Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460060 | XP_003617070.1 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460060 | sp|Q9M2U2|TECR_ARATH | 81.994 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460060 | B7FIH8 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025290 | Msa1460060 | 0.811712 | 6.102384e-51 | -8.615850e-47 |
| Msa0072600 | Msa1460060 | 0.812682 | 3.749703e-51 | -8.615850e-47 |
| Msa0638010 | Msa1460060 | 0.806793 | 6.922132e-50 | -8.615850e-47 |
| Msa0781330 | Msa1460060 | 0.920496 | 1.189700e-87 | -8.615850e-47 |
| Msa0460170 | Msa1460060 | 0.802005 | 6.889250e-49 | -8.615850e-47 |
| Msa0480090 | Msa1460060 | 0.823468 | 1.362748e-53 | -8.615850e-47 |
| Msa0258340 | Msa1460060 | 0.807527 | 4.838900e-50 | -8.615850e-47 |
| Msa0310730 | Msa1460060 | 0.800517 | 1.388680e-48 | -8.615850e-47 |
| Msa1167150 | Msa1460060 | 0.804472 | 2.125370e-49 | -8.615850e-47 |
| Msa0548650 | Msa1460060 | 0.808927 | 2.435387e-50 | -8.615850e-47 |
| Msa0860880 | Msa1460060 | 0.979507 | 4.038033e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460060 | MtrunA17_Chr5g0440411 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| Msa1460060 | MtrunA17_Chr6g0464411 | 30.962 | 239 | 131 | 9 | 61 | 288 | 43 | 258 | 2.75e-13 | 68.9 |
| Msa1460060 | MtrunA17_Chr6g0464451 | 28.655 | 171 | 113 | 4 | 140 | 309 | 147 | 309 | 1.53e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460060 | AT3G55360.1 | 81.994 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 0.0 | 540 |
| Msa1460060 | AT5G16010.1 | 30.000 | 130 | 89 | 2 | 139 | 267 | 102 | 230 | 1.06e-12 | 67.4 |
Find 125 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGTGGGTTTGAAAATT+TGG | 0.154935 | tig0040625:-9244 | None:intergenic |
| TTGATATTTCTATCATATTT+TGG | 0.167659 | tig0040625:+12743 | Msa1460060:three_prime_UTR |
| GAATTAGAAGTACCTGAATT+AGG | 0.237978 | tig0040625:-9301 | None:intergenic |
| TTCATTTGAAGGTCACTTAC+AGG | 0.239953 | tig0040625:-11453 | None:intergenic |
| CCATTACGCCAAACGAATTC+TGG | 0.240898 | tig0040625:+11305 | Msa1460060:CDS |
| CTGCCTTGATGGATGCTTCT+TGG | 0.246723 | tig0040625:-10995 | None:intergenic |
| ATGAAGATAGGCTTTGGATT+TGG | 0.247840 | tig0040625:+11471 | Msa1460060:CDS |
| TCCGCAACTGTGCTTATTAC+TGG | 0.262844 | tig0040625:+11382 | Msa1460060:CDS |
| TGAAGATAGGCTTTGGATTT+GGG | 0.293757 | tig0040625:+11472 | Msa1460060:CDS |
| AGTGGAAGAGAGATTGTTAA+AGG | 0.294260 | tig0040625:+9797 | Msa1460060:CDS |
| GTCACTTACAGGGGTGTATA+GGG | 0.307392 | tig0040625:-11442 | None:intergenic |
| TGAAGGTCACTGTGGTTTCT+AGG | 0.313807 | tig0040625:+9774 | Msa1460060:CDS |
| GGTCACTTACAGGGGTGTAT+AGG | 0.327530 | tig0040625:-11443 | None:intergenic |
| GTCCTTGAACGTTACAGTTA+AGG | 0.339195 | tig0040625:-11115 | None:intergenic |
| GGCTACTGTAGCAGATTTGC+AGG | 0.343092 | tig0040625:+10027 | Msa1460060:intron |
| TTTGTAGGTGCTAGTTCTAT+TGG | 0.346810 | tig0040625:+9669 | Msa1460060:intron |
| ATGTATGCATTAATGGAATA+TGG | 0.358460 | tig0040625:-9144 | None:intergenic |
| CTTCAAATGAAGATAGGCTT+TGG | 0.359794 | tig0040625:+11465 | Msa1460060:CDS |
| TGTGCTTATTACTGGACATT+TGG | 0.362923 | tig0040625:+11390 | Msa1460060:CDS |
| GAAGATTCCTCAGTATAATA+TGG | 0.369628 | tig0040625:-11524 | None:intergenic |
| AAATGTTTCCAGAATTCGTT+TGG | 0.370339 | tig0040625:-11313 | None:intergenic |
| TGCATTAATGGAATATGGTT+AGG | 0.379561 | tig0040625:-9139 | None:intergenic |
| ATTGCAACGCAAACCATTGC+CGG | 0.389032 | tig0040625:+11654 | Msa1460060:CDS |
| CAAAGCCTATCTTCATTTGA+AGG | 0.389390 | tig0040625:-11464 | None:intergenic |
| CCGAAATACTCGTAGACAAC+GGG | 0.390772 | tig0040625:-11222 | None:intergenic |
| TTACACTCTATCCCTAATTC+AGG | 0.391598 | tig0040625:+9289 | Msa1460060:five_prime_UTR |
| CCCGTTGTCTACGAGTATTT+CGG | 0.392516 | tig0040625:+11222 | Msa1460060:CDS |
| CCAGAATTCGTTTGGCGTAA+TGG | 0.397400 | tig0040625:-11305 | None:intergenic |
| CAGGTCAATGTATGCATTAA+TGG | 0.399354 | tig0040625:-9151 | None:intergenic |
| CTTGACACTTCCTGTCCAAC+CGG | 0.402666 | tig0040625:+11020 | Msa1460060:CDS |
| TTGGTGAAGTGGGTGTGTTT+TGG | 0.404400 | tig0040625:+9742 | Msa1460060:five_prime_UTR |
| GTGTACCTGCAGTTGTTTGA+TGG | 0.409094 | tig0040625:+12399 | Msa1460060:intron |
| AGTGTGTTGGTTACACTGTT+TGG | 0.411947 | tig0040625:+9723 | Msa1460060:five_prime_UTR |
| AACCTTAACTGTAACGTTCA+AGG | 0.415365 | tig0040625:+11113 | Msa1460060:CDS |
| AGGAATCTTCGTGGACCTGC+TGG | 0.422036 | tig0040625:+11537 | Msa1460060:CDS |
| AATTAGAAGTACCTGAATTA+GGG | 0.433323 | tig0040625:-9300 | None:intergenic |
| TCCTTTGATCCCGGTTGGAC+AGG | 0.438015 | tig0040625:-11030 | None:intergenic |
| GGCTGGGGCTCCTACAGAAA+TGG | 0.439371 | tig0040625:-12468 | None:intergenic |
| CAGTGATTTGTGAAGTGTGT+TGG | 0.448060 | tig0040625:+9710 | Msa1460060:five_prime_UTR |
| AGTGACCTTCAAATGAAGAT+AGG | 0.453400 | tig0040625:+11459 | Msa1460060:CDS |
| GAATTTAAGATGGGGAAGGA+TGG | 0.459680 | tig0040625:-9208 | None:intergenic |
| ACAGAGATTTACCAGTGGTT+GGG | 0.462151 | tig0040625:+11624 | Msa1460060:CDS |
| ACTTAAAACTTCAAAACTAC+TGG | 0.474779 | tig0040625:+12836 | Msa1460060:three_prime_UTR |
| ATAACCATCACTTCAGTGGC+TGG | 0.477306 | tig0040625:-12485 | None:intergenic |
| AGTGTCAAGCGCTGCCTTGA+TGG | 0.477346 | tig0040625:-11006 | None:intergenic |
| TGATATCCACCTTCTCCAGC+AGG | 0.491305 | tig0040625:-11552 | None:intergenic |
| TCCTGTCCAACCGGGATCAA+AGG | 0.492864 | tig0040625:+11029 | Msa1460060:CDS |
| AACAGAGATTTACCAGTGGT+TGG | 0.493932 | tig0040625:+11623 | Msa1460060:CDS |
| GGTTACACTGTTTGGTGAAG+TGG | 0.502126 | tig0040625:+9731 | Msa1460060:five_prime_UTR |
| GACGGCAAGAAATATATAAC+CGG | 0.506359 | tig0040625:-11673 | None:intergenic |
| GGATGGATTAATGTGAGGTA+TGG | 0.506522 | tig0040625:-9191 | None:intergenic |
| ACTGTAACGTTCAAGGACTT+AGG | 0.507815 | tig0040625:+11120 | Msa1460060:CDS |
| GGCCGAGGTACCCTCGTCGG+TGG | 0.508785 | tig0040625:+12433 | Msa1460060:CDS |
| TAACCATCACTTCAGTGGCT+GGG | 0.511902 | tig0040625:-12484 | None:intergenic |
| GCATTAATGGAATATGGTTA+GGG | 0.518328 | tig0040625:-9138 | None:intergenic |
| AAGAAATATATAACCGGCAA+TGG | 0.521615 | tig0040625:-11667 | None:intergenic |
| GTTGCGGAAAACATTGGAAA+GGG | 0.523442 | tig0040625:-11367 | None:intergenic |
| GTTACACTGTTTGGTGAAGT+GGG | 0.523573 | tig0040625:+9732 | Msa1460060:five_prime_UTR |
| TACATGGCATATGTCTGCAC+AGG | 0.523747 | tig0040625:-11270 | None:intergenic |
| CAGTTGTTTGATGGAAAGGA+AGG | 0.528249 | tig0040625:+12408 | Msa1460060:intron |
| GATATTGCCTCCATTTCTGT+AGG | 0.528268 | tig0040625:+12458 | Msa1460060:CDS |
| TCATTTGAAGGTCACTTACA+GGG | 0.529579 | tig0040625:-11452 | None:intergenic |
| AGACATATGCCATGTACTAT+TGG | 0.530822 | tig0040625:+11277 | Msa1460060:CDS |
| CTTCGTGGACCTGCTGGAGA+AGG | 0.532866 | tig0040625:+11543 | Msa1460060:CDS |
| AACCATCACTTCAGTGGCTG+GGG | 0.535274 | tig0040625:-12483 | None:intergenic |
| AGCCCCAGCCACTGAAGTGA+TGG | 0.541810 | tig0040625:+12481 | Msa1460060:three_prime_UTR |
| AAAACACAGGCGCTTGAAGA+AGG | 0.542376 | tig0040625:+11728 | Msa1460060:CDS |
| TACGAGTATTTCGGCTACAA+AGG | 0.543041 | tig0040625:+11231 | Msa1460060:CDS |
| CCTGCAGTTGTTTGATGGAA+AGG | 0.543183 | tig0040625:+12404 | Msa1460060:intron |
| GTCACTGTGGTTTCTAGGAG+TGG | 0.545999 | tig0040625:+9779 | Msa1460060:CDS |
| ATGGAAAGGAAGGGAGGCCG+AGG | 0.552898 | tig0040625:+12418 | Msa1460060:CDS |
| TAAGAAAGAAAGCAAAATGT+GGG | 0.552975 | tig0040625:-9257 | None:intergenic |
| TGGAAAGGGGCGAAGTTGCA+TGG | 0.556188 | tig0040625:-11353 | None:intergenic |
| AGCACAGTTGCGGAAAACAT+TGG | 0.558230 | tig0040625:-11373 | None:intergenic |
| TGAAACAATGCAGACACTAA+AGG | 0.558480 | tig0040625:-12776 | None:intergenic |
| ACGGGGAAGTAGTAGAAGAC+TGG | 0.561573 | tig0040625:-11204 | None:intergenic |
| CGTGGACCTGCTGGAGAAGG+TGG | 0.567577 | tig0040625:+11546 | Msa1460060:CDS |
| GGTTAGTACAAGATGAGGCC+AGG | 0.567866 | tig0040625:-9170 | None:intergenic |
| CAATGTTGAAGCCCAACCAC+TGG | 0.568163 | tig0040625:-11635 | None:intergenic |
| GATTATCGATTATCGTAGCA+TGG | 0.575054 | tig0040625:+12679 | Msa1460060:three_prime_UTR |
| CATTAATGCATACATTGACC+TGG | 0.578293 | tig0040625:+9152 | Msa1460060:five_prime_UTR |
| ATTATACTGAGGAATCTTCG+TGG | 0.579382 | tig0040625:+11528 | Msa1460060:CDS |
| CTAAGAAAGAAAGCAAAATG+TGG | 0.582031 | tig0040625:-9258 | None:intergenic |
| GGAAGAGAGATTGTTAAAGG+TGG | 0.583648 | tig0040625:+9800 | Msa1460060:CDS |
| GAAGTCACCACTCTGCTCAC+AGG | 0.589666 | tig0040625:+12508 | Msa1460060:three_prime_UTR |
| AGTCTCAATGACTATACAAG+TGG | 0.590878 | tig0040625:+11081 | Msa1460060:CDS |
| AGTTGCGGAAAACATTGGAA+AGG | 0.592239 | tig0040625:-11368 | None:intergenic |
| ACCCACCGACGAGGGTACCT+CGG | 0.593529 | tig0040625:-12435 | None:intergenic |
| TCCAGTAATAAGCACAGTTG+CGG | 0.593571 | tig0040625:-11383 | None:intergenic |
| TTGACACTTCCTGTCCAACC+GGG | 0.596671 | tig0040625:+11021 | Msa1460060:CDS |
| TAATGGAATATGGTTAGGGT+AGG | 0.602361 | tig0040625:-9134 | None:intergenic |
| TTTATTGCCATATTATACTG+AGG | 0.605844 | tig0040625:+11517 | Msa1460060:CDS |
| CAGCCAAGAAGCATCCATCA+AGG | 0.606217 | tig0040625:+10992 | Msa1460060:intron |
| CATTTGAAGGTCACTTACAG+GGG | 0.612750 | tig0040625:-11451 | None:intergenic |
| TGGAGAATTTAAGATGGGGA+AGG | 0.618654 | tig0040625:-9212 | None:intergenic |
| ACTGGGCTCTTGCAAAACAC+AGG | 0.618820 | tig0040625:+11715 | Msa1460060:CDS |
| TCACTTACAGGGGTGTATAG+GGG | 0.622126 | tig0040625:-11441 | None:intergenic |
| AAGACTGGATAGAGAAGCAA+CGG | 0.623023 | tig0040625:-11189 | None:intergenic |
| GGTCATGATAAAAGCAGCGA+CGG | 0.625472 | tig0040625:-11691 | None:intergenic |
| AGTTGTTTGATGGAAAGGAA+GGG | 0.625743 | tig0040625:+12409 | Msa1460060:intron |
| GGGAAGGATGGATTAATGTG+AGG | 0.629378 | tig0040625:-9196 | None:intergenic |
| CTTCATAACCATCACTTCAG+TGG | 0.630051 | tig0040625:-12489 | None:intergenic |
| TGGGGCTCCTACAGAAATGG+AGG | 0.630314 | tig0040625:-12465 | None:intergenic |
| ATGGAGACACCAATAGTACA+TGG | 0.636164 | tig0040625:-11286 | None:intergenic |
| ACTCAAAGAAGAAAAGCGTA+CGG | 0.636330 | tig0040625:-11158 | None:intergenic |
| GCCGAAATACTCGTAGACAA+CGG | 0.644557 | tig0040625:-11223 | None:intergenic |
| TTACAGGGGTGTATAGGGGA+TGG | 0.652446 | tig0040625:-11437 | None:intergenic |
| GGAGGCCGAGGTACCCTCGT+CGG | 0.660981 | tig0040625:+12430 | Msa1460060:CDS |
| AAAATGGAGAATTTAAGATG+GGG | 0.665263 | tig0040625:-9216 | None:intergenic |
| TGTTTGATGGAAAGGAAGGG+AGG | 0.665428 | tig0040625:+12412 | Msa1460060:CDS |
| AGCGTACGGTAAGAAACTTG+TGG | 0.676112 | tig0040625:-11144 | None:intergenic |
| TTGCGGAAAACATTGGAAAG+GGG | 0.678424 | tig0040625:-11366 | None:intergenic |
| AACAATGCAGACACTAAAGG+AGG | 0.678624 | tig0040625:-12773 | None:intergenic |
| TACTGTAGCAGATTTGCAGG+AGG | 0.680029 | tig0040625:+10030 | Msa1460060:CDS |
| GCAATATCACCCACCGACGA+GGG | 0.681535 | tig0040625:-12443 | None:intergenic |
| GGTATGGTTAGTACAAGATG+AGG | 0.691398 | tig0040625:-9175 | None:intergenic |
| ACATGGCATATGTCTGCACA+GGG | 0.710473 | tig0040625:-11269 | None:intergenic |
| TCAGAATCCTGTGAGCAGAG+TGG | 0.718980 | tig0040625:-12515 | None:intergenic |
| TATTGAAGAGAAAGCCACGT+GGG | 0.722862 | tig0040625:-11578 | None:intergenic |
| CGAAATACTCGTAGACAACG+GGG | 0.728914 | tig0040625:-11221 | None:intergenic |
| TGGCATATGTCTGCACAGGG+TGG | 0.739067 | tig0040625:-11266 | None:intergenic |
| TTTGAAGATGAAGGTCACTG+TGG | 0.749871 | tig0040625:+9766 | Msa1460060:exon |
| ATACAACAGAGATTTACCAG+TGG | 0.769592 | tig0040625:+11619 | Msa1460060:CDS |
| ATATTGAAGAGAAAGCCACG+TGG | 0.769930 | tig0040625:-11579 | None:intergenic |
| GGTGGATATCAAATCCCACG+TGG | 0.798768 | tig0040625:+11564 | Msa1460060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGGAAATAAATTATATTT+TGG | + | tig0040625:9940-9959 | Msa1460060:intron | 10.0% |
| !! | TTATAAAAATAAGCTAAAAA+TGG | - | tig0040625:11953-11972 | None:intergenic | 10.0% |
| !!! | CAATATGATTTCTATTTTTT+TGG | + | tig0040625:9357-9376 | Msa1460060:intron | 15.0% |
| !!! | TTTTTTTTTTTGAGTTTTGT+AGG | + | tig0040625:9654-9673 | Msa1460060:intron | 15.0% |
| !! | TTTATATTGTGAAAAAATGT+GGG | - | tig0040625:10521-10540 | None:intergenic | 15.0% |
| !!! | TTTTATATTGTGAAAAAATG+TGG | - | tig0040625:10522-10541 | None:intergenic | 15.0% |
| !! | GTATAACAAAAAATAAAATG+AGG | - | tig0040625:12011-12030 | None:intergenic | 15.0% |
| !! | ATTAACAATTAAAATATGCA+AGG | - | tig0040625:12362-12381 | None:intergenic | 15.0% |
| !!! | TTGATATTTCTATCATATTT+TGG | + | tig0040625:12743-12762 | Msa1460060:three_prime_UTR | 15.0% |
| !!! | AAAAATGGAGAATTTAAGAT+GGG | - | tig0040625:9220-9239 | None:intergenic | 20.0% |
| !! | TGAAAATTTGGATAGAAAAA+TGG | - | tig0040625:9235-9254 | None:intergenic | 20.0% |
| !! | ATCATATTGAAAAACCTAAT+TGG | - | tig0040625:9346-9365 | None:intergenic | 20.0% |
| !! | CAAACTTTAATGAAGAAAAT+TGG | - | tig0040625:9455-9474 | None:intergenic | 20.0% |
| !!! | TTTTGTAAGAAAGTAATAGT+GGG | - | tig0040625:9501-9520 | None:intergenic | 20.0% |
| !! | AAAAAACCAACTATAAATCA+TGG | - | tig0040625:9994-10013 | None:intergenic | 20.0% |
| !! | TATAAAATGATCTTGAAGTT+TGG | + | tig0040625:10535-10554 | Msa1460060:intron | 20.0% |
| !! | ATAAAATGATCTTGAAGTTT+GGG | + | tig0040625:10536-10555 | Msa1460060:intron | 20.0% |
| !!! | ATCCAATTCCTATTATTTTA+TGG | + | tig0040625:10844-10863 | Msa1460060:intron | 20.0% |
| !! | TAAGAAAGCCATAAAATAAT+AGG | - | tig0040625:10855-10874 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATTCAAAACAAC+AGG | - | tig0040625:11060-11079 | None:intergenic | 20.0% |
| !!! | AACTGTTTGATTTTAAATTG+AGG | + | tig0040625:12132-12151 | Msa1460060:intron | 20.0% |
| !! | ATGCAAAAGAATAACAATAT+TGG | - | tig0040625:12338-12357 | None:intergenic | 20.0% |
| ! | ATGTATGCATTAATGGAATA+TGG | - | tig0040625:9147-9166 | None:intergenic | 25.0% |
| !! | AAAATGGAGAATTTAAGATG+GGG | - | tig0040625:9219-9238 | None:intergenic | 25.0% |
| ! | GAAAAATGGAGAATTTAAGA+TGG | - | tig0040625:9221-9240 | None:intergenic | 25.0% |
| ! | AAAATGTGGGTTTGAAAATT+TGG | - | tig0040625:9247-9266 | None:intergenic | 25.0% |
| ! | TAAGAAAGAAAGCAAAATGT+GGG | - | tig0040625:9260-9279 | None:intergenic | 25.0% |
| !!! | AATTAGAAGTACCTGAATTA+GGG | - | tig0040625:9303-9322 | None:intergenic | 25.0% |
| !!! | ATTCTTCTACTTTTCCAATT+AGG | + | tig0040625:9329-9348 | Msa1460060:intron | 25.0% |
| !! | GTACCAAAATTTTCTGTTTA+CGG | + | tig0040625:9379-9398 | Msa1460060:intron | 25.0% |
| ! | TTTGTAAGAAAGTAATAGTG+GGG | - | tig0040625:9500-9519 | None:intergenic | 25.0% |
| !! | CTTTTGTAAGAAAGTAATAG+TGG | - | tig0040625:9502-9521 | None:intergenic | 25.0% |
| ! | CACTATTACTTTCTTACAAA+AGG | + | tig0040625:9500-9519 | Msa1460060:intron | 25.0% |
| ! | ATTACTTTCTTACAAAAGGT+TGG | + | tig0040625:9504-9523 | Msa1460060:intron | 25.0% |
| !!! | TGCTTGTTTTTGTCATAAAA+GGG | + | tig0040625:9892-9911 | Msa1460060:intron | 25.0% |
| !!! | GATTTCTTAGGTTGATTTAT+AGG | + | tig0040625:9922-9941 | Msa1460060:intron | 25.0% |
| ! | ATTGATCCATGATTTATAGT+TGG | + | tig0040625:9985-10004 | Msa1460060:intron | 25.0% |
| ! | TTAGAATGAAAGTTTCTTCT+CGG | + | tig0040625:10568-10587 | Msa1460060:intron | 25.0% |
| !!! | TTAACCCACTTTTTGTATTT+TGG | + | tig0040625:10601-10620 | Msa1460060:intron | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | + | tig0040625:10657-10676 | Msa1460060:intron | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | - | tig0040625:10668-10687 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | - | tig0040625:10669-10688 | None:intergenic | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | + | tig0040625:10657-10676 | Msa1460060:intron | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | - | tig0040625:10668-10687 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | - | tig0040625:10669-10688 | None:intergenic | 25.0% |
| ! | AGCCATAAAATAATAGGAAT+TGG | - | tig0040625:10849-10868 | None:intergenic | 25.0% |
| !!! | CATATTTTTTCTTTTGAGAG+AGG | - | tig0040625:10891-10910 | None:intergenic | 25.0% |
| !! | CTTTTCTTCTTTGAGTATTT+GGG | + | tig0040625:11165-11184 | Msa1460060:CDS | 25.0% |
| !! | TTTTCTTCTTTGAGTATTTG+GGG | + | tig0040625:11166-11185 | Msa1460060:CDS | 25.0% |
| ! | TTTATTGCCATATTATACTG+AGG | + | tig0040625:11517-11536 | Msa1460060:CDS | 25.0% |
| ! | TTAGTGAACTACAAAAGAAA+AGG | - | tig0040625:11766-11785 | None:intergenic | 25.0% |
| ! | TAGTTCACTAATTCAGTTTA+TGG | + | tig0040625:11775-11794 | Msa1460060:intron | 25.0% |
| ! | AGCATATATAAAGACCTATT+TGG | + | tig0040625:11840-11859 | Msa1460060:intron | 25.0% |
| !! | GTTTTCGCTAAAAACTATTT+TGG | - | tig0040625:11981-12000 | None:intergenic | 25.0% |
| ! | TAAGTGTGATGTTTATTGTT+TGG | + | tig0040625:12229-12248 | Msa1460060:intron | 25.0% |
| ! | ACTTAAAACTTCAAAACTAC+TGG | + | tig0040625:12836-12855 | Msa1460060:three_prime_UTR | 25.0% |
| GCATTAATGGAATATGGTTA+GGG | - | tig0040625:9141-9160 | None:intergenic | 30.0% | |
| TGCATTAATGGAATATGGTT+AGG | - | tig0040625:9142-9161 | None:intergenic | 30.0% | |
| CTAAGAAAGAAAGCAAAATG+TGG | - | tig0040625:9261-9280 | None:intergenic | 30.0% | |
| !! | GAATTAGAAGTACCTGAATT+AGG | - | tig0040625:9304-9323 | None:intergenic | 30.0% |
| TGGAAAAGTAGAAGAATGAA+GGG | - | tig0040625:9326-9345 | None:intergenic | 30.0% | |
| TTGGAAAAGTAGAAGAATGA+AGG | - | tig0040625:9327-9346 | None:intergenic | 30.0% | |
| ! | CAACCGTAAACAGAAAATTT+TGG | - | tig0040625:9385-9404 | None:intergenic | 30.0% |
| TCGATGAAAACAATGAATGT+GGG | - | tig0040625:9429-9448 | None:intergenic | 30.0% | |
| TTCGATGAAAACAATGAATG+TGG | - | tig0040625:9430-9449 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGTTTTGAAGATGA+AGG | + | tig0040625:9757-9776 | Msa1460060:exon | 30.0% |
| !!! | GTGCTTGTTTTTGTCATAAA+AGG | + | tig0040625:9891-9910 | Msa1460060:intron | 30.0% |
| !!! | AAGGGTAGTTTTGATTTCTT+AGG | + | tig0040625:9910-9929 | Msa1460060:intron | 30.0% |
| !!! | GGTTTTTTTTTTTTTGCCAC+AGG | + | tig0040625:10006-10025 | Msa1460060:intron | 30.0% |
| GTTTCTATATAGTATCGTGT+TGG | + | tig0040625:10182-10201 | Msa1460060:intron | 30.0% | |
| TTGAAATTGTTTCCAACCTT+GGG | + | tig0040625:10246-10265 | Msa1460060:intron | 30.0% | |
| ! | TTACATTTGAGACACTCAAA+CGG | - | tig0040625:10298-10317 | None:intergenic | 30.0% |
| AAAAATGTGGGACTTATGAT+GGG | - | tig0040625:10509-10528 | None:intergenic | 30.0% | |
| AAAAAATGTGGGACTTATGA+TGG | - | tig0040625:10510-10529 | None:intergenic | 30.0% | |
| CAGACCAAAATACAAAAAGT+GGG | - | tig0040625:10608-10627 | None:intergenic | 30.0% | |
| ACAGACCAAAATACAAAAAG+TGG | - | tig0040625:10609-10628 | None:intergenic | 30.0% | |
| TTGGATGAAATGAATTGAAC+TGG | - | tig0040625:10830-10849 | None:intergenic | 30.0% | |
| CAAATCACGTTAATGAGTTA+TGG | - | tig0040625:10956-10975 | None:intergenic | 30.0% | |
| ! | GCTTTTCTTCTTTGAGTATT+TGG | + | tig0040625:11164-11183 | Msa1460060:CDS | 30.0% |
| AAATGTTTCCAGAATTCGTT+TGG | - | tig0040625:11316-11335 | None:intergenic | 30.0% | |
| GAAGATTCCTCAGTATAATA+TGG | - | tig0040625:11527-11546 | None:intergenic | 30.0% | |
| AAGAAATATATAACCGGCAA+TGG | - | tig0040625:11670-11689 | None:intergenic | 30.0% | |
| GAACTACAAAAGAAAAGGTA+AGG | - | tig0040625:11761-11780 | None:intergenic | 30.0% | |
| AATAAGCTAAAAATGGCTGA+TGG | - | tig0040625:11946-11965 | None:intergenic | 30.0% | |
| CATAAGCGCTTATCATATAA+GGG | - | tig0040625:12052-12071 | None:intergenic | 30.0% | |
| !! | GAGGATTTTGAAAGTTTTGT+CGG | + | tig0040625:12151-12170 | Msa1460060:intron | 30.0% |
| TTAATCTTGCATCTTGTCTT+TGG | + | tig0040625:12377-12396 | Msa1460060:intron | 30.0% | |
| TAATGGAATATGGTTAGGGT+AGG | - | tig0040625:9137-9156 | None:intergenic | 35.0% | |
| CAGGTCAATGTATGCATTAA+TGG | - | tig0040625:9154-9173 | None:intergenic | 35.0% | |
| CATTAATGCATACATTGACC+TGG | + | tig0040625:9152-9171 | Msa1460060:five_prime_UTR | 35.0% | |
| TTACACTCTATCCCTAATTC+AGG | + | tig0040625:9289-9308 | Msa1460060:five_prime_UTR | 35.0% | |
| ATGTGGGTCATCGTTAAATT+AGG | - | tig0040625:9413-9432 | None:intergenic | 35.0% | |
| CTTGACATGTGGGTATTATA+TGG | + | tig0040625:9529-9548 | Msa1460060:intron | 35.0% | |
| !! | TTTAGTGCTGATGTGTATGA+TGG | + | tig0040625:9604-9623 | Msa1460060:intron | 35.0% |
| !! | TTAGTGCTGATGTGTATGAT+GGG | + | tig0040625:9605-9624 | Msa1460060:intron | 35.0% |
| !! | TTTGTAGGTGCTAGTTCTAT+TGG | + | tig0040625:9669-9688 | Msa1460060:intron | 35.0% |
| AGTGGAAGAGAGATTGTTAA+AGG | + | tig0040625:9797-9816 | Msa1460060:CDS | 35.0% | |
| !! | ACCGAAGTTAAGTTGATCAA+AGG | + | tig0040625:10135-10154 | Msa1460060:intron | 35.0% |
| GCCTTTGATCAACTTAACTT+CGG | - | tig0040625:10139-10158 | None:intergenic | 35.0% | |
| ATCAAAGGCTTATGTCTTGA+TGG | + | tig0040625:10150-10169 | Msa1460060:intron | 35.0% | |
| GTTGGAAACAATTTCAACAG+AGG | - | tig0040625:10243-10262 | None:intergenic | 35.0% | |
| GTTGAAATTGTTTCCAACCT+TGG | + | tig0040625:10245-10264 | Msa1460060:intron | 35.0% | |
| GCAAATAAACCGATTGTGTT+TGG | + | tig0040625:10268-10287 | Msa1460060:intron | 35.0% | |
| ! | AACGGATTTCCAAACACAAT+CGG | - | tig0040625:10280-10299 | None:intergenic | 35.0% |
| ACTGACATTTAAATGTGAGG+TGG | - | tig0040625:10370-10389 | None:intergenic | 35.0% | |
| GTGACTGACATTTAAATGTG+AGG | - | tig0040625:10373-10392 | None:intergenic | 35.0% | |
| ! | TTGCAGCTTTGTGAAAATCA+CGG | - | tig0040625:10395-10414 | None:intergenic | 35.0% |
| ! | GTGTTTGGAAATCCTTTTGA+GGG | - | tig0040625:10486-10505 | None:intergenic | 35.0% |
| AAAATGTGGGACTTATGATG+GGG | - | tig0040625:10508-10527 | None:intergenic | 35.0% | |
| CTGGATGAAATGAATTGAAC+TGG | - | tig0040625:10717-10736 | None:intergenic | 35.0% | |
| AGTCTCAATGACTATACAAG+TGG | + | tig0040625:11081-11100 | Msa1460060:CDS | 35.0% | |
| AACCTTAACTGTAACGTTCA+AGG | + | tig0040625:11113-11132 | Msa1460060:CDS | 35.0% | |
| ! | ACTCAAAGAAGAAAAGCGTA+CGG | - | tig0040625:11161-11180 | None:intergenic | 35.0% |
| AGACATATGCCATGTACTAT+TGG | + | tig0040625:11277-11296 | Msa1460060:CDS | 35.0% | |
| TGTGCTTATTACTGGACATT+TGG | + | tig0040625:11390-11409 | Msa1460060:CDS | 35.0% | |
| TCATTTGAAGGTCACTTACA+GGG | - | tig0040625:11455-11474 | None:intergenic | 35.0% | |
| TTCATTTGAAGGTCACTTAC+AGG | - | tig0040625:11456-11475 | None:intergenic | 35.0% | |
| AGTGACCTTCAAATGAAGAT+AGG | + | tig0040625:11459-11478 | Msa1460060:CDS | 35.0% | |
| CAAAGCCTATCTTCATTTGA+AGG | - | tig0040625:11467-11486 | None:intergenic | 35.0% | |
| CTTCAAATGAAGATAGGCTT+TGG | + | tig0040625:11465-11484 | Msa1460060:CDS | 35.0% | |
| !! | ATGAAGATAGGCTTTGGATT+TGG | + | tig0040625:11471-11490 | Msa1460060:CDS | 35.0% |
| !! | TGAAGATAGGCTTTGGATTT+GGG | + | tig0040625:11472-11491 | Msa1460060:CDS | 35.0% |
| ATTATACTGAGGAATCTTCG+TGG | + | tig0040625:11528-11547 | Msa1460060:CDS | 35.0% | |
| ATACAACAGAGATTTACCAG+TGG | + | tig0040625:11619-11638 | Msa1460060:CDS | 35.0% | |
| GACGGCAAGAAATATATAAC+CGG | - | tig0040625:11676-11695 | None:intergenic | 35.0% | |
| ! | TGCTTTTATCATGACCAACT+GGG | + | tig0040625:11698-11717 | Msa1460060:CDS | 35.0% |
| CTCAAACAAGTCATCCAAAT+AGG | - | tig0040625:11857-11876 | None:intergenic | 35.0% | |
| CGCTTATCATATAAGGGTTT+AGG | - | tig0040625:12046-12065 | None:intergenic | 35.0% | |
| GCATAAGCGCTTATCATATA+AGG | - | tig0040625:12053-12072 | None:intergenic | 35.0% | |
| GAACACTTACGCATCATATT+TGG | - | tig0040625:12098-12117 | None:intergenic | 35.0% | |
| GCGTAAGTGTTCATATGATA+TGG | + | tig0040625:12106-12125 | Msa1460060:intron | 35.0% | |
| !! | TGTTTATTGTTTGGCTTGCT+AGG | + | tig0040625:12238-12257 | Msa1460060:intron | 35.0% |
| CTTGCTAGGTGAACTAAATT+TGG | + | tig0040625:12252-12271 | Msa1460060:intron | 35.0% | |
| ! | AATTTGGTTCATGTGTTGCT+TGG | + | tig0040625:12268-12287 | Msa1460060:intron | 35.0% |
| AGTTGTTTGATGGAAAGGAA+GGG | + | tig0040625:12409-12428 | Msa1460060:intron | 35.0% | |
| ! | CAATGTTTTCTCTATGCAGT+TGG | + | tig0040625:12607-12626 | Msa1460060:three_prime_UTR | 35.0% |
| ! | GATTATCGATTATCGTAGCA+TGG | + | tig0040625:12679-12698 | Msa1460060:three_prime_UTR | 35.0% |
| TGAAACAATGCAGACACTAA+AGG | - | tig0040625:12779-12798 | None:intergenic | 35.0% | |
| GGTATGGTTAGTACAAGATG+AGG | - | tig0040625:9178-9197 | None:intergenic | 40.0% | |
| !! | GGATGGATTAATGTGAGGTA+TGG | - | tig0040625:9194-9213 | None:intergenic | 40.0% |
| ! | GAATTTAAGATGGGGAAGGA+TGG | - | tig0040625:9211-9230 | None:intergenic | 40.0% |
| ! | TGGAGAATTTAAGATGGGGA+AGG | - | tig0040625:9215-9234 | None:intergenic | 40.0% |
| AAAGGTTGGAACTTGACATG+TGG | + | tig0040625:9518-9537 | Msa1460060:intron | 40.0% | |
| AAGGTTGGAACTTGACATGT+GGG | + | tig0040625:9519-9538 | Msa1460060:intron | 40.0% | |
| ! | CAGTGATTTGTGAAGTGTGT+TGG | + | tig0040625:9710-9729 | Msa1460060:five_prime_UTR | 40.0% |
| !! | AGTGTGTTGGTTACACTGTT+TGG | + | tig0040625:9723-9742 | Msa1460060:five_prime_UTR | 40.0% |
| ! | GTTACACTGTTTGGTGAAGT+GGG | + | tig0040625:9732-9751 | Msa1460060:five_prime_UTR | 40.0% |
| TTTGAAGATGAAGGTCACTG+TGG | + | tig0040625:9766-9785 | Msa1460060:exon | 40.0% | |
| GGAAGAGAGATTGTTAAAGG+TGG | + | tig0040625:9800-9819 | Msa1460060:CDS | 40.0% | |
| ! | ACAATCGGTTTATTTGCCCA+AGG | - | tig0040625:10265-10284 | None:intergenic | 40.0% |
| ! | CAAACACATGCTTAGTGGAT+TGG | - | tig0040625:10328-10347 | None:intergenic | 40.0% |
| CAATCCACTAAGCATGTGTT+TGG | + | tig0040625:10326-10345 | Msa1460060:intron | 40.0% | |
| TTTAAATGTGAGGTGGAGGT+AGG | - | tig0040625:10363-10382 | None:intergenic | 40.0% | |
| GACATTTAAATGTGAGGTGG+AGG | - | tig0040625:10367-10386 | None:intergenic | 40.0% | |
| ! | GGTGTTTGGAAATCCTTTTG+AGG | - | tig0040625:10487-10506 | None:intergenic | 40.0% |
| AGTCTACTTCATCTACAGAC+TGG | - | tig0040625:10623-10642 | None:intergenic | 40.0% | |
| GTATGTGTATGTCTGTCTCT+AGG | + | tig0040625:10918-10937 | Msa1460060:intron | 40.0% | |
| GTCCTTGAACGTTACAGTTA+AGG | - | tig0040625:11118-11137 | None:intergenic | 40.0% | |
| ACTGTAACGTTCAAGGACTT+AGG | + | tig0040625:11120-11139 | Msa1460060:CDS | 40.0% | |
| AAGACTGGATAGAGAAGCAA+CGG | - | tig0040625:11192-11211 | None:intergenic | 40.0% | |
| TACGAGTATTTCGGCTACAA+AGG | + | tig0040625:11231-11250 | Msa1460060:CDS | 40.0% | |
| ATGGAGACACCAATAGTACA+TGG | - | tig0040625:11289-11308 | None:intergenic | 40.0% | |
| TTGCGGAAAACATTGGAAAG+GGG | - | tig0040625:11369-11388 | None:intergenic | 40.0% | |
| GTTGCGGAAAACATTGGAAA+GGG | - | tig0040625:11370-11389 | None:intergenic | 40.0% | |
| AGTTGCGGAAAACATTGGAA+AGG | - | tig0040625:11371-11390 | None:intergenic | 40.0% | |
| TCCAGTAATAAGCACAGTTG+CGG | - | tig0040625:11386-11405 | None:intergenic | 40.0% | |
| CATTTGAAGGTCACTTACAG+GGG | - | tig0040625:11454-11473 | None:intergenic | 40.0% | |
| TATTGAAGAGAAAGCCACGT+GGG | - | tig0040625:11581-11600 | None:intergenic | 40.0% | |
| ATATTGAAGAGAAAGCCACG+TGG | - | tig0040625:11582-11601 | None:intergenic | 40.0% | |
| AACAGAGATTTACCAGTGGT+TGG | + | tig0040625:11623-11642 | Msa1460060:CDS | 40.0% | |
| ACAGAGATTTACCAGTGGTT+GGG | + | tig0040625:11624-11643 | Msa1460060:CDS | 40.0% | |
| !! | CTGCTTTTATCATGACCAAC+TGG | + | tig0040625:11697-11716 | Msa1460060:CDS | 40.0% |
| CAGTTGTTTGATGGAAAGGA+AGG | + | tig0040625:12408-12427 | Msa1460060:intron | 40.0% | |
| GATATTGCCTCCATTTCTGT+AGG | + | tig0040625:12458-12477 | Msa1460060:CDS | 40.0% | |
| CTTCATAACCATCACTTCAG+TGG | - | tig0040625:12492-12511 | None:intergenic | 40.0% | |
| AACAATGCAGACACTAAAGG+AGG | - | tig0040625:12776-12795 | None:intergenic | 40.0% | |
| !! | GGGAAGGATGGATTAATGTG+AGG | - | tig0040625:9199-9218 | None:intergenic | 45.0% |
| ! | GGTTACACTGTTTGGTGAAG+TGG | + | tig0040625:9731-9750 | Msa1460060:five_prime_UTR | 45.0% |
| ! | TTGGTGAAGTGGGTGTGTTT+TGG | + | tig0040625:9742-9761 | Msa1460060:five_prime_UTR | 45.0% |
| TGAAGGTCACTGTGGTTTCT+AGG | + | tig0040625:9774-9793 | Msa1460060:CDS | 45.0% | |
| AAATCTGCTACAGTAGCCTG+TGG | - | tig0040625:10025-10044 | None:intergenic | 45.0% | |
| TACTGTAGCAGATTTGCAGG+AGG | + | tig0040625:10030-10049 | Msa1460060:CDS | 45.0% | |
| TCGGTTTATTTGCCCAAGGT+TGG | - | tig0040625:10261-10280 | None:intergenic | 45.0% | |
| GCTACCAAACACATGCTTAG+TGG | - | tig0040625:10333-10352 | None:intergenic | 45.0% | |
| !! | TAGCTTTGAGGTCCCTCAAA+AGG | + | tig0040625:10471-10490 | Msa1460060:intron | 45.0% |
| ! | ACAGGCTTTTCCTTTGATCC+CGG | - | tig0040625:11042-11061 | None:intergenic | 45.0% |
| AGCGTACGGTAAGAAACTTG+TGG | - | tig0040625:11147-11166 | None:intergenic | 45.0% | |
| CGAAATACTCGTAGACAACG+GGG | - | tig0040625:11224-11243 | None:intergenic | 45.0% | |
| CCGAAATACTCGTAGACAAC+GGG | - | tig0040625:11225-11244 | None:intergenic | 45.0% | |
| CCCGTTGTCTACGAGTATTT+CGG | + | tig0040625:11222-11241 | Msa1460060:CDS | 45.0% | |
| GCCGAAATACTCGTAGACAA+CGG | - | tig0040625:11226-11245 | None:intergenic | 45.0% | |
| ACATGGCATATGTCTGCACA+GGG | - | tig0040625:11272-11291 | None:intergenic | 45.0% | |
| TACATGGCATATGTCTGCAC+AGG | - | tig0040625:11273-11292 | None:intergenic | 45.0% | |
| CCAGAATTCGTTTGGCGTAA+TGG | - | tig0040625:11308-11327 | None:intergenic | 45.0% | |
| CCATTACGCCAAACGAATTC+TGG | + | tig0040625:11305-11324 | Msa1460060:CDS | 45.0% | |
| AGCACAGTTGCGGAAAACAT+TGG | - | tig0040625:11376-11395 | None:intergenic | 45.0% | |
| TCCGCAACTGTGCTTATTAC+TGG | + | tig0040625:11382-11401 | Msa1460060:CDS | 45.0% | |
| ! | TCACTTACAGGGGTGTATAG+GGG | - | tig0040625:11444-11463 | None:intergenic | 45.0% |
| ! | GTCACTTACAGGGGTGTATA+GGG | - | tig0040625:11445-11464 | None:intergenic | 45.0% |
| ATTGCAACGCAAACCATTGC+CGG | + | tig0040625:11654-11673 | Msa1460060:CDS | 45.0% | |
| GGTCATGATAAAAGCAGCGA+CGG | - | tig0040625:11694-11713 | None:intergenic | 45.0% | |
| AAAACACAGGCGCTTGAAGA+AGG | + | tig0040625:11728-11747 | Msa1460060:CDS | 45.0% | |
| GTGTACCTGCAGTTGTTTGA+TGG | + | tig0040625:12399-12418 | Msa1460060:intron | 45.0% | |
| CCTTTCCATCAAACAACTGC+AGG | - | tig0040625:12407-12426 | None:intergenic | 45.0% | |
| CCTGCAGTTGTTTGATGGAA+AGG | + | tig0040625:12404-12423 | Msa1460060:intron | 45.0% | |
| TGTTTGATGGAAAGGAAGGG+AGG | + | tig0040625:12412-12431 | Msa1460060:CDS | 45.0% | |
| TAACCATCACTTCAGTGGCT+GGG | - | tig0040625:12487-12506 | None:intergenic | 45.0% | |
| ATAACCATCACTTCAGTGGC+TGG | - | tig0040625:12488-12507 | None:intergenic | 45.0% | |
| GGTTAGTACAAGATGAGGCC+AGG | - | tig0040625:9173-9192 | None:intergenic | 50.0% | |
| ! | GTCACTGTGGTTTCTAGGAG+TGG | + | tig0040625:9779-9798 | Msa1460060:CDS | 50.0% |
| GGCTACTGTAGCAGATTTGC+AGG | + | tig0040625:10027-10046 | Msa1460060:intron | 50.0% | |
| ! | TGAGCTCAAGCGTAGCTTTG+AGG | + | tig0040625:10459-10478 | Msa1460060:intron | 50.0% |
| ! | GGGACTTATGATGGGGTGTT+TGG | - | tig0040625:10501-10520 | None:intergenic | 50.0% |
| !! | CAGCCAAGAAGCATCCATCA+AGG | + | tig0040625:10992-11011 | Msa1460060:intron | 50.0% |
| ! | CTGCCTTGATGGATGCTTCT+TGG | - | tig0040625:10998-11017 | None:intergenic | 50.0% |
| CTTGACACTTCCTGTCCAAC+CGG | + | tig0040625:11020-11039 | Msa1460060:CDS | 50.0% | |
| TTGACACTTCCTGTCCAACC+GGG | + | tig0040625:11021-11040 | Msa1460060:CDS | 50.0% | |
| ! | GCTTTTCCTTTGATCCCGGT+TGG | - | tig0040625:11038-11057 | None:intergenic | 50.0% |
| ACGGGGAAGTAGTAGAAGAC+TGG | - | tig0040625:11207-11226 | None:intergenic | 50.0% | |
| ! | TTACAGGGGTGTATAGGGGA+TGG | - | tig0040625:11440-11459 | None:intergenic | 50.0% |
| ! | GGTCACTTACAGGGGTGTAT+AGG | - | tig0040625:11446-11465 | None:intergenic | 50.0% |
| TGATATCCACCTTCTCCAGC+AGG | - | tig0040625:11555-11574 | None:intergenic | 50.0% | |
| GGTGGATATCAAATCCCACG+TGG | + | tig0040625:11564-11583 | Msa1460060:CDS | 50.0% | |
| CAATGTTGAAGCCCAACCAC+TGG | - | tig0040625:11638-11657 | None:intergenic | 50.0% | |
| ! | GTGTTTTGCAAGAGCCCAGT+TGG | - | tig0040625:11715-11734 | None:intergenic | 50.0% |
| ACTGGGCTCTTGCAAAACAC+AGG | + | tig0040625:11715-11734 | Msa1460060:CDS | 50.0% | |
| AACCATCACTTCAGTGGCTG+GGG | - | tig0040625:12486-12505 | None:intergenic | 50.0% | |
| TCAGAATCCTGTGAGCAGAG+TGG | - | tig0040625:12518-12537 | None:intergenic | 50.0% | |
| ! | AGTGTCAAGCGCTGCCTTGA+TGG | - | tig0040625:11009-11028 | None:intergenic | 55.0% |
| TCCTGTCCAACCGGGATCAA+AGG | + | tig0040625:11029-11048 | Msa1460060:CDS | 55.0% | |
| TCCTTTGATCCCGGTTGGAC+AGG | - | tig0040625:11033-11052 | None:intergenic | 55.0% | |
| TGGCATATGTCTGCACAGGG+TGG | - | tig0040625:11269-11288 | None:intergenic | 55.0% | |
| TGGAAAGGGGCGAAGTTGCA+TGG | - | tig0040625:11356-11375 | None:intergenic | 55.0% | |
| AGGAATCTTCGTGGACCTGC+TGG | + | tig0040625:11537-11556 | Msa1460060:CDS | 55.0% | |
| GCAATATCACCCACCGACGA+GGG | - | tig0040625:12446-12465 | None:intergenic | 55.0% | |
| TGGGGCTCCTACAGAAATGG+AGG | - | tig0040625:12468-12487 | None:intergenic | 55.0% | |
| GAAGTCACCACTCTGCTCAC+AGG | + | tig0040625:12508-12527 | Msa1460060:three_prime_UTR | 55.0% | |
| CTTCGTGGACCTGCTGGAGA+AGG | + | tig0040625:11543-11562 | Msa1460060:CDS | 60.0% | |
| ATGGAAAGGAAGGGAGGCCG+AGG | + | tig0040625:12418-12437 | Msa1460060:CDS | 60.0% | |
| GGCAATATCACCCACCGACG+AGG | - | tig0040625:12447-12466 | None:intergenic | 60.0% | |
| GGCTGGGGCTCCTACAGAAA+TGG | - | tig0040625:12471-12490 | None:intergenic | 60.0% | |
| AGCCCCAGCCACTGAAGTGA+TGG | + | tig0040625:12481-12500 | Msa1460060:three_prime_UTR | 60.0% | |
| CGTGGACCTGCTGGAGAAGG+TGG | + | tig0040625:11546-11565 | Msa1460060:CDS | 65.0% | |
| !! | ACCCACCGACGAGGGTACCT+CGG | - | tig0040625:12438-12457 | None:intergenic | 65.0% |
| ! | GGAGGCCGAGGTACCCTCGT+CGG | + | tig0040625:12430-12449 | Msa1460060:CDS | 70.0% |
| ! | GCCGAGGTACCCTCGTCGGT+GGG | + | tig0040625:12434-12453 | Msa1460060:CDS | 70.0% |
| ! | GGCCGAGGTACCCTCGTCGG+TGG | + | tig0040625:12433-12452 | Msa1460060:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040625 | gene | 9134 | 12878 | 9134 | ID=Msa1460060;Name=Msa1460060 |
| tig0040625 | mRNA | 9134 | 12878 | 9134 | ID=Msa1460060-mRNA-1;Parent=Msa1460060;Name=Msa1460060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=274|1|1|1|0.75|0.6|5|399|310 |
| tig0040625 | exon | 9134 | 9310 | 9134 | ID=Msa1460060-mRNA-1:exon:22554;Parent=Msa1460060-mRNA-1 |
| tig0040625 | exon | 9676 | 9841 | 9676 | ID=Msa1460060-mRNA-1:exon:22555;Parent=Msa1460060-mRNA-1 |
| tig0040625 | exon | 10028 | 10067 | 10028 | ID=Msa1460060-mRNA-1:exon:22556;Parent=Msa1460060-mRNA-1 |
| tig0040625 | exon | 10995 | 11749 | 10995 | ID=Msa1460060-mRNA-1:exon:22557;Parent=Msa1460060-mRNA-1 |
| tig0040625 | exon | 12411 | 12878 | 12411 | ID=Msa1460060-mRNA-1:exon:22558;Parent=Msa1460060-mRNA-1 |
| tig0040625 | five_prime_UTR | 9134 | 9310 | 9134 | ID=Msa1460060-mRNA-1:five_prime_utr;Parent=Msa1460060-mRNA-1 |
| tig0040625 | five_prime_UTR | 9676 | 9772 | 9676 | ID=Msa1460060-mRNA-1:five_prime_utr;Parent=Msa1460060-mRNA-1 |
| tig0040625 | CDS | 9773 | 9841 | 9773 | ID=Msa1460060-mRNA-1:cds;Parent=Msa1460060-mRNA-1 |
| tig0040625 | CDS | 10028 | 10067 | 10028 | ID=Msa1460060-mRNA-1:cds;Parent=Msa1460060-mRNA-1 |
| tig0040625 | CDS | 10995 | 11749 | 10995 | ID=Msa1460060-mRNA-1:cds;Parent=Msa1460060-mRNA-1 |
| tig0040625 | CDS | 12411 | 12479 | 12411 | ID=Msa1460060-mRNA-1:cds;Parent=Msa1460060-mRNA-1 |
| tig0040625 | three_prime_UTR | 12480 | 12878 | 12480 | ID=Msa1460060-mRNA-1:three_prime_utr;Parent=Msa1460060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
