Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860880 | XP_003617070.1 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860880 | sp|Q9M2U2|TECR_ARATH | 81.994 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860880 | B7FIH8 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025290 | Msa0860880 | 0.810660 | 1.031918e-50 | -8.615850e-47 |
| Msa0072600 | Msa0860880 | 0.818700 | 1.709113e-52 | -8.615850e-47 |
| Msa0781330 | Msa0860880 | 0.937841 | 1.795520e-98 | -8.615850e-47 |
| Msa0402780 | Msa0860880 | 0.800096 | 1.691642e-48 | -8.615850e-47 |
| Msa0480090 | Msa0860880 | 0.814213 | 1.727187e-51 | -8.615850e-47 |
| Msa0258340 | Msa0860880 | 0.836384 | 9.657215e-57 | -8.615850e-47 |
| Msa0548650 | Msa0860880 | 0.812139 | 4.926974e-51 | -8.615850e-47 |
| Msa0860880 | Msa1460060 | 0.979507 | 4.038033e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860880 | MtrunA17_Chr5g0440411 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Msa0860880 | MtrunA17_Chr6g0464411 | 30.962 | 239 | 131 | 9 | 61 | 288 | 43 | 258 | 2.75e-13 | 68.9 |
| Msa0860880 | MtrunA17_Chr6g0464451 | 28.655 | 171 | 113 | 4 | 140 | 309 | 147 | 309 | 1.53e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860880 | AT3G55360.1 | 81.994 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 0.0 | 540 |
| Msa0860880 | AT5G16010.1 | 30.000 | 130 | 89 | 2 | 139 | 267 | 102 | 230 | 1.06e-12 | 67.4 |
Find 125 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGTGGGTTTGAAAATT+TGG | 0.154935 | 5_4:+59957750 | None:intergenic |
| TTGATATTTCTATCATATTT+TGG | 0.167659 | 5_4:-59954252 | Msa0860880:three_prime_UTR |
| GAATTAGAAGTACCTGAATT+AGG | 0.237978 | 5_4:+59957693 | None:intergenic |
| TTCATTTGAAGGTCACTTAC+AGG | 0.239953 | 5_4:+59955542 | None:intergenic |
| CCATTACGCCAAACGAATTC+TGG | 0.240898 | 5_4:-59955690 | Msa0860880:CDS |
| CTGCCTTGATGGATGCTTCT+TGG | 0.246723 | 5_4:+59956000 | None:intergenic |
| ATGAAGATAGGCTTTGGATT+TGG | 0.247840 | 5_4:-59955524 | Msa0860880:CDS |
| TCCGCAACTGTGCTTATTAC+TGG | 0.262844 | 5_4:-59955613 | Msa0860880:CDS |
| TGAAGATAGGCTTTGGATTT+GGG | 0.293757 | 5_4:-59955523 | Msa0860880:CDS |
| AGTGGAAGAGAGATTGTTAA+AGG | 0.294260 | 5_4:-59957198 | Msa0860880:CDS |
| GTCACTTACAGGGGTGTATA+GGG | 0.307392 | 5_4:+59955553 | None:intergenic |
| TGAAGGTCACTGTGGTTTCT+AGG | 0.313807 | 5_4:-59957221 | Msa0860880:CDS |
| GGTCACTTACAGGGGTGTAT+AGG | 0.327530 | 5_4:+59955552 | None:intergenic |
| GTCCTTGAACGTTACAGTTA+AGG | 0.339195 | 5_4:+59955880 | None:intergenic |
| GGCTACTGTAGCAGATTTGC+AGG | 0.343092 | 5_4:-59956968 | Msa0860880:CDS |
| TTTGTAGGTGCTAGTTCTAT+TGG | 0.346810 | 5_4:-59957326 | Msa0860880:intron |
| ATGTATGCATTAATGGAATA+TGG | 0.358460 | 5_4:+59957850 | None:intergenic |
| CTTCAAATGAAGATAGGCTT+TGG | 0.359794 | 5_4:-59955530 | Msa0860880:CDS |
| TGTGCTTATTACTGGACATT+TGG | 0.362923 | 5_4:-59955605 | Msa0860880:CDS |
| GAAGATTCCTCAGTATAATA+TGG | 0.369628 | 5_4:+59955471 | None:intergenic |
| AAATGTTTCCAGAATTCGTT+TGG | 0.370339 | 5_4:+59955682 | None:intergenic |
| TGCATTAATGGAATATGGTT+AGG | 0.379561 | 5_4:+59957855 | None:intergenic |
| ATTGCAACGCAAACCATTGC+CGG | 0.389032 | 5_4:-59955341 | Msa0860880:CDS |
| CAAAGCCTATCTTCATTTGA+AGG | 0.389390 | 5_4:+59955531 | None:intergenic |
| CCGAAATACTCGTAGACAAC+GGG | 0.390772 | 5_4:+59955773 | None:intergenic |
| TTACACTCTATCCCTAATTC+AGG | 0.391598 | 5_4:-59957705 | Msa0860880:intron |
| CCCGTTGTCTACGAGTATTT+CGG | 0.392516 | 5_4:-59955773 | Msa0860880:CDS |
| CCAGAATTCGTTTGGCGTAA+TGG | 0.397400 | 5_4:+59955690 | None:intergenic |
| CAGGTCAATGTATGCATTAA+TGG | 0.399354 | 5_4:+59957843 | None:intergenic |
| CTTGACACTTCCTGTCCAAC+CGG | 0.402666 | 5_4:-59955975 | Msa0860880:CDS |
| TTGGTGAAGTGGGTGTGTTT+TGG | 0.404400 | 5_4:-59957253 | Msa0860880:five_prime_UTR |
| GTGTACCTGCAGTTGTTTGA+TGG | 0.409094 | 5_4:-59954596 | Msa0860880:intron |
| AGTGTGTTGGTTACACTGTT+TGG | 0.411947 | 5_4:-59957272 | Msa0860880:five_prime_UTR |
| AACCTTAACTGTAACGTTCA+AGG | 0.415365 | 5_4:-59955882 | Msa0860880:CDS |
| AGGAATCTTCGTGGACCTGC+TGG | 0.422036 | 5_4:-59955458 | Msa0860880:CDS |
| AATTAGAAGTACCTGAATTA+GGG | 0.433323 | 5_4:+59957694 | None:intergenic |
| TCCTTTGATCCCGGTTGGAC+AGG | 0.438015 | 5_4:+59955965 | None:intergenic |
| GGCTGGGGCTCCTACAGAAA+TGG | 0.439371 | 5_4:+59954527 | None:intergenic |
| CAGTGATTTGTGAAGTGTGT+TGG | 0.448060 | 5_4:-59957285 | Msa0860880:five_prime_UTR |
| AGTGACCTTCAAATGAAGAT+AGG | 0.453400 | 5_4:-59955536 | Msa0860880:CDS |
| GAATTTAAGATGGGGAAGGA+TGG | 0.459680 | 5_4:+59957786 | None:intergenic |
| ACAGAGATTTACCAGTGGTT+GGG | 0.462151 | 5_4:-59955371 | Msa0860880:CDS |
| ACTTAAAACTTCAAAACTAC+TGG | 0.474779 | 5_4:-59954159 | Msa0860880:three_prime_UTR |
| ATAACCATCACTTCAGTGGC+TGG | 0.477306 | 5_4:+59954510 | None:intergenic |
| AGTGTCAAGCGCTGCCTTGA+TGG | 0.477346 | 5_4:+59955989 | None:intergenic |
| TGATATCCACCTTCTCCAGC+AGG | 0.491305 | 5_4:+59955443 | None:intergenic |
| TCCTGTCCAACCGGGATCAA+AGG | 0.492864 | 5_4:-59955966 | Msa0860880:CDS |
| AACAGAGATTTACCAGTGGT+TGG | 0.493932 | 5_4:-59955372 | Msa0860880:CDS |
| GGTTACACTGTTTGGTGAAG+TGG | 0.502126 | 5_4:-59957264 | Msa0860880:five_prime_UTR |
| GACGGCAAGAAATATATAAC+CGG | 0.506359 | 5_4:+59955322 | None:intergenic |
| GGATGGATTAATGTGAGGTA+TGG | 0.506522 | 5_4:+59957803 | None:intergenic |
| ACTGTAACGTTCAAGGACTT+AGG | 0.507815 | 5_4:-59955875 | Msa0860880:CDS |
| GGCCGAGGTACCCTCGTCGG+TGG | 0.508785 | 5_4:-59954562 | Msa0860880:CDS |
| TAACCATCACTTCAGTGGCT+GGG | 0.511902 | 5_4:+59954511 | None:intergenic |
| GCATTAATGGAATATGGTTA+GGG | 0.518328 | 5_4:+59957856 | None:intergenic |
| AAGAAATATATAACCGGCAA+TGG | 0.521615 | 5_4:+59955328 | None:intergenic |
| GTTGCGGAAAACATTGGAAA+GGG | 0.523442 | 5_4:+59955628 | None:intergenic |
| GTTACACTGTTTGGTGAAGT+GGG | 0.523573 | 5_4:-59957263 | Msa0860880:five_prime_UTR |
| TACATGGCATATGTCTGCAC+AGG | 0.523747 | 5_4:+59955725 | None:intergenic |
| CAGTTGTTTGATGGAAAGGA+AGG | 0.528249 | 5_4:-59954587 | Msa0860880:CDS |
| GATATTGCCTCCATTTCTGT+AGG | 0.528268 | 5_4:-59954537 | Msa0860880:exon |
| TCATTTGAAGGTCACTTACA+GGG | 0.529579 | 5_4:+59955543 | None:intergenic |
| AGACATATGCCATGTACTAT+TGG | 0.530822 | 5_4:-59955718 | Msa0860880:CDS |
| CTTCGTGGACCTGCTGGAGA+AGG | 0.532866 | 5_4:-59955452 | Msa0860880:CDS |
| AACCATCACTTCAGTGGCTG+GGG | 0.535274 | 5_4:+59954512 | None:intergenic |
| AGCCCCAGCCACTGAAGTGA+TGG | 0.541810 | 5_4:-59954514 | Msa0860880:three_prime_UTR |
| AAAACACAGGCGCTTGAAGA+AGG | 0.542376 | 5_4:-59955267 | Msa0860880:intron |
| TACGAGTATTTCGGCTACAA+AGG | 0.543041 | 5_4:-59955764 | Msa0860880:CDS |
| CCTGCAGTTGTTTGATGGAA+AGG | 0.543183 | 5_4:-59954591 | Msa0860880:intron |
| GTCACTGTGGTTTCTAGGAG+TGG | 0.545999 | 5_4:-59957216 | Msa0860880:CDS |
| ATGGAAAGGAAGGGAGGCCG+AGG | 0.552898 | 5_4:-59954577 | Msa0860880:CDS |
| TAAGAAAGAAAGCAAAATGT+GGG | 0.552975 | 5_4:+59957737 | None:intergenic |
| TGGAAAGGGGCGAAGTTGCA+TGG | 0.556188 | 5_4:+59955642 | None:intergenic |
| AGCACAGTTGCGGAAAACAT+TGG | 0.558230 | 5_4:+59955622 | None:intergenic |
| TGAAACAATGCAGACACTAA+AGG | 0.558480 | 5_4:+59954219 | None:intergenic |
| ACGGGGAAGTAGTAGAAGAC+TGG | 0.561573 | 5_4:+59955791 | None:intergenic |
| CGTGGACCTGCTGGAGAAGG+TGG | 0.567577 | 5_4:-59955449 | Msa0860880:CDS |
| GGTTAGTACAAGATGAGGCC+AGG | 0.567866 | 5_4:+59957824 | None:intergenic |
| CAATGTTGAAGCCCAACCAC+TGG | 0.568163 | 5_4:+59955360 | None:intergenic |
| GATTATCGATTATCGTAGCA+TGG | 0.575054 | 5_4:-59954316 | Msa0860880:three_prime_UTR |
| CATTAATGCATACATTGACC+TGG | 0.578293 | 5_4:-59957842 | Msa0860880:five_prime_UTR |
| ATTATACTGAGGAATCTTCG+TGG | 0.579382 | 5_4:-59955467 | Msa0860880:CDS |
| CTAAGAAAGAAAGCAAAATG+TGG | 0.582031 | 5_4:+59957736 | None:intergenic |
| GGAAGAGAGATTGTTAAAGG+TGG | 0.583648 | 5_4:-59957195 | Msa0860880:CDS |
| GAAGTCACCACTCTGCTCAC+AGG | 0.589666 | 5_4:-59954487 | Msa0860880:three_prime_UTR |
| AGTCTCAATGACTATACAAG+TGG | 0.590878 | 5_4:-59955914 | Msa0860880:CDS |
| AGTTGCGGAAAACATTGGAA+AGG | 0.592239 | 5_4:+59955627 | None:intergenic |
| ACCCACCGACGAGGGTACCT+CGG | 0.593529 | 5_4:+59954560 | None:intergenic |
| TCCAGTAATAAGCACAGTTG+CGG | 0.593571 | 5_4:+59955612 | None:intergenic |
| TTGACACTTCCTGTCCAACC+GGG | 0.596671 | 5_4:-59955974 | Msa0860880:CDS |
| TAATGGAATATGGTTAGGGT+AGG | 0.602361 | 5_4:+59957860 | None:intergenic |
| TTTATTGCCATATTATACTG+AGG | 0.605844 | 5_4:-59955478 | Msa0860880:CDS |
| CAGCCAAGAAGCATCCATCA+AGG | 0.606217 | 5_4:-59956003 | Msa0860880:CDS |
| CATTTGAAGGTCACTTACAG+GGG | 0.612750 | 5_4:+59955544 | None:intergenic |
| TGGAGAATTTAAGATGGGGA+AGG | 0.618654 | 5_4:+59957782 | None:intergenic |
| ACTGGGCTCTTGCAAAACAC+AGG | 0.618820 | 5_4:-59955280 | Msa0860880:CDS |
| TCACTTACAGGGGTGTATAG+GGG | 0.622126 | 5_4:+59955554 | None:intergenic |
| AAGACTGGATAGAGAAGCAA+CGG | 0.623023 | 5_4:+59955806 | None:intergenic |
| GGTCATGATAAAAGCAGCGA+CGG | 0.625472 | 5_4:+59955304 | None:intergenic |
| AGTTGTTTGATGGAAAGGAA+GGG | 0.625743 | 5_4:-59954586 | Msa0860880:CDS |
| GGGAAGGATGGATTAATGTG+AGG | 0.629378 | 5_4:+59957798 | None:intergenic |
| CTTCATAACCATCACTTCAG+TGG | 0.630051 | 5_4:+59954506 | None:intergenic |
| TGGGGCTCCTACAGAAATGG+AGG | 0.630314 | 5_4:+59954530 | None:intergenic |
| ATGGAGACACCAATAGTACA+TGG | 0.636164 | 5_4:+59955709 | None:intergenic |
| ACTCAAAGAAGAAAAGCGTA+CGG | 0.636330 | 5_4:+59955837 | None:intergenic |
| GCCGAAATACTCGTAGACAA+CGG | 0.644557 | 5_4:+59955772 | None:intergenic |
| TTACAGGGGTGTATAGGGGA+TGG | 0.652446 | 5_4:+59955558 | None:intergenic |
| GGAGGCCGAGGTACCCTCGT+CGG | 0.660981 | 5_4:-59954565 | Msa0860880:CDS |
| AAAATGGAGAATTTAAGATG+GGG | 0.665263 | 5_4:+59957778 | None:intergenic |
| TGTTTGATGGAAAGGAAGGG+AGG | 0.665428 | 5_4:-59954583 | Msa0860880:CDS |
| AGCGTACGGTAAGAAACTTG+TGG | 0.676112 | 5_4:+59955851 | None:intergenic |
| TTGCGGAAAACATTGGAAAG+GGG | 0.678424 | 5_4:+59955629 | None:intergenic |
| AACAATGCAGACACTAAAGG+AGG | 0.678624 | 5_4:+59954222 | None:intergenic |
| TACTGTAGCAGATTTGCAGG+AGG | 0.680029 | 5_4:-59956965 | Msa0860880:CDS |
| GCAATATCACCCACCGACGA+GGG | 0.681535 | 5_4:+59954552 | None:intergenic |
| GGTATGGTTAGTACAAGATG+AGG | 0.691398 | 5_4:+59957819 | None:intergenic |
| ACATGGCATATGTCTGCACA+GGG | 0.710473 | 5_4:+59955726 | None:intergenic |
| TCAGAATCCTGTGAGCAGAG+TGG | 0.718980 | 5_4:+59954480 | None:intergenic |
| TATTGAAGAGAAAGCCACGT+GGG | 0.722862 | 5_4:+59955417 | None:intergenic |
| CGAAATACTCGTAGACAACG+GGG | 0.728914 | 5_4:+59955774 | None:intergenic |
| TGGCATATGTCTGCACAGGG+TGG | 0.739067 | 5_4:+59955729 | None:intergenic |
| TTTGAAGATGAAGGTCACTG+TGG | 0.749871 | 5_4:-59957229 | Msa0860880:exon |
| ATACAACAGAGATTTACCAG+TGG | 0.769592 | 5_4:-59955376 | Msa0860880:CDS |
| ATATTGAAGAGAAAGCCACG+TGG | 0.769930 | 5_4:+59955416 | None:intergenic |
| GGTGGATATCAAATCCCACG+TGG | 0.798768 | 5_4:-59955431 | Msa0860880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGGAAATAAATTATATTT+TGG | - | chr5_4:59954944-59954963 | Msa0860880:intron | 10.0% |
| !! | TTATAAAAATAAGCTAAAAA+TGG | + | chr5_4:59956957-59956976 | None:intergenic | 10.0% |
| !!! | CAATATGATTTCTATTTTTT+TGG | - | chr5_4:59954362-59954381 | Msa0860880:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTTGAGTTTTGT+AGG | - | chr5_4:59954658-59954677 | Msa0860880:intron | 15.0% |
| !! | TTTATATTGTGAAAAAATGT+GGG | + | chr5_4:59955525-59955544 | None:intergenic | 15.0% |
| !!! | TTTTATATTGTGAAAAAATG+TGG | + | chr5_4:59955526-59955545 | None:intergenic | 15.0% |
| !! | GTATAACAAAAAATAAAATG+AGG | + | chr5_4:59957015-59957034 | None:intergenic | 15.0% |
| !! | ATTAACAATTAAAATATGCA+AGG | + | chr5_4:59957366-59957385 | None:intergenic | 15.0% |
| !!! | TTGATATTTCTATCATATTT+TGG | - | chr5_4:59957747-59957766 | Msa0860880:five_prime_UTR | 15.0% |
| !!! | AAAAATGGAGAATTTAAGAT+GGG | + | chr5_4:59954225-59954244 | None:intergenic | 20.0% |
| !! | TGAAAATTTGGATAGAAAAA+TGG | + | chr5_4:59954240-59954259 | None:intergenic | 20.0% |
| !! | ATCATATTGAAAAACCTAAT+TGG | + | chr5_4:59954351-59954370 | None:intergenic | 20.0% |
| !! | CAAACTTTAATGAAGAAAAT+TGG | + | chr5_4:59954460-59954479 | None:intergenic | 20.0% |
| !!! | TTTTGTAAGAAAGTAATAGT+GGG | + | chr5_4:59954506-59954525 | None:intergenic | 20.0% |
| !! | AAAAAACCAACTATAAATCA+TGG | + | chr5_4:59954998-59955017 | None:intergenic | 20.0% |
| !! | TATAAAATGATCTTGAAGTT+TGG | - | chr5_4:59955539-59955558 | Msa0860880:CDS | 20.0% |
| !! | ATAAAATGATCTTGAAGTTT+GGG | - | chr5_4:59955540-59955559 | Msa0860880:CDS | 20.0% |
| !!! | ATCCAATTCCTATTATTTTA+TGG | - | chr5_4:59955848-59955867 | Msa0860880:CDS | 20.0% |
| !! | TAAGAAAGCCATAAAATAAT+AGG | + | chr5_4:59955859-59955878 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATTCAAAACAAC+AGG | + | chr5_4:59956064-59956083 | None:intergenic | 20.0% |
| !!! | AACTGTTTGATTTTAAATTG+AGG | - | chr5_4:59957136-59957155 | Msa0860880:intron | 20.0% |
| !! | ATGCAAAAGAATAACAATAT+TGG | + | chr5_4:59957342-59957361 | None:intergenic | 20.0% |
| ! | ATGTATGCATTAATGGAATA+TGG | + | chr5_4:59954152-59954171 | None:intergenic | 25.0% |
| !! | AAAATGGAGAATTTAAGATG+GGG | + | chr5_4:59954224-59954243 | None:intergenic | 25.0% |
| ! | GAAAAATGGAGAATTTAAGA+TGG | + | chr5_4:59954226-59954245 | None:intergenic | 25.0% |
| ! | AAAATGTGGGTTTGAAAATT+TGG | + | chr5_4:59954252-59954271 | None:intergenic | 25.0% |
| ! | TAAGAAAGAAAGCAAAATGT+GGG | + | chr5_4:59954265-59954284 | None:intergenic | 25.0% |
| !!! | AATTAGAAGTACCTGAATTA+GGG | + | chr5_4:59954308-59954327 | None:intergenic | 25.0% |
| !!! | ATTCTTCTACTTTTCCAATT+AGG | - | chr5_4:59954334-59954353 | Msa0860880:three_prime_UTR | 25.0% |
| !! | GTACCAAAATTTTCTGTTTA+CGG | - | chr5_4:59954384-59954403 | Msa0860880:three_prime_UTR | 25.0% |
| ! | TTTGTAAGAAAGTAATAGTG+GGG | + | chr5_4:59954505-59954524 | None:intergenic | 25.0% |
| !! | CTTTTGTAAGAAAGTAATAG+TGG | + | chr5_4:59954507-59954526 | None:intergenic | 25.0% |
| ! | CACTATTACTTTCTTACAAA+AGG | - | chr5_4:59954505-59954524 | Msa0860880:three_prime_UTR | 25.0% |
| ! | ATTACTTTCTTACAAAAGGT+TGG | - | chr5_4:59954509-59954528 | Msa0860880:three_prime_UTR | 25.0% |
| !!! | TGCTTGTTTTTGTCATAAAA+GGG | - | chr5_4:59954896-59954915 | Msa0860880:intron | 25.0% |
| !!! | GATTTCTTAGGTTGATTTAT+AGG | - | chr5_4:59954926-59954945 | Msa0860880:intron | 25.0% |
| ! | ATTGATCCATGATTTATAGT+TGG | - | chr5_4:59954989-59955008 | Msa0860880:intron | 25.0% |
| ! | TTAGAATGAAAGTTTCTTCT+CGG | - | chr5_4:59955572-59955591 | Msa0860880:CDS | 25.0% |
| !!! | TTAACCCACTTTTTGTATTT+TGG | - | chr5_4:59955605-59955624 | Msa0860880:CDS | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | - | chr5_4:59955661-59955680 | Msa0860880:CDS | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | + | chr5_4:59955672-59955691 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | + | chr5_4:59955673-59955692 | None:intergenic | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | - | chr5_4:59955661-59955680 | Msa0860880:CDS | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | + | chr5_4:59955672-59955691 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | + | chr5_4:59955673-59955692 | None:intergenic | 25.0% |
| ! | AGCCATAAAATAATAGGAAT+TGG | + | chr5_4:59955853-59955872 | None:intergenic | 25.0% |
| !!! | CATATTTTTTCTTTTGAGAG+AGG | + | chr5_4:59955895-59955914 | None:intergenic | 25.0% |
| !! | CTTTTCTTCTTTGAGTATTT+GGG | - | chr5_4:59956169-59956188 | Msa0860880:intron | 25.0% |
| !! | TTTTCTTCTTTGAGTATTTG+GGG | - | chr5_4:59956170-59956189 | Msa0860880:intron | 25.0% |
| ! | TTTATTGCCATATTATACTG+AGG | - | chr5_4:59956521-59956540 | Msa0860880:intron | 25.0% |
| ! | TTAGTGAACTACAAAAGAAA+AGG | + | chr5_4:59956770-59956789 | None:intergenic | 25.0% |
| ! | TAGTTCACTAATTCAGTTTA+TGG | - | chr5_4:59956779-59956798 | Msa0860880:intron | 25.0% |
| ! | AGCATATATAAAGACCTATT+TGG | - | chr5_4:59956844-59956863 | Msa0860880:intron | 25.0% |
| !! | GTTTTCGCTAAAAACTATTT+TGG | + | chr5_4:59956985-59957004 | None:intergenic | 25.0% |
| ! | TAAGTGTGATGTTTATTGTT+TGG | - | chr5_4:59957233-59957252 | Msa0860880:exon | 25.0% |
| ! | ACTTAAAACTTCAAAACTAC+TGG | - | chr5_4:59957840-59957859 | Msa0860880:five_prime_UTR | 25.0% |
| GCATTAATGGAATATGGTTA+GGG | + | chr5_4:59954146-59954165 | None:intergenic | 30.0% | |
| TGCATTAATGGAATATGGTT+AGG | + | chr5_4:59954147-59954166 | None:intergenic | 30.0% | |
| CTAAGAAAGAAAGCAAAATG+TGG | + | chr5_4:59954266-59954285 | None:intergenic | 30.0% | |
| !! | GAATTAGAAGTACCTGAATT+AGG | + | chr5_4:59954309-59954328 | None:intergenic | 30.0% |
| TGGAAAAGTAGAAGAATGAA+GGG | + | chr5_4:59954331-59954350 | None:intergenic | 30.0% | |
| TTGGAAAAGTAGAAGAATGA+AGG | + | chr5_4:59954332-59954351 | None:intergenic | 30.0% | |
| ! | CAACCGTAAACAGAAAATTT+TGG | + | chr5_4:59954390-59954409 | None:intergenic | 30.0% |
| TCGATGAAAACAATGAATGT+GGG | + | chr5_4:59954434-59954453 | None:intergenic | 30.0% | |
| TTCGATGAAAACAATGAATG+TGG | + | chr5_4:59954435-59954454 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGTTTTGAAGATGA+AGG | - | chr5_4:59954761-59954780 | Msa0860880:intron | 30.0% |
| !!! | GTGCTTGTTTTTGTCATAAA+AGG | - | chr5_4:59954895-59954914 | Msa0860880:intron | 30.0% |
| !!! | AAGGGTAGTTTTGATTTCTT+AGG | - | chr5_4:59954914-59954933 | Msa0860880:intron | 30.0% |
| !!! | GGTTTTTTTTTTTTTGCCAC+AGG | - | chr5_4:59955010-59955029 | Msa0860880:intron | 30.0% |
| GTTTCTATATAGTATCGTGT+TGG | - | chr5_4:59955186-59955205 | Msa0860880:intron | 30.0% | |
| TTGAAATTGTTTCCAACCTT+GGG | - | chr5_4:59955250-59955269 | Msa0860880:intron | 30.0% | |
| ! | TTACATTTGAGACACTCAAA+CGG | + | chr5_4:59955302-59955321 | None:intergenic | 30.0% |
| AAAAATGTGGGACTTATGAT+GGG | + | chr5_4:59955513-59955532 | None:intergenic | 30.0% | |
| AAAAAATGTGGGACTTATGA+TGG | + | chr5_4:59955514-59955533 | None:intergenic | 30.0% | |
| CAGACCAAAATACAAAAAGT+GGG | + | chr5_4:59955612-59955631 | None:intergenic | 30.0% | |
| ACAGACCAAAATACAAAAAG+TGG | + | chr5_4:59955613-59955632 | None:intergenic | 30.0% | |
| TTGGATGAAATGAATTGAAC+TGG | + | chr5_4:59955834-59955853 | None:intergenic | 30.0% | |
| CAAATCACGTTAATGAGTTA+TGG | + | chr5_4:59955960-59955979 | None:intergenic | 30.0% | |
| ! | GCTTTTCTTCTTTGAGTATT+TGG | - | chr5_4:59956168-59956187 | Msa0860880:intron | 30.0% |
| AAATGTTTCCAGAATTCGTT+TGG | + | chr5_4:59956320-59956339 | None:intergenic | 30.0% | |
| GAAGATTCCTCAGTATAATA+TGG | + | chr5_4:59956531-59956550 | None:intergenic | 30.0% | |
| AAGAAATATATAACCGGCAA+TGG | + | chr5_4:59956674-59956693 | None:intergenic | 30.0% | |
| GAACTACAAAAGAAAAGGTA+AGG | + | chr5_4:59956765-59956784 | None:intergenic | 30.0% | |
| AATAAGCTAAAAATGGCTGA+TGG | + | chr5_4:59956950-59956969 | None:intergenic | 30.0% | |
| CATAAGCGCTTATCATATAA+GGG | + | chr5_4:59957056-59957075 | None:intergenic | 30.0% | |
| !! | GAGGATTTTGAAAGTTTTGT+CGG | - | chr5_4:59957155-59957174 | Msa0860880:intron | 30.0% |
| TTAATCTTGCATCTTGTCTT+TGG | - | chr5_4:59957381-59957400 | Msa0860880:intron | 30.0% | |
| TAATGGAATATGGTTAGGGT+AGG | + | chr5_4:59954142-59954161 | None:intergenic | 35.0% | |
| CAGGTCAATGTATGCATTAA+TGG | + | chr5_4:59954159-59954178 | None:intergenic | 35.0% | |
| CATTAATGCATACATTGACC+TGG | - | chr5_4:59954157-59954176 | Msa0860880:three_prime_UTR | 35.0% | |
| TTACACTCTATCCCTAATTC+AGG | - | chr5_4:59954294-59954313 | Msa0860880:three_prime_UTR | 35.0% | |
| ATGTGGGTCATCGTTAAATT+AGG | + | chr5_4:59954418-59954437 | None:intergenic | 35.0% | |
| CTTGACATGTGGGTATTATA+TGG | - | chr5_4:59954534-59954553 | Msa0860880:exon | 35.0% | |
| !! | TTTAGTGCTGATGTGTATGA+TGG | - | chr5_4:59954609-59954628 | Msa0860880:intron | 35.0% |
| !! | TTAGTGCTGATGTGTATGAT+GGG | - | chr5_4:59954610-59954629 | Msa0860880:intron | 35.0% |
| !! | TTTGTAGGTGCTAGTTCTAT+TGG | - | chr5_4:59954673-59954692 | Msa0860880:intron | 35.0% |
| AGTGGAAGAGAGATTGTTAA+AGG | - | chr5_4:59954801-59954820 | Msa0860880:intron | 35.0% | |
| !! | ACCGAAGTTAAGTTGATCAA+AGG | - | chr5_4:59955139-59955158 | Msa0860880:intron | 35.0% |
| GCCTTTGATCAACTTAACTT+CGG | + | chr5_4:59955143-59955162 | None:intergenic | 35.0% | |
| ATCAAAGGCTTATGTCTTGA+TGG | - | chr5_4:59955154-59955173 | Msa0860880:intron | 35.0% | |
| GTTGGAAACAATTTCAACAG+AGG | + | chr5_4:59955247-59955266 | None:intergenic | 35.0% | |
| GTTGAAATTGTTTCCAACCT+TGG | - | chr5_4:59955249-59955268 | Msa0860880:intron | 35.0% | |
| GCAAATAAACCGATTGTGTT+TGG | - | chr5_4:59955272-59955291 | Msa0860880:CDS | 35.0% | |
| ! | AACGGATTTCCAAACACAAT+CGG | + | chr5_4:59955284-59955303 | None:intergenic | 35.0% |
| ACTGACATTTAAATGTGAGG+TGG | + | chr5_4:59955374-59955393 | None:intergenic | 35.0% | |
| GTGACTGACATTTAAATGTG+AGG | + | chr5_4:59955377-59955396 | None:intergenic | 35.0% | |
| ! | TTGCAGCTTTGTGAAAATCA+CGG | + | chr5_4:59955399-59955418 | None:intergenic | 35.0% |
| ! | GTGTTTGGAAATCCTTTTGA+GGG | + | chr5_4:59955490-59955509 | None:intergenic | 35.0% |
| AAAATGTGGGACTTATGATG+GGG | + | chr5_4:59955512-59955531 | None:intergenic | 35.0% | |
| CTGGATGAAATGAATTGAAC+TGG | + | chr5_4:59955721-59955740 | None:intergenic | 35.0% | |
| AGTCTCAATGACTATACAAG+TGG | - | chr5_4:59956085-59956104 | Msa0860880:intron | 35.0% | |
| AACCTTAACTGTAACGTTCA+AGG | - | chr5_4:59956117-59956136 | Msa0860880:intron | 35.0% | |
| ! | ACTCAAAGAAGAAAAGCGTA+CGG | + | chr5_4:59956165-59956184 | None:intergenic | 35.0% |
| AGACATATGCCATGTACTAT+TGG | - | chr5_4:59956281-59956300 | Msa0860880:intron | 35.0% | |
| TGTGCTTATTACTGGACATT+TGG | - | chr5_4:59956394-59956413 | Msa0860880:intron | 35.0% | |
| TCATTTGAAGGTCACTTACA+GGG | + | chr5_4:59956459-59956478 | None:intergenic | 35.0% | |
| TTCATTTGAAGGTCACTTAC+AGG | + | chr5_4:59956460-59956479 | None:intergenic | 35.0% | |
| AGTGACCTTCAAATGAAGAT+AGG | - | chr5_4:59956463-59956482 | Msa0860880:intron | 35.0% | |
| CAAAGCCTATCTTCATTTGA+AGG | + | chr5_4:59956471-59956490 | None:intergenic | 35.0% | |
| CTTCAAATGAAGATAGGCTT+TGG | - | chr5_4:59956469-59956488 | Msa0860880:intron | 35.0% | |
| !! | ATGAAGATAGGCTTTGGATT+TGG | - | chr5_4:59956475-59956494 | Msa0860880:intron | 35.0% |
| !! | TGAAGATAGGCTTTGGATTT+GGG | - | chr5_4:59956476-59956495 | Msa0860880:intron | 35.0% |
| ATTATACTGAGGAATCTTCG+TGG | - | chr5_4:59956532-59956551 | Msa0860880:intron | 35.0% | |
| ATACAACAGAGATTTACCAG+TGG | - | chr5_4:59956623-59956642 | Msa0860880:intron | 35.0% | |
| GACGGCAAGAAATATATAAC+CGG | + | chr5_4:59956680-59956699 | None:intergenic | 35.0% | |
| ! | TGCTTTTATCATGACCAACT+GGG | - | chr5_4:59956702-59956721 | Msa0860880:intron | 35.0% |
| CTCAAACAAGTCATCCAAAT+AGG | + | chr5_4:59956861-59956880 | None:intergenic | 35.0% | |
| CGCTTATCATATAAGGGTTT+AGG | + | chr5_4:59957050-59957069 | None:intergenic | 35.0% | |
| GCATAAGCGCTTATCATATA+AGG | + | chr5_4:59957057-59957076 | None:intergenic | 35.0% | |
| GAACACTTACGCATCATATT+TGG | + | chr5_4:59957102-59957121 | None:intergenic | 35.0% | |
| GCGTAAGTGTTCATATGATA+TGG | - | chr5_4:59957110-59957129 | Msa0860880:intron | 35.0% | |
| !! | TGTTTATTGTTTGGCTTGCT+AGG | - | chr5_4:59957242-59957261 | Msa0860880:exon | 35.0% |
| CTTGCTAGGTGAACTAAATT+TGG | - | chr5_4:59957256-59957275 | Msa0860880:five_prime_UTR | 35.0% | |
| ! | AATTTGGTTCATGTGTTGCT+TGG | - | chr5_4:59957272-59957291 | Msa0860880:five_prime_UTR | 35.0% |
| AGTTGTTTGATGGAAAGGAA+GGG | - | chr5_4:59957413-59957432 | Msa0860880:intron | 35.0% | |
| ! | CAATGTTTTCTCTATGCAGT+TGG | - | chr5_4:59957611-59957630 | Msa0860880:intron | 35.0% |
| ! | GATTATCGATTATCGTAGCA+TGG | - | chr5_4:59957683-59957702 | Msa0860880:intron | 35.0% |
| TGAAACAATGCAGACACTAA+AGG | + | chr5_4:59957783-59957802 | None:intergenic | 35.0% | |
| GGTATGGTTAGTACAAGATG+AGG | + | chr5_4:59954183-59954202 | None:intergenic | 40.0% | |
| !! | GGATGGATTAATGTGAGGTA+TGG | + | chr5_4:59954199-59954218 | None:intergenic | 40.0% |
| ! | GAATTTAAGATGGGGAAGGA+TGG | + | chr5_4:59954216-59954235 | None:intergenic | 40.0% |
| ! | TGGAGAATTTAAGATGGGGA+AGG | + | chr5_4:59954220-59954239 | None:intergenic | 40.0% |
| AAAGGTTGGAACTTGACATG+TGG | - | chr5_4:59954523-59954542 | Msa0860880:exon | 40.0% | |
| AAGGTTGGAACTTGACATGT+GGG | - | chr5_4:59954524-59954543 | Msa0860880:exon | 40.0% | |
| ! | CAGTGATTTGTGAAGTGTGT+TGG | - | chr5_4:59954714-59954733 | Msa0860880:intron | 40.0% |
| !! | AGTGTGTTGGTTACACTGTT+TGG | - | chr5_4:59954727-59954746 | Msa0860880:intron | 40.0% |
| ! | GTTACACTGTTTGGTGAAGT+GGG | - | chr5_4:59954736-59954755 | Msa0860880:intron | 40.0% |
| TTTGAAGATGAAGGTCACTG+TGG | - | chr5_4:59954770-59954789 | Msa0860880:intron | 40.0% | |
| GGAAGAGAGATTGTTAAAGG+TGG | - | chr5_4:59954804-59954823 | Msa0860880:intron | 40.0% | |
| ! | ACAATCGGTTTATTTGCCCA+AGG | + | chr5_4:59955269-59955288 | None:intergenic | 40.0% |
| ! | CAAACACATGCTTAGTGGAT+TGG | + | chr5_4:59955332-59955351 | None:intergenic | 40.0% |
| CAATCCACTAAGCATGTGTT+TGG | - | chr5_4:59955330-59955349 | Msa0860880:CDS | 40.0% | |
| TTTAAATGTGAGGTGGAGGT+AGG | + | chr5_4:59955367-59955386 | None:intergenic | 40.0% | |
| GACATTTAAATGTGAGGTGG+AGG | + | chr5_4:59955371-59955390 | None:intergenic | 40.0% | |
| ! | GGTGTTTGGAAATCCTTTTG+AGG | + | chr5_4:59955491-59955510 | None:intergenic | 40.0% |
| AGTCTACTTCATCTACAGAC+TGG | + | chr5_4:59955627-59955646 | None:intergenic | 40.0% | |
| GTATGTGTATGTCTGTCTCT+AGG | - | chr5_4:59955922-59955941 | Msa0860880:CDS | 40.0% | |
| GTCCTTGAACGTTACAGTTA+AGG | + | chr5_4:59956122-59956141 | None:intergenic | 40.0% | |
| ACTGTAACGTTCAAGGACTT+AGG | - | chr5_4:59956124-59956143 | Msa0860880:intron | 40.0% | |
| AAGACTGGATAGAGAAGCAA+CGG | + | chr5_4:59956196-59956215 | None:intergenic | 40.0% | |
| TACGAGTATTTCGGCTACAA+AGG | - | chr5_4:59956235-59956254 | Msa0860880:intron | 40.0% | |
| ATGGAGACACCAATAGTACA+TGG | + | chr5_4:59956293-59956312 | None:intergenic | 40.0% | |
| TTGCGGAAAACATTGGAAAG+GGG | + | chr5_4:59956373-59956392 | None:intergenic | 40.0% | |
| GTTGCGGAAAACATTGGAAA+GGG | + | chr5_4:59956374-59956393 | None:intergenic | 40.0% | |
| AGTTGCGGAAAACATTGGAA+AGG | + | chr5_4:59956375-59956394 | None:intergenic | 40.0% | |
| TCCAGTAATAAGCACAGTTG+CGG | + | chr5_4:59956390-59956409 | None:intergenic | 40.0% | |
| CATTTGAAGGTCACTTACAG+GGG | + | chr5_4:59956458-59956477 | None:intergenic | 40.0% | |
| TATTGAAGAGAAAGCCACGT+GGG | + | chr5_4:59956585-59956604 | None:intergenic | 40.0% | |
| ATATTGAAGAGAAAGCCACG+TGG | + | chr5_4:59956586-59956605 | None:intergenic | 40.0% | |
| AACAGAGATTTACCAGTGGT+TGG | - | chr5_4:59956627-59956646 | Msa0860880:intron | 40.0% | |
| ACAGAGATTTACCAGTGGTT+GGG | - | chr5_4:59956628-59956647 | Msa0860880:intron | 40.0% | |
| !! | CTGCTTTTATCATGACCAAC+TGG | - | chr5_4:59956701-59956720 | Msa0860880:intron | 40.0% |
| CAGTTGTTTGATGGAAAGGA+AGG | - | chr5_4:59957412-59957431 | Msa0860880:intron | 40.0% | |
| GATATTGCCTCCATTTCTGT+AGG | - | chr5_4:59957462-59957481 | Msa0860880:intron | 40.0% | |
| CTTCATAACCATCACTTCAG+TGG | + | chr5_4:59957496-59957515 | None:intergenic | 40.0% | |
| AACAATGCAGACACTAAAGG+AGG | + | chr5_4:59957780-59957799 | None:intergenic | 40.0% | |
| !! | GGGAAGGATGGATTAATGTG+AGG | + | chr5_4:59954204-59954223 | None:intergenic | 45.0% |
| ! | GGTTACACTGTTTGGTGAAG+TGG | - | chr5_4:59954735-59954754 | Msa0860880:intron | 45.0% |
| ! | TTGGTGAAGTGGGTGTGTTT+TGG | - | chr5_4:59954746-59954765 | Msa0860880:intron | 45.0% |
| TGAAGGTCACTGTGGTTTCT+AGG | - | chr5_4:59954778-59954797 | Msa0860880:intron | 45.0% | |
| AAATCTGCTACAGTAGCCTG+TGG | + | chr5_4:59955029-59955048 | None:intergenic | 45.0% | |
| TACTGTAGCAGATTTGCAGG+AGG | - | chr5_4:59955034-59955053 | Msa0860880:intron | 45.0% | |
| TCGGTTTATTTGCCCAAGGT+TGG | + | chr5_4:59955265-59955284 | None:intergenic | 45.0% | |
| GCTACCAAACACATGCTTAG+TGG | + | chr5_4:59955337-59955356 | None:intergenic | 45.0% | |
| !! | TAGCTTTGAGGTCCCTCAAA+AGG | - | chr5_4:59955475-59955494 | Msa0860880:CDS | 45.0% |
| ! | ACAGGCTTTTCCTTTGATCC+CGG | + | chr5_4:59956046-59956065 | None:intergenic | 45.0% |
| AGCGTACGGTAAGAAACTTG+TGG | + | chr5_4:59956151-59956170 | None:intergenic | 45.0% | |
| CGAAATACTCGTAGACAACG+GGG | + | chr5_4:59956228-59956247 | None:intergenic | 45.0% | |
| CCGAAATACTCGTAGACAAC+GGG | + | chr5_4:59956229-59956248 | None:intergenic | 45.0% | |
| CCCGTTGTCTACGAGTATTT+CGG | - | chr5_4:59956226-59956245 | Msa0860880:intron | 45.0% | |
| GCCGAAATACTCGTAGACAA+CGG | + | chr5_4:59956230-59956249 | None:intergenic | 45.0% | |
| ACATGGCATATGTCTGCACA+GGG | + | chr5_4:59956276-59956295 | None:intergenic | 45.0% | |
| TACATGGCATATGTCTGCAC+AGG | + | chr5_4:59956277-59956296 | None:intergenic | 45.0% | |
| CCAGAATTCGTTTGGCGTAA+TGG | + | chr5_4:59956312-59956331 | None:intergenic | 45.0% | |
| CCATTACGCCAAACGAATTC+TGG | - | chr5_4:59956309-59956328 | Msa0860880:intron | 45.0% | |
| AGCACAGTTGCGGAAAACAT+TGG | + | chr5_4:59956380-59956399 | None:intergenic | 45.0% | |
| TCCGCAACTGTGCTTATTAC+TGG | - | chr5_4:59956386-59956405 | Msa0860880:intron | 45.0% | |
| ! | TCACTTACAGGGGTGTATAG+GGG | + | chr5_4:59956448-59956467 | None:intergenic | 45.0% |
| ! | GTCACTTACAGGGGTGTATA+GGG | + | chr5_4:59956449-59956468 | None:intergenic | 45.0% |
| ATTGCAACGCAAACCATTGC+CGG | - | chr5_4:59956658-59956677 | Msa0860880:intron | 45.0% | |
| GGTCATGATAAAAGCAGCGA+CGG | + | chr5_4:59956698-59956717 | None:intergenic | 45.0% | |
| AAAACACAGGCGCTTGAAGA+AGG | - | chr5_4:59956732-59956751 | Msa0860880:intron | 45.0% | |
| GTGTACCTGCAGTTGTTTGA+TGG | - | chr5_4:59957403-59957422 | Msa0860880:intron | 45.0% | |
| CCTTTCCATCAAACAACTGC+AGG | + | chr5_4:59957411-59957430 | None:intergenic | 45.0% | |
| CCTGCAGTTGTTTGATGGAA+AGG | - | chr5_4:59957408-59957427 | Msa0860880:intron | 45.0% | |
| TGTTTGATGGAAAGGAAGGG+AGG | - | chr5_4:59957416-59957435 | Msa0860880:intron | 45.0% | |
| TAACCATCACTTCAGTGGCT+GGG | + | chr5_4:59957491-59957510 | None:intergenic | 45.0% | |
| ATAACCATCACTTCAGTGGC+TGG | + | chr5_4:59957492-59957511 | None:intergenic | 45.0% | |
| GGTTAGTACAAGATGAGGCC+AGG | + | chr5_4:59954178-59954197 | None:intergenic | 50.0% | |
| ! | GTCACTGTGGTTTCTAGGAG+TGG | - | chr5_4:59954783-59954802 | Msa0860880:intron | 50.0% |
| GGCTACTGTAGCAGATTTGC+AGG | - | chr5_4:59955031-59955050 | Msa0860880:intron | 50.0% | |
| ! | TGAGCTCAAGCGTAGCTTTG+AGG | - | chr5_4:59955463-59955482 | Msa0860880:CDS | 50.0% |
| ! | GGGACTTATGATGGGGTGTT+TGG | + | chr5_4:59955505-59955524 | None:intergenic | 50.0% |
| !! | CAGCCAAGAAGCATCCATCA+AGG | - | chr5_4:59955996-59956015 | Msa0860880:CDS | 50.0% |
| ! | CTGCCTTGATGGATGCTTCT+TGG | + | chr5_4:59956002-59956021 | None:intergenic | 50.0% |
| CTTGACACTTCCTGTCCAAC+CGG | - | chr5_4:59956024-59956043 | Msa0860880:intron | 50.0% | |
| TTGACACTTCCTGTCCAACC+GGG | - | chr5_4:59956025-59956044 | Msa0860880:intron | 50.0% | |
| ! | GCTTTTCCTTTGATCCCGGT+TGG | + | chr5_4:59956042-59956061 | None:intergenic | 50.0% |
| ACGGGGAAGTAGTAGAAGAC+TGG | + | chr5_4:59956211-59956230 | None:intergenic | 50.0% | |
| ! | TTACAGGGGTGTATAGGGGA+TGG | + | chr5_4:59956444-59956463 | None:intergenic | 50.0% |
| ! | GGTCACTTACAGGGGTGTAT+AGG | + | chr5_4:59956450-59956469 | None:intergenic | 50.0% |
| TGATATCCACCTTCTCCAGC+AGG | + | chr5_4:59956559-59956578 | None:intergenic | 50.0% | |
| GGTGGATATCAAATCCCACG+TGG | - | chr5_4:59956568-59956587 | Msa0860880:intron | 50.0% | |
| CAATGTTGAAGCCCAACCAC+TGG | + | chr5_4:59956642-59956661 | None:intergenic | 50.0% | |
| ! | GTGTTTTGCAAGAGCCCAGT+TGG | + | chr5_4:59956719-59956738 | None:intergenic | 50.0% |
| ACTGGGCTCTTGCAAAACAC+AGG | - | chr5_4:59956719-59956738 | Msa0860880:intron | 50.0% | |
| AACCATCACTTCAGTGGCTG+GGG | + | chr5_4:59957490-59957509 | None:intergenic | 50.0% | |
| TCAGAATCCTGTGAGCAGAG+TGG | + | chr5_4:59957522-59957541 | None:intergenic | 50.0% | |
| ! | AGTGTCAAGCGCTGCCTTGA+TGG | + | chr5_4:59956013-59956032 | None:intergenic | 55.0% |
| TCCTGTCCAACCGGGATCAA+AGG | - | chr5_4:59956033-59956052 | Msa0860880:intron | 55.0% | |
| TCCTTTGATCCCGGTTGGAC+AGG | + | chr5_4:59956037-59956056 | None:intergenic | 55.0% | |
| TGGCATATGTCTGCACAGGG+TGG | + | chr5_4:59956273-59956292 | None:intergenic | 55.0% | |
| TGGAAAGGGGCGAAGTTGCA+TGG | + | chr5_4:59956360-59956379 | None:intergenic | 55.0% | |
| AGGAATCTTCGTGGACCTGC+TGG | - | chr5_4:59956541-59956560 | Msa0860880:intron | 55.0% | |
| GCAATATCACCCACCGACGA+GGG | + | chr5_4:59957450-59957469 | None:intergenic | 55.0% | |
| TGGGGCTCCTACAGAAATGG+AGG | + | chr5_4:59957472-59957491 | None:intergenic | 55.0% | |
| GAAGTCACCACTCTGCTCAC+AGG | - | chr5_4:59957512-59957531 | Msa0860880:intron | 55.0% | |
| CTTCGTGGACCTGCTGGAGA+AGG | - | chr5_4:59956547-59956566 | Msa0860880:intron | 60.0% | |
| ATGGAAAGGAAGGGAGGCCG+AGG | - | chr5_4:59957422-59957441 | Msa0860880:intron | 60.0% | |
| GGCAATATCACCCACCGACG+AGG | + | chr5_4:59957451-59957470 | None:intergenic | 60.0% | |
| GGCTGGGGCTCCTACAGAAA+TGG | + | chr5_4:59957475-59957494 | None:intergenic | 60.0% | |
| AGCCCCAGCCACTGAAGTGA+TGG | - | chr5_4:59957485-59957504 | Msa0860880:intron | 60.0% | |
| CGTGGACCTGCTGGAGAAGG+TGG | - | chr5_4:59956550-59956569 | Msa0860880:intron | 65.0% | |
| !! | ACCCACCGACGAGGGTACCT+CGG | + | chr5_4:59957442-59957461 | None:intergenic | 65.0% |
| ! | GGAGGCCGAGGTACCCTCGT+CGG | - | chr5_4:59957434-59957453 | Msa0860880:intron | 70.0% |
| ! | GCCGAGGTACCCTCGTCGGT+GGG | - | chr5_4:59957438-59957457 | Msa0860880:intron | 70.0% |
| ! | GGCCGAGGTACCCTCGTCGG+TGG | - | chr5_4:59957437-59957456 | Msa0860880:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 59954139 | 59957882 | 59954139 | ID=Msa0860880;Name=Msa0860880 |
| chr5_4 | mRNA | 59954139 | 59957882 | 59954139 | ID=Msa0860880-mRNA-1;Parent=Msa0860880;Name=Msa0860880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=274|1|1|1|0.75|0.6|5|399|310 |
| chr5_4 | exon | 59954139 | 59954606 | 59954139 | ID=Msa0860880-mRNA-1:exon:18489;Parent=Msa0860880-mRNA-1 |
| chr5_4 | exon | 59955268 | 59956022 | 59955268 | ID=Msa0860880-mRNA-1:exon:18488;Parent=Msa0860880-mRNA-1 |
| chr5_4 | exon | 59956950 | 59956989 | 59956950 | ID=Msa0860880-mRNA-1:exon:18487;Parent=Msa0860880-mRNA-1 |
| chr5_4 | exon | 59957176 | 59957341 | 59957176 | ID=Msa0860880-mRNA-1:exon:18486;Parent=Msa0860880-mRNA-1 |
| chr5_4 | exon | 59957706 | 59957882 | 59957706 | ID=Msa0860880-mRNA-1:exon:18485;Parent=Msa0860880-mRNA-1 |
| chr5_4 | five_prime_UTR | 59957706 | 59957882 | 59957706 | ID=Msa0860880-mRNA-1:five_prime_utr;Parent=Msa0860880-mRNA-1 |
| chr5_4 | five_prime_UTR | 59957245 | 59957341 | 59957245 | ID=Msa0860880-mRNA-1:five_prime_utr;Parent=Msa0860880-mRNA-1 |
| chr5_4 | CDS | 59957176 | 59957244 | 59957176 | ID=Msa0860880-mRNA-1:cds;Parent=Msa0860880-mRNA-1 |
| chr5_4 | CDS | 59956950 | 59956989 | 59956950 | ID=Msa0860880-mRNA-1:cds;Parent=Msa0860880-mRNA-1 |
| chr5_4 | CDS | 59955268 | 59956022 | 59955268 | ID=Msa0860880-mRNA-1:cds;Parent=Msa0860880-mRNA-1 |
| chr5_4 | CDS | 59954538 | 59954606 | 59954538 | ID=Msa0860880-mRNA-1:cds;Parent=Msa0860880-mRNA-1 |
| chr5_4 | three_prime_UTR | 59954139 | 59954537 | 59954139 | ID=Msa0860880-mRNA-1:three_prime_utr;Parent=Msa0860880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
