AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0621490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621490 MtrunA17_Chr8g0373851 92.929 99 6 1 111 209 2 99 7.01e-59 180
Msa0621490 MtrunA17_Chr8g0373811 79.612 103 14 1 1 96 122 224 3.44e-45 157
Msa0621490 MtrunA17_Chr8g0373831 88.312 77 9 0 104 180 1 77 7.02e-45 144
Msa0621490 MtrunA17_Chr4g0070031 88.312 77 9 0 91 167 1624 1700 2.55e-42 152
Msa0621490 MtrunA17_Chr8g0387311 42.308 104 51 3 9 104 192 294 2.08e-17 80.1
Msa0621490 MtrunA17_Chr4g0030381 38.462 91 49 2 9 92 94 184 3.50e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621490 AT3G50780.1 53.846 104 40 2 1 96 111 214 9.61e-29 112
Msa0621490 AT3G50780.2 53.846 104 40 2 1 96 111 214 9.61e-29 112
Msa0621490 AT1G63850.1 35.238 105 58 2 9 104 142 245 3.61e-15 73.9
Msa0621490 AT5G60050.1 39.394 99 54 2 9 101 100 198 3.07e-14 71.2
Msa0621490 AT2G03140.11 46.154 78 41 1 91 167 1310 1387 3.51e-14 71.2
Msa0621490 AT2G03140.3 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.8 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.10 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.9 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.5 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.7 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.1 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.4 46.154 78 41 1 91 167 1595 1672 3.56e-14 71.2
Msa0621490 AT2G03140.2 46.154 78 41 1 91 167 1595 1672 3.58e-14 71.2
Msa0621490 AT2G03140.12 46.154 78 41 1 91 167 1595 1672 3.58e-14 71.2

Find 182 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGACAAAGTCGATGCTTTA+TGG 0.109191 4_2:+73557240 Msa0621490:three_prime_UTR
CACAGAACATTGAGTGAATT+TGG 0.124604 4_2:-73548961 None:intergenic
TCCAAACCTCTTTCAAATTT+AGG 0.154205 4_2:-73556657 None:intergenic
GGCGAAACGCTCAAGCTTTC+CGG 0.154625 4_2:+73555979 Msa0621490:three_prime_UTR
CTTATCTTGGTCCAACTTAT+TGG 0.173244 4_2:-73557025 None:intergenic
CCTCATATTCCACCTTCTTT+AGG 0.196336 4_2:+73550732 Msa0621490:CDS
ATTCCTTGTGGTTGTCATTT+TGG 0.199979 4_2:+73556291 Msa0621490:three_prime_UTR
AGAATGTTTCTTGCATTCTT+TGG 0.222458 4_2:+73549841 Msa0621490:CDS
TTGATCTCCAATGGACTTTC+CGG 0.248032 4_2:-73555904 None:intergenic
AACAGTTCAAACTATAGTTT+TGG 0.256425 4_2:+73548919 Msa0621490:five_prime_UTR
TCCACCTTCTTTAGGTGTTA+TGG 0.256584 4_2:+73550740 Msa0621490:CDS
GCTCACACCACACTATTTAA+TGG 0.258196 4_2:+73549037 Msa0621490:five_prime_UTR
CATGCTGTGAATGCATTTCT+TGG 0.260452 4_2:+73550690 Msa0621490:CDS
AGAAATAAATTTGTGGGAAT+TGG 0.269459 4_2:+73556884 Msa0621490:three_prime_UTR
CCAGCCTCATGCAGATAAAT+TGG 0.273277 4_2:+73556773 Msa0621490:three_prime_UTR
TTGAATGTGCAAAAGATTAA+AGG 0.273671 4_2:+73554359 Msa0621490:CDS
TTGGAAATATAGAGGAATTA+TGG 0.274132 4_2:+73556310 Msa0621490:three_prime_UTR
GCGACGACCCTAATCTTATA+TGG 0.277204 4_2:-73557071 None:intergenic
GGCAAATAAGTTGCTTGAAA+TGG 0.279485 4_2:+73556737 Msa0621490:three_prime_UTR
CCTCTTTCAAATTTAGGATT+AGG 0.281407 4_2:-73556651 None:intergenic
TTCTTCGCAAAGAACATCTT+TGG 0.285228 4_2:+73555958 Msa0621490:three_prime_UTR
TGGTCCAACTTATTGGTTGC+AGG 0.299205 4_2:-73557018 None:intergenic
ACGCAAATATGTTCTTCATT+AGG 0.299340 4_2:-73555463 None:intergenic
CTTGACATTGTCGACCCTTT+TGG 0.303194 4_2:-73555570 None:intergenic
TTCTTTAGGTGTTATGGCTT+GGG 0.306309 4_2:+73550746 Msa0621490:CDS
TACAGATCGTGGCCTTGATT+AGG 0.317690 4_2:+73554284 Msa0621490:intron
CTCCTTTCTTTCGCTGAACC+TGG 0.330512 4_2:-73549278 None:intergenic
ACAGATCGTGGCCTTGATTA+GGG 0.335823 4_2:+73554285 Msa0621490:intron
CTTCTTTAGGTGTTATGGCT+TGG 0.352808 4_2:+73550745 Msa0621490:CDS
GACTCAATAACCACCTTTCT+CGG 0.365422 4_2:-73549603 None:intergenic
TCCTAAATTTGAAAGAGGTT+TGG 0.365758 4_2:+73556656 Msa0621490:three_prime_UTR
TTGGTTGTGCAAGTTTCTCT+TGG 0.369421 4_2:+73550709 Msa0621490:CDS
TGTACGAGATATTGAATTTG+AGG 0.372830 4_2:-73555809 None:intergenic
CCATCATCAAGCTGCTCATA+TGG 0.373746 4_2:+73556545 Msa0621490:three_prime_UTR
AATTCACACCATATAAGATT+AGG 0.374101 4_2:+73557063 Msa0621490:three_prime_UTR
CTGCTGGAGTACAATTTGTA+AGG 0.384988 4_2:+73554323 Msa0621490:CDS
GCCTGTCCACTGATCATTAC+CGG 0.388651 4_2:-73555998 None:intergenic
GCAGTTGTACCTCCACAAAA+TGG 0.390067 4_2:-73555703 None:intergenic
ATTTCAACACTGCGAGGTTT+CGG 0.391207 4_2:+73548998 Msa0621490:five_prime_UTR
TCCAATGGTTGCCAAGTGTT+TGG 0.392168 4_2:-73556116 None:intergenic
GCAAATAAGTTGCTTGAAAT+GGG 0.399729 4_2:+73556738 Msa0621490:three_prime_UTR
AAGAGACACTATGGGCAGTT+TGG 0.400556 4_2:+73556243 Msa0621490:three_prime_UTR
AGTCTTTGCAAATCAGGCTC+TGG 0.401375 4_2:-73555867 None:intergenic
TGATAGAACAGTGATTAGAT+TGG 0.407362 4_2:+73555376 Msa0621490:intron
ACAGAACATTGAGTGAATTT+GGG 0.410742 4_2:-73548960 None:intergenic
CGATCTAGCCAGCAGGCGCT+TGG 0.413605 4_2:+73556572 Msa0621490:three_prime_UTR
ACACCAAGTCTTTGCAAATC+AGG 0.417723 4_2:-73555873 None:intergenic
ACTTTCAAATCACCACCTTA+AGG 0.419729 4_2:+73556972 Msa0621490:three_prime_UTR
GGAAGAATCTCAATGCTTAG+AGG 0.420258 4_2:+73556794 Msa0621490:three_prime_UTR
AGTTATCGAAAGCTTAAATT+CGG 0.424504 4_2:-73556358 None:intergenic
CGACAGAGTGAAACTTATCT+TGG 0.426884 4_2:-73557038 None:intergenic
GGTCATGGAATCATAATTCC+AGG 0.426978 4_2:+73550856 Msa0621490:CDS
CCTAATCCTAAATTTGAAAG+AGG 0.427935 4_2:+73556651 Msa0621490:three_prime_UTR
GTTTGGAAGAAGCATCAAAT+AGG 0.428853 4_2:+73556673 Msa0621490:three_prime_UTR
AGACTTGGTGTTTGTACATC+CGG 0.429428 4_2:+73555885 Msa0621490:three_prime_UTR
ATTCACACCATATAAGATTA+GGG 0.429753 4_2:+73557064 Msa0621490:three_prime_UTR
ATCGAAAGCTTAAATTCGGC+AGG 0.430592 4_2:-73556354 None:intergenic
TTTCATGACTTTCCATCCAA+TGG 0.430775 4_2:-73556131 None:intergenic
CCAATTTATCTGCATGAGGC+TGG 0.431124 4_2:-73556773 None:intergenic
GTTTATCATCGTTCTACTGC+TGG 0.439767 4_2:+73554307 Msa0621490:CDS
ACTCTTTGCCAAGCGCCTGC+TGG 0.443750 4_2:-73556580 None:intergenic
CCTAAAGAAGGTGGAATATG+AGG 0.451153 4_2:-73550732 None:intergenic
CAGTGACAGTTCATCTGTAA+TGG 0.451819 4_2:+73555528 Msa0621490:three_prime_UTR
GTTCGCGGAAGTTTAGTTGC+AGG 0.454226 4_2:+73556481 Msa0621490:three_prime_UTR
GTAAACATCTCCTAAGGCTT+AGG 0.457691 4_2:-73557213 None:intergenic
TAATTTCAAGAATAGAAATC+AGG 0.462085 4_2:+73556716 Msa0621490:three_prime_UTR
TTCTCCTAAAATGATTGAGC+AGG 0.465200 4_2:+73556413 Msa0621490:three_prime_UTR
TGTAAATCTTCCTAAGCCTT+AGG 0.468996 4_2:+73557203 Msa0621490:three_prime_UTR
TGATGATGGCGACCGAGATC+AGG 0.469915 4_2:-73556531 None:intergenic
GTCTTTGCAAATCAGGCTCT+GGG 0.470035 4_2:-73555866 None:intergenic
AGGTTTCGGAAGAGCTATAG+AGG 0.475120 4_2:+73549012 Msa0621490:five_prime_UTR
AAGATTAGGGTCGTCGCAAA+AGG 0.475337 4_2:+73557077 Msa0621490:three_prime_UTR
ACCAAACACTTGGCAACCAT+TGG 0.477256 4_2:+73556115 Msa0621490:three_prime_UTR
GACTCTTATAGAAAACCAAA+AGG 0.481717 4_2:+73555555 Msa0621490:three_prime_UTR
AATTTGTGGGAATTGGCATC+AGG 0.485324 4_2:+73556891 Msa0621490:three_prime_UTR
CGTGCCTGTAGTGGCGATGA+AGG 0.487453 4_2:-73549427 None:intergenic
CTATCCTTCATCGCCACTAC+AGG 0.487770 4_2:+73549423 Msa0621490:five_prime_UTR
GTGGGTCTGCTAATTGTTCA+AGG 0.488462 4_2:+73550786 Msa0621490:CDS
ATGTCTGTTACATTCAAACT+TGG 0.488523 4_2:+73549329 Msa0621490:five_prime_UTR
CCATATGAGCAGCTTGATGA+TGG 0.488631 4_2:-73556545 None:intergenic
GATGATCGACGCTGTAGTAT+TGG 0.489409 4_2:+73549510 Msa0621490:five_prime_UTR
TGAGAGTGCTGTTAAGTGTA+AGG 0.490329 4_2:+73556068 Msa0621490:three_prime_UTR
TTGGATGGAAAGTCATGAAA+AGG 0.491304 4_2:+73556134 Msa0621490:three_prime_UTR
TCATCATTGACGATTGACTC+TGG 0.492547 4_2:-73555928 None:intergenic
AGTGAAGGAATCAAAACAAA+AGG 0.493161 4_2:-73556190 None:intergenic
AATGGCAAGTGCTATTTCAT+TGG 0.494850 4_2:+73550815 Msa0621490:CDS
AACCAGGTTCAGCGAAAGAA+AGG 0.494897 4_2:+73549276 Msa0621490:five_prime_UTR
CATGTTCAGAAGAGACACTA+TGG 0.495523 4_2:+73556234 Msa0621490:three_prime_UTR
GGTAAAACTATGTGGACTAG+TGG 0.500066 4_2:+73550767 Msa0621490:CDS
GGCAAGTGCTATTTCATTGG+TGG 0.500470 4_2:+73550818 Msa0621490:CDS
ACATCTGCACAAAGCTGAGA+TGG 0.500567 4_2:+73555780 Msa0621490:three_prime_UTR
GAGATATTGAATTTGAGGTC+TGG 0.501478 4_2:-73555804 None:intergenic
CTGTCAAGTTGAGTGTGCAT+AGG 0.504433 4_2:+73549661 Msa0621490:CDS
TTCACTCACTTGCACCGTGA+CGG 0.505962 4_2:-73549475 None:intergenic
AATTGAAATCATGCCGAGAA+AGG 0.506284 4_2:+73549590 Msa0621490:exon
CAGTGCGTGAGAACCGCAAT+TGG 0.508352 4_2:+73555616 Msa0621490:three_prime_UTR
AGATCCTGCAACCAATAAGT+TGG 0.512230 4_2:+73557014 Msa0621490:three_prime_UTR
GGTGGTTATTGAGTCTATGA+AGG 0.513474 4_2:+73549611 Msa0621490:CDS
TACCACAGTGATTCAACTTG+TGG 0.514301 4_2:+73549250 Msa0621490:intron
ACCACAGTGATTCAACTTGT+GGG 0.515055 4_2:+73549251 Msa0621490:intron
TATGCTCAGAGACTAAAATC+TGG 0.515386 4_2:+73556615 Msa0621490:three_prime_UTR
AGTGATGCCAAGTGAGTGAC+TGG 0.516747 4_2:-73556952 None:intergenic
AATTGTTCAAGGAACTGTAA+TGG 0.518269 4_2:+73550797 Msa0621490:CDS
GAGCCTGATTTGCAAAGACT+TGG 0.521361 4_2:+73555870 Msa0621490:three_prime_UTR
GCAGTGTTGAAATTGATTGA+AGG 0.522672 4_2:-73548988 None:intergenic
TTCAAATTTAGGATTAGGAC+GGG 0.522702 4_2:-73556646 None:intergenic
ATTAGCTTTAGCCCTTCTCC+TGG 0.523241 4_2:-73556697 None:intergenic
TCCGGTAATGATCAGTGGAC+AGG 0.523358 4_2:+73555997 Msa0621490:three_prime_UTR
TGGAGCGCGATCTAGCCAGC+AGG 0.523628 4_2:+73556565 Msa0621490:three_prime_UTR
AGCAGGCGCTTGGCAAAGAG+TGG 0.523735 4_2:+73556582 Msa0621490:three_prime_UTR
ACAAATCAAGGAGCAGCTTA+CGG 0.524363 4_2:+73555439 Msa0621490:three_prime_UTR
CAATATCTCGTACATTAAAG+AGG 0.524991 4_2:+73555818 Msa0621490:three_prime_UTR
TGCAGTGAGAAATAAATTTG+TGG 0.525201 4_2:+73556877 Msa0621490:intron
TTGCATTCTTTGGATTCTCA+AGG 0.525461 4_2:+73549851 Msa0621490:CDS
ATTCAACTTGTGGGAAAACC+AGG 0.527755 4_2:+73549260 Msa0621490:five_prime_UTR
GACTCTGGATTGATCTCCAA+TGG 0.529884 4_2:-73555913 None:intergenic
CTGAGAATCGAAGTGGTTCG+CGG 0.530378 4_2:+73556466 Msa0621490:three_prime_UTR
TGGAATCATAATTCCAGGGC+TGG 0.530738 4_2:+73550861 Msa0621490:CDS
GTGTATATTGTTACCAATTG+CGG 0.530995 4_2:-73555629 None:intergenic
TGTACATCCGGAAAGTCCAT+TGG 0.533385 4_2:+73555897 Msa0621490:three_prime_UTR
CATCAAATAGGACCAGGAGA+AGG 0.534319 4_2:+73556685 Msa0621490:three_prime_UTR
TGGAAAGATTTCGGAACAGT+CGG 0.535969 4_2:+73549716 Msa0621490:CDS
TTTGATTTACTACCTGATCT+CGG 0.536142 4_2:+73556519 Msa0621490:three_prime_UTR
AACACTTGGCAACCATTGGA+TGG 0.536290 4_2:+73556119 Msa0621490:three_prime_UTR
GAAATATATGTTGAAGCTGT+TGG 0.541026 4_2:+73549777 Msa0621490:CDS
TGTCAAGTTGAGTGTGCATA+GGG 0.542545 4_2:+73549662 Msa0621490:CDS
GCTGTAGTATTGGTTCAGAA+TGG 0.542704 4_2:+73549520 Msa0621490:five_prime_UTR
GCAGTGAGAAATAAATTTGT+GGG 0.543229 4_2:+73556878 Msa0621490:intron
TTTCAAATTTAGGATTAGGA+CGG 0.543514 4_2:-73556647 None:intergenic
ATCAAATAGGACCAGGAGAA+GGG 0.546017 4_2:+73556686 Msa0621490:three_prime_UTR
TTTATCTGCATGAGGCTGGA+TGG 0.546716 4_2:-73556769 None:intergenic
CAGTGTTGAAATTGATTGAA+GGG 0.546861 4_2:-73548987 None:intergenic
ATTGCCTAGACTTGATTATG+AGG 0.552616 4_2:+73557263 Msa0621490:three_prime_UTR
AGGGTCGTCGCAAAAGGCTA+TGG 0.554021 4_2:+73557083 Msa0621490:three_prime_UTR
AAGACCTCATAATCAAGTCT+AGG 0.556048 4_2:-73557267 None:intergenic
TGCTGGAGTACAATTTGTAA+GGG 0.556613 4_2:+73554324 Msa0621490:CDS
ACGATGATAAACCCTAATCA+AGG 0.559474 4_2:-73554296 None:intergenic
AACTTTACCATTAAATAGTG+TGG 0.559895 4_2:-73549044 None:intergenic
TCTTCCAATTTATCTGCATG+AGG 0.563398 4_2:-73556777 None:intergenic
AAGAAAGAAAATGCCAGCCC+TGG 0.565363 4_2:-73550874 None:intergenic
GATTGCTCTGAGACAAATCA+AGG 0.567116 4_2:+73555427 Msa0621490:three_prime_UTR
GACAGTTCATCTGTAATGGA+AGG 0.570153 4_2:+73555532 Msa0621490:three_prime_UTR
ACAAAACCCAGTCACTCACT+TGG 0.578259 4_2:+73556945 Msa0621490:three_prime_UTR
CAAGAAATGCATTCACAGCA+TGG 0.578896 4_2:-73550689 None:intergenic
CATCTGCACAAAGCTGAGAT+GGG 0.579947 4_2:+73555781 Msa0621490:three_prime_UTR
ACTCTTATAGAAAACCAAAA+GGG 0.580021 4_2:+73555556 Msa0621490:three_prime_UTR
TGGACAGGCTCTCCTAGCTA+TGG 0.583120 4_2:+73556012 Msa0621490:three_prime_UTR
TTATGATCATTACCATAGCT+AGG 0.583706 4_2:-73556024 None:intergenic
ACATAGGTAAACATCTCCTA+AGG 0.583732 4_2:-73557219 None:intergenic
GATGAGTTCATTTGTGCAAG+AGG 0.586696 4_2:+73556913 Msa0621490:three_prime_UTR
TGTGGAGGTACAACTGCTGC+TGG 0.586893 4_2:+73555709 Msa0621490:three_prime_UTR
TGGCGATGAAGGATAGCTAT+CGG 0.590549 4_2:-73549416 None:intergenic
TGAAATCATGCCGAGAAAGG+TGG 0.592138 4_2:+73549593 Msa0621490:exon
AAGCATCGACTTTGTCACAT+AGG 0.596748 4_2:-73557235 None:intergenic
TCTCCTAAAATGATTGAGCA+GGG 0.608885 4_2:+73556414 Msa0621490:three_prime_UTR
GAAGCACAGTGGTTGTTCAG+AGG 0.608970 4_2:+73556156 Msa0621490:three_prime_UTR
GCCATAACACCTAAAGAAGG+TGG 0.609442 4_2:-73550741 None:intergenic
GTAAAACTATGTGGACTAGT+GGG 0.611084 4_2:+73550768 Msa0621490:CDS
GATGTTCTGATAGAGAAGAG+TGG 0.611901 4_2:+73549684 Msa0621490:CDS
GATAATTCTGAGAATCGAAG+TGG 0.614192 4_2:+73556459 Msa0621490:three_prime_UTR
AGCTTTCCGGTAATGATCAG+TGG 0.616263 4_2:+73555992 Msa0621490:three_prime_UTR
CATATATCGAAGACAAGGGA+AGG 0.617551 4_2:+73555593 Msa0621490:three_prime_UTR
TCTTCAAATCAGTGATTGCG+AGG 0.623422 4_2:+73549749 Msa0621490:CDS
GAGCAACTAACATTGTCTAC+CGG 0.626990 4_2:+73556384 Msa0621490:three_prime_UTR
TGATCTACTACACATATCAC+AGG 0.627421 4_2:-73557144 None:intergenic
CAAGCCATAACACCTAAAGA+AGG 0.628364 4_2:-73550744 None:intergenic
TCAAGCATATATCGAAGACA+AGG 0.630094 4_2:+73555588 Msa0621490:three_prime_UTR
ACAGTTCATCTGTAATGGAA+GGG 0.632090 4_2:+73555533 Msa0621490:three_prime_UTR
AAGAAGCATCAAATAGGACC+AGG 0.634670 4_2:+73556679 Msa0621490:three_prime_UTR
GTCATGGAATCATAATTCCA+GGG 0.638923 4_2:+73550857 Msa0621490:CDS
ATGGCTTGGGTAAAACTATG+TGG 0.646478 4_2:+73550759 Msa0621490:CDS
CAATCAATTTCAACACTGCG+AGG 0.647423 4_2:+73548992 Msa0621490:five_prime_UTR
ATGTTCAGAAGAGACACTAT+GGG 0.654163 4_2:+73556235 Msa0621490:three_prime_UTR
TCGAAAGCTTAAATTCGGCA+GGG 0.657128 4_2:-73556353 None:intergenic
TTAGATTGGAGCAGTCAGCA+TGG 0.666247 4_2:+73555390 Msa0621490:three_prime_UTR
AAAGCTGAACAAAATTGCAG+TGG 0.668916 4_2:+73555841 Msa0621490:three_prime_UTR
GTGCAAGTGAGTGAAAGAAG+AGG 0.679011 4_2:+73549483 Msa0621490:five_prime_UTR
CAAGCATATATCGAAGACAA+GGG 0.692685 4_2:+73555589 Msa0621490:three_prime_UTR
TTTCCAAAATGACAACCACA+AGG 0.715599 4_2:-73556294 None:intergenic
ATTGCAAAGAAATGAAACTG+CGG 0.754084 4_2:+73549808 Msa0621490:CDS
GTCATGAAAAGGAAGCACAG+TGG 0.767507 4_2:+73556145 Msa0621490:three_prime_UTR
GTGATGCCAAGTGAGTGACT+GGG 0.781211 4_2:-73556951 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATAATATGAGAAAA+TGG + chr4_2:73553027-73553046 Msa0621490:intron 10.0%
!! AATTAGAAAAATATCAAATT+GGG - chr4_2:73554230-73554249 None:intergenic 10.0%
!! TAATTAGAAAAATATCAAAT+TGG - chr4_2:73554231-73554250 None:intergenic 10.0%
!! TTATATACATATAACATATA+AGG + chr4_2:73554448-73554467 Msa0621490:intron 10.0%
!! TTTATATTATTTCCACAAAA+GGG - chr4_2:73549201-73549220 None:intergenic 15.0%
!!! TTTTATATTATTTCCACAAA+AGG - chr4_2:73549202-73549221 None:intergenic 15.0%
!!! TGTCATTAATTTTAATGATT+TGG + chr4_2:73549890-73549909 Msa0621490:intron 15.0%
!!! ATTTATAGATGCATATTTTT+TGG + chr4_2:73550135-73550154 Msa0621490:intron 15.0%
!!! TTTATAGATGCATATTTTTT+GGG + chr4_2:73550136-73550155 Msa0621490:intron 15.0%
!! GTAAATATCATTTATATAGA+TGG + chr4_2:73550231-73550250 Msa0621490:intron 15.0%
!! TTCAAAAATATATACATAAC+TGG + chr4_2:73550341-73550360 Msa0621490:intron 15.0%
!!! GATATTTTAACAAGATTTTT+TGG - chr4_2:73551014-73551033 None:intergenic 15.0%
!!! ATCACATGTTTTTTTTTTAA+AGG + chr4_2:73551391-73551410 Msa0621490:intron 15.0%
!! TAGAGTTTCAAATTTAAATT+TGG + chr4_2:73552043-73552062 Msa0621490:intron 15.0%
!! CAAAAATAAATAGTTTATTC+AGG - chr4_2:73552691-73552710 None:intergenic 15.0%
!!! CTGAATAAACTATTTATTTT+TGG + chr4_2:73552689-73552708 Msa0621490:intron 15.0%
!! TTAAGATAATAATATATAGC+CGG - chr4_2:73553081-73553100 None:intergenic 15.0%
!!! TATTTATTTTTTCAATCCTA+GGG - chr4_2:73553734-73553753 None:intergenic 15.0%
!!! TTATTTATTTTTTCAATCCT+AGG - chr4_2:73553735-73553754 None:intergenic 15.0%
!!! TTTTTTTTTTTCTTCTATCA+TGG + chr4_2:73555344-73555363 Msa0621490:intron 15.0%
!! ATTTCTTAAGTAAAAAAGAA+AGG + chr4_2:73555662-73555681 Msa0621490:three_prime_UTR 15.0%
!!! TTTTTTTTCTGGAAAGATTT+CGG + chr4_2:73549707-73549726 Msa0621490:CDS 20.0%
!!! AACTACATATTCATTTGTTA+TGG + chr4_2:73549947-73549966 Msa0621490:intron 20.0%
!! GAAACATTATGATTATGAAA+TGG + chr4_2:73550046-73550065 Msa0621490:intron 20.0%
!! TCATGTAACAAAAATAATCA+AGG - chr4_2:73550165-73550184 None:intergenic 20.0%
!! ATGATCATGTAACAAAATTT+GGG - chr4_2:73550446-73550465 None:intergenic 20.0%
!!! CAGTTAATTGAATTTTTGAA+AGG + chr4_2:73550633-73550652 Msa0621490:intron 20.0%
!! AGTAGATACATAAATAACAT+AGG - chr4_2:73550935-73550954 None:intergenic 20.0%
!!! TATCTTTGTTGTTTTGATTT+AGG - chr4_2:73551765-73551784 None:intergenic 20.0%
!!! TTCAAATTTTGCATAAAATG+TGG + chr4_2:73552067-73552086 Msa0621490:intron 20.0%
!! AAAAATCAAAGATAAGAGAA+TGG + chr4_2:73552337-73552356 Msa0621490:intron 20.0%
!! TGAAAGATATAATTCATACA+GGG - chr4_2:73552764-73552783 None:intergenic 20.0%
!! TTGAAAGATATAATTCATAC+AGG - chr4_2:73552765-73552784 None:intergenic 20.0%
!! AAAAAAAAAAAGGTCCAATA+AGG - chr4_2:73553117-73553136 None:intergenic 20.0%
!! GTCAAAGACAAAAAAAAAAA+AGG - chr4_2:73553127-73553146 None:intergenic 20.0%
!!! ATTTATTTTTTCAATCCTAG+GGG - chr4_2:73553733-73553752 None:intergenic 20.0%
!!! TTTTTTGGAATAATAACCTA+GGG - chr4_2:73553784-73553803 None:intergenic 20.0%
!!! TTTTTTTGGAATAATAACCT+AGG - chr4_2:73553785-73553804 None:intergenic 20.0%
!! ATATATACAACAATTACCTA+GGG - chr4_2:73553808-73553827 None:intergenic 20.0%
!! TATATATACAACAATTACCT+AGG - chr4_2:73553809-73553828 None:intergenic 20.0%
!!! AAAATTTAAATGAAAAGTGC+TGG - chr4_2:73553862-73553881 None:intergenic 20.0%
!! ACCTTCAAAAAAAATAATGA+GGG - chr4_2:73553979-73553998 None:intergenic 20.0%
!! TACCTTCAAAAAAAATAATG+AGG - chr4_2:73553980-73553999 None:intergenic 20.0%
!!! GACTATAAGATCATTTTATA+AGG - chr4_2:73554108-73554127 None:intergenic 20.0%
!! AATTAAATCAAATCATCCTT+AGG - chr4_2:73554424-73554443 None:intergenic 20.0%
!!! AAGGATGATTAGTTTTTTTT+TGG + chr4_2:73554467-73554486 Msa0621490:intron 20.0%
!!! AGGATGATTAGTTTTTTTTT+GGG + chr4_2:73554468-73554487 Msa0621490:intron 20.0%
!! CAATCTTTGATTATTAGATT+TGG - chr4_2:73554546-73554565 None:intergenic 20.0%
!!! GTTTAAAGTATTTAATATCC+CGG - chr4_2:73554726-73554745 None:intergenic 20.0%
!! TTCTTACAAAAAGATAATCT+GGG - chr4_2:73555760-73555779 None:intergenic 20.0%
!! TTTCTTACAAAAAGATAATC+TGG - chr4_2:73555761-73555780 None:intergenic 20.0%
!! TAATTTCAAGAATAGAAATC+AGG + chr4_2:73556716-73556735 Msa0621490:three_prime_UTR 20.0%
! GTCCTTCTTTCAATAAAAAA+AGG + chr4_2:73548855-73548874 Msa0621490:five_prime_UTR 25.0%
!!! GACCTTTTTTTATTGAAAGA+AGG - chr4_2:73548860-73548879 None:intergenic 25.0%
!! AACAGTTCAAACTATAGTTT+TGG + chr4_2:73548919-73548938 Msa0621490:five_prime_UTR 25.0%
!! ACAGTTCAAACTATAGTTTT+GGG + chr4_2:73548920-73548939 Msa0621490:five_prime_UTR 25.0%
! AACTTTACCATTAAATAGTG+TGG - chr4_2:73549047-73549066 None:intergenic 25.0%
! TCTCATCTATAGTTAACTAA+AGG + chr4_2:73549091-73549110 Msa0621490:intron 25.0%
! CTCATCTATAGTTAACTAAA+GGG + chr4_2:73549092-73549111 Msa0621490:intron 25.0%
!!! TTCTGGTTTTTCAACATATA+TGG + chr4_2:73549367-73549386 Msa0621490:five_prime_UTR 25.0%
!!! TCTGGTTTTTCAACATATAT+GGG + chr4_2:73549368-73549387 Msa0621490:five_prime_UTR 25.0%
!!! TCTATGAAGGTTGTTTTATT+AGG + chr4_2:73549624-73549643 Msa0621490:CDS 25.0%
!!! CTATGAAGGTTGTTTTATTA+GGG + chr4_2:73549625-73549644 Msa0621490:CDS 25.0%
! TGATCATGTAACAAAATTTG+GGG - chr4_2:73550445-73550464 None:intergenic 25.0%
! CATGATCATGTAACAAAATT+TGG - chr4_2:73550447-73550466 None:intergenic 25.0%
!!! ATTTGTTTTGAAAAACATGC+TGG + chr4_2:73550553-73550572 Msa0621490:intron 25.0%
! AAATTCAATTAACTGCAACA+AGG - chr4_2:73550628-73550647 None:intergenic 25.0%
!!! AATTGAATTTTTGAAAGGCT+TGG + chr4_2:73550638-73550657 Msa0621490:CDS 25.0%
! GCAATTAATTGTCTTGTAAA+AGG - chr4_2:73550972-73550991 None:intergenic 25.0%
!!! CTTTTCTCTCAATTTTTCAA+CGG - chr4_2:73551094-73551113 None:intergenic 25.0%
! ATTGAGATGAGATATATACA+AGG + chr4_2:73551135-73551154 Msa0621490:intron 25.0%
! TTGAGATGAGATATATACAA+GGG + chr4_2:73551136-73551155 Msa0621490:intron 25.0%
! TGAGTATCATGATATAATCA+TGG + chr4_2:73551367-73551386 Msa0621490:intron 25.0%
!! TTTCTGATGTGTTGTTAAAT+TGG - chr4_2:73551738-73551757 None:intergenic 25.0%
!!! TTTGTTTGCTACTTTAGATT+TGG - chr4_2:73552225-73552244 None:intergenic 25.0%
!! AATCTAAAGTAGCAAACAAA+AGG + chr4_2:73552225-73552244 Msa0621490:intron 25.0%
!!! TTGATTTTTGATTATGCTTG+TGG - chr4_2:73552326-73552345 None:intergenic 25.0%
! TGAACTGAGTAAACAAATAT+TGG - chr4_2:73552376-73552395 None:intergenic 25.0%
! TTGAAAAATGGGTAGAAATT+AGG - chr4_2:73552507-73552526 None:intergenic 25.0%
! AAAGAAATTGACAAGAAAGT+TGG - chr4_2:73552632-73552651 None:intergenic 25.0%
! ACTCAAAAAATTGTCCTTAT+TGG + chr4_2:73553100-73553119 Msa0621490:intron 25.0%
! ACATAAAAACTAATGAAGGT+TGG + chr4_2:73553247-73553266 Msa0621490:intron 25.0%
! AATGTGAGAACATCTTTAAT+GGG + chr4_2:73553326-73553345 Msa0621490:intron 25.0%
! ACAGAATACACAATTACTAT+TGG - chr4_2:73553521-73553540 None:intergenic 25.0%
! CATTAATGTATAGTGTAATG+GGG - chr4_2:73553551-73553570 None:intergenic 25.0%
! CCATTAATGTATAGTGTAAT+GGG - chr4_2:73553552-73553571 None:intergenic 25.0%
! ACCATTAATGTATAGTGTAA+TGG - chr4_2:73553553-73553572 None:intergenic 25.0%
! GTTATCTTTCAAAAGTTGAA+TGG - chr4_2:73553647-73553666 None:intergenic 25.0%
! TATTATTCCAAAAAAACCCT+AGG + chr4_2:73553789-73553808 Msa0621490:intron 25.0%
! CTTCAAAAAAAATAATGAGG+GGG - chr4_2:73553977-73553996 None:intergenic 25.0%
! CCTTCAAAAAAAATAATGAG+GGG - chr4_2:73553978-73553997 None:intergenic 25.0%
! AGAATATATGTAACATGAAG+GGG - chr4_2:73554024-73554043 None:intergenic 25.0%
! GAGAATATATGTAACATGAA+GGG - chr4_2:73554025-73554044 None:intergenic 25.0%
! AGAGAATATATGTAACATGA+AGG - chr4_2:73554026-73554045 None:intergenic 25.0%
! AAAGATCTAATCAAGATTCA+AGG - chr4_2:73554255-73554274 None:intergenic 25.0%
! TTGAATGTGCAAAAGATTAA+AGG + chr4_2:73554359-73554378 Msa0621490:CDS 25.0%
!!! TAAAGGTTGAATCTTTTTCA+TGG + chr4_2:73554376-73554395 Msa0621490:intron 25.0%
! TTATGATCATTTGATTCCTA+AGG + chr4_2:73554405-73554424 Msa0621490:intron 25.0%
! AAAGTACAGATGATTAGATT+TGG + chr4_2:73554586-73554605 Msa0621490:intron 25.0%
!! AGATGATTAGATTTGGATTT+TGG + chr4_2:73554593-73554612 Msa0621490:intron 25.0%
!! TATTTGATGACTAAAACACT+GGG - chr4_2:73554639-73554658 None:intergenic 25.0%
!! TTATTTGATGACTAAAACAC+TGG - chr4_2:73554640-73554659 None:intergenic 25.0%
!!! CATATTATCTTTTTTGCATG+AGG + chr4_2:73554815-73554834 Msa0621490:intron 25.0%
! CGTAACGAAATCTAAAAAAA+TGG + chr4_2:73554998-73555017 Msa0621490:intron 25.0%
! ACTCTTATAGAAAACCAAAA+GGG + chr4_2:73555556-73555575 Msa0621490:three_prime_UTR 25.0%
!!! CAATAGTTTTTTGTTAGTGA+AGG - chr4_2:73556208-73556227 None:intergenic 25.0%
! CTTCACTAACAAAAAACTAT+TGG + chr4_2:73556206-73556225 Msa0621490:three_prime_UTR 25.0%
!!! TTGTCATTTTGGAAATATAG+AGG + chr4_2:73556302-73556321 Msa0621490:three_prime_UTR 25.0%
! TTGGAAATATAGAGGAATTA+TGG + chr4_2:73556310-73556329 Msa0621490:three_prime_UTR 25.0%
! AGTTATCGAAAGCTTAAATT+CGG - chr4_2:73556361-73556380 None:intergenic 25.0%
!! TTTCAAATTTAGGATTAGGA+CGG - chr4_2:73556650-73556669 None:intergenic 25.0%
! AGAAATAAATTTGTGGGAAT+TGG + chr4_2:73556884-73556903 Msa0621490:three_prime_UTR 25.0%
!! TATTTGCAGATTTTTCCTTA+AGG - chr4_2:73556990-73557009 None:intergenic 25.0%
! AATTCACACCATATAAGATT+AGG + chr4_2:73557063-73557082 Msa0621490:three_prime_UTR 25.0%
! ATTCACACCATATAAGATTA+GGG + chr4_2:73557064-73557083 Msa0621490:three_prime_UTR 25.0%
ACAGAACATTGAGTGAATTT+GGG - chr4_2:73548963-73548982 None:intergenic 30.0%
! CAGTGTTGAAATTGATTGAA+GGG - chr4_2:73548990-73549009 None:intergenic 30.0%
ATGTCTGTTACATTCAAACT+TGG + chr4_2:73549329-73549348 Msa0621490:five_prime_UTR 30.0%
!! GTTGTTTTATTAGGGAAAGA+AGG + chr4_2:73549633-73549652 Msa0621490:CDS 30.0%
GAAATATATGTTGAAGCTGT+TGG + chr4_2:73549777-73549796 Msa0621490:CDS 30.0%
ATTGCAAAGAAATGAAACTG+CGG + chr4_2:73549808-73549827 Msa0621490:CDS 30.0%
AGAATGTTTCTTGCATTCTT+TGG + chr4_2:73549841-73549860 Msa0621490:CDS 30.0%
AATGAATATGTAGTTGCTAG+TGG - chr4_2:73549942-73549961 None:intergenic 30.0%
! GCATATACAAGTTTGAGTTA+AGG + chr4_2:73549971-73549990 Msa0621490:intron 30.0%
TTCTGCAGTGAAATAAAAAC+TGG + chr4_2:73550073-73550092 Msa0621490:intron 30.0%
!!! ATAGATGCATATTTTTTGGG+AGG + chr4_2:73550139-73550158 Msa0621490:intron 30.0%
GTATGCAACTCTTTATAGAA+TGG - chr4_2:73550195-73550214 None:intergenic 30.0%
!! CATTGTCTTTTGTTTGATAG+TGG + chr4_2:73550482-73550501 Msa0621490:intron 30.0%
! AAAAAAGTGTGTTGTCAAGT+TGG + chr4_2:73550506-73550525 Msa0621490:intron 30.0%
AATTGTTCAAGGAACTGTAA+TGG + chr4_2:73550797-73550816 Msa0621490:CDS 30.0%
CAAAAAGAAAGAAAGACAGA+CGG - chr4_2:73551051-73551070 None:intergenic 30.0%
!! AAAAGAAGTGTTTGAAAGAG+TGG + chr4_2:73551109-73551128 Msa0621490:intron 30.0%
!! AAAGAAGTGTTTGAAAGAGT+GGG + chr4_2:73551110-73551129 Msa0621490:intron 30.0%
!! ACATTTATAAGCGCTTTTTG+CGG + chr4_2:73551267-73551286 Msa0621490:intron 30.0%
! AATACATGGAACACTAGTTT+GGG - chr4_2:73551337-73551356 None:intergenic 30.0%
GAAAACGAACTAAGAAGAAT+CGG - chr4_2:73551473-73551492 None:intergenic 30.0%
GAGGTATAGATTAGAAAATC+TGG - chr4_2:73551495-73551514 None:intergenic 30.0%
TCTATACCTCAGAAATTGAT+TGG + chr4_2:73551505-73551524 Msa0621490:intron 30.0%
ACATTAATCTTACCGATCAA+AGG + chr4_2:73551823-73551842 Msa0621490:intron 30.0%
AATCAGAATCATCCTTTGAT+CGG - chr4_2:73551838-73551857 None:intergenic 30.0%
! ATTGAGAATTGACACTTTTG+TGG + chr4_2:73551924-73551943 Msa0621490:intron 30.0%
CAGTAATGAAAATCAGTGTT+TGG - chr4_2:73551977-73551996 None:intergenic 30.0%
!! TTCATTACTGATTCAGTTGA+AGG + chr4_2:73551987-73552006 Msa0621490:intron 30.0%
TGATTTCTATCAGTGAGAAT+AGG - chr4_2:73552108-73552127 None:intergenic 30.0%
CAATAATAAACGTAGATGTG+TGG + chr4_2:73552181-73552200 Msa0621490:intron 30.0%
! TTTTGCTTTGCTTAGTTACT+AGG - chr4_2:73552303-73552322 None:intergenic 30.0%
AATCAAAGATAAGAGAATGG+AGG + chr4_2:73552340-73552359 Msa0621490:intron 30.0%
ATCAAAGATAAGAGAATGGA+GGG + chr4_2:73552341-73552360 Msa0621490:intron 30.0%
TTGTATCACTCATTTCATAG+TGG - chr4_2:73552440-73552459 None:intergenic 30.0%
ATGAAATGAGTGATACAAAG+AGG + chr4_2:73552442-73552461 Msa0621490:intron 30.0%
! AATTAGGTATTGTGCTTTGA+GGG - chr4_2:73552491-73552510 None:intergenic 30.0%
! AAATTAGGTATTGTGCTTTG+AGG - chr4_2:73552492-73552511 None:intergenic 30.0%
GTTTGAGTGACTTGAAAAAT+GGG - chr4_2:73552518-73552537 None:intergenic 30.0%
TTAACCACTATACTCATGAT+GGG + chr4_2:73552665-73552684 Msa0621490:intron 30.0%
! GCTACATCACAAAATTTTAG+GGG - chr4_2:73552716-73552735 None:intergenic 30.0%
! GGCTACATCACAAAATTTTA+GGG - chr4_2:73552717-73552736 None:intergenic 30.0%
! TGGCTACATCACAAAATTTT+AGG - chr4_2:73552718-73552737 None:intergenic 30.0%
AGATATAATTCATACAGGGT+TGG - chr4_2:73552760-73552779 None:intergenic 30.0%
!! ATTCAGGTTTTTGCTTCATT+TGG + chr4_2:73552915-73552934 Msa0621490:intron 30.0%
TTTACAGAAGTGATGTAGAA+TGG - chr4_2:73552993-73553012 None:intergenic 30.0%
TGGCAGTTTATCATTAAATG+CGG + chr4_2:73553047-73553066 Msa0621490:intron 30.0%
TCTTTGACCAATTTGAAAAC+CGG + chr4_2:73553139-73553158 Msa0621490:intron 30.0%
TGGCACATAAAAACTAATGA+AGG + chr4_2:73553243-73553262 Msa0621490:intron 30.0%
CATTAAAGATGTTCTCACAT+TGG - chr4_2:73553327-73553346 None:intergenic 30.0%
CAATGTGAGAACATCTTTAA+TGG + chr4_2:73553325-73553344 Msa0621490:intron 30.0%
CCCATTACACTATACATTAA+TGG + chr4_2:73553549-73553568 Msa0621490:intron 30.0%
TATACATTAATGGTATGACG+TGG + chr4_2:73553559-73553578 Msa0621490:intron 30.0%
! GAGAGAAAGTTGATTCATAT+TGG + chr4_2:73553581-73553600 Msa0621490:intron 30.0%
!!! GTTTGTTTTGGAAAGTTGAA+TGG - chr4_2:73553708-73553727 None:intergenic 30.0%
TTTAGTCAAAAAGAAACCCT+AGG + chr4_2:73553765-73553784 Msa0621490:intron 30.0%
!!! ACAATTACCTAGGGTTTTTT+TGG - chr4_2:73553799-73553818 None:intergenic 30.0%
TATGCAGAGAGAAATGAATT+GGG - chr4_2:73553948-73553967 None:intergenic 30.0%
TTATGCAGAGAGAAATGAAT+TGG - chr4_2:73553949-73553968 None:intergenic 30.0%
!!! CCCCTCATTATTTTTTTTGA+AGG + chr4_2:73553975-73553994 Msa0621490:intron 30.0%
! TTGTTCAATTTTACAGATCG+TGG + chr4_2:73554273-73554292 Msa0621490:intron 30.0%
TTGCAATGTTGTTAACTGAA+CGG - chr4_2:73555034-73555053 None:intergenic 30.0%
ATAGTACCTCATACTTCATA+GGG - chr4_2:73555184-73555203 None:intergenic 30.0%
ACACAAATGACATAAAGCTT+TGG - chr4_2:73555269-73555288 None:intergenic 30.0%
TGATAGAACAGTGATTAGAT+TGG + chr4_2:73555376-73555395 Msa0621490:intron 30.0%
ACGCAAATATGTTCTTCATT+AGG - chr4_2:73555466-73555485 None:intergenic 30.0%
GACTCTTATAGAAAACCAAA+AGG + chr4_2:73555555-73555574 Msa0621490:three_prime_UTR 30.0%
GTGTATATTGTTACCAATTG+CGG - chr4_2:73555632-73555651 None:intergenic 30.0%
ACAAAAAGATAATCTGGGAA+GGG - chr4_2:73555755-73555774 None:intergenic 30.0%
TACAAAAAGATAATCTGGGA+AGG - chr4_2:73555756-73555775 None:intergenic 30.0%
TGTACGAGATATTGAATTTG+AGG - chr4_2:73555812-73555831 None:intergenic 30.0%
CAATATCTCGTACATTAAAG+AGG + chr4_2:73555818-73555837 Msa0621490:three_prime_UTR 30.0%
TTATGATCATTACCATAGCT+AGG - chr4_2:73556027-73556046 None:intergenic 30.0%
! TTTTCTGATAACCAAACACT+TGG + chr4_2:73556105-73556124 Msa0621490:three_prime_UTR 30.0%
AGTGAAGGAATCAAAACAAA+AGG - chr4_2:73556193-73556212 None:intergenic 30.0%
! CTTTTTCTATGTATTCCTTG+TGG + chr4_2:73556279-73556298 Msa0621490:three_prime_UTR 30.0%
! TTTGATTTACTACCTGATCT+CGG + chr4_2:73556519-73556538 Msa0621490:three_prime_UTR 30.0%
! TTCAAATTTAGGATTAGGAC+GGG - chr4_2:73556649-73556668 None:intergenic 30.0%
! CCTCTTTCAAATTTAGGATT+AGG - chr4_2:73556654-73556673 None:intergenic 30.0%
CCTAATCCTAAATTTGAAAG+AGG + chr4_2:73556651-73556670 Msa0621490:three_prime_UTR 30.0%
TCCTAAATTTGAAAGAGGTT+TGG + chr4_2:73556656-73556675 Msa0621490:three_prime_UTR 30.0%
TCCAAACCTCTTTCAAATTT+AGG - chr4_2:73556660-73556679 None:intergenic 30.0%
GCAAATAAGTTGCTTGAAAT+GGG + chr4_2:73556738-73556757 Msa0621490:three_prime_UTR 30.0%
TGCAGTGAGAAATAAATTTG+TGG + chr4_2:73556877-73556896 Msa0621490:intron 30.0%
GCAGTGAGAAATAAATTTGT+GGG + chr4_2:73556878-73556897 Msa0621490:intron 30.0%
CACAGAACATTGAGTGAATT+TGG - chr4_2:73548964-73548983 None:intergenic 35.0%
! GCAGTGTTGAAATTGATTGA+AGG - chr4_2:73548991-73549010 None:intergenic 35.0%
!!! GGAACTTGTTTCGTTTTTTC+TGG + chr4_2:73549350-73549369 Msa0621490:five_prime_UTR 35.0%
GTATTAAGAAAAAGCCGTCA+CGG + chr4_2:73549461-73549480 Msa0621490:five_prime_UTR 35.0%
! CTCGGCATGATTTCAATTTT+CGG - chr4_2:73549588-73549607 None:intergenic 35.0%
AATTGAAATCATGCCGAGAA+AGG + chr4_2:73549590-73549609 Msa0621490:exon 35.0%
!!! GAGAAGAGTGGTTTTTTTTC+TGG + chr4_2:73549696-73549715 Msa0621490:CDS 35.0%
TTGCATTCTTTGGATTCTCA+AGG + chr4_2:73549851-73549870 Msa0621490:CDS 35.0%
CGTTCTGTTCAATACTCAAT+TGG + chr4_2:73550266-73550285 Msa0621490:intron 35.0%
! AAATTAGCTTATCCAACTGG+TGG - chr4_2:73550600-73550619 None:intergenic 35.0%
! CCAAAATTAGCTTATCCAAC+TGG - chr4_2:73550603-73550622 None:intergenic 35.0%
! CCAGTTGGATAAGCTAATTT+TGG + chr4_2:73550600-73550619 Msa0621490:intron 35.0%
!! GAATTTTTGAAAGGCTTGGT+CGG + chr4_2:73550642-73550661 Msa0621490:CDS 35.0%
! TTCTTTAGGTGTTATGGCTT+GGG + chr4_2:73550746-73550765 Msa0621490:CDS 35.0%
!! GTAAAACTATGTGGACTAGT+GGG + chr4_2:73550768-73550787 Msa0621490:CDS 35.0%
!! AATGGCAAGTGCTATTTCAT+TGG + chr4_2:73550815-73550834 Msa0621490:CDS 35.0%
!!! AAGAATTGCTTTTCAGGTCA+TGG + chr4_2:73550841-73550860 Msa0621490:CDS 35.0%
GTCATGGAATCATAATTCCA+GGG + chr4_2:73550857-73550876 Msa0621490:CDS 35.0%
! TAGCTCGTATTTTCTTGGAT+TGG + chr4_2:73551167-73551186 Msa0621490:intron 35.0%
! ACAATGAAAGTTGGTCTAGT+TGG + chr4_2:73551193-73551212 Msa0621490:intron 35.0%
TGAGGATTCCACTCATATAA+GGG + chr4_2:73551216-73551235 Msa0621490:intron 35.0%
CAATACATGGAACACTAGTT+TGG - chr4_2:73551338-73551357 None:intergenic 35.0%
CTCACTACAACTTCAATACA+TGG - chr4_2:73551351-73551370 None:intergenic 35.0%
!! ACTAAGAAGAATCGGTTTTC+AGG - chr4_2:73551465-73551484 None:intergenic 35.0%
!! TTCTTGTTGTGCTACGTTTT+GGG - chr4_2:73551567-73551586 None:intergenic 35.0%
!! TTTCTTGTTGTGCTACGTTT+TGG - chr4_2:73551568-73551587 None:intergenic 35.0%
TGCTATTGAGTGTTAATTGC+TGG - chr4_2:73551688-73551707 None:intergenic 35.0%
!! GTTTGCTACTTTAGATTTGG+TGG - chr4_2:73552222-73552241 None:intergenic 35.0%
!! GCTTGAGACTACTTTAGTTT+TGG - chr4_2:73552271-73552290 None:intergenic 35.0%
GGTTTGAGTGACTTGAAAAA+TGG - chr4_2:73552519-73552538 None:intergenic 35.0%
TTCTCTTAGGATCTCTATGT+AGG - chr4_2:73552540-73552559 None:intergenic 35.0%
TTCTCTCTCTTGATTCTCTT+AGG - chr4_2:73552553-73552572 None:intergenic 35.0%
CTTGGATCAAAAAACACCTT+GGG - chr4_2:73552609-73552628 None:intergenic 35.0%
AATTGACAAGAAAGTTGGCT+TGG - chr4_2:73552627-73552646 None:intergenic 35.0%
CTTAACCACTATACTCATGA+TGG + chr4_2:73552664-73552683 Msa0621490:intron 35.0%
TGAACTGAAACGAACTAAGA+GGG - chr4_2:73552800-73552819 None:intergenic 35.0%
ATGAACTGAAACGAACTAAG+AGG - chr4_2:73552801-73552820 None:intergenic 35.0%
AAAAACCTGAATTGAGGAGA+GGG - chr4_2:73552907-73552926 None:intergenic 35.0%
TGAAGCAAAAACCTGAATTG+AGG - chr4_2:73552913-73552932 None:intergenic 35.0%
GGCAGTTTATCATTAAATGC+GGG + chr4_2:73553048-73553067 Msa0621490:intron 35.0%
ATTAAATGCGGGCATAATAC+CGG + chr4_2:73553059-73553078 Msa0621490:intron 35.0%
TAACTGCTCTTTAAGCCTTA+AGG + chr4_2:73553367-73553386 Msa0621490:intron 35.0%
!!! GTTTTGGAAAGTTGAATGGA+TGG - chr4_2:73553704-73553723 None:intergenic 35.0%
!!! TATTTTTTCAATCCTAGGGG+AGG - chr4_2:73553730-73553749 None:intergenic 35.0%
ATGCAGAGAGAAATGAATTG+GGG - chr4_2:73553947-73553966 None:intergenic 35.0%
ACGATGATAAACCCTAATCA+AGG - chr4_2:73554299-73554318 None:intergenic 35.0%
TGCTGGAGTACAATTTGTAA+GGG + chr4_2:73554324-73554343 Msa0621490:CDS 35.0%
TAATCAAAGATTGTGCGATC+TGG + chr4_2:73554553-73554572 Msa0621490:intron 35.0%
TATTAGATCATTGCAACGAC+CGG + chr4_2:73554704-73554723 Msa0621490:intron 35.0%
!! ACTGTATTTGTTTCTGCAGT+TGG + chr4_2:73554754-73554773 Msa0621490:intron 35.0%
CTGTTAAATACCAGCTATAG+AGG + chr4_2:73554868-73554887 Msa0621490:intron 35.0%
TGTTATAATGCCTCTATAGC+TGG - chr4_2:73554881-73554900 None:intergenic 35.0%
ATACCAGTTCTATAGTGTTG+TGG + chr4_2:73554975-73554994 Msa0621490:intron 35.0%
TAAAAGCCCTATGAAGTATG+AGG + chr4_2:73555175-73555194 Msa0621490:intron 35.0%
GATAGTACCTCATACTTCAT+AGG - chr4_2:73555185-73555204 None:intergenic 35.0%
! ACAGTTCATCTGTAATGGAA+GGG + chr4_2:73555533-73555552 Msa0621490:three_prime_UTR 35.0%
TCAAGCATATATCGAAGACA+AGG + chr4_2:73555588-73555607 Msa0621490:three_prime_UTR 35.0%
CAAGCATATATCGAAGACAA+GGG + chr4_2:73555589-73555608 Msa0621490:three_prime_UTR 35.0%
! AAAGCAATCACTCCATTTTG+TGG + chr4_2:73555691-73555710 Msa0621490:three_prime_UTR 35.0%
! GAGATATTGAATTTGAGGTC+TGG - chr4_2:73555807-73555826 None:intergenic 35.0%
AAAGCTGAACAAAATTGCAG+TGG + chr4_2:73555841-73555860 Msa0621490:three_prime_UTR 35.0%
TTCTTCGCAAAGAACATCTT+TGG + chr4_2:73555958-73555977 Msa0621490:three_prime_UTR 35.0%
TTTCATGACTTTCCATCCAA+TGG - chr4_2:73556134-73556153 None:intergenic 35.0%
TTGGATGGAAAGTCATGAAA+AGG + chr4_2:73556134-73556153 Msa0621490:three_prime_UTR 35.0%
ATGTTCAGAAGAGACACTAT+GGG + chr4_2:73556235-73556254 Msa0621490:three_prime_UTR 35.0%
!! ATTCCTTGTGGTTGTCATTT+TGG + chr4_2:73556291-73556310 Msa0621490:three_prime_UTR 35.0%
TTTCCAAAATGACAACCACA+AGG - chr4_2:73556297-73556316 None:intergenic 35.0%
!! CATTTTAGGAGAATCATCAC+CGG - chr4_2:73556406-73556425 None:intergenic 35.0%
TTCTCCTAAAATGATTGAGC+AGG + chr4_2:73556413-73556432 Msa0621490:three_prime_UTR 35.0%
TCTCCTAAAATGATTGAGCA+GGG + chr4_2:73556414-73556433 Msa0621490:three_prime_UTR 35.0%
! TTTCCCTGCTCAATCATTTT+AGG - chr4_2:73556420-73556439 None:intergenic 35.0%
! GATAATTCTGAGAATCGAAG+TGG + chr4_2:73556459-73556478 Msa0621490:three_prime_UTR 35.0%
TATGCTCAGAGACTAAAATC+TGG + chr4_2:73556615-73556634 Msa0621490:three_prime_UTR 35.0%
!! GTTTGGAAGAAGCATCAAAT+AGG + chr4_2:73556673-73556692 Msa0621490:three_prime_UTR 35.0%
GGCAAATAAGTTGCTTGAAA+TGG + chr4_2:73556737-73556756 Msa0621490:three_prime_UTR 35.0%
TCTTCCAATTTATCTGCATG+AGG - chr4_2:73556780-73556799 None:intergenic 35.0%
GTTTCGTTTATCTACCAGAA+AGG + chr4_2:73556830-73556849 Msa0621490:intron 35.0%
ACTTTCAAATCACCACCTTA+AGG + chr4_2:73556972-73556991 Msa0621490:three_prime_UTR 35.0%
! TTGCAGATTTTTCCTTAAGG+TGG - chr4_2:73556987-73557006 None:intergenic 35.0%
CTTATCTTGGTCCAACTTAT+TGG - chr4_2:73557028-73557047 None:intergenic 35.0%
TGATCTACTACACATATCAC+AGG - chr4_2:73557147-73557166 None:intergenic 35.0%
TGTAAATCTTCCTAAGCCTT+AGG + chr4_2:73557203-73557222 Msa0621490:three_prime_UTR 35.0%
ACATAGGTAAACATCTCCTA+AGG - chr4_2:73557222-73557241 None:intergenic 35.0%
CAATCAATTTCAACACTGCG+AGG + chr4_2:73548992-73549011 Msa0621490:five_prime_UTR 40.0%
ATTTCAACACTGCGAGGTTT+CGG + chr4_2:73548998-73549017 Msa0621490:five_prime_UTR 40.0%
GCTCACACCACACTATTTAA+TGG + chr4_2:73549037-73549056 Msa0621490:five_prime_UTR 40.0%
! TTCCTTTGTTGACCCTTTTG+TGG + chr4_2:73549186-73549205 Msa0621490:intron 40.0%
TTCCACAAAAGGGTCAACAA+AGG - chr4_2:73549191-73549210 None:intergenic 40.0%
TACCACAGTGATTCAACTTG+TGG + chr4_2:73549250-73549269 Msa0621490:intron 40.0%
ACCACAGTGATTCAACTTGT+GGG + chr4_2:73549251-73549270 Msa0621490:intron 40.0%
ATTCAACTTGTGGGAAAACC+AGG + chr4_2:73549260-73549279 Msa0621490:five_prime_UTR 40.0%
!! GCTGTAGTATTGGTTCAGAA+TGG + chr4_2:73549520-73549539 Msa0621490:five_prime_UTR 40.0%
GACTCAATAACCACCTTTCT+CGG - chr4_2:73549606-73549625 None:intergenic 40.0%
GGTGGTTATTGAGTCTATGA+AGG + chr4_2:73549611-73549630 Msa0621490:CDS 40.0%
!! TGTCAAGTTGAGTGTGCATA+GGG + chr4_2:73549662-73549681 Msa0621490:CDS 40.0%
GATGTTCTGATAGAGAAGAG+TGG + chr4_2:73549684-73549703 Msa0621490:CDS 40.0%
TGGAAAGATTTCGGAACAGT+CGG + chr4_2:73549716-73549735 Msa0621490:CDS 40.0%
TCTTCAAATCAGTGATTGCG+AGG + chr4_2:73549749-73549768 Msa0621490:CDS 40.0%
ATGTAGTTGCTAGTGGCATT+TGG - chr4_2:73549935-73549954 None:intergenic 40.0%
CAAGAAATGCATTCACAGCA+TGG - chr4_2:73550692-73550711 None:intergenic 40.0%
CATGCTGTGAATGCATTTCT+TGG + chr4_2:73550690-73550709 Msa0621490:CDS 40.0%
TTGGTTGTGCAAGTTTCTCT+TGG + chr4_2:73550709-73550728 Msa0621490:CDS 40.0%
CCTAAAGAAGGTGGAATATG+AGG - chr4_2:73550735-73550754 None:intergenic 40.0%
CCTCATATTCCACCTTCTTT+AGG + chr4_2:73550732-73550751 Msa0621490:CDS 40.0%
TCCACCTTCTTTAGGTGTTA+TGG + chr4_2:73550740-73550759 Msa0621490:CDS 40.0%
CAAGCCATAACACCTAAAGA+AGG - chr4_2:73550747-73550766 None:intergenic 40.0%
! CTTCTTTAGGTGTTATGGCT+TGG + chr4_2:73550745-73550764 Msa0621490:CDS 40.0%
! ATGGCTTGGGTAAAACTATG+TGG + chr4_2:73550759-73550778 Msa0621490:CDS 40.0%
!! GGTAAAACTATGTGGACTAG+TGG + chr4_2:73550767-73550786 Msa0621490:CDS 40.0%
!! TGGTGGAAGAATTGCTTTTC+AGG + chr4_2:73550835-73550854 Msa0621490:CDS 40.0%
GGTCATGGAATCATAATTCC+AGG + chr4_2:73550856-73550875 Msa0621490:CDS 40.0%
! TGGCATTTTCTTTCTTGCAG+AGG + chr4_2:73550881-73550900 Msa0621490:CDS 40.0%
ACGGAACAAACAAACGTACA+AGG - chr4_2:73551075-73551094 None:intergenic 40.0%
! TGTCGTAGCTCGTATTTTCT+TGG + chr4_2:73551162-73551181 Msa0621490:intron 40.0%
GTGAGGATTCCACTCATATA+AGG + chr4_2:73551215-73551234 Msa0621490:intron 40.0%
!! TATAAGCGCTTTTTGCGGTT+TGG + chr4_2:73551272-73551291 Msa0621490:intron 40.0%
!! ATAAGCGCTTTTTGCGGTTT+GGG + chr4_2:73551273-73551292 Msa0621490:intron 40.0%
GCATAGCCAATCAATTTCTG+AGG - chr4_2:73551514-73551533 None:intergenic 40.0%
! GGGGTTCAGAATTCGATTTT+AGG - chr4_2:73551536-73551555 None:intergenic 40.0%
AGTTAATCCGCAACAACGAA+CGG + chr4_2:73551890-73551909 Msa0621490:intron 40.0%
TAATGAGATCTCACTACCCA+AGG + chr4_2:73552590-73552609 Msa0621490:intron 40.0%
GCTTGGATCAAAAAACACCT+TGG - chr4_2:73552610-73552629 None:intergenic 40.0%
CATGACCAAGATTTGAAAGG+TGG - chr4_2:73552852-73552871 None:intergenic 40.0%
CACCTTTCAAATCTTGGTCA+TGG + chr4_2:73552850-73552869 Msa0621490:intron 40.0%
CACCATGACCAAGATTTGAA+AGG - chr4_2:73552855-73552874 None:intergenic 40.0%
CTTTCAAATCTTGGTCATGG+TGG + chr4_2:73552853-73552872 Msa0621490:intron 40.0%
CAAAAACCTGAATTGAGGAG+AGG - chr4_2:73552908-73552927 None:intergenic 40.0%
CCAAAACCAACTGAAAAGTG+TGG - chr4_2:73553226-73553245 None:intergenic 40.0%
!! CCACACTTTTCAGTTGGTTT+TGG + chr4_2:73553223-73553242 Msa0621490:intron 40.0%
! AAGGAATTGACTCACCCATA+AGG + chr4_2:73553280-73553299 Msa0621490:intron 40.0%
AGTTGAACCCACTACCTTAT+GGG - chr4_2:73553297-73553316 None:intergenic 40.0%
! TTCAAGTGAGTTGAACTCCT+AGG - chr4_2:73553414-73553433 None:intergenic 40.0%
GTTTATCATCGTTCTACTGC+TGG + chr4_2:73554307-73554326 Msa0621490:CDS 40.0%
CTGCTGGAGTACAATTTGTA+AGG + chr4_2:73554323-73554342 Msa0621490:CDS 40.0%
ATTAGATCATTGCAACGACC+GGG + chr4_2:73554705-73554724 Msa0621490:intron 40.0%
!! GATTGCTCTGAGACAAATCA+AGG + chr4_2:73555427-73555446 Msa0621490:three_prime_UTR 40.0%
ACAAATCAAGGAGCAGCTTA+CGG + chr4_2:73555439-73555458 Msa0621490:three_prime_UTR 40.0%
CAGTGACAGTTCATCTGTAA+TGG + chr4_2:73555528-73555547 Msa0621490:three_prime_UTR 40.0%
! GACAGTTCATCTGTAATGGA+AGG + chr4_2:73555532-73555551 Msa0621490:three_prime_UTR 40.0%
CATATATCGAAGACAAGGGA+AGG + chr4_2:73555593-73555612 Msa0621490:three_prime_UTR 40.0%
ACACCAAGTCTTTGCAAATC+AGG - chr4_2:73555876-73555895 None:intergenic 40.0%
!! AGACTTGGTGTTTGTACATC+CGG + chr4_2:73555885-73555904 Msa0621490:three_prime_UTR 40.0%
! TTGATCTCCAATGGACTTTC+CGG - chr4_2:73555907-73555926 None:intergenic 40.0%
! TCATCATTGACGATTGACTC+TGG - chr4_2:73555931-73555950 None:intergenic 40.0%
!! TGAGAGTGCTGTTAAGTGTA+AGG + chr4_2:73556068-73556087 Msa0621490:three_prime_UTR 40.0%
CATGTTCAGAAGAGACACTA+TGG + chr4_2:73556234-73556253 Msa0621490:three_prime_UTR 40.0%
TCGAAAGCTTAAATTCGGCA+GGG - chr4_2:73556356-73556375 None:intergenic 40.0%
ATCGAAAGCTTAAATTCGGC+AGG - chr4_2:73556357-73556376 None:intergenic 40.0%
GAGCAACTAACATTGTCTAC+CGG + chr4_2:73556384-73556403 Msa0621490:three_prime_UTR 40.0%
!! AAGAAGCATCAAATAGGACC+AGG + chr4_2:73556679-73556698 Msa0621490:three_prime_UTR 40.0%
ATCAAATAGGACCAGGAGAA+GGG + chr4_2:73556686-73556705 Msa0621490:three_prime_UTR 40.0%
GGAAGAATCTCAATGCTTAG+AGG + chr4_2:73556794-73556813 Msa0621490:three_prime_UTR 40.0%
AATTTGTGGGAATTGGCATC+AGG + chr4_2:73556891-73556910 Msa0621490:three_prime_UTR 40.0%
GATGAGTTCATTTGTGCAAG+AGG + chr4_2:73556913-73556932 Msa0621490:three_prime_UTR 40.0%
AGATCCTGCAACCAATAAGT+TGG + chr4_2:73557014-73557033 Msa0621490:three_prime_UTR 40.0%
CGACAGAGTGAAACTTATCT+TGG - chr4_2:73557041-73557060 None:intergenic 40.0%
GTAAACATCTCCTAAGGCTT+AGG - chr4_2:73557216-73557235 None:intergenic 40.0%
!! AAGCATCGACTTTGTCACAT+AGG - chr4_2:73557238-73557257 None:intergenic 40.0%
GTGACAAAGTCGATGCTTTA+TGG + chr4_2:73557240-73557259 Msa0621490:three_prime_UTR 40.0%
AGGTTTCGGAAGAGCTATAG+AGG + chr4_2:73549012-73549031 Msa0621490:five_prime_UTR 45.0%
! TCCCACAAGTTGAATCACTG+TGG - chr4_2:73549255-73549274 None:intergenic 45.0%
AACCAGGTTCAGCGAAAGAA+AGG + chr4_2:73549276-73549295 Msa0621490:five_prime_UTR 45.0%
TGGCGATGAAGGATAGCTAT+CGG - chr4_2:73549419-73549438 None:intergenic 45.0%
! ATTTTCAGTCGTGCCTGTAG+TGG - chr4_2:73549439-73549458 None:intergenic 45.0%
GTGCAAGTGAGTGAAAGAAG+AGG + chr4_2:73549483-73549502 Msa0621490:five_prime_UTR 45.0%
GATGATCGACGCTGTAGTAT+TGG + chr4_2:73549510-73549529 Msa0621490:five_prime_UTR 45.0%
TGAAATCATGCCGAGAAAGG+TGG + chr4_2:73549593-73549612 Msa0621490:exon 45.0%
!! CTGTCAAGTTGAGTGTGCAT+AGG + chr4_2:73549661-73549680 Msa0621490:CDS 45.0%
!! AGTGTGTTGTCAAGTTGGCA+TGG + chr4_2:73550511-73550530 Msa0621490:intron 45.0%
GTGCATATTTCTCCACCAGT+TGG + chr4_2:73550585-73550604 Msa0621490:intron 45.0%
!! TTTTTGAAAGGCTTGGTCGG+TGG + chr4_2:73550645-73550664 Msa0621490:CDS 45.0%
GCCATAACACCTAAAGAAGG+TGG - chr4_2:73550744-73550763 None:intergenic 45.0%
GTGGGTCTGCTAATTGTTCA+AGG + chr4_2:73550786-73550805 Msa0621490:CDS 45.0%
!! GGCAAGTGCTATTTCATTGG+TGG + chr4_2:73550818-73550837 Msa0621490:CDS 45.0%
TGGAATCATAATTCCAGGGC+TGG + chr4_2:73550861-73550880 Msa0621490:CDS 45.0%
AAGAAAGAAAATGCCAGCCC+TGG - chr4_2:73550877-73550896 None:intergenic 45.0%
GATTGGCGCACAATGAAAGT+TGG + chr4_2:73551184-73551203 Msa0621490:intron 45.0%
! GAAAGTTGGTCTAGTTGGTG+AGG + chr4_2:73551198-73551217 Msa0621490:intron 45.0%
CAGCAAGACCCTTATATGAG+TGG - chr4_2:73551227-73551246 None:intergenic 45.0%
CACTCATATAAGGGTCTTGC+TGG + chr4_2:73551225-73551244 Msa0621490:intron 45.0%
!! TAAGCGCTTTTTGCGGTTTG+GGG + chr4_2:73551274-73551293 Msa0621490:intron 45.0%
!! CTCTAGAACTCACGTATGCA+GGG - chr4_2:73551304-73551323 None:intergenic 45.0%
!! TCTCTAGAACTCACGTATGC+AGG - chr4_2:73551305-73551324 None:intergenic 45.0%
!!! TACGTTTTGGGAGGTTTCTG+GGG - chr4_2:73551555-73551574 None:intergenic 45.0%
!!! CTACGTTTTGGGAGGTTTCT+GGG - chr4_2:73551556-73551575 None:intergenic 45.0%
!! TTGTTGTGCTACGTTTTGGG+AGG - chr4_2:73551564-73551583 None:intergenic 45.0%
! CGTTGTTGCGGATTAACTCA+GGG - chr4_2:73551888-73551907 None:intergenic 45.0%
! TCGTTGTTGCGGATTAACTC+AGG - chr4_2:73551889-73551908 None:intergenic 45.0%
TCCAATTCCGTTCGTTGTTG+CGG - chr4_2:73551900-73551919 None:intergenic 45.0%
GGGTAGTGAGATCTCATTAG+AGG - chr4_2:73552589-73552608 None:intergenic 45.0%
TTGCGCCACCTTTCAAATCT+TGG + chr4_2:73552844-73552863 Msa0621490:intron 45.0%
ATACTCCCTCTCCTCAATTC+AGG + chr4_2:73552899-73552918 Msa0621490:intron 45.0%
!!! GGTAGCACCGGTTTTCAAAT+TGG - chr4_2:73553149-73553168 None:intergenic 45.0%
TCTTGAGTCCTGAGTTGTGT+TGG - chr4_2:73553170-73553189 None:intergenic 45.0%
! GACACACCACACTTTTCAGT+TGG + chr4_2:73553217-73553236 Msa0621490:intron 45.0%
! CTAATGAAGGTTGGCTCAGT+TGG + chr4_2:73553256-73553275 Msa0621490:intron 45.0%
TTGACTCACCCATAAGGTAG+TGG + chr4_2:73553286-73553305 Msa0621490:intron 45.0%
TGACTCACCCATAAGGTAGT+GGG + chr4_2:73553287-73553306 Msa0621490:intron 45.0%
GAGTTGAACCCACTACCTTA+TGG - chr4_2:73553298-73553317 None:intergenic 45.0%
TTCCAAAACAAACCTCCCCT+AGG + chr4_2:73553715-73553734 Msa0621490:intron 45.0%
!! ATCCTAGGGGAGGTTTGTTT+TGG - chr4_2:73553720-73553739 None:intergenic 45.0%
AATGAATTGGGGACCATGGA+AGG - chr4_2:73553936-73553955 None:intergenic 45.0%
GAGAAATGAATTGGGGACCA+TGG - chr4_2:73553940-73553959 None:intergenic 45.0%
! TACAGATCGTGGCCTTGATT+AGG + chr4_2:73554284-73554303 Msa0621490:intron 45.0%
! ACAGATCGTGGCCTTGATTA+GGG + chr4_2:73554285-73554304 Msa0621490:intron 45.0%
GATGACTAAAACACTGGGCT+GGG - chr4_2:73554634-73554653 None:intergenic 45.0%
TGATGACTAAAACACTGGGC+TGG - chr4_2:73554635-73554654 None:intergenic 45.0%
ACGCCACAACACTATAGAAC+TGG - chr4_2:73554981-73555000 None:intergenic 45.0%
TTAGATTGGAGCAGTCAGCA+TGG + chr4_2:73555390-73555409 Msa0621490:three_prime_UTR 45.0%
! CTTGACATTGTCGACCCTTT+TGG - chr4_2:73555573-73555592 None:intergenic 45.0%
! GCAATCACTCCATTTTGTGG+AGG + chr4_2:73555694-73555713 Msa0621490:three_prime_UTR 45.0%
GCAGTTGTACCTCCACAAAA+TGG - chr4_2:73555706-73555725 None:intergenic 45.0%
ACATCTGCACAAAGCTGAGA+TGG + chr4_2:73555780-73555799 Msa0621490:three_prime_UTR 45.0%
CATCTGCACAAAGCTGAGAT+GGG + chr4_2:73555781-73555800 Msa0621490:three_prime_UTR 45.0%
GTCTTTGCAAATCAGGCTCT+GGG - chr4_2:73555869-73555888 None:intergenic 45.0%
AGTCTTTGCAAATCAGGCTC+TGG - chr4_2:73555870-73555889 None:intergenic 45.0%
! GAGCCTGATTTGCAAAGACT+TGG + chr4_2:73555870-73555889 Msa0621490:three_prime_UTR 45.0%
TGTACATCCGGAAAGTCCAT+TGG + chr4_2:73555897-73555916 Msa0621490:three_prime_UTR 45.0%
GACTCTGGATTGATCTCCAA+TGG - chr4_2:73555916-73555935 None:intergenic 45.0%
AGCTTTCCGGTAATGATCAG+TGG + chr4_2:73555992-73556011 Msa0621490:three_prime_UTR 45.0%
ACCAAACACTTGGCAACCAT+TGG + chr4_2:73556115-73556134 Msa0621490:three_prime_UTR 45.0%
TCCAATGGTTGCCAAGTGTT+TGG - chr4_2:73556119-73556138 None:intergenic 45.0%
AACACTTGGCAACCATTGGA+TGG + chr4_2:73556119-73556138 Msa0621490:three_prime_UTR 45.0%
! GTCATGAAAAGGAAGCACAG+TGG + chr4_2:73556145-73556164 Msa0621490:three_prime_UTR 45.0%
AAGAGACACTATGGGCAGTT+TGG + chr4_2:73556243-73556262 Msa0621490:three_prime_UTR 45.0%
CCATATGAGCAGCTTGATGA+TGG - chr4_2:73556548-73556567 None:intergenic 45.0%
CCATCATCAAGCTGCTCATA+TGG + chr4_2:73556545-73556564 Msa0621490:three_prime_UTR 45.0%
CATCAAATAGGACCAGGAGA+AGG + chr4_2:73556685-73556704 Msa0621490:three_prime_UTR 45.0%
!! ATTAGCTTTAGCCCTTCTCC+TGG - chr4_2:73556700-73556719 None:intergenic 45.0%
TTTATCTGCATGAGGCTGGA+TGG - chr4_2:73556772-73556791 None:intergenic 45.0%
CCAATTTATCTGCATGAGGC+TGG - chr4_2:73556776-73556795 None:intergenic 45.0%
CCAGCCTCATGCAGATAAAT+TGG + chr4_2:73556773-73556792 Msa0621490:three_prime_UTR 45.0%
ACCAGAAAGGCTCTATCTGA+AGG + chr4_2:73556843-73556862 Msa0621490:intron 45.0%
ACAAAACCCAGTCACTCACT+TGG + chr4_2:73556945-73556964 Msa0621490:three_prime_UTR 45.0%
! TGGTCCAACTTATTGGTTGC+AGG - chr4_2:73557021-73557040 None:intergenic 45.0%
GCGACGACCCTAATCTTATA+TGG - chr4_2:73557074-73557093 None:intergenic 45.0%
AAGATTAGGGTCGTCGCAAA+AGG + chr4_2:73557077-73557096 Msa0621490:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTAGA+GGG - chr4_2:73548900-73548919 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTAG+AGG - chr4_2:73548901-73548920 None:intergenic 5.0%
!! AAAAAAAAAAAAATTGAAAT+AGG + chr4_2:73553457-73553476 Msa0621490:intron 5.0%
!!! AATTTTTTTTATATAAAGAT+TGG + chr4_2:73554669-73554688 Msa0621490:intron 5.0%
CTCCTTTCTTTCGCTGAACC+TGG - chr4_2:73549281-73549300 None:intergenic 50.0%
CTATCCTTCATCGCCACTAC+AGG + chr4_2:73549423-73549442 Msa0621490:five_prime_UTR 50.0%
TTCACTCACTTGCACCGTGA+CGG - chr4_2:73549478-73549497 None:intergenic 50.0%
!!! GCTACGTTTTGGGAGGTTTC+TGG - chr4_2:73551557-73551576 None:intergenic 50.0%
TCCGCAACAACGAACGGAAT+TGG + chr4_2:73551896-73551915 Msa0621490:intron 50.0%
ATCCAGTGTGACCTGTGTCT+TGG + chr4_2:73552395-73552414 Msa0621490:intron 50.0%
TCCAGTGTGACCTGTGTCTT+GGG + chr4_2:73552396-73552415 Msa0621490:intron 50.0%
CAGGCCCATCATGAGTATAG+TGG - chr4_2:73552672-73552691 None:intergenic 50.0%
TGATGTAGCCAAGCCTTGAC+AGG + chr4_2:73552727-73552746 Msa0621490:intron 50.0%
!! CTGAGTTGTGTTGGTAGCAC+CGG - chr4_2:73553161-73553180 None:intergenic 50.0%
! GAAGGTTGGCTCAGTTGGTA+AGG + chr4_2:73553261-73553280 Msa0621490:intron 50.0%
CAGGGTCAAGACAGTCCTTA+AGG - chr4_2:73553385-73553404 None:intergenic 50.0%
CTTAAGGACTGTCTTGACCC+TGG + chr4_2:73553383-73553402 Msa0621490:intron 50.0%
TGAACTCCTAGGACTCACCA+GGG - chr4_2:73553403-73553422 None:intergenic 50.0%
TTGAACTCCTAGGACTCACC+AGG - chr4_2:73553404-73553423 None:intergenic 50.0%
!! AATGAAAAGTGCTGGCGCTG+CGG - chr4_2:73553854-73553873 None:intergenic 50.0%
AGGAGTCAAGTGGAGTGGAT+TGG - chr4_2:73553916-73553935 None:intergenic 50.0%
ATGGAAGGAGTCAAGTGGAG+TGG - chr4_2:73553921-73553940 None:intergenic 50.0%
ACTCCACTTGACTCCTTCCA+TGG + chr4_2:73553920-73553939 Msa0621490:intron 50.0%
TCCGGTAATGATCAGTGGAC+AGG + chr4_2:73555997-73556016 Msa0621490:three_prime_UTR 50.0%
GCCTGTCCACTGATCATTAC+CGG - chr4_2:73556001-73556020 None:intergenic 50.0%
GAAGCACAGTGGTTGTTCAG+AGG + chr4_2:73556156-73556175 Msa0621490:three_prime_UTR 50.0%
CTGAGAATCGAAGTGGTTCG+CGG + chr4_2:73556466-73556485 Msa0621490:three_prime_UTR 50.0%
GTTCGCGGAAGTTTAGTTGC+AGG + chr4_2:73556481-73556500 Msa0621490:three_prime_UTR 50.0%
GCCTTCAGATAGAGCCTTTC+TGG - chr4_2:73556847-73556866 None:intergenic 50.0%
GTGATGCCAAGTGAGTGACT+GGG - chr4_2:73556954-73556973 None:intergenic 50.0%
AGTGATGCCAAGTGAGTGAC+TGG - chr4_2:73556955-73556974 None:intergenic 50.0%
TCCCAAGACACAGGTCACAC+TGG - chr4_2:73552400-73552419 None:intergenic 55.0%
AGCCAAGCCTTGACAGGCTT+TGG + chr4_2:73552733-73552752 Msa0621490:intron 55.0%
GCCAAGCCTTGACAGGCTTT+GGG + chr4_2:73552734-73552753 Msa0621490:intron 55.0%
!! CGGTGCTACCAACACAACTC+AGG + chr4_2:73553159-73553178 Msa0621490:intron 55.0%
TCTTGACCCTGGTGAGTCCT+AGG + chr4_2:73553394-73553413 Msa0621490:intron 55.0%
GGACCATGGAAGGAGTCAAG+TGG - chr4_2:73553926-73553945 None:intergenic 55.0%
CAGTGCGTGAGAACCGCAAT+TGG + chr4_2:73555616-73555635 Msa0621490:three_prime_UTR 55.0%
! TGTGGAGGTACAACTGCTGC+TGG + chr4_2:73555709-73555728 Msa0621490:three_prime_UTR 55.0%
GGCGAAACGCTCAAGCTTTC+CGG + chr4_2:73555979-73555998 Msa0621490:three_prime_UTR 55.0%
TGGACAGGCTCTCCTAGCTA+TGG + chr4_2:73556012-73556031 Msa0621490:three_prime_UTR 55.0%
!! TGATGATGGCGACCGAGATC+AGG - chr4_2:73556534-73556553 None:intergenic 55.0%
AGGGTCGTCGCAAAAGGCTA+TGG + chr4_2:73557083-73557102 Msa0621490:three_prime_UTR 55.0%
CGTGCCTGTAGTGGCGATGA+AGG - chr4_2:73549430-73549449 None:intergenic 60.0%
GCTGCTCTCTCCCAAGACAC+AGG - chr4_2:73552409-73552428 None:intergenic 60.0%
GCCCAAAGCCTGTCAAGGCT+TGG - chr4_2:73552738-73552757 None:intergenic 60.0%
! GGTTGGCCCAAAGCCTGTCA+AGG - chr4_2:73552743-73552762 None:intergenic 60.0%
ACTCTTTGCCAAGCGCCTGC+TGG - chr4_2:73556583-73556602 None:intergenic 60.0%
AGCAGGCGCTTGGCAAAGAG+TGG + chr4_2:73556582-73556601 Msa0621490:three_prime_UTR 60.0%
TGGAGCGCGATCTAGCCAGC+AGG + chr4_2:73556565-73556584 Msa0621490:three_prime_UTR 65.0%
CGATCTAGCCAGCAGGCGCT+TGG + chr4_2:73556572-73556591 Msa0621490:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 73548840 73557284 73548840 ID=Msa0621490;Name=Msa0621490
chr4_2 mRNA 73548840 73557284 73548840 ID=Msa0621490-mRNA-1;Parent=Msa0621490;Name=Msa0621490-mRNA-1;_AED=0.24;_eAED=0.24;_QI=561|1|1|1|0.4|0.16|6|1866|209
chr4_2 exon 73548840 73549058 73548840 ID=Msa0621490-mRNA-1:exon:22095;Parent=Msa0621490-mRNA-1
chr4_2 exon 73549258 73549872 73549258 ID=Msa0621490-mRNA-1:exon:22096;Parent=Msa0621490-mRNA-1
chr4_2 exon 73550636 73550902 73550636 ID=Msa0621490-mRNA-1:exon:22097;Parent=Msa0621490-mRNA-1
chr4_2 exon 73554289 73554380 73554289 ID=Msa0621490-mRNA-1:exon:22098;Parent=Msa0621490-mRNA-1
chr4_2 exon 73555387 73556847 73555387 ID=Msa0621490-mRNA-1:exon:22099;Parent=Msa0621490-mRNA-1
chr4_2 exon 73556882 73557284 73556882 ID=Msa0621490-mRNA-1:exon:22100;Parent=Msa0621490-mRNA-1
chr4_2 five_prime_UTR 73548840 73549058 73548840 ID=Msa0621490-mRNA-1:five_prime_utr;Parent=Msa0621490-mRNA-1
chr4_2 five_prime_UTR 73549258 73549599 73549258 ID=Msa0621490-mRNA-1:five_prime_utr;Parent=Msa0621490-mRNA-1
chr4_2 CDS 73549600 73549872 73549600 ID=Msa0621490-mRNA-1:cds;Parent=Msa0621490-mRNA-1
chr4_2 CDS 73550636 73550902 73550636 ID=Msa0621490-mRNA-1:cds;Parent=Msa0621490-mRNA-1
chr4_2 CDS 73554289 73554378 73554289 ID=Msa0621490-mRNA-1:cds;Parent=Msa0621490-mRNA-1
chr4_2 three_prime_UTR 73554379 73554380 73554379 ID=Msa0621490-mRNA-1:three_prime_utr;Parent=Msa0621490-mRNA-1
chr4_2 three_prime_UTR 73555387 73556847 73555387 ID=Msa0621490-mRNA-1:three_prime_utr;Parent=Msa0621490-mRNA-1
chr4_2 three_prime_UTR 73556882 73557284 73556882 ID=Msa0621490-mRNA-1:three_prime_utr;Parent=Msa0621490-mRNA-1
Gene Sequence

>Msa0621490

ATGCCGAGAAAGGTGGTTATTGAGTCTATGAAGGTTGTTTTATTAGGGAAAGAAGGATTTTCTGTCAAGTTGAGTGTGCATAGGGATGTTCTGATAGAGAAGAGTGGTTTTTTTTCTGGAAAGATTTCGGAACAGTCGGATTTGTCTTGTCTTCAAATCAGTGATTGCGAGGATGTTGAAATATATGTTGAAGCTGTTGGTTTTATGTATTGCAAAGAAATGAAACTGCGGCTTATGAAACAGAATGTTTCTTGCATTCTTTGGATTCTCAAGTTAATTGAATTTTTGAAAGGCTTGGTCGGTGGAGTCATGTTCATTTTTTCAATCCATGCTGTGAATGCATTTCTTGGTTGTGCAAGTTTCTCTTGGCCTCATATTCCACCTTCTTTAGGTGTTATGGCTTGGGTAAAACTATGTGGACTAGTGGGTCTGCTAATTGTTCAAGGAACTGTAATGGCAAGTGCTATTTCATTGGTGGAAGAATTGCTTTTCAGGTCATGGAATCATAATTCCAGGGCTGGCATTTTCTTTCTTGCAGAGATCGTGGCCTTGATTAGGGTTTATCATCGTTCTACTGCTGGAGTACAATTTGTAAGGGTTTTGCGCTGTTTTGAATGTGCAAAAGATTAA
Protein sequence

>Msa0621490

MPRKVVIESMKVVLLGKEGFSVKLSVHRDVLIEKSGFFSGKISEQSDLSCLQISDCEDVEIYVEAVGFMYCKEMKLRLMKQNVSCILWILKLIEFLKGLVGGVMFIFSIHAVNAFLGCASFSWPHIPPSLGVMAWVKLCGLVGLLIVQGTVMASAISLVEELLFRSWNHNSRAGIFFLAEIVALIRVYHRSTAGVQFVRVLRCFECAKD*