AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500360 MtrunA17_Chr3g0134331 77.989 368 9 3 1 350 1 314 0.0 543
Msa0500360 MtrunA17_Chr4g0053451 41.713 362 116 7 2 330 6 305 3.07e-76 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500360 AT1G02740.1 42.462 325 113 3 33 336 52 323 9.22e-82 252
Msa0500360 AT4G37280.1 39.181 342 121 5 33 341 29 316 7.11e-75 234

Find 67 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACGATCCACGAGGCTTTC+TGG 0.172555 3_4:+40645919 None:intergenic
TGCTGTTCTCAACATCTTCT+TGG 0.245431 3_4:+40642463 None:intergenic
TAGGAGGTGTTCTTTGTTGC+TGG 0.251794 3_4:-40646617 Msa0500360:five_prime_UTR
AAGGGAGAGAAACTATTTAA+AGG 0.289039 3_4:-40642288 Msa0500360:three_prime_UTR
CATAAGTGTCTTAGCTCTTA+AGG 0.290922 3_4:-40643015 Msa0500360:CDS
CACCTAGTGCTACTGCGTTT+TGG 0.294217 3_4:+40646540 None:intergenic
AATTGCTTCTTTAGTGTTAG+TGG 0.314127 3_4:+40644082 None:intergenic
GAGCATTTGTTACGTCTCTT+TGG 0.315634 3_4:-40643117 Msa0500360:intron
AACATCCGTATTTCCATAAC+AGG 0.319709 3_4:+40642941 None:intergenic
TATCGTTTGGACAAGCTTCT+TGG 0.319781 3_4:+40643166 None:intergenic
TTGAATATGTCGTTCACATT+AGG 0.321893 3_4:+40643832 None:intergenic
CTTGCACTTGATGAGAAATA+TGG 0.334212 3_4:-40645956 Msa0500360:CDS
CACAAATACTTGACTTTCTC+AGG 0.343256 3_4:-40642662 Msa0500360:intron
AAGAAGAACTAGAATGAAAA+TGG 0.345730 3_4:-40646515 Msa0500360:exon
TCAAGTGTTACTTGTAGTAT+TGG 0.370525 3_4:-40642333 Msa0500360:three_prime_UTR
GTTGCACTTGCACCCTGTTA+TGG 0.379206 3_4:-40642954 Msa0500360:CDS
TAGATTTAATTAGTTGTTCA+AGG 0.381785 3_4:-40642249 Msa0500360:three_prime_UTR
AAAGAATGATTCTCTGGTTA+AGG 0.387942 3_4:-40644402 Msa0500360:intron
TTGTTCCATGCTAACATTGA+AGG 0.392194 3_4:-40642708 Msa0500360:CDS
TTTACTGCAGTTGGGATGAA+TGG 0.398180 3_4:-40646030 Msa0500360:intron
TAATTAGTTGTTCAAGGAAA+AGG 0.413446 3_4:-40642243 Msa0500360:three_prime_UTR
TTTGCAAAATGCTGGCCATT+TGG 0.416533 3_4:-40642907 Msa0500360:CDS
ATCGTTCCTTCTGCTATATA+TGG 0.417923 3_4:-40643144 Msa0500360:CDS
AGGAGGTGTTCTTTGTTGCT+GGG 0.420028 3_4:-40646616 Msa0500360:five_prime_UTR
TCCGTTTCTCCTTACGATGA+AGG 0.428559 3_4:-40646418 Msa0500360:CDS
GCAGAAGGAACGATATCGTT+TGG 0.430072 3_4:+40643153 None:intergenic
TATCTGACCATTCGAACTCT+TGG 0.433463 3_4:+40645898 None:intergenic
AGAATGCTTGTTACAAATGC+AGG 0.437753 3_4:-40642389 Msa0500360:three_prime_UTR
GATTACAGATTGAAGAAAAG+TGG 0.438131 3_4:-40643799 Msa0500360:CDS
TCTCTCCCTTAATCCTGAAA+AGG 0.451248 3_4:+40642301 None:intergenic
AAAACGAAAGAATGATTCTC+TGG 0.464533 3_4:-40644408 Msa0500360:CDS
TGCACCCTGTTATGGAAATA+CGG 0.466904 3_4:-40642946 Msa0500360:CDS
TCCTTTCATAATTTCTTCAA+CGG 0.472345 3_4:+40643254 None:intergenic
TCCTTCATCGTAAGGAGAAA+CGG 0.473763 3_4:+40646417 None:intergenic
CTTGGACATGATAAGAAGAA+AGG 0.478796 3_4:+40642481 None:intergenic
TTTGAGTTTATTACTCATCT+CGG 0.485685 3_4:-40644049 Msa0500360:CDS
CGACACATTGATAGAACTCC+AGG 0.487335 3_4:-40642685 Msa0500360:CDS
TTATTGTACAAGAGCATCAC+TGG 0.493203 3_4:+40643204 None:intergenic
TCCGTTGAAGAAATTATGAA+AGG 0.507459 3_4:-40643255 Msa0500360:CDS
TTACTGCAGTTGGGATGAAT+GGG 0.516086 3_4:-40646029 Msa0500360:intron
TTCTTGTCTTTATGAAGCCA+AGG 0.516398 3_4:-40646371 Msa0500360:intron
ACTTTCTCTCCTTCATCGTA+AGG 0.528874 3_4:+40646409 None:intergenic
TGAATGTTGACAAGTTTGTC+CGG 0.531580 3_4:+40644109 None:intergenic
GAAAGTCAAGTATTTGTGCC+TGG 0.560002 3_4:+40642667 None:intergenic
TGTTATGGAAATACGGATGT+TGG 0.573911 3_4:-40642939 Msa0500360:CDS
TGCAAGTGCAACAATTAAGT+CGG 0.584029 3_4:+40642965 None:intergenic
TTAGCATGGAACAATAACTC+TGG 0.593094 3_4:+40642717 None:intergenic
GGATCGTCCAAGAGTTCGAA+TGG 0.602928 3_4:-40645905 Msa0500360:intron
AAATGTAATGCAGTTGCAAG+AGG 0.606984 3_4:-40644434 Msa0500360:intron
TGTGTGAGGCTGATTCCAAA+TGG 0.612083 3_4:+40642892 None:intergenic
GAATGCTTGTTACAAATGCA+GGG 0.615375 3_4:-40642388 Msa0500360:three_prime_UTR
TGTCGCCTTCAATGTTAGCA+TGG 0.620025 3_4:+40642703 None:intergenic
AACCAAAACGCAGTAGCACT+AGG 0.621202 3_4:-40646542 Msa0500360:five_prime_UTR
TGCAGTTGGGATGAATGGGT+TGG 0.622269 3_4:-40646025 Msa0500360:intron
TTTGGAATCAGCCTCACACA+TGG 0.625253 3_4:-40642889 Msa0500360:CDS
TCAGCACCATATATAGCAGA+AGG 0.633177 3_4:+40643138 None:intergenic
GTTTATTACTCATCTCGGCA+AGG 0.637047 3_4:-40644044 Msa0500360:intron
TTGGAATCAGCCTCACACAT+GGG 0.640684 3_4:-40642888 Msa0500360:intron
ATAATATCACATAGCTTCTG+CGG 0.641242 3_4:-40642416 Msa0500360:exon
CTTCATAAAGACAAGAAGTG+TGG 0.647600 3_4:+40646377 None:intergenic
TAGCAATAAACCCATGTGTG+AGG 0.649617 3_4:+40642878 None:intergenic
GAACTCTTGGACGATCCACG+AGG 0.665911 3_4:+40645911 None:intergenic
AACATACTGAGGAAAATATG+CGG 0.687491 3_4:-40645985 Msa0500360:CDS
AAGAATGCCAGAAAGCCTCG+TGG 0.700259 3_4:-40645926 Msa0500360:CDS
TCGTTCACATTAGGAGTACG+AGG 0.705008 3_4:+40643841 None:intergenic
TCGATTGATGAAACATACTG+AGG 0.706974 3_4:-40645996 Msa0500360:CDS
ACATCCGTATTTCCATAACA+GGG 0.747296 3_4:+40642942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAATTTAACATGAT+TGG - chr3_4:40643506-40643525 Msa0500360:intron 10.0%
!! AATTTAAATTTAACATGATT+GGG - chr3_4:40643507-40643526 Msa0500360:intron 10.0%
!! TAATTTAACATAAAATTAAG+AGG + chr3_4:40646240-40646259 None:intergenic 10.0%
!!! TTGTTTAACCTATTAATTTT+CGG + chr3_4:40642593-40642612 None:intergenic 15.0%
!!! AAGTACTTTTTTTTTTTTGA+AGG + chr3_4:40643303-40643322 None:intergenic 15.0%
!!! ATGTGAATTGTATTTTTAAT+AGG + chr3_4:40643431-40643450 None:intergenic 15.0%
!! TATTAAAAATACAATTCACA+TGG - chr3_4:40643430-40643449 Msa0500360:intron 15.0%
!!! TTGTTATTAGTATTATTTTC+AGG - chr3_4:40643555-40643574 Msa0500360:intron 15.0%
!!! TGTTATTAGTATTATTTTCA+GGG - chr3_4:40643556-40643575 Msa0500360:intron 15.0%
!!! TATTTTAATTTCATATGCTT+TGG - chr3_4:40643814-40643833 Msa0500360:CDS 15.0%
!!! TTTAAATTTTAATTTGTACC+AGG - chr3_4:40644496-40644515 Msa0500360:intron 15.0%
!! TATTTATTCAGTCAATATTT+AGG - chr3_4:40645370-40645389 Msa0500360:intron 15.0%
!! TTAAATGTTAAATTAGTCAT+TGG - chr3_4:40646276-40646295 Msa0500360:intron 15.0%
!!! ATTTTTTTTTGGAGTAAAGT+AGG - chr3_4:40642228-40642247 Msa0500360:three_prime_UTR 20.0%
!! TATAGTGAAAATGTTGAATT+AGG + chr3_4:40642565-40642584 None:intergenic 20.0%
!! ATAGTATAAATAGTAGAGAT+AGG - chr3_4:40643062-40643081 Msa0500360:intron 20.0%
!! CATGTTAAATTTAAATTACG+AGG + chr3_4:40643504-40643523 None:intergenic 20.0%
!!! GTTATTAGTATTATTTTCAG+GGG - chr3_4:40643557-40643576 Msa0500360:intron 20.0%
!! AATGCCATAAAAAGTTTAAT+AGG + chr3_4:40643727-40643746 None:intergenic 20.0%
!!! TATATCCTTATCATTTTGTA+TGG + chr3_4:40643845-40643864 None:intergenic 20.0%
!!! AATTTTCTTTTGAGTTTGAA+TGG + chr3_4:40643949-40643968 None:intergenic 20.0%
!! ATTCAAACTCAAAAGAAAAT+TGG - chr3_4:40643948-40643967 Msa0500360:intron 20.0%
!! TTAGGAATGTAATCATTATA+GGG - chr3_4:40644110-40644129 Msa0500360:CDS 20.0%
!! TTCTTTGTAGAAAAGATAAT+AGG - chr3_4:40644148-40644167 Msa0500360:intron 20.0%
!!! TTATTTTTCTTGTAGTTATG+TGG - chr3_4:40644336-40644355 Msa0500360:intron 20.0%
!! TATCATATATGATTATTTCC+TGG + chr3_4:40644517-40644536 None:intergenic 20.0%
!! ATAAACTATGTCAAATTAGT+CGG - chr3_4:40644582-40644601 Msa0500360:intron 20.0%
!!! TTACAACTTTTTTTGACTAT+AGG - chr3_4:40644676-40644695 Msa0500360:intron 20.0%
!!! TACAACTTTTTTTGACTATA+GGG - chr3_4:40644677-40644696 Msa0500360:intron 20.0%
!! ACTATAGGGTATAATATAAT+TGG - chr3_4:40644691-40644710 Msa0500360:intron 20.0%
!! TTTATTGTTTGCTTAATATC+AGG - chr3_4:40644715-40644734 Msa0500360:intron 20.0%
!!! TATATATCATTTTGGAGTAA+CGG - chr3_4:40645179-40645198 Msa0500360:intron 20.0%
!! ATCTAATTGTAAAAAGATTG+AGG + chr3_4:40645325-40645344 None:intergenic 20.0%
!!! AAGCTGTTATTTTAGAAAAA+GGG + chr3_4:40645351-40645370 None:intergenic 20.0%
!!! TAAGCTGTTATTTTAGAAAA+AGG + chr3_4:40645352-40645371 None:intergenic 20.0%
!! ATTACAGTTTAATTCTATGT+TGG - chr3_4:40645570-40645589 Msa0500360:intron 20.0%
!! TTTAATTCTATGTTGGATAT+AGG - chr3_4:40645577-40645596 Msa0500360:intron 20.0%
!! TAGATTTAATTAGTTGTTCA+AGG - chr3_4:40646615-40646634 Msa0500360:five_prime_UTR 20.0%
!!! GCGTTTTGGTTTTTATTAAA+TGG + chr3_4:40642313-40642332 None:intergenic 25.0%
! AAGAAGAACTAGAATGAAAA+TGG - chr3_4:40642349-40642368 Msa0500360:three_prime_UTR 25.0%
! GGTTTAAATAAGAACGAAAA+AGG + chr3_4:40642544-40642563 None:intergenic 25.0%
! ATACTCTTCCGAAAATTAAT+AGG - chr3_4:40642582-40642601 Msa0500360:intron 25.0%
! TTGAATACAAACATAAACGA+TGG - chr3_4:40642614-40642633 Msa0500360:intron 25.0%
!!! TTTTGTTTTCGTAACTCTAA+GGG - chr3_4:40642701-40642720 Msa0500360:CDS 25.0%
!!! ATTCAATTTTCCTTGTTTCA+GGG - chr3_4:40642724-40642743 Msa0500360:CDS 25.0%
! TATGCATGCTATAAAAAACA+AGG + chr3_4:40643045-40643064 None:intergenic 25.0%
!!! GTTGTTTTCATAACCTATTT+TGG + chr3_4:40643199-40643218 None:intergenic 25.0%
! ATAAATTATATGGTCCTGTT+TGG + chr3_4:40643371-40643390 None:intergenic 25.0%
! ACAAGTTATTATCCAAAACT+TGG + chr3_4:40643601-40643620 None:intergenic 25.0%
!!! AGTTTTGGATAATAACTTGT+TGG - chr3_4:40643601-40643620 Msa0500360:intron 25.0%
!!! GTTTTGGATAATAACTTGTT+GGG - chr3_4:40643602-40643621 Msa0500360:intron 25.0%
! AATGCCATCAAAAGTTTAAT+AGG + chr3_4:40643670-40643689 None:intergenic 25.0%
!! TTGATGGCATTTGTATATAA+TGG - chr3_4:40643679-40643698 Msa0500360:intron 25.0%
!! ACCTCCTATTAAACTTTTTA+TGG - chr3_4:40643720-40643739 Msa0500360:intron 25.0%
! TTTATGGCATTTGTGTATAA+TGG - chr3_4:40643736-40643755 Msa0500360:intron 25.0%
! ATCTACCATACAAAATGATA+AGG - chr3_4:40643837-40643856 Msa0500360:CDS 25.0%
! ACAAAATGATAAGGATATAG+AGG - chr3_4:40643846-40643865 Msa0500360:CDS 25.0%
! CAAAATGATAAGGATATAGA+GGG - chr3_4:40643847-40643866 Msa0500360:CDS 25.0%
! TAACAATTGTACTGTTGTAT+GGG - chr3_4:40643983-40644002 Msa0500360:intron 25.0%
! ATAGATAAGGATGTTATGAT+GGG - chr3_4:40644056-40644075 Msa0500360:CDS 25.0%
! CTTAGGAATGTAATCATTAT+AGG - chr3_4:40644109-40644128 Msa0500360:CDS 25.0%
! TAATCATTATAGGGAAAGTT+TGG - chr3_4:40644119-40644138 Msa0500360:CDS 25.0%
! AATCATTATAGGGAAAGTTT+GGG - chr3_4:40644120-40644139 Msa0500360:CDS 25.0%
!!! TAAACCAATCTAAGACATTT+TGG - chr3_4:40644404-40644423 Msa0500360:CDS 25.0%
!!! AAACCAATCTAAGACATTTT+GGG - chr3_4:40644405-40644424 Msa0500360:CDS 25.0%
! TTAATATCAGGAAAAACTTG+CGG - chr3_4:40644727-40644746 Msa0500360:intron 25.0%
!! TTTGAGTTTATTACTCATCT+CGG - chr3_4:40644815-40644834 Msa0500360:intron 25.0%
! TTCAACACAAAGCTTAAATA+TGG + chr3_4:40645117-40645136 None:intergenic 25.0%
! TCCTTTCATAATTTCTTCAA+CGG + chr3_4:40645613-40645632 None:intergenic 25.0%
!! ACAAGATGGTTATTTCATTT+AGG - chr3_4:40645792-40645811 Msa0500360:intron 25.0%
!!! TTCTGTAAAGCTTTATTATC+CGG - chr3_4:40646063-40646082 Msa0500360:intron 25.0%
! AATGTTAAATTAGTCATTGG+TGG - chr3_4:40646279-40646298 Msa0500360:intron 25.0%
! TTCTGTAACTATCTATTTCA+TGG - chr3_4:40646325-40646344 Msa0500360:intron 25.0%
! TAATTAGTTGTTCAAGGAAA+AGG - chr3_4:40646621-40646640 Msa0500360:five_prime_UTR 25.0%
!!! TTTTTTTGGAGTAAAGTAGG+AGG - chr3_4:40642231-40642250 Msa0500360:three_prime_UTR 30.0%
AAAGGAAAGAAAAACGAGAA+AGG + chr3_4:40642526-40642545 None:intergenic 30.0%
!!! GTTTTGTTTTCGTAACTCTA+AGG - chr3_4:40642700-40642719 Msa0500360:CDS 30.0%
!! GATTCAATTTTCCTTGTTTC+AGG - chr3_4:40642723-40642742 Msa0500360:CDS 30.0%
AACATACTGAGGAAAATATG+CGG - chr3_4:40642879-40642898 Msa0500360:intron 30.0%
TTTCAATGCTTTAACTACTC+AGG - chr3_4:40642994-40643013 Msa0500360:CDS 30.0%
CATGCTATAAAAAACAAGGA+AGG + chr3_4:40643041-40643060 None:intergenic 30.0%
!! TTAGTATTATTTTCAGGGGA+AGG - chr3_4:40643561-40643580 Msa0500360:intron 30.0%
!! TAGTATTATTTTCAGGGGAA+GGG - chr3_4:40643562-40643581 Msa0500360:intron 30.0%
! ACCTCCTATTAAACTTTTGA+TGG - chr3_4:40643663-40643682 Msa0500360:intron 30.0%
GCCATAAAAAGTTTAATAGG+AGG + chr3_4:40643724-40643743 None:intergenic 30.0%
GACGAAATCAACGAATAATT+TGG - chr3_4:40643900-40643919 Msa0500360:intron 30.0%
GTAACAATTGTACTGTTGTA+TGG - chr3_4:40643982-40644001 Msa0500360:intron 30.0%
AACTCACTGTTTCATAGATA+AGG - chr3_4:40644043-40644062 Msa0500360:intron 30.0%
CATAGATAAGGATGTTATGA+TGG - chr3_4:40644055-40644074 Msa0500360:CDS 30.0%
! AAGATAATAGGTATTGTCCT+AGG - chr3_4:40644160-40644179 Msa0500360:intron 30.0%
TAGTTATGTGGTAAAGTAAG+AGG - chr3_4:40644348-40644367 Msa0500360:intron 30.0%
TTTCCCAAAATGTCTTAGAT+TGG + chr3_4:40644411-40644430 None:intergenic 30.0%
AAAACGAAAGAATGATTCTC+TGG - chr3_4:40644456-40644475 Msa0500360:intron 30.0%
AAAGAATGATTCTCTGGTTA+AGG - chr3_4:40644462-40644481 Msa0500360:intron 30.0%
AATTGCTTCTTTAGTGTTAG+TGG + chr3_4:40644785-40644804 None:intergenic 30.0%
AATTGGCTGTAAAGAAAATG+AGG + chr3_4:40644903-40644922 None:intergenic 30.0%
!! CAATTTGATATAGCTTTGGA+CGG - chr3_4:40644918-40644937 Msa0500360:intron 30.0%
TTGAATATGTCGTTCACATT+AGG + chr3_4:40645035-40645054 None:intergenic 30.0%
GATTACAGATTGAAGAAAAG+TGG - chr3_4:40645065-40645084 Msa0500360:intron 30.0%
ACACAAAGCTTAAATATGGA+GGG + chr3_4:40645113-40645132 None:intergenic 30.0%
AACACAAAGCTTAAATATGG+AGG + chr3_4:40645114-40645133 None:intergenic 30.0%
! TTTGAAAACAGTTTTCTGCT+TGG + chr3_4:40645258-40645277 None:intergenic 30.0%
ATTGGAACTTTCTATCAACT+GGG + chr3_4:40645405-40645424 None:intergenic 30.0%
TATTGGAACTTTCTATCAAC+TGG + chr3_4:40645406-40645425 None:intergenic 30.0%
TGAACACAAAAACAGATTTC+AGG + chr3_4:40645442-40645461 None:intergenic 30.0%
TCAATATAAGCAGAAAAACC+AGG + chr3_4:40645474-40645493 None:intergenic 30.0%
CATCACAAGTGGAAATATAA+AGG + chr3_4:40645544-40645563 None:intergenic 30.0%
GTAATAATAAGCATCACAAG+TGG + chr3_4:40645555-40645574 None:intergenic 30.0%
TCCGTTGAAGAAATTATGAA+AGG - chr3_4:40645609-40645628 Msa0500360:intron 30.0%
ATGAAATAACCATCTTGTCT+GGG + chr3_4:40645790-40645809 None:intergenic 30.0%
AATGAAATAACCATCTTGTC+TGG + chr3_4:40645791-40645810 None:intergenic 30.0%
AAACACAAGTATTAGAAGTC+CGG + chr3_4:40646085-40646104 None:intergenic 30.0%
ATAATATCACATAGCTTCTG+CGG - chr3_4:40646448-40646467 Msa0500360:CDS 30.0%
!! TCAAGTGTTACTTGTAGTAT+TGG - chr3_4:40646531-40646550 Msa0500360:five_prime_UTR 30.0%
! TTGGAAATGTAAACCTTTTC+AGG - chr3_4:40646550-40646569 Msa0500360:five_prime_UTR 30.0%
!! TGTAAACCTTTTCAGGATTA+AGG - chr3_4:40646557-40646576 Msa0500360:five_prime_UTR 30.0%
!! GTAAACCTTTTCAGGATTAA+GGG - chr3_4:40646558-40646577 Msa0500360:five_prime_UTR 30.0%
AAGGGAGAGAAACTATTTAA+AGG - chr3_4:40646576-40646595 Msa0500360:five_prime_UTR 30.0%
!!! TGTTGCTGGGTTTTGTTAAT+TGG - chr3_4:40642261-40642280 Msa0500360:three_prime_UTR 35.0%
CTTCATAAAGACAAGAAGTG+TGG + chr3_4:40642490-40642509 None:intergenic 35.0%
TTCTTGTCTTTATGAAGCCA+AGG - chr3_4:40642493-40642512 Msa0500360:CDS 35.0%
AGTTACGAAAACAAAACGAG+AGG + chr3_4:40642697-40642716 None:intergenic 35.0%
!! AATTTTCCTTGTTTCAGGGT+TGG - chr3_4:40642728-40642747 Msa0500360:CDS 35.0%
TTGATTGTGTTGAGAACTGT+GGG - chr3_4:40642785-40642804 Msa0500360:intron 35.0%
!!! ACTGTGGGTTTTGATTTGTT+AGG - chr3_4:40642800-40642819 Msa0500360:intron 35.0%
!!! CTGTGGGTTTTGATTTGTTA+GGG - chr3_4:40642801-40642820 Msa0500360:intron 35.0%
! TTTGTGTGTTTTACTGCAGT+TGG - chr3_4:40642825-40642844 Msa0500360:intron 35.0%
! TTGTGTGTTTTACTGCAGTT+GGG - chr3_4:40642826-40642845 Msa0500360:intron 35.0%
TCGATTGATGAAACATACTG+AGG - chr3_4:40642868-40642887 Msa0500360:intron 35.0%
CTTGCACTTGATGAGAAATA+TGG - chr3_4:40642908-40642927 Msa0500360:CDS 35.0%
! CGAATGTTTTGTAGAGCTTA+TGG - chr3_4:40643120-40643139 Msa0500360:CDS 35.0%
TTTCGTAAGCTCTCCAAAAT+AGG - chr3_4:40643183-40643202 Msa0500360:CDS 35.0%
ACATGATTGGGCGAATTAAT+TGG - chr3_4:40643519-40643538 Msa0500360:intron 35.0%
! TATCCATCTTCTCCAAGTTT+TGG - chr3_4:40643586-40643605 Msa0500360:intron 35.0%
TATCCAAAACTTGGAGAAGA+TGG + chr3_4:40643592-40643611 None:intergenic 35.0%
GCCATCAAAAGTTTAATAGG+AGG + chr3_4:40643667-40643686 None:intergenic 35.0%
AATAGGAGGTCAAACACATA+AGG + chr3_4:40643710-40643729 None:intergenic 35.0%
TCCAAAAGAGTTTGAACACT+GGG - chr3_4:40643763-40643782 Msa0500360:intron 35.0%
ATCTAGTCAAAGCTTCACAT+AGG + chr3_4:40644222-40644241 None:intergenic 35.0%
! TATGTGAAGCTTTGACTAGA+TGG - chr3_4:40644221-40644240 Msa0500360:intron 35.0%
! TAGTCCATATCTAGAGTTAG+AGG - chr3_4:40644248-40644267 Msa0500360:intron 35.0%
! AGTCCATATCTAGAGTTAGA+GGG - chr3_4:40644249-40644268 Msa0500360:intron 35.0%
GGTAAAGTAAGAGGACTTTA+TGG - chr3_4:40644357-40644376 Msa0500360:intron 35.0%
AAATGTAATGCAGTTGCAAG+AGG - chr3_4:40644430-40644449 Msa0500360:intron 35.0%
TGAATGTTGACAAGTTTGTC+CGG + chr3_4:40644758-40644777 None:intergenic 35.0%
CAGCCAATTTGATATAGCTT+TGG - chr3_4:40644914-40644933 Msa0500360:intron 35.0%
CGTCCAAAGCTATATCAAAT+TGG + chr3_4:40644920-40644939 None:intergenic 35.0%
! TTGAAATACTCCAGTCTTGT+GGG - chr3_4:40645132-40645151 Msa0500360:intron 35.0%
TTGGAACTTTCTATCAACTG+GGG + chr3_4:40645404-40645423 None:intergenic 35.0%
TAAGCAGAAAAACCAGGTAA+AGG + chr3_4:40645468-40645487 None:intergenic 35.0%
TATCAAAAACACAGCTGAAG+GGG + chr3_4:40645518-40645537 None:intergenic 35.0%
GTATCAAAAACACAGCTGAA+GGG + chr3_4:40645519-40645538 None:intergenic 35.0%
TGTATCAAAAACACAGCTGA+AGG + chr3_4:40645520-40645539 None:intergenic 35.0%
!! TTATTGTACAAGAGCATCAC+TGG + chr3_4:40645663-40645682 None:intergenic 35.0%
ATCGTTCCTTCTGCTATATA+TGG - chr3_4:40645720-40645739 Msa0500360:intron 35.0%
!!! TATGCATGTGTTGTTTTGCA+AGG - chr3_4:40645817-40645836 Msa0500360:intron 35.0%
!!! ATGCATGTGTTGTTTTGCAA+GGG - chr3_4:40645818-40645837 Msa0500360:intron 35.0%
! CATAAGTGTCTTAGCTCTTA+AGG - chr3_4:40645849-40645868 Msa0500360:intron 35.0%
TGCAAGTGCAACAATTAAGT+CGG + chr3_4:40645902-40645921 None:intergenic 35.0%
ACATCCGTATTTCCATAACA+GGG + chr3_4:40645925-40645944 None:intergenic 35.0%
AACATCCGTATTTCCATAAC+AGG + chr3_4:40645926-40645945 None:intergenic 35.0%
TGTTATGGAAATACGGATGT+TGG - chr3_4:40645925-40645944 Msa0500360:CDS 35.0%
!! AGAGTTGTTTTGCAAAATGC+TGG - chr3_4:40645949-40645968 Msa0500360:CDS 35.0%
TTAGCATGGAACAATAACTC+TGG + chr3_4:40646150-40646169 None:intergenic 35.0%
TTGTTCCATGCTAACATTGA+AGG - chr3_4:40646156-40646175 Msa0500360:intron 35.0%
CACAAATACTTGACTTTCTC+AGG - chr3_4:40646202-40646221 Msa0500360:intron 35.0%
AACTATCTATTTCATGGTGC+AGG - chr3_4:40646331-40646350 Msa0500360:intron 35.0%
CTTGGACATGATAAGAAGAA+AGG + chr3_4:40646386-40646405 None:intergenic 35.0%
! AGAATGCTTGTTACAAATGC+AGG - chr3_4:40646475-40646494 Msa0500360:CDS 35.0%
! GAATGCTTGTTACAAATGCA+GGG - chr3_4:40646476-40646495 Msa0500360:CDS 35.0%
TCCTTCATCGTAAGGAGAAA+CGG + chr3_4:40642450-40642469 None:intergenic 40.0%
ACTTTCTCTCCTTCATCGTA+AGG + chr3_4:40642458-40642477 None:intergenic 40.0%
TTTCTTCCAACCCTGAAACA+AGG + chr3_4:40642737-40642756 None:intergenic 40.0%
GTTGATTGTGTTGAGAACTG+TGG - chr3_4:40642784-40642803 Msa0500360:intron 40.0%
TTTACTGCAGTTGGGATGAA+TGG - chr3_4:40642834-40642853 Msa0500360:intron 40.0%
TTACTGCAGTTGGGATGAAT+GGG - chr3_4:40642835-40642854 Msa0500360:intron 40.0%
TATCTGACCATTCGAACTCT+TGG + chr3_4:40642969-40642988 None:intergenic 40.0%
CCTGTTTGGATAAACAGCTA+AGG + chr3_4:40643357-40643376 None:intergenic 40.0%
CCTTAGCTGTTTATCCAAAC+AGG - chr3_4:40643354-40643373 Msa0500360:intron 40.0%
CTTCCATGTTCAACTTGTAG+AGG - chr3_4:40643401-40643420 Msa0500360:intron 40.0%
GCAAGACATTCACATTGTTC+AGG - chr3_4:40643469-40643488 Msa0500360:intron 40.0%
CATTCACATTGTTCAGGAAC+TGG - chr3_4:40643475-40643494 Msa0500360:intron 40.0%
TGGGCGAATTAATTGGTACT+TGG - chr3_4:40643526-40643545 Msa0500360:intron 40.0%
GTCCAAAAGAGTTTGAACAC+TGG - chr3_4:40643762-40643781 Msa0500360:intron 40.0%
CCAAAAGAGTTTGAACACTG+GGG - chr3_4:40643764-40643783 Msa0500360:intron 40.0%
TGATTTCGTCCACTCTAGTT+GGG + chr3_4:40643890-40643909 None:intergenic 40.0%
TTGATTTCGTCCACTCTAGT+TGG + chr3_4:40643891-40643910 None:intergenic 40.0%
! GATAAGGATGTTATGATGGG+TGG - chr3_4:40644059-40644078 Msa0500360:CDS 40.0%
ACACAAGTCAAGATAGGCTT+AGG - chr3_4:40644092-40644111 Msa0500360:CDS 40.0%
! GTCCATATCTAGAGTTAGAG+GGG - chr3_4:40644250-40644269 Msa0500360:intron 40.0%
! TCCATATCTAGAGTTAGAGG+GGG - chr3_4:40644251-40644270 Msa0500360:intron 40.0%
GTGAGTTTAGATCAGAAGTG+TGG + chr3_4:40644302-40644321 None:intergenic 40.0%
CATGAACTTCAAAGACGCAT+GGG + chr3_4:40644544-40644563 None:intergenic 40.0%
ACATGAACTTCAAAGACGCA+TGG + chr3_4:40644545-40644564 None:intergenic 40.0%
! CATGTTTTGTCCCTTGTATG+AGG - chr3_4:40644638-40644657 Msa0500360:intron 40.0%
GTTTATTACTCATCTCGGCA+AGG - chr3_4:40644820-40644839 Msa0500360:intron 40.0%
GTTGAAATACTCCAGTCTTG+TGG - chr3_4:40645131-40645150 Msa0500360:intron 40.0%
ACACTTATTTCCCACAAGAC+TGG + chr3_4:40645145-40645164 None:intergenic 40.0%
CAAAAACAGATTTCAGGCAC+AGG + chr3_4:40645436-40645455 None:intergenic 40.0%
TTGTGTTCATGTCCTTTACC+TGG - chr3_4:40645453-40645472 Msa0500360:intron 40.0%
TATCGTTTGGACAAGCTTCT+TGG + chr3_4:40645701-40645720 None:intergenic 40.0%
TCAGCACCATATATAGCAGA+AGG + chr3_4:40645729-40645748 None:intergenic 40.0%
! GAGCATTTGTTACGTCTCTT+TGG - chr3_4:40645747-40645766 Msa0500360:intron 40.0%
ATAACCATCTTGTCTGGGAA+GGG + chr3_4:40645785-40645804 None:intergenic 40.0%
AATAACCATCTTGTCTGGGA+AGG + chr3_4:40645786-40645805 None:intergenic 40.0%
TGCACCCTGTTATGGAAATA+CGG - chr3_4:40645918-40645937 Msa0500360:CDS 40.0%
TTTGCAAAATGCTGGCCATT+TGG - chr3_4:40645957-40645976 Msa0500360:CDS 40.0%
TAGCAATAAACCCATGTGTG+AGG + chr3_4:40645989-40646008 None:intergenic 40.0%
GAAAGTCAAGTATTTGTGCC+TGG + chr3_4:40646200-40646219 None:intergenic 40.0%
TGCTGTTCTCAACATCTTCT+TGG + chr3_4:40646404-40646423 None:intergenic 40.0%
TCTCTCCCTTAATCCTGAAA+AGG + chr3_4:40646566-40646585 None:intergenic 40.0%
!! TAGGAGGTGTTCTTTGTTGC+TGG - chr3_4:40642247-40642266 Msa0500360:three_prime_UTR 45.0%
!! AGGAGGTGTTCTTTGTTGCT+GGG - chr3_4:40642248-40642267 Msa0500360:three_prime_UTR 45.0%
AACCAAAACGCAGTAGCACT+AGG - chr3_4:40642322-40642341 Msa0500360:three_prime_UTR 45.0%
TCCGTTTCTCCTTACGATGA+AGG - chr3_4:40642446-40642465 Msa0500360:CDS 45.0%
ACGAGAAAGGAAGAAGACCT+TGG + chr3_4:40642513-40642532 None:intergenic 45.0%
! ACGCCTCTACAAGTTGAACA+TGG + chr3_4:40643407-40643426 None:intergenic 45.0%
! CCCCAGTGTTCAAACTCTTT+TGG + chr3_4:40643767-40643786 None:intergenic 45.0%
TGTTGTATGGGAGTCAGTGT+TGG - chr3_4:40643995-40644014 Msa0500360:intron 45.0%
GTTGTATGGGAGTCAGTGTT+GGG - chr3_4:40643996-40644015 Msa0500360:intron 45.0%
!! AAGGATGTTATGATGGGTGG+TGG - chr3_4:40644062-40644081 Msa0500360:CDS 45.0%
GGTGGTACACAAGTCAAGAT+AGG - chr3_4:40644086-40644105 Msa0500360:CDS 45.0%
! GTGAAGCTTTGACTAGATGG+AGG - chr3_4:40644224-40644243 Msa0500360:intron 45.0%
! TCAGAAGTGTGGTATGTGCT+AGG + chr3_4:40644291-40644310 None:intergenic 45.0%
TTTGTCCCTTGTATGAGGTG+AGG - chr3_4:40644643-40644662 Msa0500360:intron 45.0%
TTGTCCCTTGTATGAGGTGA+GGG - chr3_4:40644644-40644663 Msa0500360:intron 45.0%
CATTCCCTCACCTCATACAA+GGG + chr3_4:40644651-40644670 None:intergenic 45.0%
GGAAAAACTTGCGGTTCTTC+CGG - chr3_4:40644736-40644755 Msa0500360:intron 45.0%
ATCTCGGCAAGGTAGCAATA+TGG - chr3_4:40644831-40644850 Msa0500360:intron 45.0%
! TCGTTCACATTAGGAGTACG+AGG + chr3_4:40645026-40645045 None:intergenic 45.0%
TGGATCGTAAGTTCATGCTG+AGG - chr3_4:40645085-40645104 Msa0500360:intron 45.0%
CAGGCACAGGCTAATCATAT+TGG + chr3_4:40645423-40645442 None:intergenic 45.0%
GCAGAAGGAACGATATCGTT+TGG + chr3_4:40645714-40645733 None:intergenic 45.0%
! TGTGTGAGGCTGATTCCAAA+TGG + chr3_4:40645975-40645994 None:intergenic 45.0%
! TTTGGAATCAGCCTCACACA+TGG - chr3_4:40645975-40645994 Msa0500360:CDS 45.0%
TTGGAATCAGCCTCACACAT+GGG - chr3_4:40645976-40645995 Msa0500360:CDS 45.0%
TGTCGCCTTCAATGTTAGCA+TGG + chr3_4:40646164-40646183 None:intergenic 45.0%
CGACACATTGATAGAACTCC+AGG - chr3_4:40646179-40646198 Msa0500360:intron 45.0%
!! AAATAATTCAATAAATTATA+TGG + chr3_4:40643381-40643400 None:intergenic 5.0%
!!! AATTATTATATATATCATTT+TGG - chr3_4:40645171-40645190 Msa0500360:intron 5.0%
!! CACCTAGTGCTACTGCGTTT+TGG + chr3_4:40642327-40642346 None:intergenic 50.0%
TGCAGTTGGGATGAATGGGT+TGG - chr3_4:40642839-40642858 Msa0500360:intron 50.0%
AAGAATGCCAGAAAGCCTCG+TGG - chr3_4:40642938-40642957 Msa0500360:CDS 50.0%
GGATCGTCCAAGAGTTCGAA+TGG - chr3_4:40642959-40642978 Msa0500360:CDS 50.0%
TCCATAGAGCCCAACTAGAG+TGG - chr3_4:40643878-40643897 Msa0500360:intron 50.0%
TCCACTCTAGTTGGGCTCTA+TGG + chr3_4:40643882-40643901 None:intergenic 50.0%
!! GATGTTATGATGGGTGGTGG+TGG - chr3_4:40644065-40644084 Msa0500360:CDS 50.0%
! GTTGCATGCTCGAAGTACCT+AGG + chr3_4:40644180-40644199 None:intergenic 50.0%
GAGCATGCAACGAGAAAGCT+TGG - chr3_4:40644189-40644208 Msa0500360:intron 50.0%
GCCCCCTCTAACTCTAGATA+TGG + chr3_4:40644255-40644274 None:intergenic 50.0%
CCATTCCCTCACCTCATACA+AGG + chr3_4:40644652-40644671 None:intergenic 50.0%
CCTTGTATGAGGTGAGGGAA+TGG - chr3_4:40644649-40644668 Msa0500360:intron 50.0%
TTAGCCCTTCCCAGACAAGA+TGG - chr3_4:40645778-40645797 Msa0500360:intron 50.0%
GTTGCACTTGCACCCTGTTA+TGG - chr3_4:40645910-40645929 Msa0500360:CDS 50.0%
GAACTCTTGGACGATCCACG+AGG + chr3_4:40642956-40642975 None:intergenic 55.0%
!! GTTATGATGGGTGGTGGTGG+TGG - chr3_4:40644068-40644087 Msa0500360:CDS 55.0%
GGACGATCCACGAGGCTTTC+TGG + chr3_4:40642948-40642967 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 40642224 40646662 40642224 ID=Msa0500360;Name=Msa0500360
chr3_4 mRNA 40642224 40646662 40642224 ID=Msa0500360-mRNA-1;Parent=Msa0500360;Name=Msa0500360-mRNA-1;_AED=0.33;_eAED=0.33;_QI=138|0.55|0.8|0.9|1|1|10|201|350
chr3_4 exon 40642224 40642533 40642224 ID=Msa0500360-mRNA-1:exon:8325;Parent=Msa0500360-mRNA-1
chr3_4 exon 40642663 40642747 40642663 ID=Msa0500360-mRNA-1:exon:8324;Parent=Msa0500360-mRNA-1
chr3_4 exon 40642889 40643047 40642889 ID=Msa0500360-mRNA-1:exon:8323;Parent=Msa0500360-mRNA-1
chr3_4 exon 40643118 40643287 40643118 ID=Msa0500360-mRNA-1:exon:8322;Parent=Msa0500360-mRNA-1
chr3_4 exon 40643796 40643875 40643796 ID=Msa0500360-mRNA-1:exon:8321;Parent=Msa0500360-mRNA-1
chr3_4 exon 40644045 40644149 40644045 ID=Msa0500360-mRNA-1:exon:8320;Parent=Msa0500360-mRNA-1
chr3_4 exon 40644403 40644443 40644403 ID=Msa0500360-mRNA-1:exon:8319;Parent=Msa0500360-mRNA-1
chr3_4 exon 40645906 40646042 40645906 ID=Msa0500360-mRNA-1:exon:8318;Parent=Msa0500360-mRNA-1
chr3_4 exon 40646128 40646141 40646128 ID=Msa0500360-mRNA-1:exon:8317;Parent=Msa0500360-mRNA-1
chr3_4 exon 40646372 40646662 40646372 ID=Msa0500360-mRNA-1:exon:8316;Parent=Msa0500360-mRNA-1
chr3_4 five_prime_UTR 40646525 40646662 40646525 ID=Msa0500360-mRNA-1:five_prime_utr;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40646372 40646524 40646372 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40646128 40646141 40646128 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40645906 40646042 40645906 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40644403 40644443 40644403 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40644045 40644149 40644045 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40643796 40643875 40643796 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40643118 40643287 40643118 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40642889 40643047 40642889 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40642663 40642747 40642663 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 CDS 40642425 40642533 40642425 ID=Msa0500360-mRNA-1:cds;Parent=Msa0500360-mRNA-1
chr3_4 three_prime_UTR 40642224 40642424 40642224 ID=Msa0500360-mRNA-1:three_prime_utr;Parent=Msa0500360-mRNA-1
Gene Sequence

>Msa0500360

ATGAAAATGGTGAATTCAAAAACAAGCAGTGACGACATTTCAGAAGATAGCAGTAGCTCTCAAACTGAAATCGAAAATCACATCTCCGTTTCTCCTTACGATGAAGGAGAGAAAGTTTTCGCATACCACACTTCTTGTCTTTATGAAGCCAAGGGTTGGAAGAAAACTTGGGATGAATGGGTTGGTATTGATCGATTGATGAAACATACTGAGGAAAATATGCGGATTAAACTTGCACTTGATGAGAAATATGGTAATGATAAGAATGCCAGAAAGCCTCGTGGATCGTCCAAGAGTTCGAATGTTGCAAGAGGCAGAAAACGAAAGAATGATTCTCTGGTTAAGGAAAAACTTGCGGTTCTTCCGGACAAACTTGTCAACATTCAGATACCACTAACACTAAAGAAGCAATTAGTTGATGATTTTGAGTTTATTACTCATCTCGGCAAGCTTGTTAAACTTCCTCGTACTCCTAATGTGAACGACATATTCAAGACTTATTTTGATTACAGATTGAAGAAAAGTGGATCGATAGCTGATTCCGTTGAAGAAATTATGAAAGGATTGAGTTGTTACTTTGACAAAGCACTGCCAGTGATGCTCTTGTACAATAATGAGCGTCAGCAGTACCAAGAAGCTTGTCCAAACGATATCGTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGGGAAAGTAGACATAAGTGTCTTAGCTCTTAAGGTTTCTCTTATTCTGCATGTCATGACTTCCGACTTAATTGTTGCACTTGCACCCTGTTATGGAAATACGGATGTTGGTAGAGTTGTTTTGCAAAATGCTGGCCATTTGGAATCAGCCTCACACATGGTCAAGTTGCCAGAGTTATTGTTCCATGCTAACATTGAAGGCGACACATTGATAGAACTCCAGGCACAAATACTTGACTTTCTCAGGTTCTTGCGAAAAAATCAGAGAGCATTTTTCCTTTCTTCTTATCATGTCCAAGAAGATGTTGAGAACAGCAGTGACAAACAAGTTTGTATTGCACATAATATCACATAG

Protein sequence

>Msa0500360

MKMVNSKTSSDDISEDSSSSQTEIENHISVSPYDEGEKVFAYHTSCLYEAKGWKKTWDEWVGIDRLMKHTEENMRIKLALDEKYGNDKNARKPRGSSKSSNVARGRKRKNDSLVKEKLAVLPDKLVNIQIPLTLKKQLVDDFEFITHLGKLVKLPRTPNVNDIFKTYFDYRLKKSGSIADSVEEIMKGLSCYFDKALPVMLLYNNERQQYQEACPNDIVPSAIYGAEHLLRLFGKVDISVLALKVSLILHVMTSDLIVALAPCYGNTDVGRVVLQNAGHLESASHMVKLPELLFHANIEGDTLIELQAQILDFLRFLRKNQRAFFLSSYHVQEDVENSSDKQVCIAHNIT*