Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878360 | XP_013451533.1 | 94.402 | 518 | 25 | 2 | 1 | 516 | 1 | 516 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878360 | sp|Q9ASS7|CAAT2_ARATH | 64.122 | 524 | 166 | 7 | 1 | 510 | 1 | 516 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878360 | A0A072U854 | 94.402 | 518 | 25 | 2 | 1 | 516 | 1 | 516 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659790 | Msa0878360 | 0.810001 | 1.432130e-50 | -8.615850e-47 |
| Msa0743530 | Msa0878360 | 0.807125 | 5.887830e-50 | -8.615850e-47 |
| Msa0822170 | Msa0878360 | 0.805493 | 1.299671e-49 | -8.615850e-47 |
| Msa0442310 | Msa0878360 | 0.804968 | 1.673991e-49 | -8.615850e-47 |
| Msa0869010 | Msa0878360 | 0.803403 | 3.544641e-49 | -8.615850e-47 |
| Msa0870650 | Msa0878360 | 0.823387 | 1.423605e-53 | -8.615850e-47 |
| Msa0878360 | Msa0973320 | 0.829132 | 6.106110e-55 | -8.615850e-47 |
| Msa0878360 | Msa1206650 | 0.806541 | 7.826101e-50 | -8.615850e-47 |
| Msa0878360 | Msa1276970 | 0.808752 | 2.654075e-50 | -8.615850e-47 |
| Msa0878360 | Msa1329800 | 0.805895 | 1.070452e-49 | -8.615850e-47 |
| Msa0878360 | Msa1462470 | 0.817905 | 2.587911e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878360 | MtrunA17_Chr6g0460901 | 94.402 | 518 | 25 | 2 | 1 | 516 | 1 | 516 | 0.0 | 979 |
| Msa0878360 | MtrunA17_Chr6g0460911 | 86.095 | 525 | 48 | 5 | 1 | 514 | 1 | 511 | 0.0 | 879 |
| Msa0878360 | MtrunA17_Chr6g0460881 | 84.778 | 519 | 65 | 4 | 9 | 516 | 5 | 520 | 0.0 | 870 |
| Msa0878360 | MtrunA17_Chr6g0460891 | 83.301 | 515 | 72 | 5 | 9 | 516 | 5 | 512 | 0.0 | 840 |
| Msa0878360 | MtrunA17_Chr7g0254061 | 68.359 | 512 | 145 | 5 | 13 | 516 | 3 | 505 | 0.0 | 661 |
| Msa0878360 | MtrunA17_Chr7g0254011 | 59.642 | 503 | 181 | 8 | 24 | 510 | 21 | 517 | 0.0 | 576 |
| Msa0878360 | MtrunA17_Chr1g0160231 | 36.341 | 399 | 233 | 6 | 33 | 425 | 58 | 441 | 1.97e-75 | 249 |
| Msa0878360 | MtrunA17_Chr8g0381021 | 33.255 | 424 | 270 | 4 | 7 | 425 | 31 | 446 | 1.51e-73 | 244 |
| Msa0878360 | MtrunA17_Chr7g0215781 | 35.817 | 416 | 246 | 7 | 22 | 425 | 22 | 428 | 1.01e-72 | 241 |
| Msa0878360 | MtrunA17_Chr8g0381031 | 32.783 | 424 | 272 | 4 | 7 | 425 | 32 | 447 | 1.08e-68 | 231 |
| Msa0878360 | MtrunA17_Chr2g0296921 | 31.915 | 423 | 277 | 3 | 7 | 425 | 31 | 446 | 1.18e-66 | 226 |
| Msa0878360 | MtrunA17_Chr1g0210461 | 32.787 | 427 | 270 | 5 | 6 | 426 | 19 | 434 | 2.67e-66 | 224 |
| Msa0878360 | MtrunA17_Chr8g0381051 | 34.069 | 408 | 254 | 5 | 22 | 425 | 55 | 451 | 4.45e-66 | 224 |
| Msa0878360 | MtrunA17_Chr8g0358951 | 32.828 | 396 | 256 | 4 | 44 | 439 | 79 | 464 | 5.18e-57 | 199 |
| Msa0878360 | MtrunA17_Chr4g0055481 | 34.794 | 388 | 246 | 3 | 41 | 426 | 40 | 422 | 8.89e-55 | 193 |
| Msa0878360 | MtrunA17_Chr6g0463361 | 31.304 | 115 | 76 | 1 | 325 | 439 | 1 | 112 | 1.42e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878360 | AT1G58030.1 | 64.122 | 524 | 166 | 7 | 1 | 510 | 1 | 516 | 0.0 | 657 |
| Msa0878360 | AT5G36940.1 | 62.626 | 495 | 176 | 4 | 22 | 513 | 5 | 493 | 0.0 | 600 |
| Msa0878360 | AT3G03720.1 | 60.404 | 495 | 180 | 5 | 24 | 513 | 4 | 487 | 0.0 | 592 |
| Msa0878360 | AT4G21120.1 | 34.878 | 410 | 248 | 4 | 22 | 425 | 48 | 444 | 4.61e-77 | 253 |
| Msa0878360 | AT1G05940.4 | 36.195 | 431 | 250 | 9 | 31 | 450 | 35 | 451 | 5.53e-77 | 251 |
| Msa0878360 | AT1G05940.3 | 36.516 | 419 | 238 | 9 | 31 | 438 | 35 | 436 | 2.66e-76 | 250 |
| Msa0878360 | AT1G05940.1 | 36.195 | 431 | 250 | 9 | 31 | 450 | 35 | 451 | 7.07e-76 | 250 |
| Msa0878360 | AT5G04770.1 | 33.656 | 413 | 264 | 4 | 24 | 427 | 32 | 443 | 1.15e-69 | 234 |
| Msa0878360 | AT2G34960.1 | 32.477 | 428 | 262 | 8 | 9 | 425 | 26 | 437 | 1.62e-67 | 228 |
| Msa0878360 | AT3G10600.1 | 33.738 | 412 | 260 | 4 | 41 | 444 | 53 | 459 | 4.02e-67 | 227 |
| Msa0878360 | AT1G17120.1 | 30.198 | 404 | 275 | 3 | 22 | 425 | 59 | 455 | 5.82e-60 | 208 |
| Msa0878360 | AT5G04770.2 | 33.152 | 368 | 236 | 4 | 24 | 382 | 32 | 398 | 2.43e-59 | 202 |
| Msa0878360 | AT1G05940.2 | 33.033 | 333 | 197 | 7 | 116 | 438 | 2 | 318 | 8.76e-50 | 177 |
| Msa0878360 | AT4G21120.2 | 33.667 | 300 | 180 | 4 | 132 | 425 | 8 | 294 | 1.67e-49 | 176 |
| Msa0878360 | AT3G10600.2 | 31.447 | 318 | 205 | 4 | 135 | 444 | 1 | 313 | 5.34e-48 | 172 |
| Msa0878360 | AT5G04770.3 | 32.660 | 297 | 195 | 3 | 135 | 427 | 1 | 296 | 2.01e-44 | 162 |
Find 121 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTACCACTTTCATTTA+TGG | 0.100438 | 6_1:-19267880 | Msa0878360:CDS |
| CATAGTAGCTGGTGGTTATT+TGG | 0.112345 | 6_1:-19266890 | Msa0878360:CDS |
| AGACCCACTTTCAGCATTTA+TGG | 0.145906 | 6_1:-19267114 | Msa0878360:CDS |
| TTTGATTAGGCTGCACTTAT+TGG | 0.215260 | 6_1:-19267200 | Msa0878360:intron |
| GATTACGACTGTACCAAATT+AGG | 0.216213 | 6_1:+19267556 | None:intergenic |
| ATGGATGTCTCTCAACTTGC+TGG | 0.260048 | 6_1:-19265440 | Msa0878360:CDS |
| CCACTTTCATTTATGGTTGC+TGG | 0.262547 | 6_1:-19267873 | Msa0878360:CDS |
| GCCATCGCCATCAAAATTCT+TGG | 0.283000 | 6_1:+19265572 | None:intergenic |
| GTAACTATGGTACTCTTTAC+AGG | 0.292872 | 6_1:+19265494 | None:intergenic |
| GATTGGGTGGTCCTTAATAT+TGG | 0.298884 | 6_1:-19267620 | Msa0878360:CDS |
| TGCAGGGTTTCTTGGTTGAT+TGG | 0.301363 | 6_1:-19267637 | Msa0878360:intron |
| TCGTGGCATCACCCCTAATT+TGG | 0.301503 | 6_1:-19267569 | Msa0878360:intron |
| AACACCATATTCCAATATTA+AGG | 0.309843 | 6_1:+19267609 | None:intergenic |
| GTTAACTGTTCCTCATCTTA+TGG | 0.319574 | 6_1:-19268796 | Msa0878360:CDS |
| TCACAAGAAGGTAGTGATTA+TGG | 0.325301 | 6_1:-19268921 | Msa0878360:CDS |
| ATAATGTTTGCAGGGTTTCT+TGG | 0.327491 | 6_1:-19267645 | Msa0878360:intron |
| ATAGTATCCATTGTTGTTGT+TGG | 0.341490 | 6_1:-19266038 | Msa0878360:CDS |
| AACTGCAAAAGCAGAAGATA+TGG | 0.346384 | 6_1:+19265980 | None:intergenic |
| CAGATGTACATAATGATAAT+AGG | 0.346961 | 6_1:-19264693 | Msa0878360:CDS |
| GCAGGGTTTCTTGGTTGATT+GGG | 0.347507 | 6_1:-19267636 | Msa0878360:intron |
| AAGAAGGTTGATTCTAATGT+TGG | 0.348906 | 6_1:-19268855 | Msa0878360:CDS |
| ATTACGACTGTACCAAATTA+GGG | 0.350770 | 6_1:+19267557 | None:intergenic |
| CCTCAAAGAGATTTGCCAAT+TGG | 0.371631 | 6_1:-19266101 | Msa0878360:CDS |
| GACAAATACGCCTAAACATA+TGG | 0.373226 | 6_1:+19264642 | None:intergenic |
| ATAGTAGCTGGTGGTTATTT+GGG | 0.375685 | 6_1:-19266889 | Msa0878360:CDS |
| TATCCTATCAACATATTCCT+TGG | 0.375880 | 6_1:-19267151 | Msa0878360:CDS |
| CCAATTGGCAAATCTCTTTG+AGG | 0.382184 | 6_1:+19266101 | None:intergenic |
| GGATTCAAAACTGGATGGAT+TGG | 0.383019 | 6_1:-19266868 | Msa0878360:CDS |
| GTAAAGAGTACCATAGTTAC+TGG | 0.385314 | 6_1:-19265491 | Msa0878360:CDS |
| GGTTATTTGGGATTCAAAAC+TGG | 0.389451 | 6_1:-19266877 | Msa0878360:CDS |
| GTTCCTCATCTTATGGCAAT+TGG | 0.391075 | 6_1:-19268789 | Msa0878360:intron |
| TACAGATACATTATAAATGC+TGG | 0.401124 | 6_1:-19265768 | Msa0878360:intron |
| TGGTCCTTAATATTGGAATA+TGG | 0.409863 | 6_1:-19267613 | Msa0878360:CDS |
| TGGCCTTGTTTCTGCCGCCT+TGG | 0.410465 | 6_1:-19265471 | Msa0878360:CDS |
| GATCCAAGGAATATGTTGAT+AGG | 0.414791 | 6_1:+19267148 | None:intergenic |
| GGAGTAGATGGAATGGTTGC+TGG | 0.415004 | 6_1:-19266723 | Msa0878360:CDS |
| CTTCTTCAACATATCTTCTC+AGG | 0.415017 | 6_1:-19264606 | Msa0878360:intron |
| AGCTCTTTGTTATGCTGAGT+TGG | 0.418949 | 6_1:-19267832 | Msa0878360:CDS |
| AAGTCCTCTTTGACAAGTAA+AGG | 0.423678 | 6_1:+19265093 | None:intergenic |
| ATCAATTGATTCAGAGTCAA+TGG | 0.425230 | 6_1:-19265166 | Msa0878360:CDS |
| AGAAACAAGGCCAGTAACTA+TGG | 0.438605 | 6_1:+19265481 | None:intergenic |
| GACAAGGTTCATCATGTTCA+TGG | 0.447931 | 6_1:-19268896 | Msa0878360:CDS |
| ATTGGATATAAACTCCCAAC+AGG | 0.449772 | 6_1:-19266850 | Msa0878360:CDS |
| AAGCTGTAAATTACCCTGTT+GGG | 0.450799 | 6_1:+19266836 | None:intergenic |
| TGCAAGATGTTTAGCAAGAA+GGG | 0.453284 | 6_1:+19265056 | None:intergenic |
| CACTATGCTTACATATGTCT+TGG | 0.453471 | 6_1:-19267777 | Msa0878360:CDS |
| GATTAGGCTGCACTTATTGG+AGG | 0.455919 | 6_1:-19267197 | Msa0878360:intron |
| TCAGGTGTTGGTGCAACAAT+TGG | 0.456854 | 6_1:-19267954 | Msa0878360:intron |
| AGAAGGTTGATTCTAATGTT+GGG | 0.470342 | 6_1:-19268854 | Msa0878360:CDS |
| TGCAGTTAATGGAATGCAAT+GGG | 0.470973 | 6_1:-19265964 | Msa0878360:CDS |
| TGTTGATAGGATAAAACTCT+TGG | 0.475146 | 6_1:+19267161 | None:intergenic |
| TTGAAGAAGCTGCAAATGTA+AGG | 0.480989 | 6_1:+19264620 | None:intergenic |
| GTAATAGCATCCATATGTTT+AGG | 0.489669 | 6_1:-19264652 | Msa0878360:CDS |
| AATGAAGCTGCAATTCCAAT+TGG | 0.492493 | 6_1:+19266086 | None:intergenic |
| TTGCAAGATGTTTAGCAAGA+AGG | 0.492860 | 6_1:+19265055 | None:intergenic |
| TGGTACTCTTTACAGGAACT+TGG | 0.493155 | 6_1:+19265501 | None:intergenic |
| TTGATGTTTATCATAGTAGC+TGG | 0.493185 | 6_1:-19266901 | Msa0878360:CDS |
| CAACACAGATATTGATGCTA+TGG | 0.494756 | 6_1:+19265221 | None:intergenic |
| ATAAATGAAAGTGGTAAAGC+TGG | 0.496991 | 6_1:+19267882 | None:intergenic |
| ACTGCAAAAGCAGAAGATAT+GGG | 0.497820 | 6_1:+19265981 | None:intergenic |
| CAATTGATTCTTGTAGAGAA+GGG | 0.498201 | 6_1:+19265181 | None:intergenic |
| ACAGATACATTATAAATGCT+GGG | 0.498551 | 6_1:-19265767 | Msa0878360:intron |
| GCTTCATTGTCTCTATGTTG+TGG | 0.500066 | 6_1:-19266071 | Msa0878360:CDS |
| GGGTTTCTTGGTTGATTGGG+TGG | 0.502999 | 6_1:-19267633 | Msa0878360:CDS |
| TCAATTGATTCTTGTAGAGA+AGG | 0.504846 | 6_1:+19265180 | None:intergenic |
| TCATGGAGTGCAACTTGCTA+AGG | 0.508461 | 6_1:-19268820 | Msa0878360:CDS |
| CAGAGTCAATGGAGTGTGGT+TGG | 0.511650 | 6_1:-19265155 | Msa0878360:CDS |
| AGTTGCTAGCGCTGCTGAAG+AGG | 0.513006 | 6_1:-19266661 | Msa0878360:intron |
| TGGATGTCTCTCAACTTGCT+GGG | 0.518842 | 6_1:-19265439 | Msa0878360:CDS |
| GTTGGGAACAATAACTCTCA+TGG | 0.520466 | 6_1:-19268837 | Msa0878360:CDS |
| AATACCATAAATGCTGAAAG+TGG | 0.520817 | 6_1:+19267110 | None:intergenic |
| AAAGCTGTAAATTACCCTGT+TGG | 0.522561 | 6_1:+19266835 | None:intergenic |
| GAAACCTTTACTTGTCAAAG+AGG | 0.525058 | 6_1:-19265097 | Msa0878360:CDS |
| GGGTTTGTTGATTCACAAGA+AGG | 0.526741 | 6_1:-19268933 | Msa0878360:CDS |
| TTAATATTGGAATATGGTGT+TGG | 0.534246 | 6_1:-19267607 | Msa0878360:CDS |
| GGAGTGTGGTTGGAGCCATT+TGG | 0.534892 | 6_1:-19265145 | Msa0878360:CDS |
| CCAGCAACCATAAATGAAAG+TGG | 0.535430 | 6_1:+19267873 | None:intergenic |
| TTGCAGTTAATGGAATGCAA+TGG | 0.536583 | 6_1:-19265965 | Msa0878360:CDS |
| TTGGGATTGATATCATAGTA+AGG | 0.538762 | 6_1:+19266008 | None:intergenic |
| ATGCCAAGGCGGCAGAAACA+AGG | 0.539317 | 6_1:+19265468 | None:intergenic |
| GCACTATGCTCATCATTGCT+TGG | 0.550860 | 6_1:-19265735 | Msa0878360:CDS |
| TGTCTCTCAACTTGCTGGGA+TGG | 0.551677 | 6_1:-19265435 | Msa0878360:intron |
| CTTACATATGTCTTGGTGAA+GGG | 0.552617 | 6_1:-19267770 | Msa0878360:intron |
| ATTTGGGATTCAAAACTGGA+TGG | 0.559171 | 6_1:-19266873 | Msa0878360:CDS |
| GCTGGTGTATATGTTCTAGT+TGG | 0.560070 | 6_1:-19267930 | Msa0878360:CDS |
| TGCATTCGGAGTAGATGGAA+TGG | 0.560540 | 6_1:-19266730 | Msa0878360:CDS |
| CTATGCTCATCATTGCTTGG+TGG | 0.561910 | 6_1:-19265732 | Msa0878360:CDS |
| TGTGTTCTACAGGTTAGTGT+AGG | 0.563452 | 6_1:-19265261 | Msa0878360:intron |
| GATCCTGTGTACTGGCATCA+AGG | 0.564750 | 6_1:-19267075 | Msa0878360:CDS |
| ATATTGGAATATGGTGTTGG+TGG | 0.569705 | 6_1:-19267604 | Msa0878360:CDS |
| CTGCAAAAGCAGAAGATATG+GGG | 0.570459 | 6_1:+19265982 | None:intergenic |
| GTTACGTGGATCCTGTGTAC+TGG | 0.570533 | 6_1:-19267083 | Msa0878360:CDS |
| TTCTAGTTGGAACTGTAGCA+AGG | 0.571439 | 6_1:-19267917 | Msa0878360:CDS |
| TACTAAACCAACAACAACAA+TGG | 0.573713 | 6_1:+19266031 | None:intergenic |
| TGATAAGCACTTCCAGCAGA+AGG | 0.576548 | 6_1:+19267798 | None:intergenic |
| AATTGATTCTTGTAGAGAAG+GGG | 0.578128 | 6_1:+19265182 | None:intergenic |
| GCTTACATATGTCTTGGTGA+AGG | 0.586282 | 6_1:-19267771 | Msa0878360:CDS |
| GGTGGAGCTGCTGTTGCTCG+TGG | 0.586754 | 6_1:-19267586 | Msa0878360:CDS |
| TTGATGGCGATGGCAAGGGA+TGG | 0.589991 | 6_1:-19265563 | Msa0878360:CDS |
| ATGTTTATCATAGTAGCTGG+TGG | 0.598210 | 6_1:-19266898 | Msa0878360:CDS |
| GTTGGTGCAACAATTGGAGC+TGG | 0.600425 | 6_1:-19267948 | Msa0878360:CDS |
| GCAAGATGTTTAGCAAGAAG+GGG | 0.601483 | 6_1:+19265057 | None:intergenic |
| ATACCATAAATGCTGAAAGT+GGG | 0.609991 | 6_1:+19267111 | None:intergenic |
| GGTAGTGATTATGGTGGACA+AGG | 0.611186 | 6_1:-19268912 | Msa0878360:CDS |
| TACTTTGTATGCAGAGTACG+AGG | 0.613957 | 6_1:-19266960 | Msa0878360:intron |
| CCTCCTTGATGCCAGTACAC+AGG | 0.615886 | 6_1:+19267072 | None:intergenic |
| GCTTGGTGGAATGTTGCCAC+AGG | 0.621335 | 6_1:-19265718 | Msa0878360:intron |
| TTACCAATTGCCATAAGATG+AGG | 0.621861 | 6_1:+19268786 | None:intergenic |
| ATTGATTCTTGTAGAGAAGG+GGG | 0.623850 | 6_1:+19265183 | None:intergenic |
| TTATGGTATTGATCGTTACG+TGG | 0.624385 | 6_1:-19267097 | Msa0878360:CDS |
| TCTACATCAATATCGATCCA+AGG | 0.628163 | 6_1:+19267134 | None:intergenic |
| ACTGTAGCAAGGGAACATGC+TGG | 0.630358 | 6_1:-19267906 | Msa0878360:CDS |
| TCTAGTTGGAACTGTAGCAA+GGG | 0.631841 | 6_1:-19267916 | Msa0878360:CDS |
| CAGATACATTATAAATGCTG+GGG | 0.645816 | 6_1:-19265766 | Msa0878360:CDS |
| TGCAAAAGCAGAAGATATGG+GGG | 0.661631 | 6_1:+19265983 | None:intergenic |
| TTACGACTGTACCAAATTAG+GGG | 0.682560 | 6_1:+19267558 | None:intergenic |
| AAGGTTCATCATGTTCATGG+AGG | 0.683985 | 6_1:-19268893 | Msa0878360:CDS |
| CAAGAAGGTAGTGATTATGG+TGG | 0.685074 | 6_1:-19268918 | Msa0878360:CDS |
| GATTCAGAGTCAATGGAGTG+TGG | 0.689126 | 6_1:-19265159 | Msa0878360:CDS |
| TTGGATATAAACTCCCAACA+GGG | 0.706317 | 6_1:-19266849 | Msa0878360:intron |
| CCTGTGTACTGGCATCAAGG+AGG | 0.729321 | 6_1:-19267072 | Msa0878360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTGTATTATATTATATTT+GGG | - | chr6_1:19265333-19265352 | Msa0878360:intron | 10.0% |
| !!! | CTTCCATTTATTTTTATAAA+TGG | - | chr6_1:19265019-19265038 | Msa0878360:intron | 15.0% |
| !! | TCTCCATTTATAAAAATAAA+TGG | + | chr6_1:19265025-19265044 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTATAAATGGAG+AGG | - | chr6_1:19265024-19265043 | Msa0878360:intron | 15.0% |
| !!! | TTAAATATTTTTAACTGACA+GGG | - | chr6_1:19265176-19265195 | Msa0878360:CDS | 15.0% |
| !! | ATTAAAATATTCAAGTCAAA+GGG | + | chr6_1:19265307-19265326 | None:intergenic | 15.0% |
| !! | AATTAAAATATTCAAGTCAA+AGG | + | chr6_1:19265308-19265327 | None:intergenic | 15.0% |
| !! | GCTTTGTATTATATTATATT+TGG | - | chr6_1:19265332-19265351 | Msa0878360:intron | 15.0% |
| !!! | GTTTTTCCTTTATTTAATTT+TGG | - | chr6_1:19265376-19265395 | Msa0878360:intron | 15.0% |
| !! | AGATTAATATTTCTTTGATT+AGG | - | chr6_1:19266141-19266160 | Msa0878360:intron | 15.0% |
| !! | TTATTTATGTCAGAAAAAAA+TGG | + | chr6_1:19267827-19267846 | None:intergenic | 15.0% |
| !!! | ATTCTATGTAATTTCTTTTT+AGG | - | chr6_1:19268579-19268598 | Msa0878360:intron | 15.0% |
| !! | TTATAGTAAAGTGTATAATA+TGG | + | chr6_1:19268793-19268812 | None:intergenic | 15.0% |
| !!! | TTTCAATCATTTTTTTCATC+TGG | - | chr6_1:19264639-19264658 | Msa0878360:CDS | 20.0% |
| !!! | TTCAATCATTTTTTTCATCT+GGG | - | chr6_1:19264640-19264659 | Msa0878360:CDS | 20.0% |
| !! | AAGTAAAAAGTAATTGATGA+TGG | - | chr6_1:19264806-19264825 | Msa0878360:intron | 20.0% |
| !!! | GTTAAATATTTTTAACTGAC+AGG | - | chr6_1:19265175-19265194 | Msa0878360:CDS | 20.0% |
| !!! | TTTTAGTGATGTTATTTAAC+TGG | - | chr6_1:19265220-19265239 | Msa0878360:CDS | 20.0% |
| !!! | TTCTTTTCTTGTTTGAATTT+TGG | - | chr6_1:19265250-19265269 | Msa0878360:CDS | 20.0% |
| !!! | ATGTCTCTTGTTTTAATTAT+AGG | - | chr6_1:19266596-19266615 | Msa0878360:intron | 20.0% |
| !!! | AATTATAGGTATTTTGCATT+CGG | - | chr6_1:19266610-19266629 | Msa0878360:intron | 20.0% |
| !! | TTCTTCTTAGTGTATTAAAT+TGG | - | chr6_1:19267482-19267501 | Msa0878360:intron | 20.0% |
| !!! | TACTTAGAAAATGGTATTTT+AGG | + | chr6_1:19267529-19267548 | None:intergenic | 20.0% |
| !! | ACTTATATAATTAGATGTAG+CGG | + | chr6_1:19268469-19268488 | None:intergenic | 20.0% |
| !! | TGACATATGTCAAATAATAA+AGG | + | chr6_1:19268610-19268629 | None:intergenic | 20.0% |
| !!! | CACTTTTCTAAATGTTGTTT+TGG | - | chr6_1:19264716-19264735 | Msa0878360:intron | 25.0% |
| !!! | TAAAAAGTAATTGATGATGG+TGG | - | chr6_1:19264809-19264828 | Msa0878360:intron | 25.0% |
| !!! | AAAAAGTAATTGATGATGGT+GGG | - | chr6_1:19264810-19264829 | Msa0878360:intron | 25.0% |
| !!! | TATTTTTAGTGTTAACTCTC+CGG | - | chr6_1:19265070-19265089 | Msa0878360:CDS | 25.0% |
| !! | GATGTTATTTAACTGGTTTA+AGG | - | chr6_1:19265227-19265246 | Msa0878360:CDS | 25.0% |
| ! | CCTGAACCAAAATTAAATAA+AGG | + | chr6_1:19265385-19265404 | None:intergenic | 25.0% |
| !!! | CCTTTATTTAATTTTGGTTC+AGG | - | chr6_1:19265382-19265401 | Msa0878360:intron | 25.0% |
| ! | TATAGTTTCTTACATTACGT+CGG | - | chr6_1:19265633-19265652 | Msa0878360:intron | 25.0% |
| !! | ATTTTGTGTATAATGTTTGC+AGG | - | chr6_1:19265700-19265719 | Msa0878360:intron | 25.0% |
| !! | TTTTGTGTATAATGTTTGCA+GGG | - | chr6_1:19265701-19265720 | Msa0878360:intron | 25.0% |
| ! | AACACCATATTCCAATATTA+AGG | + | chr6_1:19265748-19265767 | None:intergenic | 25.0% |
| ! | TTAATATTGGAATATGGTGT+TGG | - | chr6_1:19265747-19265766 | Msa0878360:CDS | 25.0% |
| !!! | TCTGAAATTTTGAATTCTGT+TGG | - | chr6_1:19265846-19265865 | Msa0878360:intron | 25.0% |
| ! | AAAACCTATGTATGCAAAAA+AGG | + | chr6_1:19266668-19266687 | None:intergenic | 25.0% |
| ! | CAGATCATAATAATGTATCA+AGG | - | chr6_1:19266718-19266737 | Msa0878360:CDS | 25.0% |
| ! | TAATAATGTATCAAGGAACT+TGG | - | chr6_1:19266725-19266744 | Msa0878360:CDS | 25.0% |
| !! | TGTATCAATGTTTTCAAAAC+CGG | - | chr6_1:19266858-19266877 | Msa0878360:CDS | 25.0% |
| ! | ACACTATTAGAAAGTTTGAA+TGG | + | chr6_1:19267206-19267225 | None:intergenic | 25.0% |
| !!! | AGGAGTATTTATACACAAAA+TGG | + | chr6_1:19267509-19267528 | None:intergenic | 25.0% |
| ! | ACTAATGCATACTTAGAAAA+TGG | + | chr6_1:19267538-19267557 | None:intergenic | 25.0% |
| ! | TACAGATACATTATAAATGC+TGG | - | chr6_1:19267586-19267605 | Msa0878360:CDS | 25.0% |
| ! | ACAGATACATTATAAATGCT+GGG | - | chr6_1:19267587-19267606 | Msa0878360:CDS | 25.0% |
| ! | GAAAATAGAAGACTTTCAAA+GGG | + | chr6_1:19267722-19267741 | None:intergenic | 25.0% |
| ! | AGAAAATAGAAGACTTTCAA+AGG | + | chr6_1:19267723-19267742 | None:intergenic | 25.0% |
| !! | TTGAAAGTCTTCTATTTTCT+AGG | - | chr6_1:19267723-19267742 | Msa0878360:intron | 25.0% |
| ! | TTTATGTCAGAAAAAAATGG+TGG | + | chr6_1:19267824-19267843 | None:intergenic | 25.0% |
| !!! | AGTAACATTTTTTTTGCCTT+AGG | + | chr6_1:19268000-19268019 | None:intergenic | 25.0% |
| ! | ATATCTGTGTTAAAACTTGT+TGG | - | chr6_1:19268043-19268062 | Msa0878360:intron | 25.0% |
| ! | CAGATGTACATAATGATAAT+AGG | - | chr6_1:19268661-19268680 | Msa0878360:intron | 25.0% |
| ! | GATAATAGGAGAAAAATTGT+TGG | - | chr6_1:19268675-19268694 | Msa0878360:intron | 25.0% |
| ! | TCTGTTAGATTTACATTATG+TGG | - | chr6_1:19268876-19268895 | Msa0878360:CDS | 25.0% |
| !! | GTTTTTGACTAGAAGAAAGA+AGG | - | chr6_1:19264483-19264502 | Msa0878360:intron | 30.0% |
| ! | AAGAAGGTTGATTCTAATGT+TGG | - | chr6_1:19264499-19264518 | Msa0878360:intron | 30.0% |
| ! | AGAAGGTTGATTCTAATGTT+GGG | - | chr6_1:19264500-19264519 | Msa0878360:intron | 30.0% |
| CAACATTTAGAAAAGTGAGA+AGG | + | chr6_1:19264713-19264732 | None:intergenic | 30.0% | |
| GAAACAGAGAAGATGATAAA+TGG | + | chr6_1:19264756-19264775 | None:intergenic | 30.0% | |
| !! | TCTTCTCTGTTTCTACAATT+TGG | - | chr6_1:19264763-19264782 | Msa0878360:intron | 30.0% |
| TAGAGACATAAAATAGGTAG+CGG | + | chr6_1:19264855-19264874 | None:intergenic | 30.0% | |
| GAGAGATAGAGACATAAAAT+AGG | + | chr6_1:19264861-19264880 | None:intergenic | 30.0% | |
| AATTGCATCTTCCATTTATG+TGG | - | chr6_1:19264885-19264904 | Msa0878360:intron | 30.0% | |
| ATTGCATCTTCCATTTATGT+GGG | - | chr6_1:19264886-19264905 | Msa0878360:intron | 30.0% | |
| ATTCTCTCTAGTGTCTATTT+AGG | - | chr6_1:19264960-19264979 | Msa0878360:intron | 30.0% | |
| AAAAATTTACACCTTTCCAC+CGG | + | chr6_1:19265099-19265118 | None:intergenic | 30.0% | |
| !!! | TTTAATTTTGGTTCAGGTGT+TGG | - | chr6_1:19265388-19265407 | Msa0878360:intron | 30.0% |
| ATAAATGAAAGTGGTAAAGC+TGG | + | chr6_1:19265475-19265494 | None:intergenic | 30.0% | |
| AGCTTTACCACTTTCATTTA+TGG | - | chr6_1:19265474-19265493 | Msa0878360:CDS | 30.0% | |
| ATAGTTTCTTACATTACGTC+GGG | - | chr6_1:19265634-19265653 | Msa0878360:intron | 30.0% | |
| TGGTCCTTAATATTGGAATA+TGG | - | chr6_1:19265741-19265760 | Msa0878360:CDS | 30.0% | |
| ATTACGACTGTACCAAATTA+GGG | + | chr6_1:19265800-19265819 | None:intergenic | 30.0% | |
| TATACAATATTGCGAAACAG+CGG | - | chr6_1:19265973-19265992 | Msa0878360:CDS | 30.0% | |
| ! | TGTTGATAGGATAAAACTCT+TGG | + | chr6_1:19266196-19266215 | None:intergenic | 30.0% |
| TATCCTATCAACATATTCCT+TGG | - | chr6_1:19266203-19266222 | Msa0878360:intron | 30.0% | |
| ATACCATAAATGCTGAAAGT+GGG | + | chr6_1:19266246-19266265 | None:intergenic | 30.0% | |
| AATACCATAAATGCTGAAAG+TGG | + | chr6_1:19266247-19266266 | None:intergenic | 30.0% | |
| TTGATGTTTATCATAGTAGC+TGG | - | chr6_1:19266453-19266472 | Msa0878360:intron | 30.0% | |
| ATTATGTGTCATGGTTCAAT+CGG | - | chr6_1:19266903-19266922 | Msa0878360:CDS | 30.0% | |
| TTAGAAAGTTTGAATGGCAA+TGG | + | chr6_1:19267200-19267219 | None:intergenic | 30.0% | |
| ! | GTGTTTTACTTTGATCTAAC+AGG | - | chr6_1:19267222-19267241 | Msa0878360:intron | 30.0% |
| ! | ATAGTATCCATTGTTGTTGT+TGG | - | chr6_1:19267316-19267335 | Msa0878360:intron | 30.0% |
| TACTAAACCAACAACAACAA+TGG | + | chr6_1:19267326-19267345 | None:intergenic | 30.0% | |
| TTGGGATTGATATCATAGTA+AGG | + | chr6_1:19267349-19267368 | None:intergenic | 30.0% | |
| CAGATACATTATAAATGCTG+GGG | - | chr6_1:19267588-19267607 | Msa0878360:CDS | 30.0% | |
| TCTAGGAAAGATTATTGATG+TGG | - | chr6_1:19267740-19267759 | Msa0878360:intron | 30.0% | |
| !! | AGTTTTGACAATTGCACATA+TGG | + | chr6_1:19267955-19267974 | None:intergenic | 30.0% |
| ATAACATCTGTTGTTACCTA+AGG | - | chr6_1:19267981-19268000 | Msa0878360:intron | 30.0% | |
| ! | AATTGATTCTTGTAGAGAAG+GGG | + | chr6_1:19268175-19268194 | None:intergenic | 30.0% |
| ! | CAATTGATTCTTGTAGAGAA+GGG | + | chr6_1:19268176-19268195 | None:intergenic | 30.0% |
| ! | TCAATTGATTCTTGTAGAGA+AGG | + | chr6_1:19268177-19268196 | None:intergenic | 30.0% |
| ! | ATCAATTGATTCAGAGTCAA+TGG | - | chr6_1:19268188-19268207 | Msa0878360:intron | 30.0% |
| ! | CTTTTAGATTGATCACCAAA+TGG | + | chr6_1:19268227-19268246 | None:intergenic | 30.0% |
| !!! | ATCCTCACTCCTATTTTTTA+TGG | - | chr6_1:19268635-19268654 | Msa0878360:intron | 30.0% |
| ATCCATAAAAAATAGGAGTG+AGG | + | chr6_1:19268640-19268659 | None:intergenic | 30.0% | |
| CATCTGCATCCATAAAAAAT+AGG | + | chr6_1:19268647-19268666 | None:intergenic | 30.0% | |
| GTAATAGCATCCATATGTTT+AGG | - | chr6_1:19268702-19268721 | Msa0878360:intron | 30.0% | |
| ATCTTCTCAGGTAAATTTAG+AGG | - | chr6_1:19268760-19268779 | Msa0878360:intron | 30.0% | |
| TCTTCTCAGGTAAATTTAGA+GGG | - | chr6_1:19268761-19268780 | Msa0878360:intron | 30.0% | |
| AGATTTACATTATGTGGAGT+TGG | - | chr6_1:19268882-19268901 | Msa0878360:CDS | 30.0% | |
| CATCTTGATCTATACATGTT+AGG | + | chr6_1:19268938-19268957 | None:intergenic | 30.0% | |
| TCACAAGAAGGTAGTGATTA+TGG | - | chr6_1:19264433-19264452 | Msa0878360:intron | 35.0% | |
| GTTAACTGTTCCTCATCTTA+TGG | - | chr6_1:19264558-19264577 | Msa0878360:intron | 35.0% | |
| TTACCAATTGCCATAAGATG+AGG | + | chr6_1:19264571-19264590 | None:intergenic | 35.0% | |
| GCAACAACATTTCAAGAGAT+AGG | + | chr6_1:19264610-19264629 | None:intergenic | 35.0% | |
| AGAGAAGATGATAAATGGAG+AGG | + | chr6_1:19264751-19264770 | None:intergenic | 35.0% | |
| AGAGACATAAAATAGGTAGC+GGG | + | chr6_1:19264854-19264873 | None:intergenic | 35.0% | |
| TCTCTAGTGTCTATTTAGGT+GGG | - | chr6_1:19264964-19264983 | Msa0878360:intron | 35.0% | |
| CACTATGCTTACATATGTCT+TGG | - | chr6_1:19265577-19265596 | Msa0878360:intron | 35.0% | |
| CTTACATATGTCTTGGTGAA+GGG | - | chr6_1:19265584-19265603 | Msa0878360:intron | 35.0% | |
| TAGTTTCTTACATTACGTCG+GGG | - | chr6_1:19265635-19265654 | Msa0878360:intron | 35.0% | |
| ATAATGTTTGCAGGGTTTCT+TGG | - | chr6_1:19265709-19265728 | Msa0878360:intron | 35.0% | |
| ! | ATATTGGAATATGGTGTTGG+TGG | - | chr6_1:19265750-19265769 | Msa0878360:CDS | 35.0% |
| TTACGACTGTACCAAATTAG+GGG | + | chr6_1:19265799-19265818 | None:intergenic | 35.0% | |
| GATTACGACTGTACCAAATT+AGG | + | chr6_1:19265801-19265820 | None:intergenic | 35.0% | |
| TTTGATTAGGCTGCACTTAT+TGG | - | chr6_1:19266154-19266173 | Msa0878360:intron | 35.0% | |
| GATCCAAGGAATATGTTGAT+AGG | + | chr6_1:19266209-19266228 | None:intergenic | 35.0% | |
| TCTACATCAATATCGATCCA+AGG | + | chr6_1:19266223-19266242 | None:intergenic | 35.0% | |
| !! | TTATGGTATTGATCGTTACG+TGG | - | chr6_1:19266257-19266276 | Msa0878360:intron | 35.0% |
| ATGTTTATCATAGTAGCTGG+TGG | - | chr6_1:19266456-19266475 | Msa0878360:intron | 35.0% | |
| ATAGTAGCTGGTGGTTATTT+GGG | - | chr6_1:19266465-19266484 | Msa0878360:intron | 35.0% | |
| ! | GGTTATTTGGGATTCAAAAC+TGG | - | chr6_1:19266477-19266496 | Msa0878360:intron | 35.0% |
| ! | ATTTGGGATTCAAAACTGGA+TGG | - | chr6_1:19266481-19266500 | Msa0878360:intron | 35.0% |
| ATTGGATATAAACTCCCAAC+AGG | - | chr6_1:19266504-19266523 | Msa0878360:intron | 35.0% | |
| TTGGATATAAACTCCCAACA+GGG | - | chr6_1:19266505-19266524 | Msa0878360:intron | 35.0% | |
| AAGCTGTAAATTACCCTGTT+GGG | + | chr6_1:19266521-19266540 | None:intergenic | 35.0% | |
| AAAGCTGTAAATTACCCTGT+TGG | + | chr6_1:19266522-19266541 | None:intergenic | 35.0% | |
| ACCAAACATAGATGGATCAA+GGG | + | chr6_1:19266556-19266575 | None:intergenic | 35.0% | |
| AACCAAACATAGATGGATCA+AGG | + | chr6_1:19266557-19266576 | None:intergenic | 35.0% | |
| CTTGAACAACCAAACATAGA+TGG | + | chr6_1:19266564-19266583 | None:intergenic | 35.0% | |
| ! | TATTTTGCATTCGGAGTAGA+TGG | - | chr6_1:19266619-19266638 | Msa0878360:intron | 35.0% |
| !!! | ACAGCCTTTTTTGCATACAT+AGG | - | chr6_1:19266661-19266680 | Msa0878360:intron | 35.0% |
| TCAGTCCTATTTGACCTAAA+AGG | + | chr6_1:19266751-19266770 | None:intergenic | 35.0% | |
| ! | CCATGACACATAATTTTCAC+CGG | + | chr6_1:19266897-19266916 | None:intergenic | 35.0% |
| AATGAAGCTGCAATTCCAAT+TGG | + | chr6_1:19267271-19267290 | None:intergenic | 35.0% | |
| ACTGCAAAAGCAGAAGATAT+GGG | + | chr6_1:19267376-19267395 | None:intergenic | 35.0% | |
| AACTGCAAAAGCAGAAGATA+TGG | + | chr6_1:19267377-19267396 | None:intergenic | 35.0% | |
| !! | TCTTCTGCTTTTGCAGTTAA+TGG | - | chr6_1:19267379-19267398 | Msa0878360:intron | 35.0% |
| TTGCAGTTAATGGAATGCAA+TGG | - | chr6_1:19267389-19267408 | Msa0878360:intron | 35.0% | |
| TGCAGTTAATGGAATGCAAT+GGG | - | chr6_1:19267390-19267409 | Msa0878360:intron | 35.0% | |
| TAGAAGACTTTCAAAGGGAA+AGG | + | chr6_1:19267717-19267736 | None:intergenic | 35.0% | |
| GTAACTATGGTACTCTTTAC+AGG | + | chr6_1:19267863-19267882 | None:intergenic | 35.0% | |
| !! | GTAAAGAGTACCATAGTTAC+TGG | - | chr6_1:19267863-19267882 | Msa0878360:CDS | 35.0% |
| TTACTTTGCTTGTGTTCTAC+AGG | - | chr6_1:19268083-19268102 | Msa0878360:intron | 35.0% | |
| CAACACAGATATTGATGCTA+TGG | + | chr6_1:19268136-19268155 | None:intergenic | 35.0% | |
| ! | ATTGATTCTTGTAGAGAAGG+GGG | + | chr6_1:19268174-19268193 | None:intergenic | 35.0% |
| GAAACCTTTACTTGTCAAAG+AGG | - | chr6_1:19268257-19268276 | Msa0878360:intron | 35.0% | |
| AAGTCCTCTTTGACAAGTAA+AGG | + | chr6_1:19268264-19268283 | None:intergenic | 35.0% | |
| TGCAAGATGTTTAGCAAGAA+GGG | + | chr6_1:19268301-19268320 | None:intergenic | 35.0% | |
| TTGCAAGATGTTTAGCAAGA+AGG | + | chr6_1:19268302-19268321 | None:intergenic | 35.0% | |
| ! | TGTTACATTTTGCACAGACA+CGG | + | chr6_1:19268538-19268557 | None:intergenic | 35.0% |
| AAAAATAGGAGTGAGGATGA+AGG | + | chr6_1:19268633-19268652 | None:intergenic | 35.0% | |
| GACAAATACGCCTAAACATA+TGG | + | chr6_1:19268715-19268734 | None:intergenic | 35.0% | |
| TTGAAGAAGCTGCAAATGTA+AGG | + | chr6_1:19268737-19268756 | None:intergenic | 35.0% | |
| CTTCTTCAACATATCTTCTC+AGG | - | chr6_1:19268748-19268767 | Msa0878360:intron | 35.0% | |
| TTTACATTATGTGGAGTTGG+TGG | - | chr6_1:19268885-19268904 | Msa0878360:CDS | 35.0% | |
| !! | GGGTTTGTTGATTCACAAGA+AGG | - | chr6_1:19264421-19264440 | Msa0878360:intron | 40.0% |
| CAAGAAGGTAGTGATTATGG+TGG | - | chr6_1:19264436-19264455 | Msa0878360:intron | 40.0% | |
| GACAAGGTTCATCATGTTCA+TGG | - | chr6_1:19264458-19264477 | Msa0878360:intron | 40.0% | |
| AAGGTTCATCATGTTCATGG+AGG | - | chr6_1:19264461-19264480 | Msa0878360:intron | 40.0% | |
| GTTGGGAACAATAACTCTCA+TGG | - | chr6_1:19264517-19264536 | Msa0878360:intron | 40.0% | |
| GTTCCTCATCTTATGGCAAT+TGG | - | chr6_1:19264565-19264584 | Msa0878360:intron | 40.0% | |
| !!! | TTTTTTCATCTGGGTCAGTC+AGG | - | chr6_1:19264649-19264668 | Msa0878360:CDS | 40.0% |
| ! | TTTTTCATCTGGGTCAGTCA+GGG | - | chr6_1:19264650-19264669 | Msa0878360:CDS | 40.0% |
| ATACCACTAGCCCACATAAA+TGG | + | chr6_1:19264899-19264918 | None:intergenic | 40.0% | |
| !! | TTTATGTGGGCTAGTGGTAT+TGG | - | chr6_1:19264899-19264918 | Msa0878360:intron | 40.0% |
| CTCTCTAGTGTCTATTTAGG+TGG | - | chr6_1:19264963-19264982 | Msa0878360:intron | 40.0% | |
| ! | AGGGTCACTTCAGTTTTCTT+GGG | + | chr6_1:19265288-19265307 | None:intergenic | 40.0% |
| ! | AAGGGTCACTTCAGTTTTCT+TGG | + | chr6_1:19265289-19265308 | None:intergenic | 40.0% |
| GCTGGTGTATATGTTCTAGT+TGG | - | chr6_1:19265424-19265443 | Msa0878360:intron | 40.0% | |
| ! | TTCTAGTTGGAACTGTAGCA+AGG | - | chr6_1:19265437-19265456 | Msa0878360:CDS | 40.0% |
| TCTAGTTGGAACTGTAGCAA+GGG | - | chr6_1:19265438-19265457 | Msa0878360:CDS | 40.0% | |
| CCAGCAACCATAAATGAAAG+TGG | + | chr6_1:19265484-19265503 | None:intergenic | 40.0% | |
| CCACTTTCATTTATGGTTGC+TGG | - | chr6_1:19265481-19265500 | Msa0878360:CDS | 40.0% | |
| ! | AGCTCTTTGTTATGCTGAGT+TGG | - | chr6_1:19265522-19265541 | Msa0878360:CDS | 40.0% |
| GCTTACATATGTCTTGGTGA+AGG | - | chr6_1:19265583-19265602 | Msa0878360:intron | 40.0% | |
| GATTGGGTGGTCCTTAATAT+TGG | - | chr6_1:19265734-19265753 | Msa0878360:CDS | 40.0% | |
| CTGTTACGCAACACTAGTAT+AGG | + | chr6_1:19266008-19266027 | None:intergenic | 40.0% | |
| AGACCCACTTTCAGCATTTA+TGG | - | chr6_1:19266240-19266259 | Msa0878360:intron | 40.0% | |
| TACTTTGTATGCAGAGTACG+AGG | - | chr6_1:19266394-19266413 | Msa0878360:intron | 40.0% | |
| CATAGTAGCTGGTGGTTATT+TGG | - | chr6_1:19266464-19266483 | Msa0878360:intron | 40.0% | |
| GGATTCAAAACTGGATGGAT+TGG | - | chr6_1:19266486-19266505 | Msa0878360:intron | 40.0% | |
| ACCCTTGATCCATCTATGTT+TGG | - | chr6_1:19266552-19266571 | Msa0878360:intron | 40.0% | |
| !! | ATCAAGGAACTTGGCCTTTT+AGG | - | chr6_1:19266734-19266753 | Msa0878360:CDS | 40.0% |
| !! | CTTGGCCTTTTAGGTCAAAT+AGG | - | chr6_1:19266743-19266762 | Msa0878360:intron | 40.0% |
| ! | CAATGTTTTCAAAACCGGAC+TGG | - | chr6_1:19266863-19266882 | Msa0878360:CDS | 40.0% |
| CCGGTGAAAATTATGTGTCA+TGG | - | chr6_1:19266894-19266913 | Msa0878360:CDS | 40.0% | |
| TAGAATCGAGTCAAACTGGT+TGG | + | chr6_1:19267022-19267041 | None:intergenic | 40.0% | |
| !! | CTTCTAGAATCGAGTCAAAC+TGG | + | chr6_1:19267026-19267045 | None:intergenic | 40.0% |
| TAACTAGTTCCCGGTTCAAT+CGG | - | chr6_1:19267090-19267109 | Msa0878360:CDS | 40.0% | |
| GGACACATCAAAAACCTTGA+CGG | - | chr6_1:19267166-19267185 | Msa0878360:CDS | 40.0% | |
| CCAATTGGCAAATCTCTTTG+AGG | + | chr6_1:19267256-19267275 | None:intergenic | 40.0% | |
| CCTCAAAGAGATTTGCCAAT+TGG | - | chr6_1:19267253-19267272 | Msa0878360:intron | 40.0% | |
| GCTTCATTGTCTCTATGTTG+TGG | - | chr6_1:19267283-19267302 | Msa0878360:intron | 40.0% | |
| TGCAAAAGCAGAAGATATGG+GGG | + | chr6_1:19267374-19267393 | None:intergenic | 40.0% | |
| CTGCAAAAGCAGAAGATATG+GGG | + | chr6_1:19267375-19267394 | None:intergenic | 40.0% | |
| TGTGACAGTTCATAAAGCTC+AGG | - | chr6_1:19267444-19267463 | Msa0878360:intron | 40.0% | |
| ! | CTCTCAGCCAAGAATTTTGA+TGG | - | chr6_1:19267775-19267794 | Msa0878360:CDS | 40.0% |
| !!! | AATTTTGATGGCGATGGCAA+GGG | - | chr6_1:19267787-19267806 | Msa0878360:CDS | 40.0% |
| TGGTACTCTTTACAGGAACT+TGG | + | chr6_1:19267856-19267875 | None:intergenic | 40.0% | |
| AGAAACAAGGCCAGTAACTA+TGG | + | chr6_1:19267876-19267895 | None:intergenic | 40.0% | |
| ATCCATGAAAAATGCCAAGG+CGG | + | chr6_1:19267900-19267919 | None:intergenic | 40.0% | |
| GACATCCATGAAAAATGCCA+AGG | + | chr6_1:19267903-19267922 | None:intergenic | 40.0% | |
| TGTGTTCTACAGGTTAGTGT+AGG | - | chr6_1:19268093-19268112 | Msa0878360:intron | 40.0% | |
| GCAAGATGTTTAGCAAGAAG+GGG | + | chr6_1:19268300-19268319 | None:intergenic | 40.0% | |
| CTTCAGATTGAAGACGTGTT+TGG | - | chr6_1:19268396-19268415 | Msa0878360:intron | 40.0% | |
| !! | GGTAGTGATTATGGTGGACA+AGG | - | chr6_1:19264442-19264461 | Msa0878360:intron | 45.0% |
| !! | TCATGGAGTGCAACTTGCTA+AGG | - | chr6_1:19264534-19264553 | Msa0878360:intron | 45.0% |
| ! | TTTTCATCTGGGTCAGTCAG+GGG | - | chr6_1:19264651-19264670 | Msa0878360:CDS | 45.0% |
| ! | AGCGGGTTCTACCATTAAGT+GGG | + | chr6_1:19264837-19264856 | None:intergenic | 45.0% |
| !! | TAGCGGGTTCTACCATTAAG+TGG | + | chr6_1:19264838-19264857 | None:intergenic | 45.0% |
| !! | CTTCCATTTATGTGGGCTAG+TGG | - | chr6_1:19264893-19264912 | Msa0878360:intron | 45.0% |
| !! | TAGTGGTATTGGCTTGGGTT+GGG | - | chr6_1:19264910-19264929 | Msa0878360:intron | 45.0% |
| AGAGAATACCTGAGACCTCA+AGG | + | chr6_1:19264947-19264966 | None:intergenic | 45.0% | |
| AGTGTTAACTCTCCGGTTTC+CGG | - | chr6_1:19265077-19265096 | Msa0878360:CDS | 45.0% | |
| ! | GTCACTTCAGTTTTCTTGGG+GGG | + | chr6_1:19265285-19265304 | None:intergenic | 45.0% |
| ! | GGTCACTTCAGTTTTCTTGG+GGG | + | chr6_1:19265286-19265305 | None:intergenic | 45.0% |
| ! | GGGTCACTTCAGTTTTCTTG+GGG | + | chr6_1:19265287-19265306 | None:intergenic | 45.0% |
| !! | TCAGGTGTTGGTGCAACAAT+TGG | - | chr6_1:19265400-19265419 | Msa0878360:intron | 45.0% |
| TGATAAGCACTTCCAGCAGA+AGG | + | chr6_1:19265559-19265578 | None:intergenic | 45.0% | |
| TGCAGGGTTTCTTGGTTGAT+TGG | - | chr6_1:19265717-19265736 | Msa0878360:intron | 45.0% | |
| GCAGGGTTTCTTGGTTGATT+GGG | - | chr6_1:19265718-19265737 | Msa0878360:intron | 45.0% | |
| TTGCGAAACAGCGGCTATAA+TGG | - | chr6_1:19265982-19266001 | Msa0878360:CDS | 45.0% | |
| CCAGTGATGTTAGTTGCTTG+CGG | + | chr6_1:19266053-19266072 | None:intergenic | 45.0% | |
| CGCAAGCAACTAACATCACT+GGG | - | chr6_1:19266051-19266070 | Msa0878360:CDS | 45.0% | |
| GATTAGGCTGCACTTATTGG+AGG | - | chr6_1:19266157-19266176 | Msa0878360:intron | 45.0% | |
| TGCATTCGGAGTAGATGGAA+TGG | - | chr6_1:19266624-19266643 | Msa0878360:intron | 45.0% | |
| CCAGCAGAATAACTAGTTCC+CGG | - | chr6_1:19267081-19267100 | Msa0878360:CDS | 45.0% | |
| CATATGATGCTGCTGTGAAG+TGG | - | chr6_1:19267139-19267158 | Msa0878360:CDS | 45.0% | |
| ACATCAAAAACCTTGACGGC+AGG | - | chr6_1:19267170-19267189 | Msa0878360:CDS | 45.0% | |
| GCACTATGCTCATCATTGCT+TGG | - | chr6_1:19267619-19267638 | Msa0878360:CDS | 45.0% | |
| CTATGCTCATCATTGCTTGG+TGG | - | chr6_1:19267622-19267641 | Msa0878360:CDS | 45.0% | |
| ! | TTGTGAGCTTAGAGTACCTG+TGG | + | chr6_1:19267655-19267674 | None:intergenic | 45.0% |
| !!! | GCCAAGAATTTTGATGGCGA+TGG | - | chr6_1:19267781-19267800 | Msa0878360:CDS | 45.0% |
| GCCATCGCCATCAAAATTCT+TGG | + | chr6_1:19267785-19267804 | None:intergenic | 45.0% | |
| !!! | GAATTTTGATGGCGATGGCA+AGG | - | chr6_1:19267786-19267805 | Msa0878360:CDS | 45.0% |
| ATGGATGTCTCTCAACTTGC+TGG | - | chr6_1:19267914-19267933 | Msa0878360:CDS | 45.0% | |
| ! | TGGATGTCTCTCAACTTGCT+GGG | - | chr6_1:19267915-19267934 | Msa0878360:CDS | 45.0% |
| GATTCAGAGTCAATGGAGTG+TGG | - | chr6_1:19268195-19268214 | Msa0878360:intron | 45.0% | |
| GTACATGTCTGACACCAACA+CGG | - | chr6_1:19268431-19268450 | Msa0878360:intron | 45.0% | |
| ! | TTTTGCACAGACACGGAAAC+TGG | + | chr6_1:19268531-19268550 | None:intergenic | 45.0% |
| ! | GGTGGCATTCTTCTTTTGTC+TGG | - | chr6_1:19268903-19268922 | Msa0878360:CDS | 45.0% |
| !! | TGATGGTGGGACCCACTTAA+TGG | - | chr6_1:19264823-19264842 | Msa0878360:intron | 50.0% |
| !! | TGGGCTAGTGGTATTGGCTT+GGG | - | chr6_1:19264905-19264924 | Msa0878360:intron | 50.0% |
| !! | CTAGTGGTATTGGCTTGGGT+TGG | - | chr6_1:19264909-19264928 | Msa0878360:intron | 50.0% |
| GAATACCTGAGACCTCAAGG+AGG | + | chr6_1:19264944-19264963 | None:intergenic | 50.0% | |
| TACACCTTTCCACCGGAAAC+CGG | + | chr6_1:19265092-19265111 | None:intergenic | 50.0% | |
| ! | TTCAGTTTTCTTGGGGGGTC+TGG | + | chr6_1:19265280-19265299 | None:intergenic | 50.0% |
| GTTGGTGCAACAATTGGAGC+TGG | - | chr6_1:19265406-19265425 | Msa0878360:intron | 50.0% | |
| ACTGTAGCAAGGGAACATGC+TGG | - | chr6_1:19265448-19265467 | Msa0878360:CDS | 50.0% | |
| !! | GCAAGTCGTTTTCCTTCTGC+TGG | - | chr6_1:19265544-19265563 | Msa0878360:CDS | 50.0% |
| GGGTTTCTTGGTTGATTGGG+TGG | - | chr6_1:19265721-19265740 | Msa0878360:CDS | 50.0% | |
| TCGTGGCATCACCCCTAATT+TGG | - | chr6_1:19265785-19265804 | Msa0878360:intron | 50.0% | |
| CCGCAAGCAACTAACATCAC+TGG | - | chr6_1:19266050-19266069 | Msa0878360:CDS | 50.0% | |
| GTTACGTGGATCCTGTGTAC+TGG | - | chr6_1:19266271-19266290 | Msa0878360:intron | 50.0% | |
| ! | GATCCTGTGTACTGGCATCA+AGG | - | chr6_1:19266279-19266298 | Msa0878360:intron | 50.0% |
| AAAGCAGTGCAGCAGACTTG+AGG | + | chr6_1:19266329-19266348 | None:intergenic | 50.0% | |
| !! | TCTGCTGCACTGCTTTTCGA+AGG | - | chr6_1:19266333-19266352 | Msa0878360:intron | 50.0% |
| GGAGTAGATGGAATGGTTGC+TGG | - | chr6_1:19266631-19266650 | Msa0878360:intron | 50.0% | |
| ! | TGGACTGCAGTTGGTTCAAC+TGG | + | chr6_1:19267002-19267021 | None:intergenic | 50.0% |
| CAAACTGGTTGGACTGCAGT+TGG | + | chr6_1:19267011-19267030 | None:intergenic | 50.0% | |
| CCGGGAACTAGTTATTCTGC+TGG | + | chr6_1:19267084-19267103 | None:intergenic | 50.0% | |
| TAGTTCCCGGTTCAATCGGT+CGG | - | chr6_1:19267094-19267113 | Msa0878360:CDS | 50.0% | |
| ATCAGACCGACCGATTGAAC+CGG | + | chr6_1:19267103-19267122 | None:intergenic | 50.0% | |
| ATGCTGCTGTGAAGTGGTCA+TGG | - | chr6_1:19267145-19267164 | Msa0878360:CDS | 50.0% | |
| !! | GCAGAAGATATGGGGGTGTT+GGG | + | chr6_1:19267367-19267386 | None:intergenic | 50.0% |
| ! | AGCAGAAGATATGGGGGTGT+TGG | + | chr6_1:19267368-19267387 | None:intergenic | 50.0% |
| ! | TGCCGCCTTGGCATTTTTCA+TGG | - | chr6_1:19267895-19267914 | Msa0878360:CDS | 50.0% |
| !! | TGTCTCTCAACTTGCTGGGA+TGG | - | chr6_1:19267919-19267938 | Msa0878360:CDS | 50.0% |
| CAGAGTCAATGGAGTGTGGT+TGG | - | chr6_1:19268199-19268218 | Msa0878360:intron | 50.0% | |
| !! | GTGGGCTAGTGGTATTGGCT+TGG | - | chr6_1:19264904-19264923 | Msa0878360:intron | 55.0% |
| GTTAACTCTCCGGTTTCCGG+TGG | - | chr6_1:19265080-19265099 | Msa0878360:CDS | 55.0% | |
| CCTCCTTGATGCCAGTACAC+AGG | + | chr6_1:19266285-19266304 | None:intergenic | 55.0% | |
| ! | CCTGTGTACTGGCATCAAGG+AGG | - | chr6_1:19266282-19266301 | Msa0878360:intron | 55.0% |
| AGTTGCTAGCGCTGCTGAAG+AGG | - | chr6_1:19266693-19266712 | Msa0878360:CDS | 55.0% | |
| !! | AACCGGACTGGCGTTTGAAC+CGG | - | chr6_1:19266875-19266894 | Msa0878360:CDS | 55.0% |
| TCAGACCGACCGATTGAACC+GGG | + | chr6_1:19267102-19267121 | None:intergenic | 55.0% | |
| CAATGGCAATCCTGCCGTCA+AGG | + | chr6_1:19267183-19267202 | None:intergenic | 55.0% | |
| ! | GCTTGGTGGAATGTTGCCAC+AGG | - | chr6_1:19267636-19267655 | Msa0878360:intron | 55.0% |
| !! | TTGATGGCGATGGCAAGGGA+TGG | - | chr6_1:19267791-19267810 | Msa0878360:CDS | 55.0% |
| ATGCCAAGGCGGCAGAAACA+AGG | + | chr6_1:19267889-19267908 | None:intergenic | 55.0% | |
| GGAGTGTGGTTGGAGCCATT+TGG | - | chr6_1:19268209-19268228 | Msa0878360:intron | 55.0% | |
| GGCATGTGTTCGTTCCGTGT+TGG | + | chr6_1:19268448-19268467 | None:intergenic | 55.0% | |
| ATCTGGGTCAGTCAGGGGTG+TGG | - | chr6_1:19264656-19264675 | Msa0878360:CDS | 60.0% | |
| ! | GGTCAGTCAGGGGTGTGGAA+TGG | - | chr6_1:19264661-19264680 | Msa0878360:CDS | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr6_1:19264929-19264948 | Msa0878360:intron | 60.0% |
| GTGCTCCTCCTTGAGGTCTC+AGG | - | chr6_1:19264936-19264955 | Msa0878360:intron | 60.0% | |
| CTCTCCGGTTTCCGGTGGAA+AGG | - | chr6_1:19265085-19265104 | Msa0878360:CDS | 60.0% | |
| !! | CACCGGTTCAAACGCCAGTC+CGG | + | chr6_1:19266880-19266899 | None:intergenic | 60.0% |
| !! | TGGCCTTGTTTCTGCCGCCT+TGG | - | chr6_1:19267883-19267902 | Msa0878360:CDS | 60.0% |
| GGTGGAGCTGCTGTTGCTCG+TGG | - | chr6_1:19265768-19265787 | Msa0878360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 19264418 | 19268958 | 19264418 | ID=Msa0878360;Name=Msa0878360 |
| chr6_1 | mRNA | 19264418 | 19268958 | 19264418 | ID=Msa0878360-mRNA-1;Parent=Msa0878360;Name=Msa0878360-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.54|0.33|1|1|1|12|0|517 |
| chr6_1 | exon | 19268790 | 19268958 | 19268790 | ID=Msa0878360-mRNA-1:exon:5240;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19267771 | 19267972 | 19267771 | ID=Msa0878360-mRNA-1:exon:5239;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19267570 | 19267654 | 19267570 | ID=Msa0878360-mRNA-1:exon:5238;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19267073 | 19267213 | 19267073 | ID=Msa0878360-mRNA-1:exon:5237;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19266850 | 19266968 | 19266850 | ID=Msa0878360-mRNA-1:exon:5236;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19266662 | 19266758 | 19266662 | ID=Msa0878360-mRNA-1:exon:5235;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19265960 | 19266132 | 19265960 | ID=Msa0878360-mRNA-1:exon:5234;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19265719 | 19265785 | 19265719 | ID=Msa0878360-mRNA-1:exon:5233;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19265436 | 19265594 | 19265436 | ID=Msa0878360-mRNA-1:exon:5232;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19265046 | 19265271 | 19265046 | ID=Msa0878360-mRNA-1:exon:5231;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19264607 | 19264712 | 19264607 | ID=Msa0878360-mRNA-1:exon:5230;Parent=Msa0878360-mRNA-1 |
| chr6_1 | exon | 19264418 | 19264427 | 19264418 | ID=Msa0878360-mRNA-1:exon:5229;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19268790 | 19268958 | 19268790 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19267771 | 19267972 | 19267771 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19267570 | 19267654 | 19267570 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19267073 | 19267213 | 19267073 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19266850 | 19266968 | 19266850 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19266662 | 19266758 | 19266662 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19265960 | 19266132 | 19265960 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19265719 | 19265785 | 19265719 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19265436 | 19265594 | 19265436 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19265046 | 19265271 | 19265046 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19264607 | 19264712 | 19264607 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| chr6_1 | CDS | 19264418 | 19264427 | 19264418 | ID=Msa0878360-mRNA-1:cds;Parent=Msa0878360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
