AlfalfaGEDB | Msa1329800

M. sativa cultivar zhongmu-4 / Msa1329800

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329800	sp\|Q9SSF8\|CDPKU_ARATH	77.338	556	110	4	1	555	1	541	0.0	894

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329800	A0A072V1D7	98.205	557	6	2	1	555	1	555	0.0	1124

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1329800	0.830832	2.351398e-55	-8.615850e-47
Msa0010770	Msa1329800	0.825469	4.607677e-54	-8.615850e-47
Msa0012710	Msa1329800	0.873892	1.033577e-67	-8.615850e-47
Msa0017320	Msa1329800	0.855840	4.816445e-62	-8.615850e-47
Msa0038870	Msa1329800	0.810518	1.107435e-50	-8.615850e-47
Msa0040620	Msa1329800	0.806214	9.170728e-50	-8.615850e-47
Msa0041690	Msa1329800	0.830153	3.446586e-55	-8.615850e-47
Msa0043500	Msa1329800	0.815728	7.968912e-52	-8.615850e-47
Msa0043650	Msa1329800	0.823919	1.068650e-53	-8.615850e-47
Msa0045550	Msa1329800	0.801862	7.369064e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1329800	MtrunA17_Chr4g0059951	98.205	557	6	2	1	555	1	555	1124
Msa1329800	MtrunA17_Chr7g0242561	68.566	544	154	3	1	544	1	527	769
Msa1329800	MtrunA17_Chr7g0257751	71.875	480	135	0	67	546	52	531	749
Msa1329800	MtrunA17_Chr1g0173541	64.835	546	171	4	1	546	1	525	742
Msa1329800	MtrunA17_Chr4g0033371	55.970	536	216	4	24	541	6	539	646
Msa1329800	MtrunA17_Chr5g0441691	54.757	515	227	3	1	515	1	509	576
Msa1329800	MtrunA17_Chr5g0444171	60.407	442	174	1	73	514	92	532	575
Msa1329800	MtrunA17_Chr4g0074811	56.757	481	200	3	39	514	54	531	572
Msa1329800	MtrunA17_Chr8g0387671	60.532	451	175	2	65	514	58	506	568
Msa1329800	MtrunA17_Chr0c02g0489761	53.407	543	231	6	1	531	1	533	566

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1329800	AT1G74740.1	77.338	556	110	4	1	555	1	541	894
Msa1329800	AT1G18890.1	77.240	558	111	3	1	555	1	545	882
Msa1329800	AT5G12480.1	67.877	551	150	7	1	544	1	531	766
Msa1329800	AT3G51850.1	69.301	544	148	5	1	544	1	525	764
Msa1329800	AT5G19450.2	66.909	550	155	6	1	544	1	529	750
Msa1329800	AT5G19450.1	66.909	550	155	6	1	544	1	529	750
Msa1329800	AT3G57530.1	64.663	549	175	4	1	545	1	534	736
Msa1329800	AT2G41860.1	67.331	502	161	2	44	543	24	524	722
Msa1329800	AT2G41860.2	67.131	502	162	2	44	543	24	524	721
Msa1329800	AT3G51850.2	67.671	498	142	5	1	498	1	479	684

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Find 172 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTACCAGCCCAAAA+CGG	0.581403	8_4:-48699711	None:intergenic
AAAGACGCAATCGAATCAAC+AGG	0.438715	8_4:+48698274	Msa1329800:CDS
AAAGCAGTTTCACTTTCTCC+TGG	0.446100	8_4:+48702615	Msa1329800:three_prime_UTR
AAAGCTTCGAACGTTCCATT+AGG	0.412302	8_4:+48700643	Msa1329800:CDS
AACACAAGTGATAACTTAGA+AGG	0.396822	8_4:-48702728	None:intergenic
AACTGAACAAGGGGTTGCTT+TGG	0.374245	8_4:+48699828	Msa1329800:CDS
AAGACGCAATCGAATCAACA+GGG	0.729758	8_4:+48698275	Msa1329800:CDS
AAGCAGTTTCACTTTCTCCT+GGG	0.509557	8_4:+48702616	Msa1329800:three_prime_UTR
AAGCATCCCGGCAATATTCT+AGG	0.310974	8_4:+48702011	Msa1329800:CDS
AAGGAGGGGAGTTGTTTGAT+AGG	0.379478	8_4:+48698710	Msa1329800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTTGATTCTTTCAGAACA+CGG	-	chr8_4:48698420-48698439	None:intergenic	30.0%
CTTGTAAATCAATTTCGAAG+CGG	+	chr8_4:48698545-48698564	Msa1329800:CDS	30.0%
TGAAGTTATTCAAGTGGTTA+TGG	+	chr8_4:48698975-48698994	Msa1329800:intron	30.0%
TGCATAGTTTAGATAGTACT+CGG	+	chr8_4:48699021-48699040	Msa1329800:intron	30.0%
GACATGTTACTAGAAATTCT+TGG	-	chr8_4:48699298-48699317	None:intergenic	30.0%
CAAAAAAGATTGTTCCAACT+AGG	-	chr8_4:48699414-48699433	None:intergenic	30.0%
GTGGCTGTATTTATCTTATT+TGG	+	chr8_4:48699509-48699528	Msa1329800:intron	30.0%
GTAAGTAATCTTGTTCTTTG+TGG	+	chr8_4:48699980-48699999	Msa1329800:intron	30.0%
ATGAAAGATGAAACCTAAGT+TGG	-	chr8_4:48700132-48700151	None:intergenic	30.0%
AACTTAGGTTTCATCTTTCA+TGG	+	chr8_4:48700131-48700150	Msa1329800:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	48698072	48702979	48698072	ID=Msa1329800;Name=Msa1329800
chr8_4	mRNA	48698072	48702979	48698072	ID=Msa1329800-mRNA-1;Parent=Msa1329800;Name=Msa1329800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175\|1\|1\|1\|1\|1\|7\|856\|555
chr8_4	exon	48698072	48698928	48698072	ID=Msa1329800-mRNA-1:exon:14014;Parent=Msa1329800-mRNA-1
chr8_4	exon	48699580	48699723	48699580	ID=Msa1329800-mRNA-1:exon:14015;Parent=Msa1329800-mRNA-1
chr8_4	exon	48699827	48699979	48699827	ID=Msa1329800-mRNA-1:exon:14016;Parent=Msa1329800-mRNA-1
chr8_4	exon	48700617	48700732	48700617	ID=Msa1329800-mRNA-1:exon:14017;Parent=Msa1329800-mRNA-1
chr8_4	exon	48700821	48700988	48700821	ID=Msa1329800-mRNA-1:exon:14018;Parent=Msa1329800-mRNA-1
chr8_4	exon	48701508	48701738	48701508	ID=Msa1329800-mRNA-1:exon:14019;Parent=Msa1329800-mRNA-1
chr8_4	exon	48701950	48702979	48701950	ID=Msa1329800-mRNA-1:exon:14020;Parent=Msa1329800-mRNA-1
chr8_4	five_prime_UTR	48698072	48698246	48698072	ID=Msa1329800-mRNA-1:five_prime_utr;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48698247	48698928	48698247	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48699580	48699723	48699580	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48699827	48699979	48699827	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48700617	48700732	48700617	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48700821	48700988	48700821	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48701508	48701738	48701508	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	CDS	48701950	48702123	48701950	ID=Msa1329800-mRNA-1:cds;Parent=Msa1329800-mRNA-1
chr8_4	three_prime_UTR	48702124	48702979	48702124	ID=Msa1329800-mRNA-1:three_prime_utr;Parent=Msa1329800-mRNA-1

Gene Sequence

>Msa1329800

ATGGGAAATTGCAACACTTGTATAAACAAAGACGCAATCGAATCAACAGGGAAAGCAAAAACATCATCAACAACAGAGTCAAACCATGGCCGGCGAAGAAAAACAAAAGTAAAAGCAAAACCAAAATCAAATCCATATACAGAAGAGTCGTTAACACCAGGAGCAGCAATCCGTGTTCTGAAAGAATCAAATCCACGAAACAGAATCAACGACAAGTACATACTTGGCCGTGAACTTGGCCGTGGAGAATTCGGTATAACATATCTTTGCACAGACAAAGAAACAAAGCAGGAGTTAGCTTGTAAATCAATTTCGAAGCGGAAATTAAGAACGGCAGTAGACGTTGAAGATGTTCGGAGGGAAGTAGCGATCATGTCTACTTTACCGGATCATCCAAATGTGGTGAAGTTGAAGGCTACTTATGAGGATGATGAGAATGTTCATCTTGTGATGGAGTTGTGTGAAGGAGGGGAGTTGTTTGATAGGATTGTTGCGCGAGGGCATTATAGTGAAAGAGCTGCTGCTCATGTTGCTAGGACTATTGCTGAGGTTGTTAGGATGTGTCATGCTAATGGTGTTATGCATCGGGATCTTAAGCCGGAGAATTTTCTTTTTGCTAATAAGAAGGAGAATTCTGTTCTTAAAGCTATTGATTTTGGTTTATCTGTCTTCTTCAAGCCCGGGGAGAGATTTTCGGAGATCGTGGGGAGTCCTTACTATATGGCACCGGAGGTTTTGAAGAGGAATTATGGTCCAGAGGTTGATATATGGAGTGCAGGGGTGATTCTATATATTTTGTTATGCGGGGTGCCTCCGTTTTGGGCTGAAACTGAACAAGGGGTTGCTTTGGCGATTTTGAGGGGGGTAATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCTGACAGTGCTAAGAGCCTTGTGCGTCAGATGTTGGAACCTGATCCTAAAAAACGCTTGACGGCTGAACAGGTGCTTGAACATCCTTGGCTACAAAATGCAAAGAAAGCTTCGAACGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTTTCTTTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCGGAACATTTATCTCTTGAAGAAGTAGAAATAATCAAAGACATGTTTACATTGATGGATACCGATAAAGATGGCAGAATAACATATGAGGAACTGAAGGCTGGTTTGCGGAAGGTCGGCTCACAGCTGGCTGAGCCAGAGATAAAGTTGCTGATGGATGTGGCTGATGTTGATGGGAATGGAGTTCTTGACTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGACGAGCATTTCCGCAAAGCATTCAAGTTTTTTGACAAAGACGAGAGTGGGTATATTGAGTTAAGTGAACTAGAAGCAGCATTAGTGGATGACTTAGGAGAAACTGATACCAATGTACTGAATGAGATCATGCGAGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACGGGAACTGATTGGAGAAAAGCATCCCGGCAATATTCTAGGGAAAGATTCAAGAGCCTGAGCATAAACTTGATGAAGGACGGCTCACTTCAACTTCATGACGGGATAAGTGGTCAAGCTGTTGTGGTTTGA

Protein sequence

>Msa1329800

MGNCNTCINKDAIESTGKAKTSSTTESNHGRRRKTKVKAKPKSNPYTEESLTPGAAIRVLKESNPRNRINDKYILGRELGRGEFGITYLCTDKETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHPNVVKLKATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSLMNRFKKRALRVIAEHLSLEEVEIIKDMFTLMDTDKDGRITYEELKAGLRKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFKFFDKDESGYIELSELEAALVDDLGETDTNVLNEIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV*