AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0442310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442310 MtrunA17_Chr3g0086341 81.737 334 8 3 1 281 1 334 0.0 539
Msa0442310 MtrunA17_Chr3g0086341 95.041 121 6 0 278 398 394 514 2.51e-79 253
Msa0442310 MtrunA17_Chr7g0248041 35.326 184 96 5 107 273 378 555 1.62e-25 108
Msa0442310 MtrunA17_Chr8g0387161 34.759 187 97 6 106 273 82 262 1.40e-21 94.0
Msa0442310 MtrunA17_Chr8g0387141 35.714 196 102 6 114 291 391 580 7.08e-21 94.7
Msa0442310 MtrunA17_Chr8g0387181 37.853 177 87 5 114 273 423 593 7.38e-21 94.7
Msa0442310 MtrunA17_Chr1g0186261 37.288 177 88 7 114 273 383 553 7.56e-21 94.7
Msa0442310 MtrunA17_Chr1g0186281 37.853 177 87 7 114 273 380 550 7.65e-21 94.7
Msa0442310 MtrunA17_Chr1g0186191 36.979 192 98 7 99 273 375 560 1.40e-20 94.0
Msa0442310 MtrunA17_Chr8g0348691 31.285 179 96 6 116 273 76 248 1.27e-18 85.1
Msa0442310 MtrunA17_Chr7g0241681 30.114 176 104 5 110 268 188 361 4.40e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442310 AT1G13880.2 33.180 434 216 16 4 388 14 422 1.23e-57 194
Msa0442310 AT1G13880.1 33.180 434 216 16 4 388 4 412 1.29e-57 194
Msa0442310 AT1G13880.3 33.103 435 216 16 4 388 4 413 1.62e-57 194
Msa0442310 AT1G26580.3 42.222 225 101 5 81 276 33 257 5.35e-50 174
Msa0442310 AT1G26580.2 34.756 328 157 8 1 276 1 323 1.03e-49 175
Msa0442310 AT1G26580.1 34.756 328 157 8 1 276 1 323 1.03e-49 175
Msa0442310 AT2G03470.2 35.913 323 133 11 1 275 1 297 2.33e-49 173
Msa0442310 AT2G03470.1 35.802 324 133 11 1 275 1 298 2.64e-49 173
Msa0442310 AT4G11400.2 36.493 211 110 7 112 306 370 572 2.64e-24 105
Msa0442310 AT4G11400.1 36.493 211 110 7 112 306 370 572 2.64e-24 105
Msa0442310 AT5G04110.1 29.121 182 100 5 113 272 358 532 6.71e-17 82.8
Msa0442310 AT5G04110.3 29.121 182 100 5 113 272 358 532 6.71e-17 82.8
Msa0442310 AT5G04110.2 29.121 182 100 5 113 272 359 533 7.03e-17 82.8
Msa0442310 AT2G46040.3 33.143 175 92 6 118 273 362 530 1.32e-14 75.9
Msa0442310 AT2G46040.1 33.143 175 92 6 118 273 362 530 1.32e-14 75.9
Msa0442310 AT2G46040.2 33.143 175 92 6 118 273 376 544 1.62e-14 75.5

Find 110 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGTATTCCTGCTTCTTCT+TGG 0.231790 3_3:+11844155 Msa0442310:intron
ACTGAAGTACTCATGGAAAA+AGG 0.244769 3_3:-11844233 None:intergenic
CATCCCTCAACAAGAATTTC+TGG 0.247523 3_3:+11844731 Msa0442310:CDS
ATTGAGAAATTCATTGAATT+GGG 0.268674 3_3:+11844622 Msa0442310:CDS
CTCATGAGTTAATGTCCTTA+TGG 0.270357 3_3:-11844290 None:intergenic
CTGAAATATATTGGCCGTTC+TGG 0.274949 3_3:-11844256 None:intergenic
TTCATTGAATTGGGGTTTGC+TGG 0.296184 3_3:+11844631 Msa0442310:CDS
TATCACTATCAGCACTTAAT+AGG 0.298492 3_3:-11844858 None:intergenic
CATCCCAAACATGTTGGTCC+TGG 0.308074 3_3:-11845155 None:intergenic
CAGATTCAAACCTCAATGTT+TGG 0.315295 3_3:+11844410 Msa0442310:intron
GATTGAGAAATTCATTGAAT+TGG 0.317579 3_3:+11844621 Msa0442310:CDS
CGCTGGGACCTGCATGCTTC+GGG 0.328924 3_3:-11843842 None:intergenic
AAGCCCAGGACCAACATGTT+TGG 0.344788 3_3:+11845151 Msa0442310:CDS
TGAATTGGGGTTTGCTGGCA+TGG 0.361365 3_3:+11844636 Msa0442310:CDS
AGGTATTCCTGCTTCTTCTT+GGG 0.363279 3_3:+11844156 Msa0442310:intron
AGCCCAGGACCAACATGTTT+GGG 0.368080 3_3:+11845152 Msa0442310:CDS
AGGAGAATGTTCAAGGAGTA+TGG 0.375340 3_3:-11844323 None:intergenic
CGTTCTGGACTGAAATATAT+TGG 0.377694 3_3:-11844265 None:intergenic
TCGCTGGGACCTGCATGCTT+CGG 0.383524 3_3:-11843843 None:intergenic
AGATTCAAACCTCAATGTTT+GGG 0.386204 3_3:+11844411 Msa0442310:intron
GAGTGGGAATGGTGATCATT+GGG 0.407252 3_3:+11845245 Msa0442310:CDS
AAATTCTTGTTGAGGGATGC+TGG 0.410628 3_3:-11844727 None:intergenic
CACCTGAAGTCTTAGCCAAA+TGG 0.412401 3_3:-11843914 None:intergenic
GAAAGCGAGCTGAGCAGAAC+AGG 0.412737 3_3:+11844830 Msa0442310:CDS
ATGTGTAAGACAACATATAA+TGG 0.417704 3_3:+11844567 Msa0442310:CDS
TGGGGCAGTAACTATAATAA+TGG 0.418652 3_3:+11845264 Msa0442310:CDS
TCATGAGTTAATGTCCTTAT+GGG 0.424228 3_3:-11844289 None:intergenic
AATGTCCTTATGGGTCGTTC+TGG 0.428131 3_3:-11844280 None:intergenic
ATCCCAAACATGTTGGTCCT+GGG 0.430334 3_3:-11845154 None:intergenic
GATGCACCAGGGTGGGATCC+TGG 0.430640 3_3:+11845330 Msa0442310:CDS
ATCATCTTCGGTAGTGCAAC+TGG 0.442795 3_3:-11844182 None:intergenic
TTCTGAACGGTGATCATCTT+CGG 0.442890 3_3:-11844194 None:intergenic
ACCCATTTGGCTAAGACTTC+AGG 0.445192 3_3:+11843912 Msa0442310:CDS
AGAGTGGGAATGGTGATCAT+TGG 0.452381 3_3:+11845244 Msa0442310:CDS
TGATCAGCTCCAACTGATAC+AGG 0.454985 3_3:-11844352 None:intergenic
CCCTCATCTGATTCAAGCCC+AGG 0.459996 3_3:+11845137 Msa0442310:CDS
GTTCCAGAAATTCTTGTTGA+GGG 0.466806 3_3:-11844734 None:intergenic
ACGCTAGATAATTCCATCTC+AGG 0.474272 3_3:-11844484 None:intergenic
TCTAGCGTTGATGATGAAGT+TGG 0.475559 3_3:+11844499 Msa0442310:CDS
ACCTGAAGTCTTAGCCAAAT+GGG 0.476227 3_3:-11843913 None:intergenic
ATCTTGCTCTAAAAGTAAGA+TGG 0.482487 3_3:+11845359 Msa0442310:CDS
AGCATCTCCTCAGCATCAAA+AGG 0.482810 3_3:-11843801 None:intergenic
CAATGAATTTCTCAATCCCA+AGG 0.484694 3_3:-11844615 None:intergenic
TGATGATTGCGACACCCATT+TGG 0.484841 3_3:+11843899 Msa0442310:CDS
CTGGAGCATTGTGATGCACC+AGG 0.488708 3_3:+11845318 Msa0442310:CDS
CATCCCCATCCCAAACATTG+AGG 0.498295 3_3:-11844420 None:intergenic
CAAACCTCAATGTTTGGGAT+GGG 0.499908 3_3:+11844416 Msa0442310:CDS
CTTGATATGCATCACTCTAG+TGG 0.500136 3_3:+11845111 Msa0442310:CDS
TGGGTGTCGCAATCATCATC+AGG 0.505398 3_3:-11843894 None:intergenic
GAATTGGGGTTTGCTGGCAT+GGG 0.506212 3_3:+11844637 Msa0442310:CDS
ATGACATGGGAGTTGCTTCA+AGG 0.507286 3_3:+11845208 Msa0442310:CDS
TGTTAACGGTAGAAAATCGC+TGG 0.507449 3_3:-11843859 None:intergenic
TCAAGCTGATGTTCCTGCAT+GGG 0.508514 3_3:+11844375 Msa0442310:CDS
GATAATTCCATCTCAGGCAT+AGG 0.519691 3_3:-11844478 None:intergenic
TTGAGAAATTCATTGAATTG+GGG 0.521028 3_3:+11844623 Msa0442310:CDS
GTTGATGATGAAGTTGGAAA+AGG 0.521336 3_3:+11844505 Msa0442310:CDS
TCAAACCTCAATGTTTGGGA+TGG 0.524692 3_3:+11844415 Msa0442310:CDS
TTAGAGCAAGATACAAAGCC+AGG 0.525570 3_3:-11845348 None:intergenic
ACCATTCCCACTCTTCACCT+TGG 0.525767 3_3:-11845235 None:intergenic
TGATGCTGAGGAGATGCTTG+AGG 0.526167 3_3:+11843806 Msa0442310:CDS
CCTCGCAAGCCTGTATCAGT+TGG 0.530589 3_3:+11844343 Msa0442310:CDS
TGACATGGGAGTTGCTTCAA+GGG 0.532666 3_3:+11845209 Msa0442310:CDS
CCCATGTCATGTGATGTGTA+TGG 0.535319 3_3:-11845195 None:intergenic
CAAGCTGATGTTCCTGCATG+GGG 0.538451 3_3:+11844376 Msa0442310:CDS
TATTATCCCTATGCCTGAGA+TGG 0.538511 3_3:+11844471 Msa0442310:CDS
CTCAGGCATAGGGATAATAC+AGG 0.539552 3_3:-11844467 None:intergenic
TGCTTTCTTGCAGGCAACAA+TGG 0.540913 3_3:+11843767 Msa0442310:exon
ATAATTCCATCTCAGGCATA+GGG 0.542120 3_3:-11844477 None:intergenic
AAACCTCAATGTTTGGGATG+GGG 0.542867 3_3:+11844417 Msa0442310:CDS
ACCAAGGTGAAGAGTGGGAA+TGG 0.543330 3_3:+11845234 Msa0442310:CDS
TTCAAACACCCGAAGCATGC+AGG 0.544378 3_3:+11843834 Msa0442310:CDS
GCTTGCGAGGAGAATGTTCA+AGG 0.553211 3_3:-11844330 None:intergenic
TCAGTCCAGAACGACCCATA+AGG 0.556681 3_3:+11844275 Msa0442310:CDS
AGTTCCAGAAATTCTTGTTG+AGG 0.557435 3_3:-11844735 None:intergenic
ATCAAGCTGATGTTCCTGCA+TGG 0.557524 3_3:+11844374 Msa0442310:CDS
GTTCTGGACTGAAGTACTCA+TGG 0.558958 3_3:-11844240 None:intergenic
GTAAGCAATGGTTACAGCCA+AGG 0.561471 3_3:+11845288 Msa0442310:CDS
GTTCAAGGAGTATGGAATAG+AGG 0.561760 3_3:-11844315 None:intergenic
TATAATAATGGAGTAAGCAA+TGG 0.563529 3_3:+11845276 Msa0442310:CDS
CACTATCAGCACTTAATAGG+TGG 0.573148 3_3:-11844855 None:intergenic
TTACAGCCAAGGGTATGTGC+TGG 0.575897 3_3:+11845299 Msa0442310:CDS
TCCATACACATCACATGACA+TGG 0.582605 3_3:+11845194 Msa0442310:CDS
AATGCTCCAGCACATACCCT+TGG 0.585409 3_3:-11845305 None:intergenic
AGGGAGACCAAGGTGAAGAG+TGG 0.588865 3_3:+11845228 Msa0442310:CDS
TCTTCTATCATGCTACATGT+AGG 0.594709 3_3:-11845390 None:intergenic
GGGAGACCAAGGTGAAGAGT+GGG 0.600028 3_3:+11845229 Msa0442310:CDS
CTGATAGTGATAATGATGAA+TGG 0.603537 3_3:+11844869 Msa0442310:CDS
TCCTGGGCTTGAATCAGATG+AGG 0.606024 3_3:-11845138 None:intergenic
CCTGGGCTTGAATCAGATGA+GGG 0.606854 3_3:-11845137 None:intergenic
AATGAATTTCTCAATCCCAA+GGG 0.607074 3_3:-11844614 None:intergenic
TAAGCAATGGTTACAGCCAA+GGG 0.614655 3_3:+11845289 Msa0442310:CDS
GATGTATAGGCTGTTCTGAA+CGG 0.621550 3_3:-11844207 None:intergenic
GATTGTAGCTGCGAGGACAG+TGG 0.623911 3_3:+11844535 Msa0442310:CDS
CTGGTGGCCCAAGAAGAAGC+AGG 0.631250 3_3:-11844163 None:intergenic
AGTTGCTTCAAGGGAGACCA+AGG 0.631504 3_3:+11845218 Msa0442310:CDS
CCAACTGATACAGGCTTGCG+AGG 0.632606 3_3:-11844343 None:intergenic
CATAAGGACATTAACTCATG+AGG 0.642135 3_3:+11844291 Msa0442310:CDS
GCATTGTGATGCACCAGGGT+GGG 0.646215 3_3:+11845323 Msa0442310:CDS
GTTAACGGTAGAAAATCGCT+GGG 0.649982 3_3:-11843858 None:intergenic
ACAAAGCCAGGATCCCACCC+TGG 0.650732 3_3:-11845336 None:intergenic
ATCTTCGGTAGTGCAACTGG+TGG 0.650760 3_3:-11844179 None:intergenic
TACATGTAGCATGATAGAAG+AGG 0.651894 3_3:+11845392 Msa0442310:CDS
ATGAGTACTTCAGTCCAGAA+CGG 0.667987 3_3:+11844242 Msa0442310:CDS
TGGAGCATTGTGATGCACCA+GGG 0.681363 3_3:+11845319 Msa0442310:CDS
CTGGGCTTGAATCAGATGAG+GGG 0.684489 3_3:-11845136 None:intergenic
AGTGGGAATGGTGATCATTG+GGG 0.687140 3_3:+11845246 Msa0442310:CDS
CCATACACATCACATGACAT+GGG 0.689211 3_3:+11845195 Msa0442310:CDS
AGCATTGTGATGCACCAGGG+TGG 0.699405 3_3:+11845322 Msa0442310:CDS
AGTGATAATGATGAATGGCA+AGG 0.715180 3_3:+11844874 Msa0442310:CDS
AAGAACTGATTGTAGCTGCG+AGG 0.720002 3_3:+11844528 Msa0442310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATGTAATATACATTTCA+AGG + chr3_3:11843975-11843994 Msa0442310:intron 20.0%
!! AAAAAACTATTAAAAACCCT+TGG + chr3_3:11844598-11844617 Msa0442310:CDS 20.0%
!! AAAAACTATTAAAAACCCTT+GGG + chr3_3:11844599-11844618 Msa0442310:CDS 20.0%
!! ATTGAGAAATTCATTGAATT+GGG + chr3_3:11844622-11844641 Msa0442310:CDS 20.0%
!! ACTATGTAATATACATTTCA+AGG + chr3_3:11843975-11843994 Msa0442310:intron 20.0%
!! AAAAAACTATTAAAAACCCT+TGG + chr3_3:11844598-11844617 Msa0442310:CDS 20.0%
!! AAAAACTATTAAAAACCCTT+GGG + chr3_3:11844599-11844618 Msa0442310:CDS 20.0%
!! ATTGAGAAATTCATTGAATT+GGG + chr3_3:11844622-11844641 Msa0442310:CDS 20.0%
! ATGTGTAAGACAACATATAA+TGG + chr3_3:11844567-11844586 Msa0442310:CDS 25.0%
! GATTGAGAAATTCATTGAAT+TGG + chr3_3:11844621-11844640 Msa0442310:CDS 25.0%
! TTGAGAAATTCATTGAATTG+GGG + chr3_3:11844623-11844642 Msa0442310:CDS 25.0%
! GATGAAAATTGTGATGTTAA+TGG + chr3_3:11845036-11845055 Msa0442310:intron 25.0%
!! TATAATAATGGAGTAAGCAA+TGG + chr3_3:11845276-11845295 Msa0442310:CDS 25.0%
! ATGTGTAAGACAACATATAA+TGG + chr3_3:11844567-11844586 Msa0442310:CDS 25.0%
! GATTGAGAAATTCATTGAAT+TGG + chr3_3:11844621-11844640 Msa0442310:CDS 25.0%
! TTGAGAAATTCATTGAATTG+GGG + chr3_3:11844623-11844642 Msa0442310:CDS 25.0%
! GATGAAAATTGTGATGTTAA+TGG + chr3_3:11845036-11845055 Msa0442310:intron 25.0%
!! TATAATAATGGAGTAAGCAA+TGG + chr3_3:11845276-11845295 Msa0442310:CDS 25.0%
GGAAAAACAGATTCTGTTAA+CGG - chr3_3:11843876-11843895 None:intergenic 30.0%
! GTTTTTAATCTTGTGCAGTT+TGG + chr3_3:11843945-11843964 Msa0442310:intron 30.0%
TCATGAGTTAATGTCCTTAT+GGG - chr3_3:11844292-11844311 None:intergenic 30.0%
AGATTCAAACCTCAATGTTT+GGG + chr3_3:11844411-11844430 Msa0442310:intron 30.0%
TGAAGCTGAAAAAAGAATGA+TGG + chr3_3:11844441-11844460 Msa0442310:CDS 30.0%
GAAGCTGAAAAAAGAATGAT+GGG + chr3_3:11844442-11844461 Msa0442310:CDS 30.0%
AAGCTGAAAAAAGAATGATG+GGG + chr3_3:11844443-11844462 Msa0442310:CDS 30.0%
AATGAATTTCTCAATCCCAA+GGG - chr3_3:11844617-11844636 None:intergenic 30.0%
AGATGAACATCTATTTCACA+AGG + chr3_3:11844690-11844709 Msa0442310:intron 30.0%
TATCACTATCAGCACTTAAT+AGG - chr3_3:11844861-11844880 None:intergenic 30.0%
! CTGATAGTGATAATGATGAA+TGG + chr3_3:11844869-11844888 Msa0442310:CDS 30.0%
CAAGTATCATCTTCATAGAT+GGG - chr3_3:11844958-11844977 None:intergenic 30.0%
ACAAGTATCATCTTCATAGA+TGG - chr3_3:11844959-11844978 None:intergenic 30.0%
GAATATTAGATCATACCAAG+AGG + chr3_3:11845058-11845077 Msa0442310:intron 30.0%
!! ATCTTGCTCTAAAAGTAAGA+TGG + chr3_3:11845359-11845378 Msa0442310:CDS 30.0%
GGAAAAACAGATTCTGTTAA+CGG - chr3_3:11843876-11843895 None:intergenic 30.0%
! GTTTTTAATCTTGTGCAGTT+TGG + chr3_3:11843945-11843964 Msa0442310:intron 30.0%
TCATGAGTTAATGTCCTTAT+GGG - chr3_3:11844292-11844311 None:intergenic 30.0%
AGATTCAAACCTCAATGTTT+GGG + chr3_3:11844411-11844430 Msa0442310:intron 30.0%
TGAAGCTGAAAAAAGAATGA+TGG + chr3_3:11844441-11844460 Msa0442310:CDS 30.0%
GAAGCTGAAAAAAGAATGAT+GGG + chr3_3:11844442-11844461 Msa0442310:CDS 30.0%
AAGCTGAAAAAAGAATGATG+GGG + chr3_3:11844443-11844462 Msa0442310:CDS 30.0%
AATGAATTTCTCAATCCCAA+GGG - chr3_3:11844617-11844636 None:intergenic 30.0%
AGATGAACATCTATTTCACA+AGG + chr3_3:11844690-11844709 Msa0442310:intron 30.0%
TATCACTATCAGCACTTAAT+AGG - chr3_3:11844861-11844880 None:intergenic 30.0%
! CTGATAGTGATAATGATGAA+TGG + chr3_3:11844869-11844888 Msa0442310:CDS 30.0%
CAAGTATCATCTTCATAGAT+GGG - chr3_3:11844958-11844977 None:intergenic 30.0%
ACAAGTATCATCTTCATAGA+TGG - chr3_3:11844959-11844978 None:intergenic 30.0%
GAATATTAGATCATACCAAG+AGG + chr3_3:11845058-11845077 Msa0442310:intron 30.0%
!! ATCTTGCTCTAAAAGTAAGA+TGG + chr3_3:11845359-11845378 Msa0442310:CDS 30.0%
GTCTACGTTGTAATTCATAG+AGG + chr3_3:11844039-11844058 Msa0442310:intron 35.0%
ACGTTGTAATTCATAGAGGA+AGG + chr3_3:11844043-11844062 Msa0442310:intron 35.0%
TGGAAAAAGGGAAGATGTAT+AGG - chr3_3:11844223-11844242 None:intergenic 35.0%
! CTGAAGTACTCATGGAAAAA+GGG - chr3_3:11844235-11844254 None:intergenic 35.0%
! ACTGAAGTACTCATGGAAAA+AGG - chr3_3:11844236-11844255 None:intergenic 35.0%
! CGTTCTGGACTGAAATATAT+TGG - chr3_3:11844268-11844287 None:intergenic 35.0%
CTCATGAGTTAATGTCCTTA+TGG - chr3_3:11844293-11844312 None:intergenic 35.0%
CATAAGGACATTAACTCATG+AGG + chr3_3:11844291-11844310 Msa0442310:CDS 35.0%
CAGATTCAAACCTCAATGTT+TGG + chr3_3:11844410-11844429 Msa0442310:intron 35.0%
ATAATTCCATCTCAGGCATA+GGG - chr3_3:11844480-11844499 None:intergenic 35.0%
!! GTTGATGATGAAGTTGGAAA+AGG + chr3_3:11844505-11844524 Msa0442310:CDS 35.0%
CAATGAATTTCTCAATCCCA+AGG - chr3_3:11844618-11844637 None:intergenic 35.0%
GTTCCAGAAATTCTTGTTGA+GGG - chr3_3:11844737-11844756 None:intergenic 35.0%
AGTTCCAGAAATTCTTGTTG+AGG - chr3_3:11844738-11844757 None:intergenic 35.0%
! TTTTCCTTCACGAAGCAAAA+AGG + chr3_3:11844771-11844790 Msa0442310:CDS 35.0%
! AGTGATAATGATGAATGGCA+AGG + chr3_3:11844874-11844893 Msa0442310:CDS 35.0%
!! CTTTTTCATCCCAAACATGT+TGG - chr3_3:11845164-11845183 None:intergenic 35.0%
TGGGGCAGTAACTATAATAA+TGG + chr3_3:11845264-11845283 Msa0442310:CDS 35.0%
TCTTCTATCATGCTACATGT+AGG - chr3_3:11845393-11845412 None:intergenic 35.0%
TACATGTAGCATGATAGAAG+AGG + chr3_3:11845392-11845411 Msa0442310:CDS 35.0%
! AGCATGATAGAAGAGGTTTT+TGG + chr3_3:11845399-11845418 Msa0442310:CDS 35.0%
!! ATAGAAGAGGTTTTTGGAGA+TGG + chr3_3:11845405-11845424 Msa0442310:CDS 35.0%
GTCTACGTTGTAATTCATAG+AGG + chr3_3:11844039-11844058 Msa0442310:intron 35.0%
ACGTTGTAATTCATAGAGGA+AGG + chr3_3:11844043-11844062 Msa0442310:intron 35.0%
TGGAAAAAGGGAAGATGTAT+AGG - chr3_3:11844223-11844242 None:intergenic 35.0%
! CTGAAGTACTCATGGAAAAA+GGG - chr3_3:11844235-11844254 None:intergenic 35.0%
! ACTGAAGTACTCATGGAAAA+AGG - chr3_3:11844236-11844255 None:intergenic 35.0%
! CGTTCTGGACTGAAATATAT+TGG - chr3_3:11844268-11844287 None:intergenic 35.0%
CTCATGAGTTAATGTCCTTA+TGG - chr3_3:11844293-11844312 None:intergenic 35.0%
CATAAGGACATTAACTCATG+AGG + chr3_3:11844291-11844310 Msa0442310:CDS 35.0%
CAGATTCAAACCTCAATGTT+TGG + chr3_3:11844410-11844429 Msa0442310:intron 35.0%
ATAATTCCATCTCAGGCATA+GGG - chr3_3:11844480-11844499 None:intergenic 35.0%
!! GTTGATGATGAAGTTGGAAA+AGG + chr3_3:11844505-11844524 Msa0442310:CDS 35.0%
CAATGAATTTCTCAATCCCA+AGG - chr3_3:11844618-11844637 None:intergenic 35.0%
GTTCCAGAAATTCTTGTTGA+GGG - chr3_3:11844737-11844756 None:intergenic 35.0%
AGTTCCAGAAATTCTTGTTG+AGG - chr3_3:11844738-11844757 None:intergenic 35.0%
! TTTTCCTTCACGAAGCAAAA+AGG + chr3_3:11844771-11844790 Msa0442310:CDS 35.0%
! AGTGATAATGATGAATGGCA+AGG + chr3_3:11844874-11844893 Msa0442310:CDS 35.0%
!! CTTTTTCATCCCAAACATGT+TGG - chr3_3:11845164-11845183 None:intergenic 35.0%
TGGGGCAGTAACTATAATAA+TGG + chr3_3:11845264-11845283 Msa0442310:CDS 35.0%
TCTTCTATCATGCTACATGT+AGG - chr3_3:11845393-11845412 None:intergenic 35.0%
TACATGTAGCATGATAGAAG+AGG + chr3_3:11845392-11845411 Msa0442310:CDS 35.0%
! AGCATGATAGAAGAGGTTTT+TGG + chr3_3:11845399-11845418 Msa0442310:CDS 35.0%
!! ATAGAAGAGGTTTTTGGAGA+TGG + chr3_3:11845405-11845424 Msa0442310:CDS 35.0%
GTTAACGGTAGAAAATCGCT+GGG - chr3_3:11843861-11843880 None:intergenic 40.0%
TGTTAACGGTAGAAAATCGC+TGG - chr3_3:11843862-11843881 None:intergenic 40.0%
ACCTGAAGTCTTAGCCAAAT+GGG - chr3_3:11843916-11843935 None:intergenic 40.0%
ATTTGGCTAAGACTTCAGGT+GGG + chr3_3:11843916-11843935 Msa0442310:intron 40.0%
ATAGAGGAAGGATATGCACA+AGG + chr3_3:11844055-11844074 Msa0442310:intron 40.0%
TAGGTATTCCTGCTTCTTCT+TGG + chr3_3:11844155-11844174 Msa0442310:intron 40.0%
AGGTATTCCTGCTTCTTCTT+GGG + chr3_3:11844156-11844175 Msa0442310:intron 40.0%
TTCTGAACGGTGATCATCTT+CGG - chr3_3:11844197-11844216 None:intergenic 40.0%
! GATGTATAGGCTGTTCTGAA+CGG - chr3_3:11844210-11844229 None:intergenic 40.0%
ATGAGTACTTCAGTCCAGAA+CGG + chr3_3:11844242-11844261 Msa0442310:CDS 40.0%
CTGAAATATATTGGCCGTTC+TGG - chr3_3:11844259-11844278 None:intergenic 40.0%
! GTTCAAGGAGTATGGAATAG+AGG - chr3_3:11844318-11844337 None:intergenic 40.0%
AGGAGAATGTTCAAGGAGTA+TGG - chr3_3:11844326-11844345 None:intergenic 40.0%
TCAAACCTCAATGTTTGGGA+TGG + chr3_3:11844415-11844434 Msa0442310:CDS 40.0%
! CAAACCTCAATGTTTGGGAT+GGG + chr3_3:11844416-11844435 Msa0442310:CDS 40.0%
! AAACCTCAATGTTTGGGATG+GGG + chr3_3:11844417-11844436 Msa0442310:CDS 40.0%
TATTATCCCTATGCCTGAGA+TGG + chr3_3:11844471-11844490 Msa0442310:CDS 40.0%
GATAATTCCATCTCAGGCAT+AGG - chr3_3:11844481-11844500 None:intergenic 40.0%
ACGCTAGATAATTCCATCTC+AGG - chr3_3:11844487-11844506 None:intergenic 40.0%
!! TCTAGCGTTGATGATGAAGT+TGG + chr3_3:11844499-11844518 Msa0442310:CDS 40.0%
TTCATTGAATTGGGGTTTGC+TGG + chr3_3:11844631-11844650 Msa0442310:CDS 40.0%
AAATTCTTGTTGAGGGATGC+TGG - chr3_3:11844730-11844749 None:intergenic 40.0%
CATCCCTCAACAAGAATTTC+TGG + chr3_3:11844731-11844750 Msa0442310:CDS 40.0%
GCTTCGTGAAGGAAAAACAA+TGG - chr3_3:11844767-11844786 None:intergenic 40.0%
! ATCTCCTTTTTGCTTCGTGA+AGG - chr3_3:11844778-11844797 None:intergenic 40.0%
CACTATCAGCACTTAATAGG+TGG - chr3_3:11844858-11844877 None:intergenic 40.0%
AGAATCCTCATCTTCCTCAT+GGG - chr3_3:11844923-11844942 None:intergenic 40.0%
CCTCTAAGTGATCATCATTG+CGG - chr3_3:11844993-11845012 None:intergenic 40.0%
CATACCAAGAGGAACATTGA+TGG + chr3_3:11845069-11845088 Msa0442310:intron 40.0%
ATCACCATCAATGTTCCTCT+TGG - chr3_3:11845076-11845095 None:intergenic 40.0%
CTTGATATGCATCACTCTAG+TGG + chr3_3:11845111-11845130 Msa0442310:CDS 40.0%
TCCATACACATCACATGACA+TGG + chr3_3:11845194-11845213 Msa0442310:CDS 40.0%
CCATACACATCACATGACAT+GGG + chr3_3:11845195-11845214 Msa0442310:CDS 40.0%
TAAGCAATGGTTACAGCCAA+GGG + chr3_3:11845289-11845308 Msa0442310:CDS 40.0%
TTAGAGCAAGATACAAAGCC+AGG - chr3_3:11845351-11845370 None:intergenic 40.0%
GTTAACGGTAGAAAATCGCT+GGG - chr3_3:11843861-11843880 None:intergenic 40.0%
TGTTAACGGTAGAAAATCGC+TGG - chr3_3:11843862-11843881 None:intergenic 40.0%
ACCTGAAGTCTTAGCCAAAT+GGG - chr3_3:11843916-11843935 None:intergenic 40.0%
ATTTGGCTAAGACTTCAGGT+GGG + chr3_3:11843916-11843935 Msa0442310:intron 40.0%
ATAGAGGAAGGATATGCACA+AGG + chr3_3:11844055-11844074 Msa0442310:intron 40.0%
TAGGTATTCCTGCTTCTTCT+TGG + chr3_3:11844155-11844174 Msa0442310:intron 40.0%
AGGTATTCCTGCTTCTTCTT+GGG + chr3_3:11844156-11844175 Msa0442310:intron 40.0%
TTCTGAACGGTGATCATCTT+CGG - chr3_3:11844197-11844216 None:intergenic 40.0%
! GATGTATAGGCTGTTCTGAA+CGG - chr3_3:11844210-11844229 None:intergenic 40.0%
ATGAGTACTTCAGTCCAGAA+CGG + chr3_3:11844242-11844261 Msa0442310:CDS 40.0%
CTGAAATATATTGGCCGTTC+TGG - chr3_3:11844259-11844278 None:intergenic 40.0%
! GTTCAAGGAGTATGGAATAG+AGG - chr3_3:11844318-11844337 None:intergenic 40.0%
AGGAGAATGTTCAAGGAGTA+TGG - chr3_3:11844326-11844345 None:intergenic 40.0%
TCAAACCTCAATGTTTGGGA+TGG + chr3_3:11844415-11844434 Msa0442310:CDS 40.0%
! CAAACCTCAATGTTTGGGAT+GGG + chr3_3:11844416-11844435 Msa0442310:CDS 40.0%
! AAACCTCAATGTTTGGGATG+GGG + chr3_3:11844417-11844436 Msa0442310:CDS 40.0%
TATTATCCCTATGCCTGAGA+TGG + chr3_3:11844471-11844490 Msa0442310:CDS 40.0%
GATAATTCCATCTCAGGCAT+AGG - chr3_3:11844481-11844500 None:intergenic 40.0%
ACGCTAGATAATTCCATCTC+AGG - chr3_3:11844487-11844506 None:intergenic 40.0%
!! TCTAGCGTTGATGATGAAGT+TGG + chr3_3:11844499-11844518 Msa0442310:CDS 40.0%
TTCATTGAATTGGGGTTTGC+TGG + chr3_3:11844631-11844650 Msa0442310:CDS 40.0%
AAATTCTTGTTGAGGGATGC+TGG - chr3_3:11844730-11844749 None:intergenic 40.0%
CATCCCTCAACAAGAATTTC+TGG + chr3_3:11844731-11844750 Msa0442310:CDS 40.0%
GCTTCGTGAAGGAAAAACAA+TGG - chr3_3:11844767-11844786 None:intergenic 40.0%
! ATCTCCTTTTTGCTTCGTGA+AGG - chr3_3:11844778-11844797 None:intergenic 40.0%
CACTATCAGCACTTAATAGG+TGG - chr3_3:11844858-11844877 None:intergenic 40.0%
AGAATCCTCATCTTCCTCAT+GGG - chr3_3:11844923-11844942 None:intergenic 40.0%
CCTCTAAGTGATCATCATTG+CGG - chr3_3:11844993-11845012 None:intergenic 40.0%
CATACCAAGAGGAACATTGA+TGG + chr3_3:11845069-11845088 Msa0442310:intron 40.0%
ATCACCATCAATGTTCCTCT+TGG - chr3_3:11845076-11845095 None:intergenic 40.0%
CTTGATATGCATCACTCTAG+TGG + chr3_3:11845111-11845130 Msa0442310:CDS 40.0%
TCCATACACATCACATGACA+TGG + chr3_3:11845194-11845213 Msa0442310:CDS 40.0%
CCATACACATCACATGACAT+GGG + chr3_3:11845195-11845214 Msa0442310:CDS 40.0%
TAAGCAATGGTTACAGCCAA+GGG + chr3_3:11845289-11845308 Msa0442310:CDS 40.0%
TTAGAGCAAGATACAAAGCC+AGG - chr3_3:11845351-11845370 None:intergenic 40.0%
TGCTTTCTTGCAGGCAACAA+TGG + chr3_3:11843767-11843786 Msa0442310:exon 45.0%
! GAAACGTCCTTTTGATGCTG+AGG + chr3_3:11843794-11843813 Msa0442310:CDS 45.0%
AGCATCTCCTCAGCATCAAA+AGG - chr3_3:11843804-11843823 None:intergenic 45.0%
TGATGATTGCGACACCCATT+TGG + chr3_3:11843899-11843918 Msa0442310:CDS 45.0%
ACCCATTTGGCTAAGACTTC+AGG + chr3_3:11843912-11843931 Msa0442310:CDS 45.0%
CACCTGAAGTCTTAGCCAAA+TGG - chr3_3:11843917-11843936 None:intergenic 45.0%
CATTTGGCTAAGACTTCAGG+TGG + chr3_3:11843915-11843934 Msa0442310:intron 45.0%
!! CTTGCTGTTGAAACTTGCGA+TGG + chr3_3:11844100-11844119 Msa0442310:intron 45.0%
GAAGCAGGAATACCTATCAC+AGG - chr3_3:11844151-11844170 None:intergenic 45.0%
ATCATCTTCGGTAGTGCAAC+TGG - chr3_3:11844185-11844204 None:intergenic 45.0%
! GTTCTGGACTGAAGTACTCA+TGG - chr3_3:11844243-11844262 None:intergenic 45.0%
AATGTCCTTATGGGTCGTTC+TGG - chr3_3:11844283-11844302 None:intergenic 45.0%
TGATCAGCTCCAACTGATAC+AGG - chr3_3:11844355-11844374 None:intergenic 45.0%
ATCAAGCTGATGTTCCTGCA+TGG + chr3_3:11844374-11844393 Msa0442310:CDS 45.0%
TCAAGCTGATGTTCCTGCAT+GGG + chr3_3:11844375-11844394 Msa0442310:CDS 45.0%
! TTCCTGCATGGGGTTTTTCT+GGG + chr3_3:11844386-11844405 Msa0442310:intron 45.0%
CTCAGGCATAGGGATAATAC+AGG - chr3_3:11844470-11844489 None:intergenic 45.0%
AAGAACTGATTGTAGCTGCG+AGG + chr3_3:11844528-11844547 Msa0442310:CDS 45.0%
GAGAACAAGTGGCTCAAAAG+TGG + chr3_3:11844659-11844678 Msa0442310:intron 45.0%
CAATGAAGTTGCTACCCATG+AGG + chr3_3:11844906-11844925 Msa0442310:intron 45.0%
CAGAATCCTCATCTTCCTCA+TGG - chr3_3:11844924-11844943 None:intergenic 45.0%
CCGCAATGATGATCACTTAG+AGG + chr3_3:11844990-11845009 Msa0442310:intron 45.0%
ATCCCAAACATGTTGGTCCT+GGG - chr3_3:11845157-11845176 None:intergenic 45.0%
CCCATGTCATGTGATGTGTA+TGG - chr3_3:11845198-11845217 None:intergenic 45.0%
ATGACATGGGAGTTGCTTCA+AGG + chr3_3:11845208-11845227 Msa0442310:CDS 45.0%
TGACATGGGAGTTGCTTCAA+GGG + chr3_3:11845209-11845228 Msa0442310:CDS 45.0%
AGAGTGGGAATGGTGATCAT+TGG + chr3_3:11845244-11845263 Msa0442310:CDS 45.0%
GAGTGGGAATGGTGATCATT+GGG + chr3_3:11845245-11845264 Msa0442310:CDS 45.0%
AGTGGGAATGGTGATCATTG+GGG + chr3_3:11845246-11845265 Msa0442310:CDS 45.0%
GTAAGCAATGGTTACAGCCA+AGG + chr3_3:11845288-11845307 Msa0442310:CDS 45.0%
!! AGGTTTTTGGAGATGGACGA+AGG + chr3_3:11845412-11845431 Msa0442310:CDS 45.0%
TGCTTTCTTGCAGGCAACAA+TGG + chr3_3:11843767-11843786 Msa0442310:exon 45.0%
! GAAACGTCCTTTTGATGCTG+AGG + chr3_3:11843794-11843813 Msa0442310:CDS 45.0%
AGCATCTCCTCAGCATCAAA+AGG - chr3_3:11843804-11843823 None:intergenic 45.0%
TGATGATTGCGACACCCATT+TGG + chr3_3:11843899-11843918 Msa0442310:CDS 45.0%
ACCCATTTGGCTAAGACTTC+AGG + chr3_3:11843912-11843931 Msa0442310:CDS 45.0%
CACCTGAAGTCTTAGCCAAA+TGG - chr3_3:11843917-11843936 None:intergenic 45.0%
CATTTGGCTAAGACTTCAGG+TGG + chr3_3:11843915-11843934 Msa0442310:intron 45.0%
!! CTTGCTGTTGAAACTTGCGA+TGG + chr3_3:11844100-11844119 Msa0442310:intron 45.0%
GAAGCAGGAATACCTATCAC+AGG - chr3_3:11844151-11844170 None:intergenic 45.0%
ATCATCTTCGGTAGTGCAAC+TGG - chr3_3:11844185-11844204 None:intergenic 45.0%
! GTTCTGGACTGAAGTACTCA+TGG - chr3_3:11844243-11844262 None:intergenic 45.0%
AATGTCCTTATGGGTCGTTC+TGG - chr3_3:11844283-11844302 None:intergenic 45.0%
TGATCAGCTCCAACTGATAC+AGG - chr3_3:11844355-11844374 None:intergenic 45.0%
ATCAAGCTGATGTTCCTGCA+TGG + chr3_3:11844374-11844393 Msa0442310:CDS 45.0%
TCAAGCTGATGTTCCTGCAT+GGG + chr3_3:11844375-11844394 Msa0442310:CDS 45.0%
! TTCCTGCATGGGGTTTTTCT+GGG + chr3_3:11844386-11844405 Msa0442310:intron 45.0%
CTCAGGCATAGGGATAATAC+AGG - chr3_3:11844470-11844489 None:intergenic 45.0%
AAGAACTGATTGTAGCTGCG+AGG + chr3_3:11844528-11844547 Msa0442310:CDS 45.0%
GAGAACAAGTGGCTCAAAAG+TGG + chr3_3:11844659-11844678 Msa0442310:intron 45.0%
CAATGAAGTTGCTACCCATG+AGG + chr3_3:11844906-11844925 Msa0442310:intron 45.0%
CAGAATCCTCATCTTCCTCA+TGG - chr3_3:11844924-11844943 None:intergenic 45.0%
CCGCAATGATGATCACTTAG+AGG + chr3_3:11844990-11845009 Msa0442310:intron 45.0%
ATCCCAAACATGTTGGTCCT+GGG - chr3_3:11845157-11845176 None:intergenic 45.0%
CCCATGTCATGTGATGTGTA+TGG - chr3_3:11845198-11845217 None:intergenic 45.0%
ATGACATGGGAGTTGCTTCA+AGG + chr3_3:11845208-11845227 Msa0442310:CDS 45.0%
TGACATGGGAGTTGCTTCAA+GGG + chr3_3:11845209-11845228 Msa0442310:CDS 45.0%
AGAGTGGGAATGGTGATCAT+TGG + chr3_3:11845244-11845263 Msa0442310:CDS 45.0%
GAGTGGGAATGGTGATCATT+GGG + chr3_3:11845245-11845264 Msa0442310:CDS 45.0%
AGTGGGAATGGTGATCATTG+GGG + chr3_3:11845246-11845265 Msa0442310:CDS 45.0%
GTAAGCAATGGTTACAGCCA+AGG + chr3_3:11845288-11845307 Msa0442310:CDS 45.0%
!! AGGTTTTTGGAGATGGACGA+AGG + chr3_3:11845412-11845431 Msa0442310:CDS 45.0%
TGATGCTGAGGAGATGCTTG+AGG + chr3_3:11843806-11843825 Msa0442310:CDS 50.0%
TTCAAACACCCGAAGCATGC+AGG + chr3_3:11843834-11843853 Msa0442310:CDS 50.0%
! TGGGTGTCGCAATCATCATC+AGG - chr3_3:11843897-11843916 None:intergenic 50.0%
GAGGAAGGATATGCACAAGG+TGG + chr3_3:11844058-11844077 Msa0442310:intron 50.0%
ACTTGCGATGGACATCCTAG+AGG + chr3_3:11844112-11844131 Msa0442310:intron 50.0%
CTTGCGATGGACATCCTAGA+GGG + chr3_3:11844113-11844132 Msa0442310:intron 50.0%
TTGCGATGGACATCCTAGAG+GGG + chr3_3:11844114-11844133 Msa0442310:intron 50.0%
ATCTTCGGTAGTGCAACTGG+TGG - chr3_3:11844182-11844201 None:intergenic 50.0%
TCAGTCCAGAACGACCCATA+AGG + chr3_3:11844275-11844294 Msa0442310:CDS 50.0%
GCTTGCGAGGAGAATGTTCA+AGG - chr3_3:11844333-11844352 None:intergenic 50.0%
CAAGCTGATGTTCCTGCATG+GGG + chr3_3:11844376-11844395 Msa0442310:CDS 50.0%
! GTTCCTGCATGGGGTTTTTC+TGG + chr3_3:11844385-11844404 Msa0442310:intron 50.0%
CATCCCCATCCCAAACATTG+AGG - chr3_3:11844423-11844442 None:intergenic 50.0%
!! TGAATTGGGGTTTGCTGGCA+TGG + chr3_3:11844636-11844655 Msa0442310:CDS 50.0%
!! GAATTGGGGTTTGCTGGCAT+GGG + chr3_3:11844637-11844656 Msa0442310:CDS 50.0%
TGCTACCCATGAGGAAGATG+AGG + chr3_3:11844915-11844934 Msa0442310:intron 50.0%
CTGGGCTTGAATCAGATGAG+GGG - chr3_3:11845139-11845158 None:intergenic 50.0%
CCTGGGCTTGAATCAGATGA+GGG - chr3_3:11845140-11845159 None:intergenic 50.0%
TCCTGGGCTTGAATCAGATG+AGG - chr3_3:11845141-11845160 None:intergenic 50.0%
AAGCCCAGGACCAACATGTT+TGG + chr3_3:11845151-11845170 Msa0442310:CDS 50.0%
AGCCCAGGACCAACATGTTT+GGG + chr3_3:11845152-11845171 Msa0442310:CDS 50.0%
CATCCCAAACATGTTGGTCC+TGG - chr3_3:11845158-11845177 None:intergenic 50.0%
AGTTGCTTCAAGGGAGACCA+AGG + chr3_3:11845218-11845237 Msa0442310:CDS 50.0%
ACCAAGGTGAAGAGTGGGAA+TGG + chr3_3:11845234-11845253 Msa0442310:CDS 50.0%
ACCATTCCCACTCTTCACCT+TGG - chr3_3:11845238-11845257 None:intergenic 50.0%
! TTACAGCCAAGGGTATGTGC+TGG + chr3_3:11845299-11845318 Msa0442310:CDS 50.0%
AATGCTCCAGCACATACCCT+TGG - chr3_3:11845308-11845327 None:intergenic 50.0%
!! TGGAGCATTGTGATGCACCA+GGG + chr3_3:11845319-11845338 Msa0442310:CDS 50.0%
TGATGCTGAGGAGATGCTTG+AGG + chr3_3:11843806-11843825 Msa0442310:CDS 50.0%
TTCAAACACCCGAAGCATGC+AGG + chr3_3:11843834-11843853 Msa0442310:CDS 50.0%
! TGGGTGTCGCAATCATCATC+AGG - chr3_3:11843897-11843916 None:intergenic 50.0%
GAGGAAGGATATGCACAAGG+TGG + chr3_3:11844058-11844077 Msa0442310:intron 50.0%
ACTTGCGATGGACATCCTAG+AGG + chr3_3:11844112-11844131 Msa0442310:intron 50.0%
CTTGCGATGGACATCCTAGA+GGG + chr3_3:11844113-11844132 Msa0442310:intron 50.0%
TTGCGATGGACATCCTAGAG+GGG + chr3_3:11844114-11844133 Msa0442310:intron 50.0%
ATCTTCGGTAGTGCAACTGG+TGG - chr3_3:11844182-11844201 None:intergenic 50.0%
TCAGTCCAGAACGACCCATA+AGG + chr3_3:11844275-11844294 Msa0442310:CDS 50.0%
GCTTGCGAGGAGAATGTTCA+AGG - chr3_3:11844333-11844352 None:intergenic 50.0%
CAAGCTGATGTTCCTGCATG+GGG + chr3_3:11844376-11844395 Msa0442310:CDS 50.0%
! GTTCCTGCATGGGGTTTTTC+TGG + chr3_3:11844385-11844404 Msa0442310:intron 50.0%
CATCCCCATCCCAAACATTG+AGG - chr3_3:11844423-11844442 None:intergenic 50.0%
!! TGAATTGGGGTTTGCTGGCA+TGG + chr3_3:11844636-11844655 Msa0442310:CDS 50.0%
!! GAATTGGGGTTTGCTGGCAT+GGG + chr3_3:11844637-11844656 Msa0442310:CDS 50.0%
TGCTACCCATGAGGAAGATG+AGG + chr3_3:11844915-11844934 Msa0442310:intron 50.0%
CTGGGCTTGAATCAGATGAG+GGG - chr3_3:11845139-11845158 None:intergenic 50.0%
CCTGGGCTTGAATCAGATGA+GGG - chr3_3:11845140-11845159 None:intergenic 50.0%
TCCTGGGCTTGAATCAGATG+AGG - chr3_3:11845141-11845160 None:intergenic 50.0%
AAGCCCAGGACCAACATGTT+TGG + chr3_3:11845151-11845170 Msa0442310:CDS 50.0%
AGCCCAGGACCAACATGTTT+GGG + chr3_3:11845152-11845171 Msa0442310:CDS 50.0%
CATCCCAAACATGTTGGTCC+TGG - chr3_3:11845158-11845177 None:intergenic 50.0%
AGTTGCTTCAAGGGAGACCA+AGG + chr3_3:11845218-11845237 Msa0442310:CDS 50.0%
ACCAAGGTGAAGAGTGGGAA+TGG + chr3_3:11845234-11845253 Msa0442310:CDS 50.0%
ACCATTCCCACTCTTCACCT+TGG - chr3_3:11845238-11845257 None:intergenic 50.0%
! TTACAGCCAAGGGTATGTGC+TGG + chr3_3:11845299-11845318 Msa0442310:CDS 50.0%
AATGCTCCAGCACATACCCT+TGG - chr3_3:11845308-11845327 None:intergenic 50.0%
!! TGGAGCATTGTGATGCACCA+GGG + chr3_3:11845319-11845338 Msa0442310:CDS 50.0%
ATGGACATCCTAGAGGGGCT+GGG + chr3_3:11844119-11844138 Msa0442310:intron 55.0%
CCAACTGATACAGGCTTGCG+AGG - chr3_3:11844346-11844365 None:intergenic 55.0%
CCTCGCAAGCCTGTATCAGT+TGG + chr3_3:11844343-11844362 Msa0442310:CDS 55.0%
GACCCAGAAAAACCCCATGC+AGG - chr3_3:11844391-11844410 None:intergenic 55.0%
GATTGTAGCTGCGAGGACAG+TGG + chr3_3:11844535-11844554 Msa0442310:CDS 55.0%
TGCTGGCATGGGAGAACAAG+TGG + chr3_3:11844648-11844667 Msa0442310:intron 55.0%
GAAAGCGAGCTGAGCAGAAC+AGG + chr3_3:11844830-11844849 Msa0442310:CDS 55.0%
CCCTCATCTGATTCAAGCCC+AGG + chr3_3:11845137-11845156 Msa0442310:CDS 55.0%
AGGGAGACCAAGGTGAAGAG+TGG + chr3_3:11845228-11845247 Msa0442310:CDS 55.0%
GGGAGACCAAGGTGAAGAGT+GGG + chr3_3:11845229-11845248 Msa0442310:CDS 55.0%
!! CTGGAGCATTGTGATGCACC+AGG + chr3_3:11845318-11845337 Msa0442310:CDS 55.0%
AGCATTGTGATGCACCAGGG+TGG + chr3_3:11845322-11845341 Msa0442310:CDS 55.0%
GCATTGTGATGCACCAGGGT+GGG + chr3_3:11845323-11845342 Msa0442310:CDS 55.0%
ATGGACATCCTAGAGGGGCT+GGG + chr3_3:11844119-11844138 Msa0442310:intron 55.0%
CCAACTGATACAGGCTTGCG+AGG - chr3_3:11844346-11844365 None:intergenic 55.0%
CCTCGCAAGCCTGTATCAGT+TGG + chr3_3:11844343-11844362 Msa0442310:CDS 55.0%
GACCCAGAAAAACCCCATGC+AGG - chr3_3:11844391-11844410 None:intergenic 55.0%
GATTGTAGCTGCGAGGACAG+TGG + chr3_3:11844535-11844554 Msa0442310:CDS 55.0%
TGCTGGCATGGGAGAACAAG+TGG + chr3_3:11844648-11844667 Msa0442310:intron 55.0%
GAAAGCGAGCTGAGCAGAAC+AGG + chr3_3:11844830-11844849 Msa0442310:CDS 55.0%
CCCTCATCTGATTCAAGCCC+AGG + chr3_3:11845137-11845156 Msa0442310:CDS 55.0%
AGGGAGACCAAGGTGAAGAG+TGG + chr3_3:11845228-11845247 Msa0442310:CDS 55.0%
GGGAGACCAAGGTGAAGAGT+GGG + chr3_3:11845229-11845248 Msa0442310:CDS 55.0%
!! CTGGAGCATTGTGATGCACC+AGG + chr3_3:11845318-11845337 Msa0442310:CDS 55.0%
AGCATTGTGATGCACCAGGG+TGG + chr3_3:11845322-11845341 Msa0442310:CDS 55.0%
GCATTGTGATGCACCAGGGT+GGG + chr3_3:11845323-11845342 Msa0442310:CDS 55.0%
TCGCTGGGACCTGCATGCTT+CGG - chr3_3:11843846-11843865 None:intergenic 60.0%
GATGGACATCCTAGAGGGGC+TGG + chr3_3:11844118-11844137 Msa0442310:intron 60.0%
TGGACATCCTAGAGGGGCTG+GGG + chr3_3:11844120-11844139 Msa0442310:intron 60.0%
GCTGGGGACTCTCCTGTGAT+AGG + chr3_3:11844136-11844155 Msa0442310:intron 60.0%
CTGGTGGCCCAAGAAGAAGC+AGG - chr3_3:11844166-11844185 None:intergenic 60.0%
ACAAAGCCAGGATCCCACCC+TGG - chr3_3:11845339-11845358 None:intergenic 60.0%
TCGCTGGGACCTGCATGCTT+CGG - chr3_3:11843846-11843865 None:intergenic 60.0%
GATGGACATCCTAGAGGGGC+TGG + chr3_3:11844118-11844137 Msa0442310:intron 60.0%
TGGACATCCTAGAGGGGCTG+GGG + chr3_3:11844120-11844139 Msa0442310:intron 60.0%
GCTGGGGACTCTCCTGTGAT+AGG + chr3_3:11844136-11844155 Msa0442310:intron 60.0%
CTGGTGGCCCAAGAAGAAGC+AGG - chr3_3:11844166-11844185 None:intergenic 60.0%
ACAAAGCCAGGATCCCACCC+TGG - chr3_3:11845339-11845358 None:intergenic 60.0%
CGCTGGGACCTGCATGCTTC+GGG - chr3_3:11843845-11843864 None:intergenic 65.0%
GATGCACCAGGGTGGGATCC+TGG + chr3_3:11845330-11845349 Msa0442310:CDS 65.0%
CGCTGGGACCTGCATGCTTC+GGG - chr3_3:11843845-11843864 None:intergenic 65.0%
GATGCACCAGGGTGGGATCC+TGG + chr3_3:11845330-11845349 Msa0442310:CDS 65.0%
GGAGAGTCCCCAGCCCCTCT+AGG - chr3_3:11844130-11844149 None:intergenic 70.0%
GGAGAGTCCCCAGCCCCTCT+AGG - chr3_3:11844130-11844149 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 11843759 11845455 11843759 ID=Msa0442310;Name=Msa0442310
chr3_3 mRNA 11843759 11845455 11843759 ID=Msa0442310-mRNA-1;Parent=Msa0442310;Name=Msa0442310-mRNA-1;_AED=0.18;_eAED=0.18;_QI=27|0|0.2|1|0|0.2|5|0|398
chr3_3 exon 11843759 11843933 11843759 ID=Msa0442310-mRNA-1:exon:2531;Parent=Msa0442310-mRNA-1
chr3_3 exon 11844158 11844397 11844158 ID=Msa0442310-mRNA-1:exon:2532;Parent=Msa0442310-mRNA-1
chr3_3 exon 11844413 11844666 11844413 ID=Msa0442310-mRNA-1:exon:2533;Parent=Msa0442310-mRNA-1
chr3_3 exon 11844712 11844912 11844712 ID=Msa0442310-mRNA-1:exon:2534;Parent=Msa0442310-mRNA-1
chr3_3 exon 11845102 11845455 11845102 ID=Msa0442310-mRNA-1:exon:2535;Parent=Msa0442310-mRNA-1
chr3_3 five_prime_UTR 11843759 11843785 11843759 ID=Msa0442310-mRNA-1:five_prime_utr;Parent=Msa0442310-mRNA-1
chr3_3 CDS 11843786 11843933 11843786 ID=Msa0442310-mRNA-1:cds;Parent=Msa0442310-mRNA-1
chr3_3 CDS 11844158 11844397 11844158 ID=Msa0442310-mRNA-1:cds;Parent=Msa0442310-mRNA-1
chr3_3 CDS 11844413 11844666 11844413 ID=Msa0442310-mRNA-1:cds;Parent=Msa0442310-mRNA-1
chr3_3 CDS 11844712 11844912 11844712 ID=Msa0442310-mRNA-1:cds;Parent=Msa0442310-mRNA-1
chr3_3 CDS 11845102 11845455 11845102 ID=Msa0442310-mRNA-1:cds;Parent=Msa0442310-mRNA-1
Gene Sequence

>Msa0442310

ATGGTGCAGAAACGTCCTTTTGATGCTGAGGAGATGCTTGAGGTGTCATTCAAACACCCGAAGCATGCAGGTCCCAGCGATTTTCTACCGTTAACAGAATCTGTTTTTCCTGATGATGATTGCGACACCCATTTGGCTAAGACTTCAGGTATTCCTGCTTCTTCTTGGGCCACCAGTTGCACTACCGAAGATGATCACCGTTCAGAACAGCCTATACATCTTCCCTTTTTCCATGAGTACTTCAGTCCAGAACGGCCAATATATTTCAGTCCAGAACGACCCATAAGGACATTAACTCATGAGGACCTCTATTCCATACTCCTTGAACATTCTCCTCGCAAGCCTGTATCAGTTGGAGCTGATCATCAAGCTGATGTTCCTGCATGGGATTCAAACCTCAATGTTTGGGATGGGGATGAAGCTGAAAAAAGAATGATGGGGACCTGTATTATCCCTATGCCTGAGATGGAATTATCTAGCGTTGATGATGAAGTTGGAAAAGGAAGAACTGATTGTAGCTGCGAGGACAGTGGATCTATGAGATGTGTAAGACAACATATAATGGAAGAGAGAAAAAAACTATTAAAAACCCTTGGGATTGAGAAATTCATTGAATTGGGGTTTGCTGGCATGGGAGAACAAGTAGTCTTCAACAATCCAGCATCCCTCAACAAGAATTTCTGGAACTATCTTTCCATTGTTTTTCCTTCACGAAGCAAAAAGGAGATAGTGAGTTACTACTTTAATGTCTTCATGCTTCGAAAGCGAGCTGAGCAGAACAGGAACCACCTATTAAGTGCTGATAGTGATAATGATGAATGGCAAGGTAGTGACGACAATGAATATGATTTTCTTGATATGCATCACTCTAGTGGTTCCCCTCATCTGATTCAAGCCCAGGACCAACATGTTTGGGATGAAAAAGTTAAACATGATCCATACACATCACATGACATGGGAGTTGCTTCAAGGGAGACCAAGGTGAAGAGTGGGAATGGTGATCATTGGGGCAGTAACTATAATAATGGAGTAAGCAATGGTTACAGCCAAGGGTATGTGCTGGAGCATTGTGATGCACCAGGGTGGGATCCTGGCTTTGTATCTTGCTCTAAAAGTAAGATGGATTTCTTACCTACATGTAGCATGATAGAAGAGGTTTTTGGAGATGGACGAAGGCAAGACATGAGAAGAGCTTGA

Protein sequence

>Msa0442310

MVQKRPFDAEEMLEVSFKHPKHAGPSDFLPLTESVFPDDDCDTHLAKTSGIPASSWATSCTTEDDHRSEQPIHLPFFHEYFSPERPIYFSPERPIRTLTHEDLYSILLEHSPRKPVSVGADHQADVPAWDSNLNVWDGDEAEKRMMGTCIIPMPEMELSSVDDEVGKGRTDCSCEDSGSMRCVRQHIMEERKKLLKTLGIEKFIELGFAGMGEQVVFNNPASLNKNFWNYLSIVFPSRSKKEIVSYYFNVFMLRKRAEQNRNHLLSADSDNDEWQGSDDNEYDFLDMHHSSGSPHLIQAQDQHVWDEKVKHDPYTSHDMGVASRETKVKSGNGDHWGSNYNNGVSNGYSQGYVLEHCDAPGWDPGFVSCSKSKMDFLPTCSMIEEVFGDGRRQDMRRA*