Msa1361100;Name=Msa1361100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.5|0.75|1|1|4|253|163 |
| tig0017334 | exon | 33635 | 34064 | 33635 | ID=Msa1361100-mRNA-1:exon:12258;Parent=Msa1361100-mRNA-1 |
| tig0017334 | exon | 34160 | 34290 | 34160 | ID=Msa1361100-mRNA-1:exon:12257;Parent=Msa1361100-mRNA-1 |
| tig0017334 | exon | 34483 | 34618 | 34483 | ID=Msa1361100-mRNA-1:exon:12256;Parent=Msa1361100-mRNA-1 |
| tig0017334 | exon | 34928 | 34975 | 34928 | ID=Msa1361100-mRNA-1:exon:12255;Parent=Msa1361100-mRNA-1 |
| tig0017334 | CDS | 34928 | 34975 | 34928 | ID=Msa1361100-mRNA-1:cds;Parent=Msa1361100-mRNA-1 |
| tig0017334 | CDS | 34483 | 34618 | 34483 | ID=Msa1361100-mRNA-1:cds;Parent=Msa1361100-mRNA-1 |
| tig0017334 | CDS | 34160 | 34290 | 34160 | ID=Msa1361100-mRNA-1:cds;Parent=Msa1361100-mRNA-1 |
| tig0017334 | CDS | 33888 | 34064 | 33888 | ID=Msa1361100-mRNA-1:cds;Parent=Msa1361100-mRNA-1 |
| tig0017334 | three_prime_UTR | 33635 | 33887 | 33635 | ID=Msa1361100-mRNA-1:three_prime_utr;Parent=Msa1361100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
