AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532070 MtrunA17_Chr8g0380331 99.760 417 1 0 1 417 128 544 0.0 840
Msa0532070 MtrunA17_Chr8g0338121 89.888 178 14 1 72 249 13 186 4.33e-107 317
Msa0532070 MtrunA17_Chr5g0440381 33.820 411 247 7 10 413 140 532 1.38e-65 219
Msa0532070 MtrunA17_Chr7g0272821 30.769 403 253 7 6 407 139 516 1.28e-49 176
Msa0532070 MtrunA17_Chr7g0241881 30.130 385 246 5 24 407 154 516 5.76e-49 174
Msa0532070 MtrunA17_Chr3g0139481 30.696 316 199 4 98 407 171 472 7.01e-39 145
Msa0532070 MtrunA17_Chr3g0123341 27.833 406 265 9 10 407 145 530 3.85e-34 133
Msa0532070 MtrunA17_Chr1g0160221 27.249 389 260 8 21 407 156 523 4.00e-33 130
Msa0532070 MtrunA17_Chr2g0282161 26.044 407 281 7 10 411 136 527 8.66e-33 129
Msa0532070 MtrunA17_Chr7g0214841 24.874 398 270 6 21 408 148 526 7.01e-31 124
Msa0532070 MtrunA17_Chr6g0461541 26.221 389 264 8 21 407 153 520 2.03e-29 120
Msa0532070 MtrunA17_Chr8g0392171 27.931 290 145 7 98 373 36 275 3.51e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532070 AT3G20050.1 89.688 417 43 0 1 417 128 544 0.0 764
Msa0532070 AT3G11830.1 32.603 411 252 5 10 413 140 532 2.32e-59 202
Msa0532070 AT3G11830.2 32.603 411 250 6 10 413 140 530 6.25e-58 199
Msa0532070 AT3G18190.1 31.579 418 258 10 1 407 133 533 1.39e-51 181
Msa0532070 AT5G20890.1 29.847 392 251 6 17 407 148 516 2.70e-42 156
Msa0532070 AT3G02530.1 27.226 393 253 8 28 408 155 526 1.20e-35 138
Msa0532070 AT1G24510.2 27.366 391 260 5 22 407 83 454 1.34e-35 136
Msa0532070 AT1G24510.3 27.366 391 260 5 22 407 106 477 2.70e-35 136
Msa0532070 AT1G24510.1 27.366 391 260 5 22 407 159 530 5.44e-35 136
Msa0532070 AT5G26360.1 26.173 405 283 5 10 411 136 527 3.48e-34 134
Msa0532070 AT5G16070.1 26.434 401 267 7 17 408 144 525 5.98e-34 133
Msa0532070 AT3G03960.1 26.478 389 263 8 21 407 159 526 1.05e-29 121

Find 116 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGCATTATCAGTTTATT+TGG 0.153089 4_1:+6105439 Msa0532070:CDS
CAGTGATTTCTTTGCTAATT+TGG 0.196704 4_1:+6099791 Msa0532070:CDS
ATTAGTTGTGGTTTGGAATT+TGG 0.217076 4_1:+6107130 Msa0532070:three_prime_UTR
GAATACCTTGCTACAACTTT+AGG 0.217589 4_1:+6105461 Msa0532070:CDS
CTGCCCAAGGAATGCCTCTT+AGG 0.219812 4_1:+6101464 Msa0532070:CDS
TCAAACAAATTTCAAGAGTT+TGG 0.239620 4_1:+6107157 Msa0532070:three_prime_UTR
GATGCTGTAATCATGATTAA+AGG 0.288628 4_1:+6103357 Msa0532070:CDS
GGTCTCAACATTTGCTGATA+TGG 0.306308 4_1:+6103263 Msa0532070:intron
CTATCTTTCCAGTACGGGTT+TGG 0.307511 4_1:+6106359 Msa0532070:intron
ACTTACTGCACTTGAAGTTT+TGG 0.311156 4_1:-6103382 None:intergenic
ATGCTACTACCAACCTTGAT+TGG 0.328455 4_1:-6101198 None:intergenic
GCTATATTTATTACCCTTGA+TGG 0.337472 4_1:+6106730 Msa0532070:three_prime_UTR
ATGATTTACATGCCTTTCTA+AGG 0.338184 4_1:+6106933 Msa0532070:three_prime_UTR
GAGCAAAGTCAAAATTATTC+AGG 0.342350 4_1:+6106440 Msa0532070:CDS
CAGACCTGGTTGCAAAATTA+CGG 0.342539 4_1:+6105915 Msa0532070:CDS
CAACGTTGCACCGGTTGCTT+TGG 0.346562 4_1:-6102749 None:intergenic
TACTTGCTAGTTCTTGTGTA+AGG 0.351534 4_1:+6106664 Msa0532070:three_prime_UTR
CTTTGAGGACATGCTGGTCT+TGG 0.352985 4_1:-6099754 None:intergenic
CAGTTGGATTAGTTGTGGTT+TGG 0.357468 4_1:+6107123 Msa0532070:three_prime_UTR
TTTATTACCCTTGATGGTCT+TGG 0.358081 4_1:+6106736 Msa0532070:three_prime_UTR
AATTGATGACATGGCGCTTA+AGG 0.368284 4_1:+6101971 Msa0532070:CDS
AATGGTTATGCTCTTAATAC+TGG 0.369065 4_1:+6101436 Msa0532070:CDS
CTAAGGCAGCGTTTGGTTTG+TGG 0.374452 4_1:+6106950 Msa0532070:three_prime_UTR
TGCCTTTCTAAGGCAGCGTT+TGG 0.376892 4_1:+6106943 Msa0532070:three_prime_UTR
GTGTAAGGGAGGGCGTTTCC+AGG 0.381612 4_1:+6106679 Msa0532070:three_prime_UTR
AACCAGGTCTGTGGCATCCT+TGG 0.385392 4_1:-6105903 None:intergenic
TTTCAGTACTTTGTTGAGGC+TGG 0.410605 4_1:+6102679 Msa0532070:intron
TAATAAGACTAACACTTTGA+TGG 0.421809 4_1:-6107200 None:intergenic
ATTCAGGTGGTGGCTGGTGG+AGG 0.433679 4_1:+6105407 Msa0532070:intron
CTTGAGAAATCTTACCTTGA+CGG 0.434983 4_1:-6099054 None:intergenic
AGAGAGCTAATGATCTTGTT+AGG 0.440419 4_1:+6098827 Msa0532070:five_prime_UTR
CGTCATGTTGCCAAAGCAAC+CGG 0.451920 4_1:+6102739 Msa0532070:CDS
AATGTTGTTCTGACTACTAA+AGG 0.453936 4_1:+6101948 Msa0532070:CDS
CACTTGTAGGTTGAGAAGCT+TGG 0.454077 4_1:+6099708 Msa0532070:intron
ATTGACAGCTCTTAAACAAT+GGG 0.454576 4_1:-6107071 None:intergenic
AAGTATTAGTTTCTGATCCC+AGG 0.456823 4_1:+6101554 Msa0532070:CDS
AATTGACAGCTCTTAAACAA+TGG 0.459330 4_1:-6107072 None:intergenic
ATGCTGTAATCATGATTAAA+GGG 0.460572 4_1:+6103358 Msa0532070:CDS
AGACCTGGTTGCAAAATTAC+GGG 0.461484 4_1:+6105916 Msa0532070:CDS
TGCTACTACCAACCTTGATT+GGG 0.463080 4_1:-6101197 None:intergenic
TGTAAAGATGACTAACCAAC+GGG 0.463714 4_1:+6101161 Msa0532070:CDS
GTCACCAGCTATCAGCTTTG+AGG 0.466133 4_1:-6099769 None:intergenic
TGTTCTTGTCATGCATTGAC+TGG 0.466342 4_1:+6106906 Msa0532070:three_prime_UTR
AGTTTGTGCAGCATAGTGGC+AGG 0.480386 4_1:-6105939 None:intergenic
ATACCCTAAGAGGCATTCCT+TGG 0.482129 4_1:-6101468 None:intergenic
ACTAGAAACAACTTGGAAGC+TGG 0.485060 4_1:+6106399 Msa0532070:CDS
AATTTACTAGCACAATCAGT+TGG 0.488440 4_1:+6107107 Msa0532070:three_prime_UTR
GCTTGTCAAGGATGAAGGTC+AGG 0.491199 4_1:+6106608 Msa0532070:CDS
ATTACCCTTGATGGTCTTGG+AGG 0.491829 4_1:+6106739 Msa0532070:three_prime_UTR
AGACGAAAAGCTTGCCGTCA+AGG 0.498910 4_1:+6099040 Msa0532070:CDS
GCTTGATCATATCGTCAATC+CGG 0.503371 4_1:-6106587 None:intergenic
AACCAAACGCTGCCTTAGAA+AGG 0.503578 4_1:-6106945 None:intergenic
TGCCCAAGGAATGCCTCTTA+GGG 0.506306 4_1:+6101465 Msa0532070:CDS
TCAGGGAATCAATATATTGA+AGG 0.506625 4_1:+6101378 Msa0532070:intron
TGCTACAACTTTAGGATCGC+GGG 0.508460 4_1:+6105469 Msa0532070:CDS
ATCAAGCTTGTCAAGGATGA+AGG 0.509988 4_1:+6106603 Msa0532070:CDS
TCTATATCCACTGATAATTG+AGG 0.510888 4_1:-6098866 None:intergenic
TTTAGGATCGCGGGAGCAGT+TGG 0.511859 4_1:+6105478 Msa0532070:CDS
ACTTGCTAGTTCTTGTGTAA+GGG 0.512184 4_1:+6106665 Msa0532070:three_prime_UTR
GTTTCCAGGCTATGTTGGTA+TGG 0.514464 4_1:+6106693 Msa0532070:three_prime_UTR
AAGCTGCTATTACTATTCTC+CGG 0.516464 4_1:+6106568 Msa0532070:CDS
TACCCTAAGAGGCATTCCTT+GGG 0.521776 4_1:-6101467 None:intergenic
AATGCCATACCAACATAGCC+TGG 0.523320 4_1:-6106697 None:intergenic
TGACTACATGCTTGATGAGA+TGG 0.525127 4_1:+6104239 Msa0532070:CDS
ATGTAAATTCAGGTGGTGGC+TGG 0.525195 4_1:+6105401 Msa0532070:intron
TGCTAGTTCTTGTGTAAGGG+AGG 0.533805 4_1:+6106668 Msa0532070:three_prime_UTR
CTTTAGTTTGTGCAGCATAG+TGG 0.535439 4_1:-6105943 None:intergenic
AGTATTAGTTTCTGATCCCA+GGG 0.537249 4_1:+6101555 Msa0532070:CDS
CAGAGAGGCTGACATGACTA+AGG 0.538129 4_1:+6101893 Msa0532070:intron
ATGTCCTCAAAGCTGATAGC+TGG 0.539484 4_1:+6099765 Msa0532070:CDS
ATCGAGAAATTACTGAAAGC+TGG 0.540178 4_1:+6101921 Msa0532070:CDS
TTTGCAGGGGATACCCTAAG+AGG 0.545005 4_1:-6101478 None:intergenic
TAAATTCAGGTGGTGGCTGG+TGG 0.548875 4_1:+6105404 Msa0532070:intron
TATCAGCTTTGAGGACATGC+TGG 0.550203 4_1:-6099760 None:intergenic
ACAATCAGTTGGATTAGTTG+TGG 0.550526 4_1:+6107118 Msa0532070:three_prime_UTR
AGGAAAGACTAGAAACAACT+TGG 0.552501 4_1:+6106392 Msa0532070:CDS
TTCTCCCTCCAAGACCATCA+AGG 0.553348 4_1:-6106744 None:intergenic
CAGATAAGAAGCATTTATCA+AGG 0.555568 4_1:+6105966 Msa0532070:CDS
TCAACATTTGCTGATATGGA+AGG 0.562540 4_1:+6103267 Msa0532070:CDS
TGGTGGACAAATACTTTGCT+TGG 0.568955 4_1:-6107180 None:intergenic
CTGGTTTCAGTACTTTGTTG+AGG 0.569526 4_1:+6102675 Msa0532070:intron
AACATTTGCTGATATGGAAG+GGG 0.570131 4_1:+6103269 Msa0532070:CDS
TGTTGGTATGGCATTTGAAG+AGG 0.571375 4_1:+6106705 Msa0532070:three_prime_UTR
ACGGGTTTGGATCTTTCAGA+AGG 0.572129 4_1:+6106372 Msa0532070:CDS
TATCCACTGATAATTGAGGT+TGG 0.573056 4_1:-6098862 None:intergenic
ATTTCTTGGAACTGCAGATG+AGG 0.576660 4_1:+6103311 Msa0532070:CDS
TTACCCTTGATGGTCTTGGA+GGG 0.576982 4_1:+6106740 Msa0532070:three_prime_UTR
GTCTCTGTTAATCATTCCAA+AGG 0.580186 4_1:+6105520 Msa0532070:CDS
AATACTGGACGTGCTGCCCA+AGG 0.580408 4_1:+6101451 Msa0532070:CDS
CAACATTTGCTGATATGGAA+GGG 0.582382 4_1:+6103268 Msa0532070:CDS
TCTCCCTCCAAGACCATCAA+GGG 0.584714 4_1:-6106743 None:intergenic
GCTAGTTCTTGTGTAAGGGA+GGG 0.585888 4_1:+6106669 Msa0532070:three_prime_UTR
GGTATCTGACTTCACCCCGT+TGG 0.587784 4_1:-6101176 None:intergenic
GCTTGCTGTCAATGCTGCCA+AGG 0.590241 4_1:+6105886 Msa0532070:CDS
AGGGCGTTTCCAGGCTATGT+TGG 0.591649 4_1:+6106688 Msa0532070:three_prime_UTR
AAGGCATACCAACGTTGCAC+CGG 0.591908 4_1:-6102758 None:intergenic
AACTGCAGATGAGGTTGTTG+AGG 0.595904 4_1:+6103320 Msa0532070:CDS
TAGGTCTCGTTAATTCTCAG+AGG 0.599649 4_1:+6104210 Msa0532070:intron
CAAAGCAACCGGTGCAACGT+TGG 0.602298 4_1:+6102750 Msa0532070:CDS
TGAAGTCAGATACCCAATCA+AGG 0.604042 4_1:+6101185 Msa0532070:CDS
ATTTGCTGATATGGAAGGGG+AGG 0.604182 4_1:+6103272 Msa0532070:CDS
TGCCAAGGATGCCACAGACC+TGG 0.605336 4_1:+6105901 Msa0532070:CDS
CGATATGATCAAGCTTGTCA+AGG 0.608330 4_1:+6106596 Msa0532070:CDS
ATTCATGCAGGTTGTAGAAG+CGG 0.617634 4_1:+6101131 Msa0532070:intron
AACTCGAGAAAATTCGCCAA+AGG 0.625053 4_1:+6101578 Msa0532070:CDS
TAAGACTAACACTTTGATGG+TGG 0.628842 4_1:-6107197 None:intergenic
TTGCTACAACTTTAGGATCG+CGG 0.632065 4_1:+6105468 Msa0532070:CDS
TGGAATGATTAACAGAGACT+CGG 0.632335 4_1:-6105516 None:intergenic
CTGTAAAGATGACTAACCAA+CGG 0.633990 4_1:+6101160 Msa0532070:CDS
CATCCAACCTCAATTATCAG+TGG 0.640722 4_1:+6098859 Msa0532070:five_prime_UTR
TCTGCAGTTCCAAGAAATGA+CGG 0.640766 4_1:-6103306 None:intergenic
ATCAATATATTGAAGGCACA+TGG 0.646632 4_1:+6101385 Msa0532070:CDS
TACTAAAGGAATTGATGACA+TGG 0.657873 4_1:+6101962 Msa0532070:CDS
GCGATCCTAAAGTTGTAGCA+AGG 0.663247 4_1:-6105466 None:intergenic
CAATTGCTGTGAGACGTGTG+CGG 0.806188 4_1:+6102704 Msa0532070:CDS
GTAAAGATGACTAACCAACG+GGG 0.853539 4_1:+6101162 Msa0532070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATAAATAATATAATA+TGG - chr4_1:6104832-6104851 None:intergenic 0.0%
!! TATTATATTATTTATTTATA+TGG + chr4_1:6104832-6104851 Msa0532070:intron 0.0%
!! ATTATATTATTTATTTATAT+GGG + chr4_1:6104833-6104852 Msa0532070:intron 0.0%
!!! AAACTAGTATTTTTAAAATA+TGG - chr4_1:6099899-6099918 None:intergenic 10.0%
!!! TACTAAATTTTACAAATTTA+GGG + chr4_1:6100538-6100557 Msa0532070:intron 10.0%
!! AATAGATTTAAATTAAACAA+AGG - chr4_1:6102780-6102799 None:intergenic 10.0%
!!! AAATTATATCATTTAAAATC+TGG + chr4_1:6104138-6104157 Msa0532070:intron 10.0%
!! TATTTATTAATAGGTAAATA+TGG - chr4_1:6104708-6104727 None:intergenic 10.0%
!!! AATTTTTAATATCATAAGTT+AGG + chr4_1:6105183-6105202 Msa0532070:intron 10.0%
!! TCATACTAACTATTATTATT+AGG + chr4_1:6100210-6100229 Msa0532070:intron 15.0%
!!! ATGTTTTAAATCATACTAAA+TGG + chr4_1:6100251-6100270 Msa0532070:intron 15.0%
!!! CTACTAAATTTTACAAATTT+AGG + chr4_1:6100537-6100556 Msa0532070:intron 15.0%
!!! TTTTAAAACTTTGAGAATAA+AGG - chr4_1:6100708-6100727 None:intergenic 15.0%
!! ATTTATTCATACTATATCAA+AGG - chr4_1:6101659-6101678 None:intergenic 15.0%
!! AACATTATTATTAATCATTG+TGG + chr4_1:6101763-6101782 Msa0532070:intron 15.0%
!!! ATTTTGAGAAAAAGAATAAA+TGG + chr4_1:6102310-6102329 Msa0532070:intron 15.0%
!!! TTAATAGTATTTTTTGTATC+TGG - chr4_1:6103736-6103755 None:intergenic 15.0%
!!! ATATAACTCATTTTATCATA+AGG - chr4_1:6104582-6104601 None:intergenic 15.0%
!! TCATATTTACCTATTAAAAA+AGG + chr4_1:6104629-6104648 Msa0532070:intron 15.0%
!! CATATTTACCTATTAAAAAA+GGG + chr4_1:6104630-6104649 Msa0532070:intron 15.0%
!!! TTTTATTTTATTTGCTTGAA+TGG + chr4_1:6105564-6105583 Msa0532070:intron 15.0%
!! AGCATTAAAAATGTATATAT+TGG + chr4_1:6105842-6105861 Msa0532070:intron 15.0%
!! GAAGACAAATAAAATTGAAA+AGG - chr4_1:6098907-6098926 None:intergenic 20.0%
!!! TCTAAGACTATGAATTTAAT+TGG + chr4_1:6098930-6098949 Msa0532070:intron 20.0%
!! CTAAGACTATGAATTTAATT+GGG + chr4_1:6098931-6098950 Msa0532070:intron 20.0%
!!! TTTTTCCTATACATTTGTTA+GGG + chr4_1:6099083-6099102 Msa0532070:intron 20.0%
!! AATCACAAACATAAACAAAA+AGG + chr4_1:6099350-6099369 Msa0532070:intron 20.0%
!! TGTATATAAGCTTAAACAAT+TGG - chr4_1:6099930-6099949 None:intergenic 20.0%
!!! TTAATCTCTCAAATTTTACT+TGG + chr4_1:6099959-6099978 Msa0532070:intron 20.0%
!! ATGATAATTATAACTGTGAT+GGG - chr4_1:6100038-6100057 None:intergenic 20.0%
!! TATGATAATTATAACTGTGA+TGG - chr4_1:6100039-6100058 None:intergenic 20.0%
!! AGTTCAAAATTTGCATTTAA+TGG + chr4_1:6100302-6100321 Msa0532070:intron 20.0%
!!! AAATTGATGGAATAGTTTTA+TGG + chr4_1:6100449-6100468 Msa0532070:intron 20.0%
!!! TAGAAGAAATCATTTTTTAG+GGG - chr4_1:6100520-6100539 None:intergenic 20.0%
!!! GTAGAAGAAATCATTTTTTA+GGG - chr4_1:6100521-6100540 None:intergenic 20.0%
!!! AGTAGAAGAAATCATTTTTT+AGG - chr4_1:6100522-6100541 None:intergenic 20.0%
!!! AATTTTACAAATTTAGGGAA+TGG + chr4_1:6100543-6100562 Msa0532070:intron 20.0%
!! ATAAATAAAGGGAACATAAT+GGG - chr4_1:6100574-6100593 None:intergenic 20.0%
!! AATAAATAAAGGGAACATAA+TGG - chr4_1:6100575-6100594 None:intergenic 20.0%
!!! GTGTTGGTTAAATAAATAAA+GGG - chr4_1:6100585-6100604 None:intergenic 20.0%
!!! GTTCTAAATATTGATTGAAA+AGG + chr4_1:6100803-6100822 Msa0532070:intron 20.0%
!!! ACTGCTTTTAATAATTACAT+TGG - chr4_1:6100962-6100981 None:intergenic 20.0%
!!! AATTCTGTTTCATTTTGATT+CGG + chr4_1:6101352-6101371 Msa0532070:intron 20.0%
!! AAACGATTATTATTTAGAGA+CGG - chr4_1:6102099-6102118 None:intergenic 20.0%
!! CTCTAAATAATAATCGTTTA+AGG + chr4_1:6102100-6102119 Msa0532070:intron 20.0%
!!! ATAAATTGTGTTGATTTTGA+TGG + chr4_1:6102148-6102167 Msa0532070:intron 20.0%
!! AAAAATAATAAATGCTGCAT+TGG + chr4_1:6102269-6102288 Msa0532070:intron 20.0%
!! ACAAGAACAAACAAAAAAAA+AGG - chr4_1:6102383-6102402 None:intergenic 20.0%
!! GTTAGTAATATTGAAAAAGT+TGG - chr4_1:6102446-6102465 None:intergenic 20.0%
!!! ATATAATATTGGCTATGTTA+TGG + chr4_1:6102896-6102915 Msa0532070:intron 20.0%
!!! GTAAAAGTACAAAAATATTG+AGG + chr4_1:6103499-6103518 Msa0532070:intron 20.0%
!! ATATAATTAGAATTCTGATC+CGG - chr4_1:6103974-6103993 None:intergenic 20.0%
!! ATCTAGCTATAAATTCTATT+TGG + chr4_1:6104331-6104350 Msa0532070:intron 20.0%
!!! GAAACTAACATTTTCAATTT+TGG - chr4_1:6104372-6104391 None:intergenic 20.0%
!! TATTAATAGGTAAATATGGT+GGG - chr4_1:6104704-6104723 None:intergenic 20.0%
!! TTATTAATAGGTAAATATGG+TGG - chr4_1:6104705-6104724 None:intergenic 20.0%
!! GTTAAAACTAGTATTATATG+TGG - chr4_1:6104790-6104809 None:intergenic 20.0%
!! TTTATTTATATGGGTAAAGA+TGG + chr4_1:6104842-6104861 Msa0532070:intron 20.0%
!! ATACACTGGTATTAAATTAT+TGG - chr4_1:6105674-6105693 None:intergenic 20.0%
!! ATCAAACTAGAAAACTATTA+AGG - chr4_1:6106161-6106180 None:intergenic 20.0%
!!! CTTTTTTTTTTGAAAGATTG+TGG + chr4_1:6106793-6106812 Msa0532070:intron 20.0%
!!! CTTTTATTTCTTTACAAGTT+TGG + chr4_1:6106823-6106842 Msa0532070:three_prime_UTR 20.0%
!! TATGCTTCTATCAAAAAAAT+TGG - chr4_1:6107047-6107066 None:intergenic 20.0%
! CTAACAAATGTATAGGAAAA+AGG - chr4_1:6099084-6099103 None:intergenic 25.0%
!! CTTTTTCCTATACATTTGTT+AGG + chr4_1:6099082-6099101 Msa0532070:intron 25.0%
!!! TTTTCCTATACATTTGTTAG+GGG + chr4_1:6099084-6099103 Msa0532070:intron 25.0%
! AAGCATATCAAAACAAAATC+AGG - chr4_1:6099308-6099327 None:intergenic 25.0%
! TGTGATTTAAACATGAAAAC+AGG - chr4_1:6099337-6099356 None:intergenic 25.0%
! TGATAATTATAACTGTGATG+GGG - chr4_1:6100037-6100056 None:intergenic 25.0%
! AAGGAATTCAAGTATATCAT+TGG + chr4_1:6100105-6100124 Msa0532070:intron 25.0%
! AAACCCATAGAAATTGAAAT+GGG + chr4_1:6100426-6100445 Msa0532070:intron 25.0%
! TTTCCCATTTCAATTTCTAT+GGG - chr4_1:6100432-6100451 None:intergenic 25.0%
! ATTTCCCATTTCAATTTCTA+TGG - chr4_1:6100433-6100452 None:intergenic 25.0%
! AAATTGAAATGGGAAATTGA+TGG + chr4_1:6100436-6100455 Msa0532070:intron 25.0%
! TAAATAAAGGGAACATAATG+GGG - chr4_1:6100573-6100592 None:intergenic 25.0%
!!! GGTGTTGGTTAAATAAATAA+AGG - chr4_1:6100586-6100605 None:intergenic 25.0%
!! CAGTATAACTTTTGTAATCT+CGG + chr4_1:6100936-6100955 Msa0532070:intron 25.0%
!!! TCTTTTTTGATTGAGTTTTC+TGG + chr4_1:6101050-6101069 Msa0532070:intron 25.0%
!!! ATTCTGTTTCATTTTGATTC+GGG + chr4_1:6101353-6101372 Msa0532070:intron 25.0%
!! ACGATTTTTCTCTTTAAACA+CGG + chr4_1:6102026-6102045 Msa0532070:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr4_1:6102200-6102219 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - chr4_1:6102201-6102220 None:intergenic 25.0%
! AGAACAGGTAATATAAAAAC+AGG - chr4_1:6102590-6102609 None:intergenic 25.0%
! TAAACACTTAGTTAAATGAG+TGG - chr4_1:6102637-6102656 None:intergenic 25.0%
! TGTTAGATAATCTAGTAAGT+TGG + chr4_1:6102809-6102828 Msa0532070:intron 25.0%
! TCTGCAGTTGAATATAATAT+TGG + chr4_1:6102885-6102904 Msa0532070:intron 25.0%
!!! TCTTTTTTTAAGCCTGAATT+CGG + chr4_1:6103030-6103049 Msa0532070:intron 25.0%
! ATGCTGTAATCATGATTAAA+GGG + chr4_1:6103358-6103377 Msa0532070:CDS 25.0%
! TTGTATCTGGCATTTAAAAA+TGG - chr4_1:6103723-6103742 None:intergenic 25.0%
! TATAATTAGAATTCTGATCC+GGG - chr4_1:6103973-6103992 None:intergenic 25.0%
! ATAGAAATTCCAAGAAAATG+TGG + chr4_1:6104023-6104042 Msa0532070:intron 25.0%
! TAACATTATTGCAATGACAA+TGG + chr4_1:6104052-6104071 Msa0532070:intron 25.0%
! AACATTATTGCAATGACAAT+GGG + chr4_1:6104053-6104072 Msa0532070:intron 25.0%
!! TGATAAATTTTGCAAAAGAG+TGG + chr4_1:6104102-6104121 Msa0532070:intron 25.0%
! AATTTATAGCTAGATAATGC+AGG - chr4_1:6104326-6104345 None:intergenic 25.0%
! GTAAAAGGAAAGAATGATTA+AGG + chr4_1:6104445-6104464 Msa0532070:intron 25.0%
! GGAATAAGTGAAAAAATGAA+AGG + chr4_1:6104520-6104539 Msa0532070:intron 25.0%
! GAGAATGAATATTTGATTGT+AGG + chr4_1:6104753-6104772 Msa0532070:intron 25.0%
!!! AAACTTGGGTTTTGTTTTAT+TGG + chr4_1:6105096-6105115 Msa0532070:intron 25.0%
!! AATTGTGATTAGACTTTTGA+TGG + chr4_1:6105251-6105270 Msa0532070:intron 25.0%
!! AATTTGTTTGCAATCTTCAT+TGG + chr4_1:6105277-6105296 Msa0532070:intron 25.0%
!!! AAAAGTATCGTAAGAATGAA+CGG - chr4_1:6105336-6105355 None:intergenic 25.0%
!! TGGTATTAAATTATTGGTCT+GGG - chr4_1:6105668-6105687 None:intergenic 25.0%
! ACTATTAGACAATTATACAC+TGG - chr4_1:6105688-6105707 None:intergenic 25.0%
! AGCAGCTAAAGTTAAATAAT+TGG - chr4_1:6105766-6105785 None:intergenic 25.0%
!! TCTAGTTTGATTAGAGATTA+TGG + chr4_1:6106170-6106189 Msa0532070:intron 25.0%
!!! AGAATGTTTTGTTTTTCTTG+TGG + chr4_1:6106763-6106782 Msa0532070:three_prime_UTR 25.0%
! TTTGTCTAACAGTTAAAAAG+TGG + chr4_1:6106880-6106899 Msa0532070:three_prime_UTR 25.0%
! TCAAACAAATTTCAAGAGTT+TGG + chr4_1:6107157-6107176 Msa0532070:three_prime_UTR 25.0%
! TAATAAGACTAACACTTTGA+TGG - chr4_1:6107203-6107222 None:intergenic 25.0%
TCTATATCCACTGATAATTG+AGG - chr4_1:6098869-6098888 None:intergenic 30.0%
!! CTTTTCTCACTTTTCTTAGA+TGG + chr4_1:6099111-6099130 Msa0532070:intron 30.0%
GGATGTTCATAGTAATAAGA+AGG - chr4_1:6099287-6099306 None:intergenic 30.0%
GTAGCTCAAGTAGTTAATTT+GGG - chr4_1:6099506-6099525 None:intergenic 30.0%
TGTAGCTCAAGTAGTTAATT+TGG - chr4_1:6099507-6099526 None:intergenic 30.0%
TAATGAAAGCTTGCATAACT+TGG + chr4_1:6099590-6099609 Msa0532070:intron 30.0%
CAGTGATTTCTTTGCTAATT+TGG + chr4_1:6099791-6099810 Msa0532070:CDS 30.0%
ATGAACTTATCAACGTTCTA+TGG + chr4_1:6100326-6100345 Msa0532070:intron 30.0%
AGTAATTGTTGCTCCATAAT+TGG + chr4_1:6100386-6100405 Msa0532070:intron 30.0%
GAAACCCATAGAAATTGAAA+TGG + chr4_1:6100425-6100444 Msa0532070:intron 30.0%
ATTCATTGAGATTAGTAGAG+AGG + chr4_1:6100476-6100495 Msa0532070:intron 30.0%
AAATAAAGGGAACATAATGG+GGG - chr4_1:6100572-6100591 None:intergenic 30.0%
GAGTGAAATCAATAGATCAA+AGG - chr4_1:6100910-6100929 None:intergenic 30.0%
TCAGGGAATCAATATATTGA+AGG + chr4_1:6101378-6101397 Msa0532070:intron 30.0%
! ATCAATATATTGAAGGCACA+TGG + chr4_1:6101385-6101404 Msa0532070:CDS 30.0%
AATGGTTATGCTCTTAATAC+TGG + chr4_1:6101436-6101455 Msa0532070:CDS 30.0%
TCAGAAGACAAAAATGCAAT+TGG + chr4_1:6101525-6101544 Msa0532070:CDS 30.0%
CAGAAGACAAAAATGCAATT+GGG + chr4_1:6101526-6101545 Msa0532070:CDS 30.0%
TAGGAAGGTAATACATAGAA+CGG - chr4_1:6101622-6101641 None:intergenic 30.0%
CTATATCAAAGGAAAGATAG+TGG - chr4_1:6101648-6101667 None:intergenic 30.0%
!! ATTCAAAGTACTGTTTAAGC+TGG + chr4_1:6101739-6101758 Msa0532070:intron 30.0%
AATGTTGTTCTGACTACTAA+AGG + chr4_1:6101948-6101967 Msa0532070:CDS 30.0%
! TACTAAAGGAATTGATGACA+TGG + chr4_1:6101962-6101981 Msa0532070:CDS 30.0%
ATCGTTAGAATAAGTACTAG+TGG - chr4_1:6102011-6102030 None:intergenic 30.0%
GATTATTATTTAGAGACGGA+GGG - chr4_1:6102095-6102114 None:intergenic 30.0%
! AATCGTTTAAGGTTTATGCA+CGG + chr4_1:6102111-6102130 Msa0532070:intron 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr4_1:6102197-6102216 Msa0532070:intron 30.0%
AAGAGACAATTATTGTGAGA+CGG + chr4_1:6102335-6102354 Msa0532070:intron 30.0%
TGTTTGTTCTTGTGCTATAT+AGG + chr4_1:6102390-6102409 Msa0532070:intron 30.0%
! TTTTCAGATATCAAGATGAG+TGG - chr4_1:6102416-6102435 None:intergenic 30.0%
!! ACACTATACTTTGAGATCTA+TGG + chr4_1:6102488-6102507 Msa0532070:intron 30.0%
TATTCAACTGCAGAAGAAAA+GGG - chr4_1:6102879-6102898 None:intergenic 30.0%
ATATTCAACTGCAGAAGAAA+AGG - chr4_1:6102880-6102899 None:intergenic 30.0%
ATCAACATCTACTTAATGCA+TGG - chr4_1:6102950-6102969 None:intergenic 30.0%
TAGATATTTGATGTCTATCG+AGG + chr4_1:6103100-6103119 Msa0532070:intron 30.0%
AGATATTTGATGTCTATCGA+GGG + chr4_1:6103101-6103120 Msa0532070:intron 30.0%
!! TATTTGTGATTGCTTGTTGT+AGG + chr4_1:6103242-6103261 Msa0532070:intron 30.0%
GATGCTGTAATCATGATTAA+AGG + chr4_1:6103357-6103376 Msa0532070:CDS 30.0%
AAAAAATTCAACCCAATCCT+CGG - chr4_1:6103418-6103437 None:intergenic 30.0%
! CATTAAGACAGAAAAAGTAC+AGG + chr4_1:6103456-6103475 Msa0532070:intron 30.0%
GTTAGGTAATGTTGTAGAAA+TGG - chr4_1:6103773-6103792 None:intergenic 30.0%
!! TACTTTTATCTTTGAAGGTG+TGG + chr4_1:6103796-6103815 Msa0532070:intron 30.0%
TGAAACTGTCCAAATAAAGA+GGG + chr4_1:6103925-6103944 Msa0532070:intron 30.0%
TTATTAGCACCCTCTTTATT+TGG - chr4_1:6103937-6103956 None:intergenic 30.0%
! TTAACGAATCCACATTTTCT+TGG - chr4_1:6104035-6104054 None:intergenic 30.0%
! TTGACTATGTTTTCCTCTTT+AGG + chr4_1:6104191-6104210 Msa0532070:intron 30.0%
TTGAGAGGAAAGAAAGTAAA+AGG + chr4_1:6104430-6104449 Msa0532070:intron 30.0%
GAAAGTGAATAGAAAGTGAA+AGG + chr4_1:6104471-6104490 Msa0532070:intron 30.0%
! AAGGCAAGTAAGATGATTTT+TGG + chr4_1:6104490-6104509 Msa0532070:intron 30.0%
! AGGCAAGTAAGATGATTTTT+GGG + chr4_1:6104491-6104510 Msa0532070:intron 30.0%
!!! AAGATGATTTTTGGGTTGTT+TGG + chr4_1:6104499-6104518 Msa0532070:intron 30.0%
GAAAATTAAACCAATCGTCA+AGG + chr4_1:6105118-6105137 Msa0532070:intron 30.0%
TGCTTGGTTAATGTAAATTC+AGG + chr4_1:6105391-6105410 Msa0532070:intron 30.0%
TTGGTTAATGTAAATTCAGG+TGG + chr4_1:6105394-6105413 Msa0532070:intron 30.0%
AGCAGCATTATCAGTTTATT+TGG + chr4_1:6105439-6105458 Msa0532070:CDS 30.0%
CTTGATTGTGCATATAACTA+GGG + chr4_1:6105604-6105623 Msa0532070:intron 30.0%
!! ACACTAATGGTGTCAAATTT+TGG + chr4_1:6105642-6105661 Msa0532070:intron 30.0%
CTGGTATTAAATTATTGGTC+TGG - chr4_1:6105669-6105688 None:intergenic 30.0%
! GTCCGCGTTATAAAAATTTT+TGG + chr4_1:6105740-6105759 Msa0532070:intron 30.0%
! GGCCAAAAATTTTTATAACG+CGG - chr4_1:6105745-6105764 None:intergenic 30.0%
! ATATATTGGCAACACTTTTC+TGG + chr4_1:6105856-6105875 Msa0532070:intron 30.0%
!! CAGATAAGAAGCATTTATCA+AGG + chr4_1:6105966-6105985 Msa0532070:CDS 30.0%
! GAAGCATTTATCAAGGTAAT+TGG + chr4_1:6105973-6105992 Msa0532070:intron 30.0%
!! TAAGGAGAGTACTCATATAT+TGG - chr4_1:6106143-6106162 None:intergenic 30.0%
GAGCAAAGTCAAAATTATTC+AGG + chr4_1:6106440-6106459 Msa0532070:CDS 30.0%
! GTATTGAAAGCTTTATGTTG+AGG - chr4_1:6106499-6106518 None:intergenic 30.0%
AGTTGCAAACTGAGATAAAT+GGG - chr4_1:6106547-6106566 None:intergenic 30.0%
! AGTGTGTACTTGAATTTTGA+CGG + chr4_1:6106637-6106656 Msa0532070:exon 30.0%
GCTATATTTATTACCCTTGA+TGG + chr4_1:6106730-6106749 Msa0532070:three_prime_UTR 30.0%
ATGATTTACATGCCTTTCTA+AGG + chr4_1:6106933-6106952 Msa0532070:three_prime_UTR 30.0%
! TTTTTAACGTAAGAACGTAG+TGG + chr4_1:6107002-6107021 Msa0532070:three_prime_UTR 30.0%
! TTTTAACGTAAGAACGTAGT+GGG + chr4_1:6107003-6107022 Msa0532070:three_prime_UTR 30.0%
ATTGACAGCTCTTAAACAAT+GGG - chr4_1:6107074-6107093 None:intergenic 30.0%
AATTGACAGCTCTTAAACAA+TGG - chr4_1:6107075-6107094 None:intergenic 30.0%
AATTTACTAGCACAATCAGT+TGG + chr4_1:6107107-6107126 Msa0532070:three_prime_UTR 30.0%
! ATTAGTTGTGGTTTGGAATT+TGG + chr4_1:6107130-6107149 Msa0532070:three_prime_UTR 30.0%
AGAGAGCTAATGATCTTGTT+AGG + chr4_1:6098827-6098846 Msa0532070:five_prime_UTR 35.0%
TATCCACTGATAATTGAGGT+TGG - chr4_1:6098865-6098884 None:intergenic 35.0%
CTTGAGAAATCTTACCTTGA+CGG - chr4_1:6099057-6099076 None:intergenic 35.0%
AACACCCCTAACAAATGTAT+AGG - chr4_1:6099091-6099110 None:intergenic 35.0%
CAATGATTTCTAATCCTCTC+TGG + chr4_1:6099182-6099201 Msa0532070:intron 35.0%
! GCATGTTATGTTAGTATCGA+AGG + chr4_1:6099442-6099461 Msa0532070:intron 35.0%
! AGTTAATTTGGGACATCTGA+AGG - chr4_1:6099495-6099514 None:intergenic 35.0%
!!! ATTCTTTTGTGTTGCTTAGC+TGG + chr4_1:6099674-6099693 Msa0532070:intron 35.0%
! GGATTGTTTTCTTCACTTGT+AGG + chr4_1:6099695-6099714 Msa0532070:intron 35.0%
GATGTTGACCAAGCTATATA+TGG + chr4_1:6100000-6100019 Msa0532070:intron 35.0%
AGTAAAGGCCATATATAGCT+TGG - chr4_1:6100011-6100030 None:intergenic 35.0%
AATTATCGCATAGCTTTCGT+AGG + chr4_1:6100058-6100077 Msa0532070:intron 35.0%
! GTATATCATTGGTCTACTCA+CGG + chr4_1:6100116-6100135 Msa0532070:intron 35.0%
!!! CATTTTTTAGGGGAGACTTT+AGG - chr4_1:6100510-6100529 None:intergenic 35.0%
! AATAAAGGGAACATAATGGG+GGG - chr4_1:6100571-6100590 None:intergenic 35.0%
AGCACTCGAACTGAAAAAAA+TGG - chr4_1:6100768-6100787 None:intergenic 35.0%
ATGATGATCATGTCATTGCT+TGG + chr4_1:6100844-6100863 Msa0532070:intron 35.0%
! CTTGGTTGAAACATTTGTTG+TGG + chr4_1:6100862-6100881 Msa0532070:intron 35.0%
!! TTGAAACATTTGTTGTGGAG+AGG + chr4_1:6100867-6100886 Msa0532070:intron 35.0%
!! TGAAACATTTGTTGTGGAGA+GGG + chr4_1:6100868-6100887 Msa0532070:intron 35.0%
TGTGTGTATGAAATTCATGC+AGG + chr4_1:6101119-6101138 Msa0532070:intron 35.0%
CTGTAAAGATGACTAACCAA+CGG + chr4_1:6101160-6101179 Msa0532070:CDS 35.0%
TGTAAAGATGACTAACCAAC+GGG + chr4_1:6101161-6101180 Msa0532070:CDS 35.0%
!!! TTCATTTTGATTCGGGTTTC+AGG + chr4_1:6101360-6101379 Msa0532070:intron 35.0%
!!! TCATTTTGATTCGGGTTTCA+GGG + chr4_1:6101361-6101380 Msa0532070:intron 35.0%
! AGAGACAGCTTTTTGATGAA+TGG + chr4_1:6101418-6101437 Msa0532070:CDS 35.0%
! AAGACAAGCAATTTTTGCAG+GGG - chr4_1:6101494-6101513 None:intergenic 35.0%
! CAAGACAAGCAATTTTTGCA+GGG - chr4_1:6101495-6101514 None:intergenic 35.0%
! TCAAGACAAGCAATTTTTGC+AGG - chr4_1:6101496-6101515 None:intergenic 35.0%
! AAGTATTAGTTTCTGATCCC+AGG + chr4_1:6101554-6101573 Msa0532070:CDS 35.0%
! AGTATTAGTTTCTGATCCCA+GGG + chr4_1:6101555-6101574 Msa0532070:CDS 35.0%
!! AAAGGAAAGATAGTGGAACT+AGG - chr4_1:6101641-6101660 None:intergenic 35.0%
AAATTTGATCGTGCTCGATT+TGG + chr4_1:6101786-6101805 Msa0532070:intron 35.0%
AATTTGATCGTGCTCGATTT+GGG + chr4_1:6101787-6101806 Msa0532070:intron 35.0%
TTAATCCTGCAAAACGACAA+GGG - chr4_1:6101824-6101843 None:intergenic 35.0%
!!! ACTTTTTTCCTCTTTCAGAG+AGG + chr4_1:6101878-6101897 Msa0532070:intron 35.0%
ATCGAGAAATTACTGAAAGC+TGG + chr4_1:6101921-6101940 Msa0532070:CDS 35.0%
CGATTATTATTTAGAGACGG+AGG - chr4_1:6102096-6102115 None:intergenic 35.0%
AGGTTTATGCACGGTTATTA+AGG + chr4_1:6102120-6102139 Msa0532070:intron 35.0%
GAGGTTCTTATCATCAGAAT+TGG - chr4_1:6102468-6102487 None:intergenic 35.0%
AGATCTCAAAGTATAGTGTG+AGG - chr4_1:6102487-6102506 None:intergenic 35.0%
TCCTGCATTAATAGATGTCA+TGG + chr4_1:6102542-6102561 Msa0532070:intron 35.0%
CCTGCATTAATAGATGTCAT+GGG + chr4_1:6102543-6102562 Msa0532070:intron 35.0%
ATGTCATGGGTCATATTGAT+GGG + chr4_1:6102556-6102575 Msa0532070:intron 35.0%
AAACCAGGATTAAAATAGCG+AGG - chr4_1:6102662-6102681 None:intergenic 35.0%
ATTCAACTGCAGAAGAAAAG+GGG - chr4_1:6102878-6102897 None:intergenic 35.0%
ATTCTTCCCTAGTAGAATGA+TGG + chr4_1:6102975-6102994 Msa0532070:intron 35.0%
AGACTACCATCATTCTACTA+GGG - chr4_1:6102984-6103003 None:intergenic 35.0%
AAGACTACCATCATTCTACT+AGG - chr4_1:6102985-6103004 None:intergenic 35.0%
! ATGCATACTAGTTTCCTCTA+TGG + chr4_1:6103201-6103220 Msa0532070:intron 35.0%
! TGCATACTAGTTTCCTCTAT+GGG + chr4_1:6103202-6103221 Msa0532070:intron 35.0%
! TCAACATTTGCTGATATGGA+AGG + chr4_1:6103267-6103286 Msa0532070:CDS 35.0%
! CAACATTTGCTGATATGGAA+GGG + chr4_1:6103268-6103287 Msa0532070:CDS 35.0%
! AACATTTGCTGATATGGAAG+GGG + chr4_1:6103269-6103288 Msa0532070:CDS 35.0%
! ACTTTTGAACCGTCATTTCT+TGG + chr4_1:6103297-6103316 Msa0532070:CDS 35.0%
! ACTTACTGCACTTGAAGTTT+TGG - chr4_1:6103385-6103404 None:intergenic 35.0%
AAAACTTCAAGTGCAGTAAG+TGG + chr4_1:6103384-6103403 Msa0532070:intron 35.0%
GAATCTTCTACAGACAAATG+AGG + chr4_1:6103527-6103546 Msa0532070:intron 35.0%
! AAACTCCCTATCTTTTGCAT+CGG + chr4_1:6103592-6103611 Msa0532070:intron 35.0%
CTAAACCGATGCAAAAGATA+GGG - chr4_1:6103600-6103619 None:intergenic 35.0%
TCTAAACCGATGCAAAAGAT+AGG - chr4_1:6103601-6103620 None:intergenic 35.0%
ATGTTTCACACGAAGCTAAT+TGG + chr4_1:6103638-6103657 Msa0532070:intron 35.0%
GCCTAATCTTACATTGTTGT+GGG + chr4_1:6103660-6103679 Msa0532070:intron 35.0%
CCTAATCTTACATTGTTGTG+GGG + chr4_1:6103661-6103680 Msa0532070:intron 35.0%
GTAATGTTGTAGAAATGGCA+TGG - chr4_1:6103768-6103787 None:intergenic 35.0%
AGTACACTAAAAGTAAGAGC+AGG - chr4_1:6103830-6103849 None:intergenic 35.0%
GTGAAACTGTCCAAATAAAG+AGG + chr4_1:6103924-6103943 Msa0532070:intron 35.0%
TTTGCAAAAGAGTGGTGATA+TGG + chr4_1:6104110-6104129 Msa0532070:intron 35.0%
AGAATTAACGAGACCTAAAG+AGG - chr4_1:6104207-6104226 None:intergenic 35.0%
ATAGCCTAAGTGAATTCTAC+TGG - chr4_1:6104401-6104420 None:intergenic 35.0%
GAATTCACTTAGGCTATGTT+TGG + chr4_1:6104404-6104423 Msa0532070:intron 35.0%
! GTGGAAACATTTTGTAGTGT+GGG + chr4_1:6104903-6104922 Msa0532070:intron 35.0%
GATAAGAAAGAAAGACATGC+AGG - chr4_1:6104930-6104949 None:intergenic 35.0%
TGTTCCATTGAAACAAACGA+TGG + chr4_1:6104954-6104973 Msa0532070:intron 35.0%
AAGAAAGAAGAAGGATGGAT+AGG - chr4_1:6105014-6105033 None:intergenic 35.0%
GTCTTCATTAATGGTACGTT+TGG - chr4_1:6105042-6105061 None:intergenic 35.0%
ACCATTAATGAAGACTCTGT+TGG + chr4_1:6105047-6105066 Msa0532070:intron 35.0%
CCATTAATGAAGACTCTGTT+GGG + chr4_1:6105048-6105067 Msa0532070:intron 35.0%
CATTAATGAAGACTCTGTTG+GGG + chr4_1:6105049-6105068 Msa0532070:intron 35.0%
AATGATCAGATGCCATGAAA+TGG + chr4_1:6105073-6105092 Msa0532070:intron 35.0%
ATGCCATGAAATGGAAACTT+GGG + chr4_1:6105082-6105101 Msa0532070:intron 35.0%
AAACCCAAGTTTCCATTTCA+TGG - chr4_1:6105088-6105107 None:intergenic 35.0%
! CAATCGTCAAGGAGATTTTT+GGG + chr4_1:6105129-6105148 Msa0532070:intron 35.0%
! AATCGTCAAGGAGATTTTTG+GGG + chr4_1:6105130-6105149 Msa0532070:intron 35.0%
GTTAATGTAAATTCAGGTGG+TGG + chr4_1:6105397-6105416 Msa0532070:intron 35.0%
GAATACCTTGCTACAACTTT+AGG + chr4_1:6105461-6105480 Msa0532070:CDS 35.0%
TGGAATGATTAACAGAGACT+CGG - chr4_1:6105519-6105538 None:intergenic 35.0%
GTCTCTGTTAATCATTCCAA+AGG + chr4_1:6105520-6105539 Msa0532070:CDS 35.0%
CTGTTAATCATTCCAAAGGT+AGG + chr4_1:6105524-6105543 Msa0532070:intron 35.0%
GCTTGATTGTGCATATAACT+AGG + chr4_1:6105603-6105622 Msa0532070:intron 35.0%
GTTCTTTGATAAGTAAGCTC+TGG + chr4_1:6105805-6105824 Msa0532070:intron 35.0%
AATTCCCAAACAAACAACAC+AGG - chr4_1:6106054-6106073 None:intergenic 35.0%
!! CACAATTGCTGTTCTAGTTT+CGG + chr4_1:6106276-6106295 Msa0532070:intron 35.0%
AGGAAAGACTAGAAACAACT+TGG + chr4_1:6106392-6106411 Msa0532070:CDS 35.0%
!!! ATTTTGACTTTGCTCATTGC+AGG - chr4_1:6106435-6106454 None:intergenic 35.0%
TTGCAAACTGAGATAAATGG+GGG - chr4_1:6106545-6106564 None:intergenic 35.0%
GTTGCAAACTGAGATAAATG+GGG - chr4_1:6106546-6106565 None:intergenic 35.0%
CAGTTGCAAACTGAGATAAA+TGG - chr4_1:6106548-6106567 None:intergenic 35.0%
AAGCTGCTATTACTATTCTC+CGG + chr4_1:6106568-6106587 Msa0532070:CDS 35.0%
! TACTTGCTAGTTCTTGTGTA+AGG + chr4_1:6106664-6106683 Msa0532070:three_prime_UTR 35.0%
! ACTTGCTAGTTCTTGTGTAA+GGG + chr4_1:6106665-6106684 Msa0532070:three_prime_UTR 35.0%
! TTTATTACCCTTGATGGTCT+TGG + chr4_1:6106736-6106755 Msa0532070:three_prime_UTR 35.0%
! TGGAGCTAATATTTTGCACT+AGG + chr4_1:6106843-6106862 Msa0532070:three_prime_UTR 35.0%
!! ACAATCAGTTGGATTAGTTG+TGG + chr4_1:6107118-6107137 Msa0532070:three_prime_UTR 35.0%
TAAGACTAACACTTTGATGG+TGG - chr4_1:6107200-6107219 None:intergenic 35.0%
CATCCAACCTCAATTATCAG+TGG + chr4_1:6098859-6098878 Msa0532070:five_prime_UTR 40.0%
!! CCATCACTGGCTTACAAATA+TGG - chr4_1:6099155-6099174 None:intergenic 40.0%
CCATATTTGTAAGCCAGTGA+TGG + chr4_1:6099152-6099171 Msa0532070:intron 40.0%
TCATTGTGATCTACCATCAC+TGG - chr4_1:6099168-6099187 None:intergenic 40.0%
ACTACAACATACAGTTGCTC+TGG - chr4_1:6099230-6099249 None:intergenic 40.0%
TTGGGACATCTGAAGGATTT+GGG - chr4_1:6099488-6099507 None:intergenic 40.0%
! TTTGGGACATCTGAAGGATT+TGG - chr4_1:6099489-6099508 None:intergenic 40.0%
TAACTACTTGAGCTACACCT+TGG + chr4_1:6099510-6099529 Msa0532070:intron 40.0%
AACTACTTGAGCTACACCTT+GGG + chr4_1:6099511-6099530 Msa0532070:intron 40.0%
GAATACATATACAGTCCCCA+AGG - chr4_1:6099530-6099549 None:intergenic 40.0%
ATGCTTCCCAGGAAATAAGA+CGG - chr4_1:6099626-6099645 None:intergenic 40.0%
! ACTGTGATGGGGAAAAGTAA+AGG - chr4_1:6100026-6100045 None:intergenic 40.0%
! TTTTCCACTTTCTGCTTGAG+AGG + chr4_1:6100081-6100100 Msa0532070:intron 40.0%
ACTCTAGTTGTGCGTTCAAT+TGG + chr4_1:6100144-6100163 Msa0532070:intron 40.0%
!! CAGCAATGTTCTGAGAGATA+TGG + chr4_1:6100181-6100200 Msa0532070:intron 40.0%
!! TTGCTCCATAATTGGCTTTG+TGG + chr4_1:6100394-6100413 Msa0532070:intron 40.0%
ATCAAAGGGATACAAGGTGT+TGG - chr4_1:6100601-6100620 None:intergenic 40.0%
AGGTAGATCAAAGGGATACA+AGG - chr4_1:6100607-6100626 None:intergenic 40.0%
ATGGCAGTAGGTAGATCAAA+GGG - chr4_1:6100615-6100634 None:intergenic 40.0%
AGTAAGGAAATGATGGCAGT+AGG - chr4_1:6100627-6100646 None:intergenic 40.0%
CCTAAGGAGTAAGGAAATGA+TGG - chr4_1:6100634-6100653 None:intergenic 40.0%
CCATCATTTCCTTACTCCTT+AGG + chr4_1:6100631-6100650 Msa0532070:intron 40.0%
!!! TGATTGAGTTTTCTGGCTGA+AGG + chr4_1:6101057-6101076 Msa0532070:intron 40.0%
!!! AGTTTTCTGGCTGAAGGTTT+AGG + chr4_1:6101063-6101082 Msa0532070:intron 40.0%
ATTCATGCAGGTTGTAGAAG+CGG + chr4_1:6101131-6101150 Msa0532070:intron 40.0%
GTAAAGATGACTAACCAACG+GGG + chr4_1:6101162-6101181 Msa0532070:CDS 40.0%
TGAAGTCAGATACCCAATCA+AGG + chr4_1:6101185-6101204 Msa0532070:CDS 40.0%
TGCTACTACCAACCTTGATT+GGG - chr4_1:6101200-6101219 None:intergenic 40.0%
ATGCTACTACCAACCTTGAT+TGG - chr4_1:6101201-6101220 None:intergenic 40.0%
TTGTCTGATACATTCTCACG+AGG + chr4_1:6101221-6101240 Msa0532070:intron 40.0%
AACTCGAGAAAATTCGCCAA+AGG + chr4_1:6101578-6101597 Msa0532070:CDS 40.0%
!! GAAAGATAGTGGAACTAGGA+AGG - chr4_1:6101637-6101656 None:intergenic 40.0%
! ATTTGATCGTGCTCGATTTG+GGG + chr4_1:6101788-6101807 Msa0532070:intron 40.0%
CTTAATCCTGCAAAACGACA+AGG - chr4_1:6101825-6101844 None:intergenic 40.0%
! AATTGATGACATGGCGCTTA+AGG + chr4_1:6101971-6101990 Msa0532070:CDS 40.0%
AGACAATTATTGTGAGACGG+AGG + chr4_1:6102338-6102357 Msa0532070:intron 40.0%
GACAATTATTGTGAGACGGA+GGG + chr4_1:6102339-6102358 Msa0532070:intron 40.0%
CCCATGACATCTATTAATGC+AGG - chr4_1:6102546-6102565 None:intergenic 40.0%
GATGTCATGGGTCATATTGA+TGG + chr4_1:6102555-6102574 Msa0532070:intron 40.0%
TGTCATGGGTCATATTGATG+GGG + chr4_1:6102557-6102576 Msa0532070:intron 40.0%
CAAGTCATCAGAAACAGAAC+AGG - chr4_1:6102605-6102624 None:intergenic 40.0%
!!! ATGCCTCGCTATTTTAATCC+TGG + chr4_1:6102656-6102675 Msa0532070:intron 40.0%
!! CTCAACAAAGTACTGAAACC+AGG - chr4_1:6102677-6102696 None:intergenic 40.0%
CTGGTTTCAGTACTTTGTTG+AGG + chr4_1:6102675-6102694 Msa0532070:intron 40.0%
TTTCAGTACTTTGTTGAGGC+TGG + chr4_1:6102679-6102698 Msa0532070:intron 40.0%
! AAAAGGGGAGGTACGAAAAA+CGG - chr4_1:6102863-6102882 None:intergenic 40.0%
AGATACAGTGTTCCGAATTC+AGG - chr4_1:6103045-6103064 None:intergenic 40.0%
TCTGTCTTACCATACCCATT+TGG + chr4_1:6103155-6103174 Msa0532070:intron 40.0%
TGAAGTCTGATAACCCATAG+AGG - chr4_1:6103218-6103237 None:intergenic 40.0%
! GGTCTCAACATTTGCTGATA+TGG + chr4_1:6103263-6103282 Msa0532070:intron 40.0%
TCTGCAGTTCCAAGAAATGA+CGG - chr4_1:6103309-6103328 None:intergenic 40.0%
ATTTCTTGGAACTGCAGATG+AGG + chr4_1:6103311-6103330 Msa0532070:CDS 40.0%
GGCCTAATCTTACATTGTTG+TGG + chr4_1:6103659-6103678 Msa0532070:intron 40.0%
CCCCACAACAATGTAAGATT+AGG - chr4_1:6103664-6103683 None:intergenic 40.0%
TAGGTCTCGTTAATTCTCAG+AGG + chr4_1:6104210-6104229 Msa0532070:intron 40.0%
TGACTACATGCTTGATGAGA+TGG + chr4_1:6104239-6104258 Msa0532070:CDS 40.0%
TGTGCCAGTAGAATTCACTT+AGG + chr4_1:6104394-6104413 Msa0532070:intron 40.0%
!!! CCAGGTTGCCCTTTTTTAAT+AGG - chr4_1:6104641-6104660 None:intergenic 40.0%
CCTATTAAAAAAGGGCAACC+TGG + chr4_1:6104638-6104657 Msa0532070:intron 40.0%
! GGTGGAAACATTTTGTAGTG+TGG + chr4_1:6104902-6104921 Msa0532070:intron 40.0%
CCTTCCATCGTTTGTTTCAA+TGG - chr4_1:6104961-6104980 None:intergenic 40.0%
CCATTGAAACAAACGATGGA+AGG + chr4_1:6104958-6104977 Msa0532070:intron 40.0%
AAGGATGGATAGGTTAAGGA+CGG - chr4_1:6105004-6105023 None:intergenic 40.0%
GAAGAAGGATGGATAGGTTA+AGG - chr4_1:6105008-6105027 None:intergenic 40.0%
TTCGCAAGAAAGAAGAAGGA+TGG - chr4_1:6105019-6105038 None:intergenic 40.0%
! TTGGTTCGCAAGAAAGAAGA+AGG - chr4_1:6105023-6105042 None:intergenic 40.0%
CCCAACAGAGTCTTCATTAA+TGG - chr4_1:6105051-6105070 None:intergenic 40.0%
GATGCCATGAAATGGAAACT+TGG + chr4_1:6105081-6105100 Msa0532070:intron 40.0%
CCAAAAATCTCCTTGACGAT+TGG - chr4_1:6105131-6105150 None:intergenic 40.0%
! CCAATCGTCAAGGAGATTTT+TGG + chr4_1:6105128-6105147 Msa0532070:intron 40.0%
!! ATCGTCAAGGAGATTTTTGG+GGG + chr4_1:6105131-6105150 Msa0532070:intron 40.0%
ACACAATCTAAGCAACAGTG+AGG + chr4_1:6105218-6105237 Msa0532070:intron 40.0%
! TCTAAGCAACAGTGAGGTTT+TGG + chr4_1:6105224-6105243 Msa0532070:intron 40.0%
! CTAAGCAACAGTGAGGTTTT+GGG + chr4_1:6105225-6105244 Msa0532070:intron 40.0%
AGTATCGTAAGAATGAACGG+CGG - chr4_1:6105333-6105352 None:intergenic 40.0%
!! TTGCTACAACTTTAGGATCG+CGG + chr4_1:6105468-6105487 Msa0532070:CDS 40.0%
! CTTTGTTTGTCTCCTACCTT+TGG - chr4_1:6105539-6105558 None:intergenic 40.0%
GATTGTGCATATAACTAGGG+TGG + chr4_1:6105607-6105626 Msa0532070:intron 40.0%
TGCATATAACTAGGGTGGTA+AGG + chr4_1:6105612-6105631 Msa0532070:intron 40.0%
GCATATAACTAGGGTGGTAA+GGG + chr4_1:6105613-6105632 Msa0532070:intron 40.0%
!! GTAAGGGCTAGTTACACTAA+TGG + chr4_1:6105629-6105648 Msa0532070:intron 40.0%
! TAATTTTGCAACCAGGTCTG+TGG - chr4_1:6105915-6105934 None:intergenic 40.0%
CAGACCTGGTTGCAAAATTA+CGG + chr4_1:6105915-6105934 Msa0532070:CDS 40.0%
AGACCTGGTTGCAAAATTAC+GGG + chr4_1:6105916-6105935 Msa0532070:CDS 40.0%
!! CTTTAGTTTGTGCAGCATAG+TGG - chr4_1:6105946-6105965 None:intergenic 40.0%
AATTGGCTATTGCCTATGTC+AGG + chr4_1:6105990-6106009 Msa0532070:intron 40.0%
GTAGCTTCATATCCTGACAT+AGG - chr4_1:6106005-6106024 None:intergenic 40.0%
CAGCTCATACAACAAAAGTC+AGG - chr4_1:6106248-6106267 None:intergenic 40.0%
!! TGCTTGCTATCTTTCCAGTA+CGG + chr4_1:6106353-6106372 Msa0532070:intron 40.0%
ACTAGAAACAACTTGGAAGC+TGG + chr4_1:6106399-6106418 Msa0532070:CDS 40.0%
GCTTGATCATATCGTCAATC+CGG - chr4_1:6106590-6106609 None:intergenic 40.0%
CGATATGATCAAGCTTGTCA+AGG + chr4_1:6106596-6106615 Msa0532070:CDS 40.0%
ATCAAGCTTGTCAAGGATGA+AGG + chr4_1:6106603-6106622 Msa0532070:CDS 40.0%
TGTTGGTATGGCATTTGAAG+AGG + chr4_1:6106705-6106724 Msa0532070:three_prime_UTR 40.0%
! TGTTCTTGTCATGCATTGAC+TGG + chr4_1:6106906-6106925 Msa0532070:three_prime_UTR 40.0%
!! CAGTTGGATTAGTTGTGGTT+TGG + chr4_1:6107123-6107142 Msa0532070:three_prime_UTR 40.0%
! TGGTGGACAAATACTTTGCT+TGG - chr4_1:6107183-6107202 None:intergenic 40.0%
GACTCTATAAAACGCCAGAG+AGG - chr4_1:6099199-6099218 None:intergenic 45.0%
! AGTATCGAAGGTTTGAACCC+TGG + chr4_1:6099454-6099473 Msa0532070:intron 45.0%
GGATTTGGGAAGTAAGTCCA+GGG - chr4_1:6099474-6099493 None:intergenic 45.0%
AGGATTTGGGAAGTAAGTCC+AGG - chr4_1:6099475-6099494 None:intergenic 45.0%
ACTACTTGAGCTACACCTTG+GGG + chr4_1:6099512-6099531 Msa0532070:intron 45.0%
!! TGTTCCCCGTCTTATTTCCT+GGG + chr4_1:6099617-6099636 Msa0532070:intron 45.0%
TGCTTCCCAGGAAATAAGAC+GGG - chr4_1:6099625-6099644 None:intergenic 45.0%
!! ATTTCCTGGGAAGCATTCAG+CGG + chr4_1:6099630-6099649 Msa0532070:intron 45.0%
! CACTTGTAGGTTGAGAAGCT+TGG + chr4_1:6099708-6099727 Msa0532070:intron 45.0%
!! TATCAGCTTTGAGGACATGC+TGG - chr4_1:6099763-6099782 None:intergenic 45.0%
ATGTCCTCAAAGCTGATAGC+TGG + chr4_1:6099765-6099784 Msa0532070:CDS 45.0%
CTTTCCTCTCAAGCAGAAAG+TGG - chr4_1:6100088-6100107 None:intergenic 45.0%
CACTTTCTGCTTGAGAGGAA+AGG + chr4_1:6100086-6100105 Msa0532070:intron 45.0%
ACGTGCCACAAAGCCAATTA+TGG - chr4_1:6100402-6100421 None:intergenic 45.0%
!! AATTGGCTTTGTGGCACGTT+AGG + chr4_1:6100403-6100422 Msa0532070:intron 45.0%
GATGGCAGTAGGTAGATCAA+AGG - chr4_1:6100616-6100635 None:intergenic 45.0%
ATGTGAAAGCAGTCGTACAC+AGG - chr4_1:6100663-6100682 None:intergenic 45.0%
AATCCCAGTGATGTCGATGT+AGG + chr4_1:6100731-6100750 Msa0532070:intron 45.0%
CATCCTACATCGACATCACT+GGG - chr4_1:6100737-6100756 None:intergenic 45.0%
TCATCCTACATCGACATCAC+TGG - chr4_1:6100738-6100757 None:intergenic 45.0%
! TTTGTTGTGGAGAGGGTCAT+TGG + chr4_1:6100875-6100894 Msa0532070:intron 45.0%
GTCAGATACCCAATCAAGGT+TGG + chr4_1:6101189-6101208 Msa0532070:intron 45.0%
CGTAAGCAAAATAGAGCTGC+AGG - chr4_1:6101306-6101325 None:intergenic 45.0%
!! TACCCTAAGAGGCATTCCTT+GGG - chr4_1:6101470-6101489 None:intergenic 45.0%
!! ATACCCTAAGAGGCATTCCT+TGG - chr4_1:6101471-6101490 None:intergenic 45.0%
! CGAATTTTCTCGAGTTCCCT+GGG - chr4_1:6101574-6101593 None:intergenic 45.0%
GTCATGGGTCATATTGATGG+GGG + chr4_1:6102558-6102577 Msa0532070:intron 45.0%
AGGTACGAAAAACGGTGCTT+GGG - chr4_1:6102855-6102874 None:intergenic 45.0%
! TTACCATACCCATTTGGCTC+AGG + chr4_1:6103161-6103180 Msa0532070:intron 45.0%
! TACCATACCCATTTGGCTCA+GGG + chr4_1:6103162-6103181 Msa0532070:intron 45.0%
TACAAACCCCTGAGCCAAAT+GGG - chr4_1:6103172-6103191 None:intergenic 45.0%
ATACAAACCCCTGAGCCAAA+TGG - chr4_1:6103173-6103192 None:intergenic 45.0%
! ATTTGCTGATATGGAAGGGG+AGG + chr4_1:6103272-6103291 Msa0532070:CDS 45.0%
AACTGCAGATGAGGTTGTTG+AGG + chr4_1:6103320-6103339 Msa0532070:CDS 45.0%
TCCAGCATCAATGCCAGTAT+GGG - chr4_1:6103694-6103713 None:intergenic 45.0%
TTCCAGCATCAATGCCAGTA+TGG - chr4_1:6103695-6103714 None:intergenic 45.0%
GTGTACTTTCCTCACTGTGA+TGG + chr4_1:6103843-6103862 Msa0532070:intron 45.0%
ATGTAGCTACCATCACAGTG+AGG - chr4_1:6103855-6103874 None:intergenic 45.0%
! AGGGTGCTAATAAAGCCTTG+TGG + chr4_1:6103944-6103963 Msa0532070:intron 45.0%
! AATAAAGCCTTGTGGAGTCC+CGG + chr4_1:6103952-6103971 Msa0532070:intron 45.0%
GGCTATGTTTGGATGTTGAG+AGG + chr4_1:6104415-6104434 Msa0532070:intron 45.0%
!! TCGTCAAGGAGATTTTTGGG+GGG + chr4_1:6105132-6105151 Msa0532070:intron 45.0%
!! AGGAGATTTTTGGGGGGATT+CGG + chr4_1:6105138-6105157 Msa0532070:intron 45.0%
GTATCGTAAGAATGAACGGC+GGG - chr4_1:6105332-6105351 None:intergenic 45.0%
! ATGTAAATTCAGGTGGTGGC+TGG + chr4_1:6105401-6105420 Msa0532070:intron 45.0%
GCGATCCTAAAGTTGTAGCA+AGG - chr4_1:6105469-6105488 None:intergenic 45.0%
!! TGCTACAACTTTAGGATCGC+GGG + chr4_1:6105469-6105488 Msa0532070:CDS 45.0%
!! TGCGCCTGTGTTGTTTGTTT+GGG + chr4_1:6106047-6106066 Msa0532070:intron 45.0%
!! TTGCTGTTCTAGTTTCGGCA+TGG + chr4_1:6106281-6106300 Msa0532070:intron 45.0%
!! TGCTGTTCTAGTTTCGGCAT+GGG + chr4_1:6106282-6106301 Msa0532070:intron 45.0%
!! GCTTGCTATCTTTCCAGTAC+GGG + chr4_1:6106354-6106373 Msa0532070:intron 45.0%
CTATCTTTCCAGTACGGGTT+TGG + chr4_1:6106359-6106378 Msa0532070:intron 45.0%
TGAAAGATCCAAACCCGTAC+TGG - chr4_1:6106370-6106389 None:intergenic 45.0%
ACGGGTTTGGATCTTTCAGA+AGG + chr4_1:6106372-6106391 Msa0532070:CDS 45.0%
! TGCTAGTTCTTGTGTAAGGG+AGG + chr4_1:6106668-6106687 Msa0532070:three_prime_UTR 45.0%
! GCTAGTTCTTGTGTAAGGGA+GGG + chr4_1:6106669-6106688 Msa0532070:three_prime_UTR 45.0%
GTTTCCAGGCTATGTTGGTA+TGG + chr4_1:6106693-6106712 Msa0532070:three_prime_UTR 45.0%
AATGCCATACCAACATAGCC+TGG - chr4_1:6106700-6106719 None:intergenic 45.0%
! ATTACCCTTGATGGTCTTGG+AGG + chr4_1:6106739-6106758 Msa0532070:three_prime_UTR 45.0%
! TTACCCTTGATGGTCTTGGA+GGG + chr4_1:6106740-6106759 Msa0532070:three_prime_UTR 45.0%
AACCAAACGCTGCCTTAGAA+AGG - chr4_1:6106948-6106967 None:intergenic 45.0%
!! TTTATAAAATTCAATAAATA+AGG + chr4_1:6102231-6102250 Msa0532070:intron 5.0%
!! TTATAAAATTCAATAAATAA+GGG + chr4_1:6102232-6102251 Msa0532070:intron 5.0%
!!! ATCAATTTTTATTTATTAAT+AGG - chr4_1:6104717-6104736 None:intergenic 5.0%
AGACGAAAAGCTTGCCGTCA+AGG + chr4_1:6099040-6099059 Msa0532070:CDS 50.0%
GGAAATAAGACGGGGAACAG+TGG - chr4_1:6099616-6099635 None:intergenic 50.0%
!! CTGTTCCCCGTCTTATTTCC+TGG + chr4_1:6099616-6099635 Msa0532070:intron 50.0%
GCTTCCCAGGAAATAAGACG+GGG - chr4_1:6099624-6099643 None:intergenic 50.0%
! CTTTGAGGACATGCTGGTCT+TGG - chr4_1:6099757-6099776 None:intergenic 50.0%
GTCACCAGCTATCAGCTTTG+AGG - chr4_1:6099772-6099791 None:intergenic 50.0%
AGGAGGATGCCTAAGGAGTA+AGG - chr4_1:6100643-6100662 None:intergenic 50.0%
TGAAAGCAGTCGTACACAGG+AGG - chr4_1:6100660-6100679 None:intergenic 50.0%
ACGAGGCTTTGCTTTGCTTC+TGG + chr4_1:6101238-6101257 Msa0532070:intron 50.0%
TGCCCAAGGAATGCCTCTTA+GGG + chr4_1:6101465-6101484 Msa0532070:CDS 50.0%
TTTGCAGGGGATACCCTAAG+AGG - chr4_1:6101481-6101500 None:intergenic 50.0%
! GCGAATTTTCTCGAGTTCCC+TGG - chr4_1:6101575-6101594 None:intergenic 50.0%
TTCGCCAAAGGTAGTCTGTC+TGG + chr4_1:6101590-6101609 Msa0532070:intron 50.0%
GAAGCCAGACAGACTACCTT+TGG - chr4_1:6101597-6101616 None:intergenic 50.0%
!!! CTCTACCCTTGTCGTTTTGC+AGG + chr4_1:6101816-6101835 Msa0532070:intron 50.0%
! CATGTCAGCCTCTCTGAAAG+AGG - chr4_1:6101889-6101908 None:intergenic 50.0%
CAGAGAGGCTGACATGACTA+AGG + chr4_1:6101893-6101912 Msa0532070:intron 50.0%
CAATTGCTGTGAGACGTGTG+CGG + chr4_1:6102704-6102723 Msa0532070:CDS 50.0%
CGTCATGTTGCCAAAGCAAC+CGG + chr4_1:6102739-6102758 Msa0532070:CDS 50.0%
AAGGCATACCAACGTTGCAC+CGG - chr4_1:6102761-6102780 None:intergenic 50.0%
GAGGTACGAAAAACGGTGCT+TGG - chr4_1:6102856-6102875 None:intergenic 50.0%
CAACTGCAGAAGAAAAGGGG+AGG - chr4_1:6102875-6102894 None:intergenic 50.0%
! ACCATACCCATTTGGCTCAG+GGG + chr4_1:6103163-6103182 Msa0532070:intron 50.0%
AGTAAGTGGTTTGAGAGCCG+AGG + chr4_1:6103398-6103417 Msa0532070:intron 50.0%
TGGTTTGAGAGCCGAGGATT+GGG + chr4_1:6103404-6103423 Msa0532070:intron 50.0%
!! TCCCATACTGGCATTGATGC+TGG + chr4_1:6103690-6103709 Msa0532070:intron 50.0%
ACTGAAGCTCCCACATATGC+AGG + chr4_1:6104664-6104683 Msa0532070:intron 50.0%
CTGAAGCTCCCACATATGCA+GGG + chr4_1:6104665-6104684 Msa0532070:intron 50.0%
CACTTCTGTGCGGAAAGGTT+GGG - chr4_1:6104882-6104901 None:intergenic 50.0%
CAACCTTTCCGCACAGAAGT+GGG + chr4_1:6104881-6104900 Msa0532070:intron 50.0%
TGTTTCCACCCACTTCTGTG+CGG - chr4_1:6104892-6104911 None:intergenic 50.0%
TTGGGGGGATTCGGAGATAT+TGG + chr4_1:6105147-6105166 Msa0532070:intron 50.0%
TGCGTTCTCACAGTCATGCT+TGG + chr4_1:6105375-6105394 Msa0532070:intron 50.0%
! TAAATTCAGGTGGTGGCTGG+TGG + chr4_1:6105404-6105423 Msa0532070:intron 50.0%
!! TGGCAACACTTTTCTGGTGC+AGG + chr4_1:6105862-6105881 Msa0532070:intron 50.0%
! AGGCCCGTAATTTTGCAACC+AGG - chr4_1:6105922-6105941 None:intergenic 50.0%
AGTTTGTGCAGCATAGTGGC+AGG - chr4_1:6105942-6105961 None:intergenic 50.0%
!! GTGCGCCTGTGTTGTTTGTT+TGG + chr4_1:6106046-6106065 Msa0532070:intron 50.0%
GCTTGTCAAGGATGAAGGTC+AGG + chr4_1:6106608-6106627 Msa0532070:CDS 50.0%
TCTCCCTCCAAGACCATCAA+GGG - chr4_1:6106746-6106765 None:intergenic 50.0%
TTCTCCCTCCAAGACCATCA+AGG - chr4_1:6106747-6106766 None:intergenic 50.0%
!! TGCCTTTCTAAGGCAGCGTT+TGG + chr4_1:6106943-6106962 Msa0532070:three_prime_UTR 50.0%
!! CTAAGGCAGCGTTTGGTTTG+TGG + chr4_1:6106950-6106969 Msa0532070:three_prime_UTR 50.0%
GAAACCGCTGAATGCTTCCC+AGG - chr4_1:6099637-6099656 None:intergenic 55.0%
CGTACACAGGAGGATGCCTA+AGG - chr4_1:6100650-6100669 None:intergenic 55.0%
GGTATCTGACTTCACCCCGT+TGG - chr4_1:6101179-6101198 None:intergenic 55.0%
AATACTGGACGTGCTGCCCA+AGG + chr4_1:6101451-6101470 Msa0532070:CDS 55.0%
CTGCCCAAGGAATGCCTCTT+AGG + chr4_1:6101464-6101483 Msa0532070:CDS 55.0%
!! GTGAGACGGAGGGAGTATCT+TGG + chr4_1:6102349-6102368 Msa0532070:intron 55.0%
!! CAACGTTGCACCGGTTGCTT+TGG - chr4_1:6102752-6102771 None:intergenic 55.0%
CAAAGCAACCGGTGCAACGT+TGG + chr4_1:6102750-6102769 Msa0532070:CDS 55.0%
ACCCCTGAGCCAAATGGGTA+TGG - chr4_1:6103167-6103186 None:intergenic 55.0%
GTGGTTTGAGAGCCGAGGAT+TGG + chr4_1:6103403-6103422 Msa0532070:intron 55.0%
GTGGGGATGCATTCCCATAC+TGG + chr4_1:6103678-6103697 Msa0532070:intron 55.0%
TTCTGATCCGGGACTCCACA+AGG - chr4_1:6103962-6103981 None:intergenic 55.0%
TTCCCGGACCCTGCATATGT+GGG - chr4_1:6104676-6104695 None:intergenic 55.0%
ACATATGCAGGGTCCGGGAA+GGG + chr4_1:6104676-6104695 Msa0532070:intron 55.0%
! AATATGGTGGGACCCCTTCC+CGG - chr4_1:6104692-6104711 None:intergenic 55.0%
CCACTTCTGTGCGGAAAGGT+TGG - chr4_1:6104883-6104902 None:intergenic 55.0%
CCAACCTTTCCGCACAGAAG+TGG + chr4_1:6104880-6104899 Msa0532070:intron 55.0%
GAACGGCGGGACTGATAAAC+AGG - chr4_1:6105319-6105338 None:intergenic 55.0%
! TTTAGGATCGCGGGAGCAGT+TGG + chr4_1:6105478-6105497 Msa0532070:CDS 55.0%
!! GCTTGCTGTCAATGCTGCCA+AGG + chr4_1:6105886-6105905 Msa0532070:CDS 55.0%
AACCAGGTCTGTGGCATCCT+TGG - chr4_1:6105906-6105925 None:intergenic 55.0%
! AGGGCGTTTCCAGGCTATGT+TGG + chr4_1:6106688-6106707 Msa0532070:three_prime_UTR 55.0%
TGTGGGAGCTTCAGTGCACC+AGG - chr4_1:6104659-6104678 None:intergenic 60.0%
GCTCCCACATATGCAGGGTC+CGG + chr4_1:6104670-6104689 Msa0532070:intron 60.0%
CTCCCACATATGCAGGGTCC+GGG + chr4_1:6104671-6104690 Msa0532070:intron 60.0%
CTTCCCGGACCCTGCATATG+TGG - chr4_1:6104677-6104696 None:intergenic 60.0%
CACATATGCAGGGTCCGGGA+AGG + chr4_1:6104675-6104694 Msa0532070:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_1:6104677-6104696 Msa0532070:intron 60.0%
CCACCCACTTCTGTGCGGAA+AGG - chr4_1:6104887-6104906 None:intergenic 60.0%
CCTTTCCGCACAGAAGTGGG+TGG + chr4_1:6104884-6104903 Msa0532070:intron 60.0%
! ATTCAGGTGGTGGCTGGTGG+AGG + chr4_1:6105407-6105426 Msa0532070:intron 60.0%
TGCCAAGGATGCCACAGACC+TGG + chr4_1:6105901-6105920 Msa0532070:CDS 60.0%
!! GTGTAAGGGAGGGCGTTTCC+AGG + chr4_1:6106679-6106698 Msa0532070:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6098796 6107225 6098796 ID=Msa0532070;Name=Msa0532070
chr4_1 mRNA 6098796 6107225 6098796 ID=Msa0532070-mRNA-1;Parent=Msa0532070;Name=Msa0532070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=99|1|1|1|0.92|0.85|14|557|417
chr4_1 exon 6098796 6098888 6098796 ID=Msa0532070-mRNA-1:exon:2139;Parent=Msa0532070-mRNA-1
chr4_1 exon 6099011 6099061 6099011 ID=Msa0532070-mRNA-1:exon:2140;Parent=Msa0532070-mRNA-1
chr4_1 exon 6099717 6099812 6099717 ID=Msa0532070-mRNA-1:exon:2141;Parent=Msa0532070-mRNA-1
chr4_1 exon 6101141 6101206 6101141 ID=Msa0532070-mRNA-1:exon:2142;Parent=Msa0532070-mRNA-1
chr4_1 exon 6101382 6101599 6101382 ID=Msa0532070-mRNA-1:exon:2143;Parent=Msa0532070-mRNA-1
chr4_1 exon 6101896 6101992 6101896 ID=Msa0532070-mRNA-1:exon:2144;Parent=Msa0532070-mRNA-1
chr4_1 exon 6102685 6102771 6102685 ID=Msa0532070-mRNA-1:exon:2145;Parent=Msa0532070-mRNA-1
chr4_1 exon 6103264 6103398 6103264 ID=Msa0532070-mRNA-1:exon:2146;Parent=Msa0532070-mRNA-1
chr4_1 exon 6104213 6104317 6104213 ID=Msa0532070-mRNA-1:exon:2147;Parent=Msa0532070-mRNA-1
chr4_1 exon 6105413 6105541 6105413 ID=Msa0532070-mRNA-1:exon:2148;Parent=Msa0532070-mRNA-1
chr4_1 exon 6105884 6105987 6105884 ID=Msa0532070-mRNA-1:exon:2149;Parent=Msa0532070-mRNA-1
chr4_1 exon 6106371 6106461 6106371 ID=Msa0532070-mRNA-1:exon:2150;Parent=Msa0532070-mRNA-1
chr4_1 exon 6106558 6106784 6106558 ID=Msa0532070-mRNA-1:exon:2151;Parent=Msa0532070-mRNA-1
chr4_1 exon 6106815 6107225 6106815 ID=Msa0532070-mRNA-1:exon:2152;Parent=Msa0532070-mRNA-1
chr4_1 five_prime_UTR 6098796 6098888 6098796 ID=Msa0532070-mRNA-1:five_prime_utr;Parent=Msa0532070-mRNA-1
chr4_1 five_prime_UTR 6099011 6099016 6099011 ID=Msa0532070-mRNA-1:five_prime_utr;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6099017 6099061 6099017 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6099717 6099812 6099717 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6101141 6101206 6101141 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6101382 6101599 6101382 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6101896 6101992 6101896 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6102685 6102771 6102685 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6103264 6103398 6103264 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6104213 6104317 6104213 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6105413 6105541 6105413 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6105884 6105987 6105884 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6106371 6106461 6106371 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 CDS 6106558 6106638 6106558 ID=Msa0532070-mRNA-1:cds;Parent=Msa0532070-mRNA-1
chr4_1 three_prime_UTR 6106639 6106784 6106639 ID=Msa0532070-mRNA-1:three_prime_utr;Parent=Msa0532070-mRNA-1
chr4_1 three_prime_UTR 6106815 6107225 6106815 ID=Msa0532070-mRNA-1:three_prime_utr;Parent=Msa0532070-mRNA-1
Gene Sequence

>Msa0532070

ATGCGAGAAGCTTGTAAATACGTAGACGAAAAGCTTGCCGTCAAGGTTGAGAAGCTTGGAAAAGATTCACTAATTAACTGTGCCAAGACCAGCATGTCCTCAAAGCTGATAGCTGGTGACAGTGATTTCTTTGCTAATTTGGTTGTAGAAGCGGTGCAAGCTGTAAAGATGACTAACCAACGGGGTGAAGTCAGATACCCAATCAAGGGAATCAATATATTGAAGGCACATGGTAAAAGTGCTAGAGACAGCTTTTTGATGAATGGTTATGCTCTTAATACTGGACGTGCTGCCCAAGGAATGCCTCTTAGGGTATCCCCTGCAAAAATTGCTTGTCTTGATTTCAATCTTCAGAAGACAAAAATGCAATTGGGTGTTCAAGTATTAGTTTCTGATCCCAGGGAACTCGAGAAAATTCGCCAAAGAGAGGCTGACATGACTAAGGAACGCATCGAGAAATTACTGAAAGCTGGAGCGAATGTTGTTCTGACTACTAAAGGAATTGATGACATGGCGCTTAAGTACTTTGTTGAGGCTGGTGCAATTGCTGTGAGACGTGTGCGGAAAGAAGATATGCGTCATGTTGCCAAAGCAACCGGTGCAACGTTGGTCTCAACATTTGCTGATATGGAAGGGGAGGAAACTTTTGAACCGTCATTTCTTGGAACTGCAGATGAGGTTGTTGAGGAGCGTATAGCTGACGATGCTGTAATCATGATTAAAGGGACCAAAACTTCAAGTGCAGTCTCGTTAATTCTCAGAGGTGCAAATGACTACATGCTTGATGAGATGGATAGAGCTCTGCATGATGCGCTATCAATTGTCAAGAGAACGCTTGAGTCAAATACAGTGGTGGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAATACCTTGCTACAACTTTAGGATCGCGGGAGCAGTTGGCTATAGCAGAGTTTGCCGAGTCTCTGTTAATCATTCCAAAGGTGCTTGCTGTCAATGCTGCCAAGGATGCCACAGACCTGGTTGCAAAATTACGGGCCTGCCACTATGCTGCACAAACTAAAGCAGATAAGAAGCATTTATCAAGTACGGGTTTGGATCTTTCAGAAGGAAAGACTAGAAACAACTTGGAAGCTGGAGTCATTGAGCCTGCAATGAGCAAAGTCAAAATTATTCAGTTTGCAACTGAAGCTGCTATTACTATTCTCCGGATTGACGATATGATCAAGCTTGTCAAGGATGAAGGTCAGGAAGAATAG

Protein sequence

>Msa0532070

MREACKYVDEKLAVKVEKLGKDSLINCAKTSMSSKLIAGDSDFFANLVVEAVQAVKMTNQRGEVRYPIKGINILKAHGKSARDSFLMNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQLGVQVLVSDPRELEKIRQREADMTKERIEKLLKAGANVVLTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHVAKATGATLVSTFADMEGEETFEPSFLGTADEVVEERIADDAVIMIKGTKTSSAVSLILRGANDYMLDEMDRALHDALSIVKRTLESNTVVAGGGAVEAALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATDLVAKLRACHYAAQTKADKKHLSSTGLDLSEGKTRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDEGQEE*