Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866230 | XP_024638079.1 | 76.048 | 167 | 24 | 1 | 1 | 151 | 1 | 167 | 1.17e-78 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866230 | sp|Q9SLN5|MAP1A_ARATH | 50.251 | 199 | 71 | 3 | 13 | 183 | 43 | 241 | 4.94e-56 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866230 | A0A396I104 | 71.951 | 164 | 30 | 1 | 4 | 151 | 33 | 196 | 3.20e-70 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621490 | Msa0866230 | 0.806828 | 6.804287e-50 | -8.615850e-47 |
| Msa0661190 | Msa0866230 | -0.826053 | 3.350510e-54 | -8.615850e-47 |
| Msa0795920 | Msa0866230 | 0.808270 | 3.364215e-50 | -8.615850e-47 |
| Msa0245310 | Msa0866230 | 0.809833 | 1.556286e-50 | -8.615850e-47 |
| Msa0267310 | Msa0866230 | 0.817448 | 3.279733e-52 | -8.615850e-47 |
| Msa0294560 | Msa0866230 | -0.801728 | 7.851414e-49 | -8.615850e-47 |
| Msa0358170 | Msa0866230 | 0.805180 | 1.511580e-49 | -8.615850e-47 |
| Msa0500360 | Msa0866230 | 0.801964 | 7.024321e-49 | -8.615850e-47 |
| Msa0515010 | Msa0866230 | 0.801983 | 6.961464e-49 | -8.615850e-47 |
| Msa0580420 | Msa0866230 | 0.820915 | 5.330274e-53 | -8.615850e-47 |
| Msa0866230 | Msa0870150 | 0.812488 | 4.134846e-51 | -8.615850e-47 |
| Msa0866230 | Msa0877880 | 0.808594 | 2.868396e-50 | -8.615850e-47 |
| Msa0866230 | Msa1051200 | 0.805230 | 1.475494e-49 | -8.615850e-47 |
| Msa0866230 | Msa1143930 | -0.806521 | 7.900891e-50 | -8.615850e-47 |
| Msa0866230 | Msa1262920 | 0.804659 | 1.942489e-49 | -8.615850e-47 |
| Msa0866230 | Msa1332040 | -0.815017 | 1.146471e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866230 | MtrunA17_Chr4g0011731 | 71.951 | 164 | 30 | 1 | 4 | 151 | 33 | 196 | 6.16e-74 | 228 |
| Msa0866230 | MtrunA17_Chr5g0401341 | 83.784 | 37 | 6 | 0 | 153 | 189 | 59 | 95 | 6.95e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866230 | AT2G45240.2 | 50.251 | 199 | 71 | 3 | 13 | 183 | 43 | 241 | 3.70e-58 | 186 |
| Msa0866230 | AT2G45240.1 | 50.251 | 199 | 71 | 3 | 13 | 183 | 43 | 241 | 5.02e-57 | 185 |
Find 65 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTAGTGATTAGCATTT+TGG | 0.168251 | 5_4:-67686756 | Msa0866230:five_prime_UTR |
| CCTGGAGGACCTGTTGCTTT+TGG | 0.213344 | 5_4:-67684325 | Msa0866230:CDS |
| CACTCTAAACCTGTTGCTTT+TGG | 0.236313 | 5_4:-67684269 | Msa0866230:CDS |
| TTTCTCTCATTCTTTCAATC+TGG | 0.288753 | 5_4:+67685842 | None:intergenic |
| CAAAGCTTCCTTACTTTGAT+TGG | 0.291250 | 5_4:-67686390 | Msa0866230:CDS |
| CTCATTCTTTCAATCTGGTC+TGG | 0.298030 | 5_4:+67685847 | None:intergenic |
| GACAATCCGTTTACCAGATA+TGG | 0.303126 | 5_4:+67686105 | None:intergenic |
| GAGGAAGAATACCCAACTTC+TGG | 0.304720 | 5_4:+67684540 | None:intergenic |
| CTCATATTGTTATAGCTGAT+TGG | 0.332350 | 5_4:-67686078 | Msa0866230:CDS |
| CGTTTACCAGATATGGGATA+TGG | 0.350796 | 5_4:+67686112 | None:intergenic |
| GCTCAACCTCACCTTCTATA+TGG | 0.364624 | 5_4:+67686701 | None:intergenic |
| CTGTGGCCATATCCCATATC+TGG | 0.376829 | 5_4:-67686118 | Msa0866230:CDS |
| TCTGGAAGCACTCCTTGTAT+TGG | 0.379409 | 5_4:+67684558 | None:intergenic |
| ATTCACATCCACGACATTCC+TGG | 0.390748 | 5_4:-67684343 | Msa0866230:CDS |
| CTTCCTTACTTTGATTGGAC+TGG | 0.410698 | 5_4:-67686385 | Msa0866230:CDS |
| CAATCAAAGTAAGGAAGCTT+TGG | 0.411005 | 5_4:+67686391 | None:intergenic |
| AAATTGATTCATAGATTGTA+AGG | 0.421908 | 5_4:-67685252 | Msa0866230:intron |
| GCACATATTCCAAAAGCAAC+AGG | 0.422062 | 5_4:+67684260 | None:intergenic |
| TCATATTGTTATAGCTGATT+GGG | 0.422950 | 5_4:-67686077 | Msa0866230:CDS |
| TATAAGAGCGCTACCTTTCG+AGG | 0.428852 | 5_4:+67684521 | None:intergenic |
| TGATGGCTTCGACTAACTCT+TGG | 0.438791 | 5_4:+67684586 | None:intergenic |
| ATTTAATATTTATAGCAGAT+TGG | 0.445477 | 5_4:-67686783 | Msa0866230:five_prime_UTR |
| TCCGAAGGGCACCATATAGA+AGG | 0.447343 | 5_4:-67686712 | Msa0866230:intron |
| CAAGGAGTGCTTCCAGAAGT+TGG | 0.454920 | 5_4:-67684552 | Msa0866230:CDS |
| GCACATATTCCAAAAGCAAC+AGG | 0.455877 | 5_4:+67684316 | None:intergenic |
| CATATCCCATATCTGGTAAA+CGG | 0.459117 | 5_4:-67686111 | Msa0866230:CDS |
| TTCCTTACTTTGATTGGACT+GGG | 0.461313 | 5_4:-67686384 | Msa0866230:intron |
| ATAGATTGTAAGGGAGGTGT+TGG | 0.481351 | 5_4:-67685242 | Msa0866230:intron |
| ACCTTCTATATGGTGCCCTT+CGG | 0.482429 | 5_4:+67686711 | None:intergenic |
| TACCCAGTCCAATCAAAGTA+AGG | 0.487570 | 5_4:+67686382 | None:intergenic |
| AAGGAGTGCTTCCAGAAGTT+GGG | 0.495069 | 5_4:-67684551 | Msa0866230:CDS |
| ACAATCCGTTTACCAGATAT+GGG | 0.495773 | 5_4:+67686106 | None:intergenic |
| CCAAAAGCAACAGGTCCTCC+AGG | 0.504498 | 5_4:+67684325 | None:intergenic |
| TCAGCTATAACAATATGAGC+TGG | 0.513041 | 5_4:+67686082 | None:intergenic |
| ATATGTGCAAAGTTCTGTTA+TGG | 0.524960 | 5_4:-67684301 | Msa0866230:CDS |
| CAGACTCACTTGGTGAAGGA+TGG | 0.527445 | 5_4:-67686447 | Msa0866230:CDS |
| TGCAAAGTTATGTTATGGTA+TGG | 0.533698 | 5_4:-67684240 | Msa0866230:CDS |
| TGCAAAGTTCTGTTATGGTA+TGG | 0.538349 | 5_4:-67684296 | Msa0866230:CDS |
| GGATGGCATTGTTGTTCCGA+AGG | 0.540028 | 5_4:-67686727 | Msa0866230:CDS |
| ATATGTGCAAAGTTATGTTA+TGG | 0.544554 | 5_4:-67684245 | Msa0866230:CDS |
| GCCGCTCGGATTATTCAGCC+TGG | 0.550022 | 5_4:-67685214 | Msa0866230:CDS |
| GGTTATATTGCGTGAAGAGA+GGG | 0.555033 | 5_4:-67686426 | Msa0866230:CDS |
| AAGAATGAGAGAAACATGTC+GGG | 0.558510 | 5_4:-67685833 | Msa0866230:intron |
| AGGTGTTGGATGCAGCCGCT+CGG | 0.560148 | 5_4:-67685228 | Msa0866230:CDS |
| TGATTCATAGATTGTAAGGG+AGG | 0.563117 | 5_4:-67685248 | Msa0866230:intron |
| GTTGGGTATTCTTCCTCGAA+AGG | 0.563321 | 5_4:-67684534 | Msa0866230:intron |
| CAGCTATAACAATATGAGCT+GGG | 0.578195 | 5_4:+67686083 | None:intergenic |
| AAAGAATGAGAGAAACATGT+CGG | 0.582562 | 5_4:-67685834 | Msa0866230:CDS |
| TGGTTATATTGCGTGAAGAG+AGG | 0.595369 | 5_4:-67686427 | Msa0866230:CDS |
| AAGGCAAAGGTATCCTCAGT+TGG | 0.599392 | 5_4:-67686481 | Msa0866230:CDS |
| CAGCCTGGTGTGACAACTGA+TGG | 0.599774 | 5_4:-67685199 | Msa0866230:CDS |
| ATATTGCGTGAAGAGAGGGC+AGG | 0.604163 | 5_4:-67686422 | Msa0866230:CDS |
| ATCAGTGCATCTGAAGGCAA+AGG | 0.606762 | 5_4:-67686494 | Msa0866230:CDS |
| GCACAAATCAGTGCATCTGA+AGG | 0.608305 | 5_4:-67686500 | Msa0866230:CDS |
| AATTGATTCATAGATTGTAA+GGG | 0.618613 | 5_4:-67685251 | Msa0866230:intron |
| ACACCATCAGTTGTCACACC+AGG | 0.625357 | 5_4:+67685196 | None:intergenic |
| CAGGTCCTCCAGGAATGTCG+TGG | 0.625588 | 5_4:+67684335 | None:intergenic |
| CTGCTCTTGCAAGGGCACTG+TGG | 0.631683 | 5_4:-67686135 | Msa0866230:intron |
| TATTGCGTGAAGAGAGGGCA+GGG | 0.632056 | 5_4:-67686421 | Msa0866230:CDS |
| ACACAGAATTCAGACTCACT+TGG | 0.641555 | 5_4:-67686457 | Msa0866230:CDS |
| GATGGCATTGTTGTTCCGAA+GGG | 0.642025 | 5_4:-67686726 | Msa0866230:CDS |
| AATTCAGACTCACTTGGTGA+AGG | 0.644701 | 5_4:-67686451 | Msa0866230:CDS |
| TGAATTCTGTGTACCAACTG+AGG | 0.648352 | 5_4:+67686468 | None:intergenic |
| CACATCCACGACATTCCTGG+AGG | 0.714031 | 5_4:-67684340 | Msa0866230:CDS |
| ACCAGGCTGAATAATCCGAG+CGG | 0.746152 | 5_4:+67685213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTTTAATGAATTTA+TGG | - | chr5_4:67686387-67686406 | Msa0866230:CDS | 10.0% |
| !! | ATTTAATATTTATAGCAGAT+TGG | - | chr5_4:67684265-67684284 | Msa0866230:CDS | 15.0% |
| !! | TAAAAAAAAAGAAAGAAGAA+GGG | + | chr5_4:67686378-67686397 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAGAAAGAAGA+AGG | + | chr5_4:67686379-67686398 | None:intergenic | 15.0% |
| !!! | TTGGTTTTAGCAAAATAATT+GGG | + | chr5_4:67684883-67684902 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTAGCAAAATAAT+TGG | + | chr5_4:67684884-67684903 | None:intergenic | 20.0% |
| !! | CTTAAATTAGAAAAAATGCA+AGG | + | chr5_4:67685036-67685055 | None:intergenic | 20.0% |
| !! | AATTAATATCAGTTAGAAAG+TGG | + | chr5_4:67685167-67685186 | None:intergenic | 20.0% |
| !! | TTGTAAATTGCAAAAAATAG+TGG | - | chr5_4:67685340-67685359 | Msa0866230:intron | 20.0% |
| !!! | AAGAAAAACTATGTTCTTTT+AGG | - | chr5_4:67685663-67685682 | Msa0866230:intron | 20.0% |
| !!! | AAATTGATTCATAGATTGTA+AGG | - | chr5_4:67685796-67685815 | Msa0866230:intron | 20.0% |
| !!! | AATTGATTCATAGATTGTAA+GGG | - | chr5_4:67685797-67685816 | Msa0866230:intron | 20.0% |
| !!! | AACTTGTTTATTGTGTAATA+AGG | - | chr5_4:67685993-67686012 | Msa0866230:intron | 20.0% |
| !! | ACTTGTTTATTGTGTAATAA+GGG | - | chr5_4:67685994-67686013 | Msa0866230:intron | 20.0% |
| !!! | TTTTTAATAAGTGATTGACT+TGG | - | chr5_4:67686026-67686045 | Msa0866230:intron | 20.0% |
| !!! | TTTTAATAAGTGATTGACTT+GGG | - | chr5_4:67686027-67686046 | Msa0866230:intron | 20.0% |
| !!! | AGTGTTTTTTATGTTGATTT+TGG | - | chr5_4:67686222-67686241 | Msa0866230:intron | 20.0% |
| !!! | AATCACAGCTTATTTCTTTT+TGG | + | chr5_4:67684239-67684258 | None:intergenic | 25.0% |
| !! | GTTATTAGTGATTAGCATTT+TGG | - | chr5_4:67684292-67684311 | Msa0866230:CDS | 25.0% |
| ! | CTGTCAAAAGATATCAAAAT+TGG | + | chr5_4:67684495-67684514 | None:intergenic | 25.0% |
| !!! | AGGAATGTTTTAAATCTTCA+TGG | - | chr5_4:67684520-67684539 | Msa0866230:intron | 25.0% |
| !!! | TGGTTTTAGCAAAATAATTG+GGG | + | chr5_4:67684882-67684901 | None:intergenic | 25.0% |
| !! | CAAGAGCAGAAATAAAATTT+TGG | + | chr5_4:67684902-67684921 | None:intergenic | 25.0% |
| ! | TCATATTGTTATAGCTGATT+GGG | - | chr5_4:67684971-67684990 | Msa0866230:intron | 25.0% |
| !! | TATTTTTCATAATATACCCG+AGG | - | chr5_4:67685090-67685109 | Msa0866230:intron | 25.0% |
| ! | TTCATATTTCAACGTAAAAC+TGG | - | chr5_4:67685300-67685319 | Msa0866230:intron | 25.0% |
| !! | TTTTTGCAATTTACAACACA+GGG | + | chr5_4:67685336-67685355 | None:intergenic | 25.0% |
| !!! | TTTTTTGCAATTTACAACAC+AGG | + | chr5_4:67685337-67685356 | None:intergenic | 25.0% |
| !! | GTGTTATGTGAATAAACTTT+TGG | - | chr5_4:67685701-67685720 | Msa0866230:intron | 25.0% |
| ! | TTATCTTTCGTCTTGTATAT+TGG | - | chr5_4:67685740-67685759 | Msa0866230:intron | 25.0% |
| !! | GATTTTGCTCATGAAATTTT+AGG | - | chr5_4:67685880-67685899 | Msa0866230:intron | 25.0% |
| !!! | ATAAGCTATTTCTATAGCAA+AGG | - | chr5_4:67686184-67686203 | Msa0866230:intron | 25.0% |
| ! | TTTATGGTCAATAAGATAAC+TGG | - | chr5_4:67686403-67686422 | Msa0866230:CDS | 25.0% |
| ! | GATCTTATGATCAATAGTAT+GGG | - | chr5_4:67686425-67686444 | Msa0866230:CDS | 25.0% |
| ! | ATATGTGCAAAGTTATGTTA+TGG | - | chr5_4:67686803-67686822 | Msa0866230:five_prime_UTR | 25.0% |
| !! | TGATTAGCATTTTGGTGAAA+GGG | - | chr5_4:67684300-67684319 | Msa0866230:CDS | 30.0% |
| !! | TCAGAGTTCTAAAATCAGAA+GGG | + | chr5_4:67684711-67684730 | None:intergenic | 30.0% |
| !! | ATCAGAGTTCTAAAATCAGA+AGG | + | chr5_4:67684712-67684731 | None:intergenic | 30.0% |
| !! | TAAAAGCATCAACGAAAACA+AGG | + | chr5_4:67684821-67684840 | None:intergenic | 30.0% |
| !!! | ATTTTATTTCTGCTCTTGCA+AGG | - | chr5_4:67684904-67684923 | Msa0866230:intron | 30.0% |
| !!! | TTTTATTTCTGCTCTTGCAA+GGG | - | chr5_4:67684905-67684924 | Msa0866230:intron | 30.0% |
| CTCATATTGTTATAGCTGAT+TGG | - | chr5_4:67684970-67684989 | Msa0866230:intron | 30.0% | |
| ! | AAAATGCAAGGCATCTAAAT+AGG | + | chr5_4:67685024-67685043 | None:intergenic | 30.0% |
| TTTCTCTCATTCTTTCAATC+TGG | + | chr5_4:67685209-67685228 | None:intergenic | 30.0% | |
| AAAGAATGAGAGAAACATGT+CGG | - | chr5_4:67685214-67685233 | Msa0866230:CDS | 30.0% | |
| TTCTCCATGAGAATCTAAAA+GGG | + | chr5_4:67685258-67685277 | None:intergenic | 30.0% | |
| AAACGCTATTTGACAACATT+TGG | - | chr5_4:67685403-67685422 | Msa0866230:intron | 30.0% | |
| ATAGCAGATAATAGGTTTGT+TGG | + | chr5_4:67685585-67685604 | None:intergenic | 30.0% | |
| !!! | ATGTTCTTTTAGGATAGTTG+AGG | - | chr5_4:67685673-67685692 | Msa0866230:intron | 30.0% |
| !! | GAAATTTTAGGTGAAATTGC+TGG | - | chr5_4:67685892-67685911 | Msa0866230:intron | 30.0% |
| !!! | AATTTTAGTTCAAACTGTGC+TGG | - | chr5_4:67686105-67686124 | Msa0866230:CDS | 30.0% |
| ATAAGTTGTATACCCAAACA+GGG | + | chr5_4:67686139-67686158 | None:intergenic | 30.0% | |
| TATAAGTTGTATACCCAAAC+AGG | + | chr5_4:67686140-67686159 | None:intergenic | 30.0% | |
| GGATCTTATGATCAATAGTA+TGG | - | chr5_4:67686424-67686443 | Msa0866230:CDS | 30.0% | |
| TCCTTGTATTGGAAAAATGA+TGG | + | chr5_4:67686482-67686501 | None:intergenic | 30.0% | |
| TGGTTTATGATACAACACTA+TGG | + | chr5_4:67686595-67686614 | None:intergenic | 30.0% | |
| TTGATCTACTTTGCACATAT+TGG | + | chr5_4:67686615-67686634 | None:intergenic | 30.0% | |
| ATATGTGCAAAGTTCTGTTA+TGG | - | chr5_4:67686747-67686766 | Msa0866230:exon | 30.0% | |
| TGCAAAGTTATGTTATGGTA+TGG | - | chr5_4:67686808-67686827 | Msa0866230:five_prime_UTR | 30.0% | |
| !! | GTGATTAGCATTTTGGTGAA+AGG | - | chr5_4:67684299-67684318 | Msa0866230:CDS | 35.0% |
| CTGAGTGATTCAATAGATAG+TGG | + | chr5_4:67684429-67684448 | None:intergenic | 35.0% | |
| CAATCAAAGTAAGGAAGCTT+TGG | + | chr5_4:67684660-67684679 | None:intergenic | 35.0% | |
| CAAAGCTTCCTTACTTTGAT+TGG | - | chr5_4:67684658-67684677 | Msa0866230:intron | 35.0% | |
| TTCCTTACTTTGATTGGACT+GGG | - | chr5_4:67684664-67684683 | Msa0866230:intron | 35.0% | |
| TAATTGGGGAAAGAAATGCA+AGG | + | chr5_4:67684868-67684887 | None:intergenic | 35.0% | |
| CATATCCCATATCTGGTAAA+CGG | - | chr5_4:67684937-67684956 | Msa0866230:intron | 35.0% | |
| ACAATCCGTTTACCAGATAT+GGG | + | chr5_4:67684945-67684964 | None:intergenic | 35.0% | |
| CAGCTATAACAATATGAGCT+GGG | + | chr5_4:67684968-67684987 | None:intergenic | 35.0% | |
| TCAGCTATAACAATATGAGC+TGG | + | chr5_4:67684969-67684988 | None:intergenic | 35.0% | |
| ATCTTGCATCAATTGAACCT+CGG | + | chr5_4:67685110-67685129 | None:intergenic | 35.0% | |
| ! | AGATCAAGTTGCTTGTACAT+TGG | - | chr5_4:67685126-67685145 | Msa0866230:intron | 35.0% |
| AAGAATGAGAGAAACATGTC+GGG | - | chr5_4:67685215-67685234 | Msa0866230:CDS | 35.0% | |
| CTTCTCCATGAGAATCTAAA+AGG | + | chr5_4:67685259-67685278 | None:intergenic | 35.0% | |
| !! | GCTTGATATGCTCCTTATTT+TGG | - | chr5_4:67685480-67685499 | Msa0866230:intron | 35.0% |
| CTGCAACAAACTCCAAAATA+AGG | + | chr5_4:67685495-67685514 | None:intergenic | 35.0% | |
| !!! | CTTATTTTGGAGTTTGTTGC+AGG | - | chr5_4:67685493-67685512 | Msa0866230:intron | 35.0% |
| CATCACACATAGCAGATAAT+AGG | + | chr5_4:67685593-67685612 | None:intergenic | 35.0% | |
| ATTATCTGCTATGTGTGATG+AGG | - | chr5_4:67685593-67685612 | Msa0866230:intron | 35.0% | |
| TTATCTGCTATGTGTGATGA+GGG | - | chr5_4:67685594-67685613 | Msa0866230:intron | 35.0% | |
| !!! | TTCTTTTAGGATAGTTGAGG+TGG | - | chr5_4:67685676-67685695 | Msa0866230:intron | 35.0% |
| TCTTGTATATTGGAGTAGAG+TGG | - | chr5_4:67685750-67685769 | Msa0866230:intron | 35.0% | |
| TGATTCATAGATTGTAAGGG+AGG | - | chr5_4:67685800-67685819 | Msa0866230:intron | 35.0% | |
| !! | GCCATCATTTTTCCAATACA+AGG | - | chr5_4:67686478-67686497 | Msa0866230:CDS | 35.0% |
| TACTCTAAATGCGACTAAAG+TGG | + | chr5_4:67686560-67686579 | None:intergenic | 35.0% | |
| GAAAAAGTTTACGCTTGCAA+AGG | - | chr5_4:67686649-67686668 | Msa0866230:intron | 35.0% | |
| TGCAAAGTTCTGTTATGGTA+TGG | - | chr5_4:67686752-67686771 | Msa0866230:five_prime_UTR | 35.0% | |
| !! | TAGCATTTTGGTGAAAGGGA+TGG | - | chr5_4:67684304-67684323 | Msa0866230:CDS | 40.0% |
| ! | GATATCTTTTGACAGCTCTC+AGG | - | chr5_4:67684500-67684519 | Msa0866230:intron | 40.0% |
| TGAATTCTGTGTACCAACTG+AGG | + | chr5_4:67684583-67684602 | None:intergenic | 40.0% | |
| ACACAGAATTCAGACTCACT+TGG | - | chr5_4:67684591-67684610 | Msa0866230:CDS | 40.0% | |
| ! | AATTCAGACTCACTTGGTGA+AGG | - | chr5_4:67684597-67684616 | Msa0866230:intron | 40.0% |
| TGGTTATATTGCGTGAAGAG+AGG | - | chr5_4:67684621-67684640 | Msa0866230:intron | 40.0% | |
| GGTTATATTGCGTGAAGAGA+GGG | - | chr5_4:67684622-67684641 | Msa0866230:intron | 40.0% | |
| CTTCCTTACTTTGATTGGAC+TGG | - | chr5_4:67684663-67684682 | Msa0866230:intron | 40.0% | |
| TACCCAGTCCAATCAAAGTA+AGG | + | chr5_4:67684669-67684688 | None:intergenic | 40.0% | |
| AAATCAGAAGGGACTCAAAG+CGG | + | chr5_4:67684700-67684719 | None:intergenic | 40.0% | |
| CAACGAAAACAAGGACAACA+GGG | + | chr5_4:67684812-67684831 | None:intergenic | 40.0% | |
| TCAACGAAAACAAGGACAAC+AGG | + | chr5_4:67684813-67684832 | None:intergenic | 40.0% | |
| CGTTTACCAGATATGGGATA+TGG | + | chr5_4:67684939-67684958 | None:intergenic | 40.0% | |
| GACAATCCGTTTACCAGATA+TGG | + | chr5_4:67684946-67684965 | None:intergenic | 40.0% | |
| TCTTGCATCAATTGAACCTC+GGG | + | chr5_4:67685109-67685128 | None:intergenic | 40.0% | |
| CTCATTCTTTCAATCTGGTC+TGG | + | chr5_4:67685204-67685223 | None:intergenic | 40.0% | |
| ! | AATCTAAAAGGGCGTAATGG+TGG | + | chr5_4:67685247-67685266 | None:intergenic | 40.0% |
| ! | GAGAATCTAAAAGGGCGTAA+TGG | + | chr5_4:67685250-67685269 | None:intergenic | 40.0% |
| ! | TACGCCCTTTTAGATTCTCA+TGG | - | chr5_4:67685251-67685270 | Msa0866230:intron | 40.0% |
| ! | CAGTGTTGTTAAATAGCAGC+TGG | + | chr5_4:67685441-67685460 | None:intergenic | 40.0% |
| ! | CTGATGTCTTCATTTTCACG+AGG | - | chr5_4:67685458-67685477 | Msa0866230:intron | 40.0% |
| CAAGTCAAGTCTCATACAGT+TGG | + | chr5_4:67685519-67685538 | None:intergenic | 40.0% | |
| CAACTGTATGAGACTTGACT+TGG | - | chr5_4:67685517-67685536 | Msa0866230:intron | 40.0% | |
| ! | ATAGATTGTAAGGGAGGTGT+TGG | - | chr5_4:67685806-67685825 | Msa0866230:intron | 40.0% |
| !!! | TTCAAACTGTGCTGGTTTTG+AGG | - | chr5_4:67686113-67686132 | Msa0866230:CDS | 40.0% |
| !! | GGTGTTGCTATCTCAACATA+TGG | + | chr5_4:67686347-67686366 | None:intergenic | 40.0% |
| GAAAGAAGAAGGGCTTCAAT+TGG | + | chr5_4:67686368-67686387 | None:intergenic | 40.0% | |
| TCTAAATGCGACTAAAGTGG+TGG | + | chr5_4:67686557-67686576 | None:intergenic | 40.0% | |
| AAGTTTACGCTTGCAAAGGT+TGG | - | chr5_4:67686653-67686672 | Msa0866230:intron | 40.0% | |
| ! | GTTGGTTTCAAACACAGATG+AGG | - | chr5_4:67686671-67686690 | Msa0866230:intron | 40.0% |
| GCACATATTCCAAAAGCAAC+AGG | + | chr5_4:67686735-67686754 | None:intergenic | 40.0% | |
| !!! | CACTCTAAACCTGTTGCTTT+TGG | - | chr5_4:67686779-67686798 | Msa0866230:five_prime_UTR | 40.0% |
| GCACATATTCCAAAAGCAAC+AGG | + | chr5_4:67686735-67686754 | None:intergenic | 40.0% | |
| ! | GATGGCATTGTTGTTCCGAA+GGG | - | chr5_4:67684322-67684341 | Msa0866230:CDS | 45.0% |
| ACCTTCTATATGGTGCCCTT+CGG | + | chr5_4:67684340-67684359 | None:intergenic | 45.0% | |
| GCTCAACCTCACCTTCTATA+TGG | + | chr5_4:67684350-67684369 | None:intergenic | 45.0% | |
| GCACAAATCAGTGCATCTGA+AGG | - | chr5_4:67684548-67684567 | Msa0866230:CDS | 45.0% | |
| ATCAGTGCATCTGAAGGCAA+AGG | - | chr5_4:67684554-67684573 | Msa0866230:CDS | 45.0% | |
| !! | AAGGCAAAGGTATCCTCAGT+TGG | - | chr5_4:67684567-67684586 | Msa0866230:CDS | 45.0% |
| TGATGGCTTCGACTAACTCT+TGG | + | chr5_4:67686465-67686484 | None:intergenic | 45.0% | |
| !! | TCTGGAAGCACTCCTTGTAT+TGG | + | chr5_4:67686493-67686512 | None:intergenic | 45.0% |
| !! | AAGGAGTGCTTCCAGAAGTT+GGG | - | chr5_4:67686497-67686516 | Msa0866230:CDS | 45.0% |
| GAGGAAGAATACCCAACTTC+TGG | + | chr5_4:67686511-67686530 | None:intergenic | 45.0% | |
| GTTGGGTATTCTTCCTCGAA+AGG | - | chr5_4:67686514-67686533 | Msa0866230:CDS | 45.0% | |
| !! | TATAAGAGCGCTACCTTTCG+AGG | + | chr5_4:67686530-67686549 | None:intergenic | 45.0% |
| CGAAAGGTAGCGCTCTTATA+TGG | - | chr5_4:67686530-67686549 | Msa0866230:CDS | 45.0% | |
| ATTCACATCCACGACATTCC+TGG | - | chr5_4:67686705-67686724 | Msa0866230:intron | 45.0% | |
| !!! | ACTATTTTTTTAATTAATAA+CGG | - | chr5_4:67684737-67684756 | Msa0866230:intron | 5.0% |
| ! | GGATGGCATTGTTGTTCCGA+AGG | - | chr5_4:67684321-67684340 | Msa0866230:CDS | 50.0% |
| !! | TCCGAAGGGCACCATATAGA+AGG | - | chr5_4:67684336-67684355 | Msa0866230:CDS | 50.0% |
| ! | AGGGCACCATATAGAAGGTG+AGG | - | chr5_4:67684341-67684360 | Msa0866230:CDS | 50.0% |
| ! | CAGACTCACTTGGTGAAGGA+TGG | - | chr5_4:67684601-67684620 | Msa0866230:intron | 50.0% |
| ATATTGCGTGAAGAGAGGGC+AGG | - | chr5_4:67684626-67684645 | Msa0866230:intron | 50.0% | |
| TATTGCGTGAAGAGAGGGCA+GGG | - | chr5_4:67684627-67684646 | Msa0866230:intron | 50.0% | |
| CTGTGGCCATATCCCATATC+TGG | - | chr5_4:67684930-67684949 | Msa0866230:intron | 50.0% | |
| ACCAGGCTGAATAATCCGAG+CGG | + | chr5_4:67685838-67685857 | None:intergenic | 50.0% | |
| ACACCATCAGTTGTCACACC+AGG | + | chr5_4:67685855-67685874 | None:intergenic | 50.0% | |
| ! | GTGTGACAACTGATGGTGTG+AGG | - | chr5_4:67685856-67685875 | Msa0866230:CDS | 50.0% |
| !!! | CTGGTTTTGAGGCCCTGTTT+GGG | - | chr5_4:67686124-67686143 | Msa0866230:CDS | 50.0% |
| !! | CAAGGAGTGCTTCCAGAAGT+TGG | - | chr5_4:67686496-67686515 | Msa0866230:CDS | 50.0% |
| TCAGAAGGGACTCAAAGCGG+TGG | + | chr5_4:67684697-67684716 | None:intergenic | 55.0% | |
| CAGCCTGGTGTGACAACTGA+TGG | - | chr5_4:67685849-67685868 | Msa0866230:CDS | 55.0% | |
| !!! | GCTGGTTTTGAGGCCCTGTT+TGG | - | chr5_4:67686123-67686142 | Msa0866230:CDS | 55.0% |
| CACATCCACGACATTCCTGG+AGG | - | chr5_4:67686708-67686727 | Msa0866230:intron | 55.0% | |
| CCAAAAGCAACAGGTCCTCC+AGG | + | chr5_4:67686726-67686745 | None:intergenic | 55.0% | |
| !!! | CCTGGAGGACCTGTTGCTTT+TGG | - | chr5_4:67686723-67686742 | Msa0866230:CDS | 55.0% |
| !! | CTGCTCTTGCAAGGGCACTG+TGG | - | chr5_4:67684913-67684932 | Msa0866230:intron | 60.0% |
| !! | AGGTGTTGGATGCAGCCGCT+CGG | - | chr5_4:67685820-67685839 | Msa0866230:intron | 60.0% |
| GCCGCTCGGATTATTCAGCC+TGG | - | chr5_4:67685834-67685853 | Msa0866230:CDS | 60.0% | |
| CAGGTCCTCCAGGAATGTCG+TGG | + | chr5_4:67686716-67686735 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 67684228 | 67686842 | 67684228 | ID=Msa0866230;Name=Msa0866230 |
| chr5_4 | mRNA | 67684228 | 67686842 | 67684228 | ID=Msa0866230-mRNA-1;Parent=Msa0866230;Name=Msa0866230-mRNA-1;_AED=0.31;_eAED=0.31;_QI=95|0.83|0.71|1|1|1|7|0|206 |
| chr5_4 | exon | 67684228 | 67684382 | 67684228 | ID=Msa0866230-mRNA-1:exon:21403;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67684535 | 67684610 | 67684535 | ID=Msa0866230-mRNA-1:exon:21402;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67685198 | 67685260 | 67685198 | ID=Msa0866230-mRNA-1:exon:21401;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67685834 | 67685878 | 67685834 | ID=Msa0866230-mRNA-1:exon:21400;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67686069 | 67686144 | 67686069 | ID=Msa0866230-mRNA-1:exon:21399;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67686385 | 67686555 | 67686385 | ID=Msa0866230-mRNA-1:exon:21398;Parent=Msa0866230-mRNA-1 |
| chr5_4 | exon | 67686713 | 67686842 | 67686713 | ID=Msa0866230-mRNA-1:exon:21397;Parent=Msa0866230-mRNA-1 |
| chr5_4 | five_prime_UTR | 67686748 | 67686842 | 67686748 | ID=Msa0866230-mRNA-1:five_prime_utr;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67686713 | 67686747 | 67686713 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67686385 | 67686555 | 67686385 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67686069 | 67686144 | 67686069 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67685834 | 67685878 | 67685834 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67685198 | 67685260 | 67685198 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67684535 | 67684610 | 67684535 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| chr5_4 | CDS | 67684228 | 67684382 | 67684228 | ID=Msa0866230-mRNA-1:cds;Parent=Msa0866230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
