AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449210 MtrunA17_Chr3g0092521 99.615 260 1 0 1 260 1 260 0.0 513
Msa0449210 MtrunA17_Chr4g0060621 77.376 221 47 1 1 221 1 218 6.76e-125 355
Msa0449210 MtrunA17_Chr4g0064221 50.417 240 104 3 3 232 100 334 2.45e-78 241
Msa0449210 MtrunA17_Chr6g0487861 48.235 85 43 1 60 143 2 86 2.56e-23 90.5
Msa0449210 MtrunA17_Chr6g0487691 48.235 85 43 1 60 143 2 86 2.56e-23 90.5
Msa0449210 MtrunA17_Chr6g0487501 40.299 134 67 3 88 209 23 155 9.48e-22 88.6
Msa0449210 MtrunA17_Chr2g0299511 23.265 245 129 7 29 222 14 250 3.31e-12 65.1
Msa0449210 MtrunA17_Chr2g0299521 30.345 145 77 4 29 163 55 185 1.45e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449210 AT1G18800.1 73.333 225 52 3 1 221 1 221 4.32e-116 333
Msa0449210 AT1G74560.3 77.436 195 42 2 20 212 22 216 1.15e-107 312
Msa0449210 AT1G74560.1 71.552 232 59 3 20 249 22 248 1.32e-107 311

Find 87 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTCCATTCCCGATTTC+TGG 0.148537 3_3:-31641949 Msa0449210:CDS
TGTGCTTTGAAGGTGATTTC+TGG 0.176844 3_3:-31638493 Msa0449210:three_prime_UTR
AAATGATCAAGGATGATTTA+TGG 0.278723 3_3:-31639935 Msa0449210:CDS
GGAGTATCTTAGTGGTCTTT+AGG 0.285414 3_3:-31638577 Msa0449210:three_prime_UTR
GAGTATCTTAGTGGTCTTTA+GGG 0.295373 3_3:-31638576 Msa0449210:three_prime_UTR
CCTTCAAAGCACAATAAATA+AGG 0.296384 3_3:+31638503 None:intergenic
TCATCCTCCTCTGCTTCATC+AGG 0.316616 3_3:+31639756 None:intergenic
CCTTATTTATTGTGCTTTGA+AGG 0.317347 3_3:-31638503 Msa0449210:three_prime_UTR
TTGAAATAATTGAGCGGATT+CGG 0.342504 3_3:+31639912 None:intergenic
TCTCTCCATTGAAAAGTTGC+AGG 0.343507 3_3:-31642713 Msa0449210:CDS
TTACCGCCACACCCATAAAA+TGG 0.350698 3_3:-31640771 Msa0449210:CDS
ACTACTATATGGTTCAATAT+AGG 0.369922 3_3:+31638413 None:intergenic
TACCGCAGTTAGCCAGAAAT+CGG 0.377960 3_3:+31641937 None:intergenic
AGCGAGCTGCCTCTGATATC+AGG 0.378291 3_3:-31640583 Msa0449210:intron
TTCTCATGACTAACTCCATT+GGG 0.391028 3_3:+31640617 None:intergenic
CACCGAGCAGAAAGATGAAA+TGG 0.393738 3_3:-31640124 Msa0449210:CDS
GCGTGAATGAGGGAAGTGTT+AGG 0.399048 3_3:+31642883 None:intergenic
GAAGTTGAAAGTTTCTGAAA+AGG 0.400020 3_3:-31642770 Msa0449210:CDS
GCTTTGTTGTTCCTTCTTCA+AGG 0.405290 3_3:+31640794 None:intergenic
GATAAAATCCGATGTATCAT+TGG 0.406601 3_3:+31638441 None:intergenic
TGCTTTAAAATAGCAATACT+TGG 0.414805 3_3:-31638630 Msa0449210:three_prime_UTR
GATCATAAAGATGTTAAATC+AGG 0.415444 3_3:-31641020 Msa0449210:CDS
AAGTTGAAAGTTTCTGAAAA+GGG 0.417210 3_3:-31642769 Msa0449210:CDS
GAAAGACCAAGGTTGGCTAT+TGG 0.423156 3_3:-31638547 Msa0449210:three_prime_UTR
TTTCAACTTCTTAGACTTGT+CGG 0.425948 3_3:+31642783 None:intergenic
ACCCATTTCATCTTTCTGCT+CGG 0.435207 3_3:+31640122 None:intergenic
TGAATCCTCAAAATAGGGAT+TGG 0.446308 3_3:+31640840 None:intergenic
CTTCTCATGACTAACTCCAT+TGG 0.461543 3_3:+31640616 None:intergenic
TTCAAGAGATCACCAAGAAC+AGG 0.466713 3_3:+31641789 None:intergenic
ACCTTCTGTTTCTTCAACCA+TGG 0.467231 3_3:-31642809 Msa0449210:exon
TTGAAGAAACAGAAGGTGTT+GGG 0.469510 3_3:+31642815 None:intergenic
CGTGAATGAGGGAAGTGTTA+GGG 0.473720 3_3:+31642884 None:intergenic
ACAAATCTCTCCACTGCGCT+AGG 0.474350 3_3:-31642846 Msa0449210:five_prime_UTR
AGCAGAAGTACAATGAAGTA+AGG 0.474420 3_3:-31642003 Msa0449210:CDS
ATGAATGCAGTTTCTTTACC+TGG 0.476177 3_3:-31640155 Msa0449210:intron
TTATTATAGGAGTATCTTAG+TGG 0.477899 3_3:-31638585 Msa0449210:three_prime_UTR
AAATAAGGTTTACGCCCAAA+GGG 0.488877 3_3:+31638518 None:intergenic
TAACAACGGTGCGCGCGTGC+GGG 0.489280 3_3:+31642964 None:intergenic
CACAACTTTACAGTACCAAC+CGG 0.490777 3_3:-31638335 Msa0449210:three_prime_UTR
CTAACAACGGTGCGCGCGTG+CGG 0.503839 3_3:+31642963 None:intergenic
GTACAATGAAGTAAGGAAAC+CGG 0.504777 3_3:-31641996 Msa0449210:CDS
GAGTTAGTCATGAGAAGAAA+GGG 0.511551 3_3:-31640610 Msa0449210:CDS
TAAGCATTTAATCTCTCTTG+AGG 0.513660 3_3:-31641048 Msa0449210:CDS
TGTTGTTCCTTCTTCAAGGA+AGG 0.519890 3_3:+31640798 None:intergenic
GGAGTTAGTCATGAGAAGAA+AGG 0.520004 3_3:-31640611 Msa0449210:CDS
GTTGAAGAAACAGAAGGTGT+TGG 0.520095 3_3:+31642814 None:intergenic
TAAATAAGGTTTACGCCCAA+AGG 0.532363 3_3:+31638517 None:intergenic
CACACCCATAAAATGGAAAG+AGG 0.533883 3_3:-31640764 Msa0449210:CDS
ACCGCAGTTAGCCAGAAATC+GGG 0.534071 3_3:+31641938 None:intergenic
CTGCTCGGTGTCACAAAACC+AGG 0.534635 3_3:+31640137 None:intergenic
AATTCAAGATGAGATTGAAA+AGG 0.541675 3_3:-31642689 Msa0449210:intron
ACCGAGCAGAAAGATGAAAT+GGG 0.553075 3_3:-31640123 Msa0449210:CDS
GGATGATGAAAGACCAAGGT+TGG 0.555399 3_3:-31638554 Msa0449210:three_prime_UTR
CTTAGACTTGTCGGCCACCA+TGG 0.561301 3_3:+31642792 None:intergenic
CATCCTCCTCTGCTTCATCA+GGG 0.561342 3_3:+31639757 None:intergenic
GCATTTAATCTCTCTTGAGG+TGG 0.569987 3_3:-31641045 Msa0449210:CDS
CTTGAATGAAGAAGATCAGA+AGG 0.578793 3_3:-31641772 Msa0449210:intron
AACATGAAGGGCATTCCCAA+TGG 0.580353 3_3:-31640632 Msa0449210:intron
GGACCCTGATGAAGCAGAGG+AGG 0.584391 3_3:-31639760 Msa0449210:CDS
CATAAAATGGAAAGAGGGCA+AGG 0.586031 3_3:-31640758 Msa0449210:intron
GTAGATTGCTGAAATGATCA+AGG 0.588612 3_3:-31639946 Msa0449210:intron
TTCTGTTTCTTCAACCATGG+TGG 0.589035 3_3:-31642806 Msa0449210:exon
CAAATCTCTCCACTGCGCTA+GGG 0.593891 3_3:-31642845 Msa0449210:five_prime_UTR
GGAAAACCAATAGCCAACCT+TGG 0.610576 3_3:+31638541 None:intergenic
TCAAGATACCAATGATACAT+CGG 0.611283 3_3:-31638449 Msa0449210:three_prime_UTR
AATAAGGTTTACGCCCAAAG+GGG 0.612679 3_3:+31638519 None:intergenic
TGAAGATGATGATGATCAAG+AGG 0.613053 3_3:-31638689 Msa0449210:CDS
AGAGGATGACGACGATGACG+AGG 0.613787 3_3:-31638671 Msa0449210:CDS
GGAGGACCCTGATGAAGCAG+AGG 0.616842 3_3:-31639763 Msa0449210:CDS
TAACACCAACCTGATATCAG+AGG 0.617428 3_3:+31640574 None:intergenic
TCATTGCGCTTGTCATACAC+CGG 0.617462 3_3:+31641977 None:intergenic
GAGGAGGATGATGATGAAGC+TGG 0.618117 3_3:-31639744 Msa0449210:CDS
AGTTAGCCAGAAATCGGGAA+TGG 0.630002 3_3:+31641943 None:intergenic
GGTTTCAAACCCTAGCGCAG+TGG 0.634230 3_3:+31642836 None:intergenic
ACACCCATAAAATGGAAAGA+GGG 0.634604 3_3:-31640763 Msa0449210:CDS
AGTATCTTAGTGGTCTTTAG+GGG 0.638994 3_3:-31638575 Msa0449210:three_prime_UTR
ATAAGGTTTACGCCCAAAGG+GGG 0.649454 3_3:+31638520 None:intergenic
TCCCGATTTCTGGCTAACTG+CGG 0.657384 3_3:-31641939 Msa0449210:intron
ATGGTAACAGATCAATGAGG+AGG 0.670015 3_3:-31642050 Msa0449210:intron
ACACTGTTGAAATAATTGAG+CGG 0.677153 3_3:+31639906 None:intergenic
AGAGATCACCAAGAACAGGA+TGG 0.685499 3_3:+31641793 None:intergenic
TAGGGGATGATGAAAGACCA+AGG 0.689189 3_3:-31638558 Msa0449210:three_prime_UTR
GAAAACGCTGAAGAGATCGA+CGG 0.693016 3_3:-31642745 Msa0449210:CDS
AATGGGTGACATTCATGATG+AGG 0.701668 3_3:-31640106 Msa0449210:intron
TGATGATGAAGCTGGTGATG+CGG 0.730644 3_3:-31639736 Msa0449210:intron
ACCATGGTTGAAGAAACAGA+AGG 0.734429 3_3:+31642808 None:intergenic
ATTATGGTAACAGATCAATG+AGG 0.777064 3_3:-31642053 Msa0449210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAAAAGAAAAAT+TGG + chr3_3:31638690-31638709 None:intergenic 10.0%
!!! GTAAATTTTATTTAAGTAAA+TGG - chr3_3:31638974-31638993 Msa0449210:intron 10.0%
!! TTTAGTAAAATAGTTAATTT+GGG - chr3_3:31641860-31641879 Msa0449210:intron 10.0%
!! TATATTTAATTATAAATGCA+AGG + chr3_3:31642563-31642582 None:intergenic 10.0%
!! AAATATACATACATATATTA+TGG - chr3_3:31642576-31642595 Msa0449210:intron 10.0%
!!! ATTTATTTTAAGGTTATTAT+AGG - chr3_3:31642752-31642771 Msa0449210:CDS 10.0%
!! TAAAATGTAATTAAACTTAG+TGG - chr3_3:31638783-31638802 Msa0449210:intron 15.0%
!!! TTTTAATTAGGTAAATTGTA+TGG - chr3_3:31638932-31638951 Msa0449210:intron 15.0%
!!! GTTTCTTTATGTTTTAATTT+TGG - chr3_3:31639444-31639463 Msa0449210:intron 15.0%
!! TCAAGATTAAAATCTTAAAT+TGG + chr3_3:31640188-31640207 None:intergenic 15.0%
!!! TTGTATTTTGCTTAAATTAA+AGG - chr3_3:31640441-31640460 Msa0449210:intron 15.0%
!! AATTAATTATTTGTTCCATT+TGG + chr3_3:31641164-31641183 None:intergenic 15.0%
!! CAAAAAAGGAAAAAAATTAA+TGG + chr3_3:31641651-31641670 None:intergenic 15.0%
!! CTTTAGTAAAATAGTTAATT+TGG - chr3_3:31641859-31641878 Msa0449210:intron 15.0%
!!! TTAGTAAAATAGTTAATTTG+GGG - chr3_3:31641861-31641880 Msa0449210:intron 15.0%
!! AACTTAGTGGAATTAAATTA+TGG - chr3_3:31638796-31638815 Msa0449210:intron 20.0%
!! ACTTAGTGGAATTAAATTAT+GGG - chr3_3:31638797-31638816 Msa0449210:intron 20.0%
!! AAAATAAAACTTCTGTATGT+TGG + chr3_3:31638887-31638906 None:intergenic 20.0%
!!! ATTTTTTTCATCTGCATTTT+TGG - chr3_3:31639118-31639137 Msa0449210:intron 20.0%
!!! GCGATTTTTTTTTTTTGTAT+AGG - chr3_3:31639169-31639188 Msa0449210:intron 20.0%
!!! AATATCCATAATTTCCTTTT+TGG + chr3_3:31639195-31639214 None:intergenic 20.0%
!! AGGAAATTATGGATATTTAT+AGG - chr3_3:31639198-31639217 Msa0449210:intron 20.0%
!! GGAAATTATGGATATTTATA+GGG - chr3_3:31639199-31639218 Msa0449210:intron 20.0%
!!! AATGCAATTTAATTTGATTC+TGG - chr3_3:31639272-31639291 Msa0449210:intron 20.0%
!! TTTAACAACACAATAACTAA+CGG + chr3_3:31639488-31639507 None:intergenic 20.0%
!! TCAAACAATATTCAAAGTAA+TGG + chr3_3:31639751-31639770 None:intergenic 20.0%
!!! TGATAAAGTTCACTTTTAAA+CGG + chr3_3:31639916-31639935 None:intergenic 20.0%
!!! TGATTCATTATGAAGTATTT+TGG - chr3_3:31639989-31640008 Msa0449210:intron 20.0%
!! AAAATGAAAAAGAGAAAAAG+TGG + chr3_3:31640653-31640672 None:intergenic 20.0%
!! AACATTATCTTTAAACATGA+AGG - chr3_3:31640705-31640724 Msa0449210:intron 20.0%
!! ACATTATCTTTAAACATGAA+GGG - chr3_3:31640706-31640725 Msa0449210:intron 20.0%
!!! AATCACAAGTTTTTCAAAAA+AGG + chr3_3:31641665-31641684 None:intergenic 20.0%
!! TAACCAAAAAGTAAGTTTAA+GGG + chr3_3:31642154-31642173 None:intergenic 20.0%
!! TTAACCAAAAAGTAAGTTTA+AGG + chr3_3:31642155-31642174 None:intergenic 20.0%
!!! GTTAGTTATGAATAGATTTT+GGG + chr3_3:31642185-31642204 None:intergenic 20.0%
!!! TGTTAGTTATGAATAGATTT+TGG + chr3_3:31642186-31642205 None:intergenic 20.0%
!! TCATATATCTAGACATATAA+TGG + chr3_3:31642280-31642299 None:intergenic 20.0%
!! TACTCCTTAATATAAATGTT+CGG - chr3_3:31642306-31642325 Msa0449210:intron 20.0%
!!! GTCTAATTGAATTTAGAATA+GGG + chr3_3:31642360-31642379 None:intergenic 20.0%
!!! AGTCTAATTGAATTTAGAAT+AGG + chr3_3:31642361-31642380 None:intergenic 20.0%
!!! ACTACATTTTAACTACTATA+TGG + chr3_3:31642951-31642970 None:intergenic 20.0%
!! AAGTTGAAAGTTTCTGAAAA+GGG - chr3_3:31638581-31638600 Msa0449210:three_prime_UTR 25.0%
! AATTCAAGATGAGATTGAAA+AGG - chr3_3:31638661-31638680 Msa0449210:CDS 25.0%
! TAAATTGAATTCTACAACAG+AGG + chr3_3:31638754-31638773 None:intergenic 25.0%
! CTTAGTGGAATTAAATTATG+GGG - chr3_3:31638798-31638817 Msa0449210:intron 25.0%
! TAACACTAAAAACGAAATGT+TGG + chr3_3:31639013-31639032 None:intergenic 25.0%
!! TTTTGGTAGGAAAATGTAAT+CGG - chr3_3:31639135-31639154 Msa0449210:intron 25.0%
!!! TTTTTTTGTATAGGCCAAAA+AGG - chr3_3:31639178-31639197 Msa0449210:intron 25.0%
! CAGAATTCAGATTAAGTAAT+AGG + chr3_3:31639226-31639245 None:intergenic 25.0%
! TAATTTGATTCTGGTGATTA+TGG - chr3_3:31639281-31639300 Msa0449210:intron 25.0%
!!! TTTGGTTTTGTTTTTATCGT+TGG - chr3_3:31639462-31639481 Msa0449210:intron 25.0%
!!! CTCTTTTTCATATAAAGTTC+TGG + chr3_3:31639676-31639695 None:intergenic 25.0%
!! ATTCCTATGTGTATCTATTT+TGG - chr3_3:31639936-31639955 Msa0449210:CDS 25.0%
! AAATCAAATGAGAAGAAAAG+TGG + chr3_3:31640054-31640073 None:intergenic 25.0%
! TACTTTAGTCACATATATGA+TGG - chr3_3:31640237-31640256 Msa0449210:intron 25.0%
! GATCATAAAGATGTTAAATC+AGG - chr3_3:31640330-31640349 Msa0449210:intron 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG + chr3_3:31640518-31640537 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG + chr3_3:31640519-31640538 None:intergenic 25.0%
! CTAACATATGAAACTAGTAA+AGG + chr3_3:31640899-31640918 None:intergenic 25.0%
! ATGCAACAGAAAACAAATTA+AGG + chr3_3:31641352-31641371 None:intergenic 25.0%
! AAATGATCAAGGATGATTTA+TGG - chr3_3:31641415-31641434 Msa0449210:intron 25.0%
! ACATGCAACAAAAAATTGAT+GGG + chr3_3:31641722-31641741 None:intergenic 25.0%
! AACATGCAACAAAAAATTGA+TGG + chr3_3:31641723-31641742 None:intergenic 25.0%
!!! ATCAATTTTTTGTTGCATGT+TGG - chr3_3:31641722-31641741 Msa0449210:intron 25.0%
! TATTCAAAGAGGAAGAAAAA+TGG - chr3_3:31641822-31641841 Msa0449210:intron 25.0%
! ATTCAAAGAGGAAGAAAAAT+GGG - chr3_3:31641823-31641842 Msa0449210:intron 25.0%
! AAGTAACTCTTATGAAGAAT+TGG - chr3_3:31641945-31641964 Msa0449210:CDS 25.0%
! AGTAACTCTTATGAAGAATT+GGG - chr3_3:31641946-31641965 Msa0449210:CDS 25.0%
! TATTTGAAAACACTGGTATT+AGG + chr3_3:31641976-31641995 None:intergenic 25.0%
! AAAAGTAAGTTTAAGGGATT+AGG + chr3_3:31642148-31642167 None:intergenic 25.0%
!!! AATCCCTTAAACTTACTTTT+TGG - chr3_3:31642148-31642167 Msa0449210:intron 25.0%
! GTTTATAAAACTAGATATGC+AGG + chr3_3:31642247-31642266 None:intergenic 25.0%
! ACTCCTTAATATAAATGTTC+GGG - chr3_3:31642307-31642326 Msa0449210:intron 25.0%
! TAACCCGAACATTTATATTA+AGG + chr3_3:31642313-31642332 None:intergenic 25.0%
!!! TGCTTTAAAATAGCAATACT+TGG - chr3_3:31642720-31642739 Msa0449210:CDS 25.0%
!!! TTATTATAGGAGTATCTTAG+TGG - chr3_3:31642765-31642784 Msa0449210:CDS 25.0%
! ACTACTATATGGTTCAATAT+AGG + chr3_3:31642940-31642959 None:intergenic 25.0%
TTTCAACTTCTTAGACTTGT+CGG + chr3_3:31638570-31638589 None:intergenic 30.0%
! GAAGTTGAAAGTTTCTGAAA+AGG - chr3_3:31638580-31638599 Msa0449210:three_prime_UTR 30.0%
! AATTTCCTGCAACTTTTCAA+TGG + chr3_3:31638645-31638664 None:intergenic 30.0%
ACGAAATGTTGGATATTCAT+AGG + chr3_3:31639002-31639021 None:intergenic 30.0%
TACTACATGACTAAAAGTTC+TGG + chr3_3:31639080-31639099 None:intergenic 30.0%
!!! TTTTCATCTGCATTTTTGGT+AGG - chr3_3:31639122-31639141 Msa0449210:intron 30.0%
ATAGGCCAAAAAGGAAATTA+TGG - chr3_3:31639187-31639206 Msa0449210:intron 30.0%
ATTATGGTAACAGATCAATG+AGG - chr3_3:31639297-31639316 Msa0449210:intron 30.0%
GAATAGCTATGGTAAAGTTA+TGG + chr3_3:31639631-31639650 None:intergenic 30.0%
AATAAACAGAACCAAAAACG+AGG + chr3_3:31639726-31639745 None:intergenic 30.0%
AGTCCAAAATAGATACACAT+AGG + chr3_3:31639942-31639961 None:intergenic 30.0%
AAATGAGAAGAAAAGTGGTT+GGG + chr3_3:31640049-31640068 None:intergenic 30.0%
TAAGCATTTAATCTCTCTTG+AGG - chr3_3:31640302-31640321 Msa0449210:intron 30.0%
CTAATGAATTATGCACTGAA+GGG + chr3_3:31640389-31640408 None:intergenic 30.0%
ACTAATGAATTATGCACTGA+AGG + chr3_3:31640390-31640409 None:intergenic 30.0%
! GTGTTTTGCAAATCTCAATT+AGG - chr3_3:31640408-31640427 Msa0449210:intron 30.0%
!! TGGTGTTAAAAGTGTTTCTA+TGG - chr3_3:31640791-31640810 Msa0449210:CDS 30.0%
!! CTTGTTGTTCATGTATAAGT+TGG - chr3_3:31640923-31640942 Msa0449210:intron 30.0%
TAACCATACCATGTTTGTTT+GGG + chr3_3:31640991-31641010 None:intergenic 30.0%
TTAACCATACCATGTTTGTT+TGG + chr3_3:31640992-31641011 None:intergenic 30.0%
! TCATGATTGGTGATATAGTT+TGG - chr3_3:31641082-31641101 Msa0449210:intron 30.0%
ATCTTCTTGAAAATGCCAAA+TGG - chr3_3:31641146-31641165 Msa0449210:intron 30.0%
CATTTCAGCAATCTACAATT+TGG + chr3_3:31641400-31641419 None:intergenic 30.0%
! TTGAAATAATTGAGCGGATT+CGG + chr3_3:31641441-31641460 None:intergenic 30.0%
ACACTGTTGAAATAATTGAG+CGG + chr3_3:31641447-31641466 None:intergenic 30.0%
TTAGATACAAGTATAGAGAG+TGG + chr3_3:31641544-31641563 None:intergenic 30.0%
CTCTCTATACTTGTATCTAA+TGG - chr3_3:31641544-31641563 Msa0449210:intron 30.0%
!!! CTTGATTTGGGTAAGATTTT+GGG - chr3_3:31641790-31641809 Msa0449210:CDS 30.0%
TTCAAAGAGGAAGAAAAATG+GGG - chr3_3:31641824-31641843 Msa0449210:intron 30.0%
!! TGTCATTTGATTCTAAGATC+TGG - chr3_3:31641900-31641919 Msa0449210:intron 30.0%
ATGTTCTGTGATATGCTATT+TGG - chr3_3:31642034-31642053 Msa0449210:CDS 30.0%
ATAAAACTAGATATGCAGGT+GGG + chr3_3:31642243-31642262 None:intergenic 30.0%
TATAAAACTAGATATGCAGG+TGG + chr3_3:31642244-31642263 None:intergenic 30.0%
TTATAAATGCAAGGCACAAA+AGG + chr3_3:31642554-31642573 None:intergenic 30.0%
CCTTCAAAGCACAATAAATA+AGG + chr3_3:31642850-31642869 None:intergenic 30.0%
! CCTTATTTATTGTGCTTTGA+AGG - chr3_3:31642847-31642866 Msa0449210:five_prime_UTR 30.0%
TCAAGATACCAATGATACAT+CGG - chr3_3:31642901-31642920 Msa0449210:five_prime_UTR 30.0%
GATAAAATCCGATGTATCAT+TGG + chr3_3:31642912-31642931 None:intergenic 30.0%
!!! AGGGTTTTGAGGGTTTATAT+TGG + chr3_3:31638450-31638469 None:intergenic 35.0%
!! TTGAAGAAACAGAAGGTGTT+GGG + chr3_3:31638538-31638557 None:intergenic 35.0%
!! TGGGGTTGATGTTTAAACTT+AGG - chr3_3:31638816-31638835 Msa0449210:intron 35.0%
!! GGGGTTGATGTTTAAACTTA+GGG - chr3_3:31638817-31638836 Msa0449210:intron 35.0%
AAACTTAGGGTAACATTGTG+TGG - chr3_3:31638830-31638849 Msa0449210:intron 35.0%
TAAGGGTTCACCCAAAATTA+GGG + chr3_3:31638860-31638879 None:intergenic 35.0%
TTCTGTATGTTGGATCCTAA+GGG + chr3_3:31638877-31638896 None:intergenic 35.0%
! TACATGACTAAAAGTTCTGG+CGG + chr3_3:31639077-31639096 None:intergenic 35.0%
! AGCAGAAGTACAATGAAGTA+AGG - chr3_3:31639347-31639366 Msa0449210:intron 35.0%
GTACAATGAAGTAAGGAAAC+CGG - chr3_3:31639354-31639373 Msa0449210:intron 35.0%
CTTGAATGAAGAAGATCAGA+AGG - chr3_3:31639578-31639597 Msa0449210:intron 35.0%
GAATAGCACTTGAATAGCTA+TGG + chr3_3:31639642-31639661 None:intergenic 35.0%
! GTGTAATAACTCCTCGTTTT+TGG - chr3_3:31639712-31639731 Msa0449210:intron 35.0%
TACGTTCATACTGTGATCAT+TGG + chr3_3:31640021-31640040 None:intergenic 35.0%
CAAATGAGAAGAAAAGTGGT+TGG + chr3_3:31640050-31640069 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG + chr3_3:31640513-31640532 None:intergenic 35.0%
! ACTTTTACCTTCCTTGAAGA+AGG - chr3_3:31640545-31640564 Msa0449210:intron 35.0%
ACACCCATAAAATGGAAAGA+GGG - chr3_3:31640587-31640606 Msa0449210:CDS 35.0%
! TTGCCCTCTTTCCATTTTAT+GGG + chr3_3:31640593-31640612 None:intergenic 35.0%
AGAGAAAAAGTGGATAGATG+AGG + chr3_3:31640643-31640662 None:intergenic 35.0%
TTCTCATGACTAACTCCATT+GGG + chr3_3:31640736-31640755 None:intergenic 35.0%
GAGTTAGTCATGAGAAGAAA+GGG - chr3_3:31640740-31640759 Msa0449210:intron 35.0%
! AGTGTTTCTATGGAAGACAT+TGG - chr3_3:31640801-31640820 Msa0449210:CDS 35.0%
TGGAAGACATTGGAAAACAA+AGG - chr3_3:31640811-31640830 Msa0449210:CDS 35.0%
! TGAATTTCCAGAGTTTTGCA+TGG - chr3_3:31640947-31640966 Msa0449210:intron 35.0%
ATTTGTGTCCCAAACAAACA+TGG - chr3_3:31640980-31640999 Msa0449210:intron 35.0%
ATGATGAATGAGCTCATGAT+TGG - chr3_3:31641069-31641088 Msa0449210:intron 35.0%
ATGAATGCAGTTTCTTTACC+TGG - chr3_3:31641195-31641214 Msa0449210:intron 35.0%
GTAGATTGCTGAAATGATCA+AGG - chr3_3:31641404-31641423 Msa0449210:intron 35.0%
ATACAAGTATAGAGAGTGGT+AGG + chr3_3:31641540-31641559 None:intergenic 35.0%
GTAGTTGATTACAATGTCAC+AGG - chr3_3:31641566-31641585 Msa0449210:intron 35.0%
AATATGCAGGCAATACTTCA+CGG + chr3_3:31641696-31641715 None:intergenic 35.0%
!! AATTGATGGGCTAAATATGC+AGG + chr3_3:31641709-31641728 None:intergenic 35.0%
!!! GCTTGATTTGGGTAAGATTT+TGG - chr3_3:31641789-31641808 Msa0449210:CDS 35.0%
TACGAAATGTTGTCGAATAG+AGG - chr3_3:31642057-31642076 Msa0449210:intron 35.0%
CAAGTTCCAAATGTTCTCAT+TGG - chr3_3:31642615-31642634 Msa0449210:intron 35.0%
! TGAAGATGATGATGATCAAG+AGG - chr3_3:31642661-31642680 Msa0449210:intron 35.0%
GAGTATCTTAGTGGTCTTTA+GGG - chr3_3:31642774-31642793 Msa0449210:CDS 35.0%
AGTATCTTAGTGGTCTTTAG+GGG - chr3_3:31642775-31642794 Msa0449210:CDS 35.0%
AAATAAGGTTTACGCCCAAA+GGG + chr3_3:31642835-31642854 None:intergenic 35.0%
TAAATAAGGTTTACGCCCAA+AGG + chr3_3:31642836-31642855 None:intergenic 35.0%
TGTGTGTGTGTGTCTAACAA+CGG + chr3_3:31638403-31638422 None:intergenic 40.0%
! TTTTCTTCGAGCGTGAATGA+GGG + chr3_3:31638480-31638499 None:intergenic 40.0%
! GTTGAAGAAACAGAAGGTGT+TGG + chr3_3:31638539-31638558 None:intergenic 40.0%
! ACCTTCTGTTTCTTCAACCA+TGG - chr3_3:31638541-31638560 Msa0449210:three_prime_UTR 40.0%
ACCATGGTTGAAGAAACAGA+AGG + chr3_3:31638545-31638564 None:intergenic 40.0%
! TTCTGTTTCTTCAACCATGG+TGG - chr3_3:31638544-31638563 Msa0449210:three_prime_UTR 40.0%
TCTCTCCATTGAAAAGTTGC+AGG - chr3_3:31638637-31638656 Msa0449210:three_prime_UTR 40.0%
! TGTGTGGTTCACCCTAATTT+TGG - chr3_3:31638846-31638865 Msa0449210:intron 40.0%
! GTGTGGTTCACCCTAATTTT+GGG - chr3_3:31638847-31638866 Msa0449210:intron 40.0%
CTAAGGGTTCACCCAAAATT+AGG + chr3_3:31638861-31638880 None:intergenic 40.0%
!! CTAATTTTGGGTGAACCCTT+AGG - chr3_3:31638859-31638878 Msa0449210:intron 40.0%
CTTCTGTATGTTGGATCCTA+AGG + chr3_3:31638878-31638897 None:intergenic 40.0%
ATGGTAACAGATCAATGAGG+AGG - chr3_3:31639300-31639319 Msa0449210:intron 40.0%
!! TTTTTGAGCCATCCTGTTCT+TGG - chr3_3:31639549-31639568 Msa0449210:intron 40.0%
TTCAAGAGATCACCAAGAAC+AGG + chr3_3:31639564-31639583 None:intergenic 40.0%
GCATTTAATCTCTCTTGAGG+TGG - chr3_3:31640305-31640324 Msa0449210:intron 40.0%
TGTTGTTCCTTCTTCAAGGA+AGG + chr3_3:31640555-31640574 None:intergenic 40.0%
!! GCTTTGTTGTTCCTTCTTCA+AGG + chr3_3:31640559-31640578 None:intergenic 40.0%
! TTTCCATTTTATGGGTGTGG+CGG + chr3_3:31640585-31640604 None:intergenic 40.0%
! CTCTTTCCATTTTATGGGTG+TGG + chr3_3:31640588-31640607 None:intergenic 40.0%
CACACCCATAAAATGGAAAG+AGG - chr3_3:31640586-31640605 Msa0449210:CDS 40.0%
! CTTGCCCTCTTTCCATTTTA+TGG + chr3_3:31640594-31640613 None:intergenic 40.0%
CATAAAATGGAAAGAGGGCA+AGG - chr3_3:31640592-31640611 Msa0449210:CDS 40.0%
CTTCTCATGACTAACTCCAT+TGG + chr3_3:31640737-31640756 None:intergenic 40.0%
GGAGTTAGTCATGAGAAGAA+AGG - chr3_3:31640739-31640758 Msa0449210:intron 40.0%
TAACACCAACCTGATATCAG+AGG + chr3_3:31640779-31640798 None:intergenic 40.0%
! GTTTGGGACACAAATAGAGT+TGG + chr3_3:31640975-31640994 None:intergenic 40.0%
TGTCCCAAACAAACATGGTA+TGG - chr3_3:31640985-31641004 Msa0449210:intron 40.0%
ACCGAGCAGAAAGATGAAAT+GGG - chr3_3:31641227-31641246 Msa0449210:intron 40.0%
ACCCATTTCATCTTTCTGCT+CGG + chr3_3:31641231-31641250 None:intergenic 40.0%
AATGGGTGACATTCATGATG+AGG - chr3_3:31641244-31641263 Msa0449210:intron 40.0%
GTTGATTACAATGTCACAGG+AGG - chr3_3:31641569-31641588 Msa0449210:intron 40.0%
AGTTGTGTTTGCGCTTGATT+TGG - chr3_3:31641777-31641796 Msa0449210:CDS 40.0%
GTTGTGTTTGCGCTTGATTT+GGG - chr3_3:31641778-31641797 Msa0449210:CDS 40.0%
! TTTGGGTAAGATTTTGGGCA+AGG - chr3_3:31641795-31641814 Msa0449210:CDS 40.0%
! TCTAAGATCTGGCATCAACT+AGG - chr3_3:31641911-31641930 Msa0449210:intron 40.0%
GTGCGACTATTTGAAAACAC+TGG + chr3_3:31641983-31642002 None:intergenic 40.0%
TTCCAAATGTTCTCATTGGC+AGG - chr3_3:31642619-31642638 Msa0449210:intron 40.0%
TCCAAATGTTCTCATTGGCA+GGG - chr3_3:31642620-31642639 Msa0449210:intron 40.0%
! GGAGTATCTTAGTGGTCTTT+AGG - chr3_3:31642773-31642792 Msa0449210:CDS 40.0%
AATAAGGTTTACGCCCAAAG+GGG + chr3_3:31642834-31642853 None:intergenic 40.0%
!! TGTGCTTTGAAGGTGATTTC+TGG - chr3_3:31642857-31642876 Msa0449210:five_prime_UTR 40.0%
!!! GGGAAGTGTTAGGGTTTTGA+GGG + chr3_3:31638460-31638479 None:intergenic 45.0%
!!! AGGGAAGTGTTAGGGTTTTG+AGG + chr3_3:31638461-31638480 None:intergenic 45.0%
!! CGTGAATGAGGGAAGTGTTA+GGG + chr3_3:31638469-31638488 None:intergenic 45.0%
! CTTTTCTTCGAGCGTGAATG+AGG + chr3_3:31638481-31638500 None:intergenic 45.0%
GAAAACGCTGAAGAGATCGA+CGG - chr3_3:31638605-31638624 Msa0449210:three_prime_UTR 45.0%
TCATTGCGCTTGTCATACAC+CGG + chr3_3:31639376-31639395 None:intergenic 45.0%
TCAAGTCCATTCCCGATTTC+TGG - chr3_3:31639401-31639420 Msa0449210:intron 45.0%
AGTTAGCCAGAAATCGGGAA+TGG + chr3_3:31639410-31639429 None:intergenic 45.0%
TACCGCAGTTAGCCAGAAAT+CGG + chr3_3:31639416-31639435 None:intergenic 45.0%
AGAGATCACCAAGAACAGGA+TGG + chr3_3:31639560-31639579 None:intergenic 45.0%
! CGACTCCAATCCCTATTTTG+AGG - chr3_3:31640505-31640524 Msa0449210:intron 45.0%
TTACCGCCACACCCATAAAA+TGG - chr3_3:31640579-31640598 Msa0449210:intron 45.0%
!! AACATGAAGGGCATTCCCAA+TGG - chr3_3:31640718-31640737 Msa0449210:intron 45.0%
GTTGGAACCATGCAAAACTC+TGG + chr3_3:31640957-31640976 None:intergenic 45.0%
CCTTACTCGTGAGATAACAC+TGG + chr3_3:31641023-31641042 None:intergenic 45.0%
CCAGTGTTATCTCACGAGTA+AGG - chr3_3:31641020-31641039 Msa0449210:CDS 45.0%
CACCGAGCAGAAAGATGAAA+TGG - chr3_3:31641226-31641245 Msa0449210:intron 45.0%
! TGATGATGAAGCTGGTGATG+CGG - chr3_3:31641614-31641633 Msa0449210:intron 45.0%
! GGTAAGATTTTGGGCAAGGT+GGG - chr3_3:31641799-31641818 Msa0449210:CDS 45.0%
TGTTGTTGTGCTACAGCAGA+GGG - chr3_3:31642081-31642100 Msa0449210:intron 45.0%
GTGAAGCAACTACATAGCTC+TGG + chr3_3:31642509-31642528 None:intergenic 45.0%
TCCCTGCCAATGAGAACATT+TGG + chr3_3:31642624-31642643 None:intergenic 45.0%
ATGTTCTCATTGGCAGGGAA+AGG - chr3_3:31642625-31642644 Msa0449210:intron 45.0%
TAGGGGATGATGAAAGACCA+AGG - chr3_3:31642792-31642811 Msa0449210:CDS 45.0%
GGATGATGAAAGACCAAGGT+TGG - chr3_3:31642796-31642815 Msa0449210:exon 45.0%
! GAAAGACCAAGGTTGGCTAT+TGG - chr3_3:31642803-31642822 Msa0449210:exon 45.0%
GGAAAACCAATAGCCAACCT+TGG + chr3_3:31642812-31642831 None:intergenic 45.0%
!!! GCTATTGGTTTTCCCCCTTT+GGG - chr3_3:31642818-31642837 Msa0449210:five_prime_UTR 45.0%
ATAAGGTTTACGCCCAAAGG+GGG + chr3_3:31642833-31642852 None:intergenic 45.0%
!!! AAAAAAATTAGTTTTTAATT+AGG - chr3_3:31638920-31638939 Msa0449210:intron 5.0%
!! TAAATATCTAAAAAAATAAA+TGG + chr3_3:31640284-31640303 None:intergenic 5.0%
!!! GTTTTAATTTATTTATTTTA+AGG - chr3_3:31642742-31642761 Msa0449210:CDS 5.0%
!! GCGTGAATGAGGGAAGTGTT+AGG + chr3_3:31638470-31638489 None:intergenic 50.0%
ACAAATCTCTCCACTGCGCT+AGG - chr3_3:31638504-31638523 Msa0449210:three_prime_UTR 50.0%
CAAATCTCTCCACTGCGCTA+GGG - chr3_3:31638505-31638524 Msa0449210:three_prime_UTR 50.0%
!! TCCCGATTTCTGGCTAACTG+CGG - chr3_3:31639411-31639430 Msa0449210:intron 50.0%
ACCGCAGTTAGCCAGAAATC+GGG + chr3_3:31639415-31639434 None:intergenic 50.0%
AGCTGCCTCTGATATCAGGT+TGG - chr3_3:31640771-31640790 Msa0449210:CDS 50.0%
CATCCTCCTCTGCTTCATCA+GGG + chr3_3:31641596-31641615 None:intergenic 50.0%
TCATCCTCCTCTGCTTCATC+AGG + chr3_3:31641597-31641616 None:intergenic 50.0%
! GAGGAGGATGATGATGAAGC+TGG - chr3_3:31641606-31641625 Msa0449210:intron 50.0%
! GGGTAAGATTTTGGGCAAGG+TGG - chr3_3:31641798-31641817 Msa0449210:CDS 50.0%
GGCAAGGTGGGTATTCAAAG+AGG - chr3_3:31641811-31641830 Msa0449210:intron 50.0%
CTGTTGTTGTGCTACAGCAG+AGG - chr3_3:31642080-31642099 Msa0449210:intron 50.0%
GTTGTTGTGCTACAGCAGAG+GGG - chr3_3:31642082-31642101 Msa0449210:intron 50.0%
!!! GGCTATTGGTTTTCCCCCTT+TGG - chr3_3:31642817-31642836 Msa0449210:five_prime_UTR 50.0%
GGTTTCAAACCCTAGCGCAG+TGG + chr3_3:31638517-31638536 None:intergenic 55.0%
CTTAGACTTGTCGGCCACCA+TGG + chr3_3:31638561-31638580 None:intergenic 55.0%
AGCGAGCTGCCTCTGATATC+AGG - chr3_3:31640767-31640786 Msa0449210:CDS 55.0%
!! CTGCTCGGTGTCACAAAACC+AGG + chr3_3:31641216-31641235 None:intergenic 55.0%
AGAGGATGACGACGATGACG+AGG - chr3_3:31642679-31642698 Msa0449210:intron 55.0%
GGAGGACCCTGATGAAGCAG+AGG - chr3_3:31641587-31641606 Msa0449210:intron 60.0%
GGACCCTGATGAAGCAGAGG+AGG - chr3_3:31641590-31641609 Msa0449210:intron 60.0%
TAACAACGGTGCGCGCGTGC+GGG + chr3_3:31638389-31638408 None:intergenic 65.0%
CTAACAACGGTGCGCGCGTG+CGG + chr3_3:31638390-31638409 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 31638335 31643037 31638335 ID=Msa0449210;Name=Msa0449210
chr3_3 mRNA 31638335 31643037 31638335 ID=Msa0449210-mRNA-1;Parent=Msa0449210;Name=Msa0449210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=225|1|1|1|1|1|10|325|260
chr3_3 exon 31638335 31638731 31638335 ID=Msa0449210-mRNA-1:exon:5838;Parent=Msa0449210-mRNA-1
chr3_3 exon 31639737 31639784 31639737 ID=Msa0449210-mRNA-1:exon:5837;Parent=Msa0449210-mRNA-1
chr3_3 exon 31639908 31639964 31639908 ID=Msa0449210-mRNA-1:exon:5836;Parent=Msa0449210-mRNA-1
chr3_3 exon 31640107 31640167 31640107 ID=Msa0449210-mRNA-1:exon:5835;Parent=Msa0449210-mRNA-1
chr3_3 exon 31640584 31640645 31640584 ID=Msa0449210-mRNA-1:exon:5834;Parent=Msa0449210-mRNA-1
chr3_3 exon 31640759 31640872 31640759 ID=Msa0449210-mRNA-1:exon:5833;Parent=Msa0449210-mRNA-1
chr3_3 exon 31641004 31641075 31641004 ID=Msa0449210-mRNA-1:exon:5832;Parent=Msa0449210-mRNA-1
chr3_3 exon 31641773 31641823 31641773 ID=Msa0449210-mRNA-1:exon:5831;Parent=Msa0449210-mRNA-1
chr3_3 exon 31641940 31642062 31641940 ID=Msa0449210-mRNA-1:exon:5830;Parent=Msa0449210-mRNA-1
chr3_3 exon 31642690 31643037 31642690 ID=Msa0449210-mRNA-1:exon:5829;Parent=Msa0449210-mRNA-1
chr3_3 five_prime_UTR 31642813 31643037 31642813 ID=Msa0449210-mRNA-1:five_prime_utr;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31642690 31642812 31642690 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31641940 31642062 31641940 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31641773 31641823 31641773 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31641004 31641075 31641004 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31640759 31640872 31640759 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31640584 31640645 31640584 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31640107 31640167 31640107 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31639908 31639964 31639908 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31639737 31639784 31639737 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 CDS 31638660 31638731 31638660 ID=Msa0449210-mRNA-1:cds;Parent=Msa0449210-mRNA-1
chr3_3 three_prime_UTR 31638335 31638659 31638335 ID=Msa0449210-mRNA-1:three_prime_utr;Parent=Msa0449210-mRNA-1
Gene Sequence

>Msa0449210

ATGGTGGCCGACAAGTCTAAGAAGTTGAAAGTTTCTGAAAAGGGTGAAAACGCTGAAGAGATCGACGGAGAACTTGTTCTCTCCATTGAAAAGTTGCAGGAAATTCAAGATGAGATTGAAAAGATCAATGAGGAGGCTAGCGATAAAGTTCTCGAAATAGAGCAGAAGTACAATGAAGTAAGGAAACCGGTGTATGACAAGCGCAATGATGTGATCAAGTCCATTCCCGATTTCTGGCTAACTGCGTTTTTGAGCCATCCTGTTCTTGGTGATCTCTTGAATGAAGAAGATCAGAAGATATTTAAGCATTTAATCTCTCTTGAGGTGGAAGATCATAAAGATGTTAAATCAGGCTATTCAATCACATTTAACTTCGACTCCAATCCCTATTTTGAGGATTCAAAACTTGTCAAGACTTTTACCTTCCTTGAAGAAGGAACAACAAAGCTTACCGCCACACCCATAAAATGGAAAGAGGGCAAGGGCATTCCCAATGGAGTTAGTCATGAGAAGAAAGGGAACAAGCGAGCTGCCTCTGATATCAGTTTCTTTACCTGGTTTTGTGACACCGAGCAGAAAGATGAAATGGGTGACATTCATGATGAGATTGCTGAAATGATCAAGGATGATTTATGGCCGAATCCGCTCAATTATTTCAACAGTGAGGACCCTGATGAAGCAGAGGAGGATGATGATGAAGCTGGTGATGCGGGAAAGGATGATGATGACTCTGAAGATGATGATGATCAAGAGGATGACGACGATGACGAGGAAGAAGAATAG

Protein sequence

>Msa0449210

MVADKSKKLKVSEKGENAEEIDGELVLSIEKLQEIQDEIEKINEEASDKVLEIEQKYNEVRKPVYDKRNDVIKSIPDFWLTAFLSHPVLGDLLNEEDQKIFKHLISLEVEDHKDVKSGYSITFNFDSNPYFEDSKLVKTFTFLEEGTTKLTATPIKWKEGKGIPNGVSHEKKGNKRAASDISFFTWFCDTEQKDEMGDIHDEIAEMIKDDLWPNPLNYFNSEDPDEAEEDDDEAGDAGKDDDDSEDDDDQEDDDDDEEEE*