AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323070 MtrunA17_Chr8g0355811 96.154 156 6 0 1 156 1 156 5.34e-111 311
Msa1323070 MtrunA17_Chr8g0355821 88.312 154 18 0 1 154 1 154 1.12e-101 288
Msa1323070 MtrunA17_Chr8g0355801 87.179 156 20 0 1 156 1 156 5.56e-100 284
Msa1323070 MtrunA17_Chr8g0355791 83.333 156 26 0 1 156 1 156 5.53e-96 274
Msa1323070 MtrunA17_Chr8g0355771 82.692 156 27 0 1 156 1 156 1.05e-94 270
Msa1323070 MtrunA17_Chr8g0355741 78.981 157 32 1 1 156 1 157 1.17e-89 258
Msa1323070 MtrunA17_Chr8g0355721 75.159 157 37 2 1 156 1 156 7.47e-86 248
Msa1323070 MtrunA17_Chr8g0355661 73.248 157 40 2 1 156 1 156 2.75e-83 241
Msa1323070 MtrunA17_Chr8g0355781 71.711 152 42 1 1 151 1 152 7.44e-81 235
Msa1323070 MtrunA17_Chr8g0355761 71.053 152 43 1 1 151 1 152 5.59e-80 233
Msa1323070 MtrunA17_Chr8g0355641 67.949 156 49 1 1 155 1 156 5.19e-79 231
Msa1323070 MtrunA17_Chr1g0160371 43.137 153 83 3 1 150 1 152 1.21e-39 131
Msa1323070 MtrunA17_Chr1g0160381 38.562 153 90 3 1 150 5 156 9.91e-38 126
Msa1323070 MtrunA17_Chr1g0160391 38.462 156 87 5 1 148 1 155 4.93e-29 104
Msa1323070 MtrunA17_Chr8g0339261 34.000 150 95 4 6 153 8 155 1.82e-26 97.8
Msa1323070 MtrunA17_Chr1g0160801 38.514 148 81 6 7 151 7 147 1.47e-22 87.4
Msa1323070 MtrunA17_Chr1g0160351 40.860 93 52 2 61 150 1 93 9.66e-21 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323070 AT5G28010.1 35.948 153 94 4 3 152 15 166 1.31e-25 96.3
Msa1323070 AT5G28010.2 35.948 153 94 4 3 152 15 166 1.31e-25 96.3
Msa1323070 AT1G70840.1 35.294 153 95 4 3 152 20 171 1.01e-24 94.0
Msa1323070 AT1G70830.5 36.601 153 93 4 3 152 22 173 2.70e-24 92.8
Msa1323070 AT1G70830.3 36.364 154 94 4 3 153 22 174 3.95e-24 93.2
Msa1323070 AT1G70890.1 35.948 153 94 4 3 152 7 158 6.27e-24 91.7
Msa1323070 AT1G70830.2 36.364 154 94 4 3 153 22 174 1.76e-23 92.8
Msa1323070 AT1G70830.1 36.364 154 94 4 3 153 22 174 4.49e-23 93.2
Msa1323070 AT1G70830.1 35.294 153 95 4 3 152 184 335 1.57e-21 89.0
Msa1323070 AT5G28000.1 32.680 153 99 4 3 152 13 164 2.91e-22 87.4
Msa1323070 AT1G70830.4 35.294 153 95 4 3 152 137 288 5.46e-22 89.7
Msa1323070 AT1G70830.4 32.990 97 63 2 59 153 31 127 3.65e-11 60.1
Msa1323070 AT1G70850.2 34.667 150 94 4 3 149 9 157 1.07e-21 87.8
Msa1323070 AT1G70850.3 34.667 150 94 4 3 149 9 157 2.41e-21 88.2
Msa1323070 AT1G70850.3 35.664 143 88 4 13 152 175 316 7.56e-21 87.0
Msa1323070 AT1G70850.1 34.667 150 94 4 3 149 9 157 2.41e-21 88.2
Msa1323070 AT1G70850.1 35.664 143 88 4 13 152 175 316 7.56e-21 87.0
Msa1323070 AT4G23670.1 32.680 153 99 4 1 151 1 151 2.05e-20 82.4
Msa1323070 AT1G14930.1 29.299 157 107 4 1 155 1 155 2.71e-19 79.7
Msa1323070 AT1G70870.1 34.839 155 79 5 1 150 1 138 7.20e-19 78.2
Msa1323070 AT2G01520.1 29.412 153 104 4 1 151 1 151 1.10e-18 77.8
Msa1323070 AT2G01530.1 30.719 153 102 4 1 151 1 151 9.75e-18 75.5
Msa1323070 AT1G70880.1 29.412 153 104 4 3 152 8 159 3.98e-17 73.9
Msa1323070 AT1G14940.1 28.662 157 108 4 1 155 1 155 6.07e-17 73.6
Msa1323070 AT1G35260.1 30.612 147 91 5 9 149 8 149 2.31e-16 72.0
Msa1323070 AT4G14060.1 28.758 153 105 4 1 151 1 151 2.36e-16 72.0
Msa1323070 AT4G23680.1 28.947 152 104 4 1 150 1 150 3.02e-16 71.6
Msa1323070 AT1G23130.1 28.188 149 104 3 3 149 10 157 4.83e-16 71.2
Msa1323070 AT1G24020.1 30.968 155 98 4 1 150 1 151 5.04e-16 71.2
Msa1323070 AT1G24020.2 30.968 155 98 4 1 150 1 151 5.04e-16 71.2
Msa1323070 AT1G14950.1 28.025 157 109 4 1 155 1 155 8.12e-16 70.5
Msa1323070 AT1G23120.1 28.667 150 99 5 3 149 1 145 1.76e-15 69.3
Msa1323070 AT1G23120.2 27.660 141 96 4 10 149 60 195 4.62e-15 69.7
Msa1323070 AT1G30990.1 27.815 151 104 5 1 149 1 148 1.56e-13 64.3
Msa1323070 AT1G14960.1 26.452 155 110 4 1 153 1 153 8.70e-13 62.4
Msa1323070 AT1G35310.1 27.338 139 97 4 13 149 12 148 1.61e-12 62.0
Msa1323070 AT3G26460.1 26.797 153 109 3 1 151 1 152 2.27e-12 61.6
Msa1323070 AT3G26450.1 24.675 154 111 5 1 151 1 152 4.26e-11 58.2

Find 44 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAAAGATATTTGAATTA+TGG 0.240516 8_4:+30933809 Msa1323070:three_prime_UTR
ATAAGGGATGGTTTATGATA+TGG 0.251417 8_4:-30932287 None:intergenic
AAAGATGAAAGAAACAAATA+AGG 0.269937 8_4:-30932304 None:intergenic
AAAATCACATACAAGCTATT+TGG 0.273919 8_4:+30933580 Msa1323070:CDS
TTATGTGTGATGCAAATAAA+TGG 0.319133 8_4:+30933999 Msa1323070:three_prime_UTR
AATTATGGTTCAATGGGGTT+TGG 0.343641 8_4:+30933824 Msa1323070:three_prime_UTR
CTAGTGTGATGTTTGTATTT+TGG 0.350117 8_4:+30933886 Msa1323070:three_prime_UTR
TGGAGATATTGAAAACTATA+AGG 0.391039 8_4:+30933603 Msa1323070:CDS
TATTTGAATTATGGTTCAAT+GGG 0.403324 8_4:+30933818 Msa1323070:three_prime_UTR
ATGGAAATTCTGCTGTTAGA+TGG 0.411619 8_4:+30933662 Msa1323070:CDS
TAAGGGATGGTTTATGATAT+GGG 0.413804 8_4:-30932286 None:intergenic
GGTAAACTTATTACTGAACT+TGG 0.415223 8_4:+30932370 Msa1323070:CDS
ATATTTGAATTATGGTTCAA+TGG 0.435694 8_4:+30933817 Msa1323070:three_prime_UTR
TGATGCAAATAAATGGATAT+TGG 0.446070 8_4:+30934006 Msa1323070:three_prime_UTR
AGGTAGTCCATCCAGCCATT+TGG 0.456227 8_4:-30933724 None:intergenic
AAACACTGGACTTATGTCAT+AGG 0.470664 8_4:+30932523 Msa1323070:CDS
AAGATGAAAGAAACAAATAA+GGG 0.486411 8_4:-30932303 None:intergenic
AGCTTCATGAGGGTGAAGAT+TGG 0.493681 8_4:+30932482 Msa1323070:CDS
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8_4:+30933774 Msa1323070:CDS
AGATTGGCATCATACTGATT+CGG 0.504369 8_4:+30932498 Msa1323070:CDS
AAGAGCACTAGAGATATTGA+TGG 0.505384 8_4:+30933751 Msa1323070:CDS
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8_4:+30933767 Msa1323070:CDS
ATCTTCACCCTCATGAAGCT+TGG 0.519812 8_4:-30932479 None:intergenic
ATCACATACAAGCTATTTGG+TGG 0.530005 8_4:+30933583 Msa1323070:CDS
GTAAACTTATTACTGAACTT+GGG 0.542207 8_4:+30932371 Msa1323070:CDS
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8_4:+30933766 Msa1323070:CDS
AGTTTGTAGAACTTGTCAGC+TGG 0.569465 8_4:-30932403 None:intergenic
TATCTCTAGTGCTCTTGCTA+AGG 0.569595 8_4:-30933744 None:intergenic
GAAGTGCTTAACAAGGCTGA+TGG 0.573383 8_4:+30933643 Msa1323070:CDS
ATGTTGATACTCCAAATGGC+TGG 0.578150 8_4:+30933713 Msa1323070:CDS
TGATACTCCAAATGGCTGGA+TGG 0.587093 8_4:+30933717 Msa1323070:CDS
GAGGATGTTGATACTCCAAA+TGG 0.593330 8_4:+30933709 Msa1323070:CDS
TGAAAGAAACAAATAAGGGA+TGG 0.593617 8_4:-30932299 None:intergenic
AAGGGATGGTTTATGATATG+GGG 0.600134 8_4:-30932285 None:intergenic
TTTGTATCGAATATATGTGT+CGG 0.605896 8_4:+30933950 Msa1323070:three_prime_UTR
ATACTGATTCGGTTAAACAC+TGG 0.606046 8_4:+30932509 Msa1323070:CDS
TCATCATACCAAGCTTCATG+AGG 0.610699 8_4:+30932471 Msa1323070:CDS
ATTTGAATTATGGTTCAATG+GGG 0.632915 8_4:+30933819 Msa1323070:three_prime_UTR
CATCATACCAAGCTTCATGA+GGG 0.642119 8_4:+30932472 Msa1323070:CDS
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8_4:+30933636 Msa1323070:CDS
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8_4:+30933768 Msa1323070:CDS
TGACATAACAACAGATGGCG+AGG 0.663434 8_4:+30933510 Msa1323070:intron
TGATTATGAGAAGAACAATG+AGG 0.694185 8_4:+30933690 Msa1323070:CDS
ACATATATTCGATACAAACG+AGG 0.746442 8_4:-30933945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTACTAAAAACTTTA+AGG - chr8_4:30933185-30933204 None:intergenic 10.0%
!! AAATTTACTATAAAATAGTA+AGG + chr8_4:30933280-30933299 Msa1323070:intron 10.0%
!! TTATCTTATTATAATATTTC+TGG + chr8_4:30933418-30933437 Msa1323070:intron 10.0%
!!! TTATTTTACTAAAAACTTTA+AGG - chr8_4:30933185-30933204 None:intergenic 10.0%
!! AAATTTACTATAAAATAGTA+AGG + chr8_4:30933280-30933299 Msa1323070:intron 10.0%
!! TTATCTTATTATAATATTTC+TGG + chr8_4:30933418-30933437 Msa1323070:intron 10.0%
!! TATAGTAATAAAAAGAAGAT+TGG + chr8_4:30932633-30932652 Msa1323070:intron 15.0%
!! AAATTCTAAATTAAGTCAAT+AGG - chr8_4:30932747-30932766 None:intergenic 15.0%
!! AGATAATCTATATAAAAAGT+AGG + chr8_4:30933118-30933137 Msa1323070:intron 15.0%
!! GATAATCTATATAAAAAGTA+GGG + chr8_4:30933119-30933138 Msa1323070:intron 15.0%
!!! AAAGCTTATTTTATTCTTTT+TGG + chr8_4:30933474-30933493 Msa1323070:intron 15.0%
!! TCATAAAGATATTTGAATTA+TGG + chr8_4:30933809-30933828 Msa1323070:three_prime_UTR 15.0%
!! TATAGTAATAAAAAGAAGAT+TGG + chr8_4:30932633-30932652 Msa1323070:intron 15.0%
!! AAATTCTAAATTAAGTCAAT+AGG - chr8_4:30932747-30932766 None:intergenic 15.0%
!! AGATAATCTATATAAAAAGT+AGG + chr8_4:30933118-30933137 Msa1323070:intron 15.0%
!! GATAATCTATATAAAAAGTA+GGG + chr8_4:30933119-30933138 Msa1323070:intron 15.0%
!!! AAAGCTTATTTTATTCTTTT+TGG + chr8_4:30933474-30933493 Msa1323070:intron 15.0%
!! TCATAAAGATATTTGAATTA+TGG + chr8_4:30933809-30933828 Msa1323070:three_prime_UTR 15.0%
!! AAGATGAAAGAAACAAATAA+GGG - chr8_4:30932306-30932325 None:intergenic 20.0%
!! AAAGATGAAAGAAACAAATA+AGG - chr8_4:30932307-30932326 None:intergenic 20.0%
!! ATTTAGTATCTATCCAAAAA+TGG + chr8_4:30932339-30932358 Msa1323070:exon 20.0%
!! CATCATATAAGATCTTTAAA+AGG + chr8_4:30933321-30933340 Msa1323070:intron 20.0%
!!! GAATAAAATAAGCTTTTCAA+AGG - chr8_4:30933470-30933489 None:intergenic 20.0%
!! ATATTTGAATTATGGTTCAA+TGG + chr8_4:30933817-30933836 Msa1323070:three_prime_UTR 20.0%
!! TATTTGAATTATGGTTCAAT+GGG + chr8_4:30933818-30933837 Msa1323070:three_prime_UTR 20.0%
!!! AGTTTAGTTTAACAAATCTT+AGG + chr8_4:30934075-30934094 Msa1323070:three_prime_UTR 20.0%
!!! GTTTAGTTTAACAAATCTTA+GGG + chr8_4:30934076-30934095 Msa1323070:three_prime_UTR 20.0%
!! AAGATGAAAGAAACAAATAA+GGG - chr8_4:30932306-30932325 None:intergenic 20.0%
!! AAAGATGAAAGAAACAAATA+AGG - chr8_4:30932307-30932326 None:intergenic 20.0%
!! ATTTAGTATCTATCCAAAAA+TGG + chr8_4:30932339-30932358 Msa1323070:exon 20.0%
!! CATCATATAAGATCTTTAAA+AGG + chr8_4:30933321-30933340 Msa1323070:intron 20.0%
!!! GAATAAAATAAGCTTTTCAA+AGG - chr8_4:30933470-30933489 None:intergenic 20.0%
!! ATATTTGAATTATGGTTCAA+TGG + chr8_4:30933817-30933836 Msa1323070:three_prime_UTR 20.0%
!! TATTTGAATTATGGTTCAAT+GGG + chr8_4:30933818-30933837 Msa1323070:three_prime_UTR 20.0%
! GTAAACTTATTACTGAACTT+GGG + chr8_4:30932371-30932390 Msa1323070:CDS 25.0%
! TATCAAACAAGATGATGATT+TGG - chr8_4:30932575-30932594 None:intergenic 25.0%
! AGTAATAAAAAGAAGATTGG+TGG + chr8_4:30932636-30932655 Msa1323070:intron 25.0%
! GTAATAAAAAGAAGATTGGT+GGG + chr8_4:30932637-30932656 Msa1323070:intron 25.0%
! TCTTCGTTATAGAATTCATT+TGG - chr8_4:30932673-30932692 None:intergenic 25.0%
! AAAAAATTATACTCGTACCA+TGG - chr8_4:30933059-30933078 None:intergenic 25.0%
! TTATCTCTAGACAAAAAATC+TGG - chr8_4:30933104-30933123 None:intergenic 25.0%
!!! ATCTTTAAAAGGTGTTTTAG+AGG + chr8_4:30933332-30933351 Msa1323070:intron 25.0%
! AAAATCACATACAAGCTATT+TGG + chr8_4:30933580-30933599 Msa1323070:CDS 25.0%
! TGGAGATATTGAAAACTATA+AGG + chr8_4:30933603-30933622 Msa1323070:CDS 25.0%
! ATTTGAATTATGGTTCAATG+GGG + chr8_4:30933819-30933838 Msa1323070:three_prime_UTR 25.0%
! TTTGTATCGAATATATGTGT+CGG + chr8_4:30933950-30933969 Msa1323070:three_prime_UTR 25.0%
! TTATGTGTGATGCAAATAAA+TGG + chr8_4:30933999-30934018 Msa1323070:three_prime_UTR 25.0%
! TGATGCAAATAAATGGATAT+TGG + chr8_4:30934006-30934025 Msa1323070:three_prime_UTR 25.0%
! GTAAACTTATTACTGAACTT+GGG + chr8_4:30932371-30932390 Msa1323070:CDS 25.0%
! TATCAAACAAGATGATGATT+TGG - chr8_4:30932575-30932594 None:intergenic 25.0%
! AGTAATAAAAAGAAGATTGG+TGG + chr8_4:30932636-30932655 Msa1323070:intron 25.0%
! GTAATAAAAAGAAGATTGGT+GGG + chr8_4:30932637-30932656 Msa1323070:intron 25.0%
! TCTTCGTTATAGAATTCATT+TGG - chr8_4:30932673-30932692 None:intergenic 25.0%
! AAAAAATTATACTCGTACCA+TGG - chr8_4:30933059-30933078 None:intergenic 25.0%
! TTATCTCTAGACAAAAAATC+TGG - chr8_4:30933104-30933123 None:intergenic 25.0%
!!! ATCTTTAAAAGGTGTTTTAG+AGG + chr8_4:30933332-30933351 Msa1323070:intron 25.0%
! AAAATCACATACAAGCTATT+TGG + chr8_4:30933580-30933599 Msa1323070:CDS 25.0%
! TGGAGATATTGAAAACTATA+AGG + chr8_4:30933603-30933622 Msa1323070:CDS 25.0%
! ATTTGAATTATGGTTCAATG+GGG + chr8_4:30933819-30933838 Msa1323070:three_prime_UTR 25.0%
! TTTGTATCGAATATATGTGT+CGG + chr8_4:30933950-30933969 Msa1323070:three_prime_UTR 25.0%
! TTATGTGTGATGCAAATAAA+TGG + chr8_4:30933999-30934018 Msa1323070:three_prime_UTR 25.0%
! TGATGCAAATAAATGGATAT+TGG + chr8_4:30934006-30934025 Msa1323070:three_prime_UTR 25.0%
TAAGGGATGGTTTATGATAT+GGG - chr8_4:30932289-30932308 None:intergenic 30.0%
ATAAGGGATGGTTTATGATA+TGG - chr8_4:30932290-30932309 None:intergenic 30.0%
TGAAAGAAACAAATAAGGGA+TGG - chr8_4:30932302-30932321 None:intergenic 30.0%
GGTAAACTTATTACTGAACT+TGG + chr8_4:30932370-30932389 Msa1323070:CDS 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8_4:30933690-30933709 Msa1323070:CDS 30.0%
! CTAGTGTGATGTTTGTATTT+TGG + chr8_4:30933886-30933905 Msa1323070:three_prime_UTR 30.0%
ACATATATTCGATACAAACG+AGG - chr8_4:30933948-30933967 None:intergenic 30.0%
TAAGGGATGGTTTATGATAT+GGG - chr8_4:30932289-30932308 None:intergenic 30.0%
ATAAGGGATGGTTTATGATA+TGG - chr8_4:30932290-30932309 None:intergenic 30.0%
TGAAAGAAACAAATAAGGGA+TGG - chr8_4:30932302-30932321 None:intergenic 30.0%
GGTAAACTTATTACTGAACT+TGG + chr8_4:30932370-30932389 Msa1323070:CDS 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8_4:30933690-30933709 Msa1323070:CDS 30.0%
! CTAGTGTGATGTTTGTATTT+TGG + chr8_4:30933886-30933905 Msa1323070:three_prime_UTR 30.0%
ACATATATTCGATACAAACG+AGG - chr8_4:30933948-30933967 None:intergenic 30.0%
AAGGGATGGTTTATGATATG+GGG - chr8_4:30932288-30932307 None:intergenic 35.0%
! AGATTGGCATCATACTGATT+CGG + chr8_4:30932498-30932517 Msa1323070:CDS 35.0%
!! ATACTGATTCGGTTAAACAC+TGG + chr8_4:30932509-30932528 Msa1323070:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_4:30932523-30932542 Msa1323070:CDS 35.0%
TATCGAAATCATTGTACACG+AGG + chr8_4:30932851-30932870 Msa1323070:intron 35.0%
AAAGCAACAAATGACCCTAA+AGG + chr8_4:30933001-30933020 Msa1323070:intron 35.0%
AGTAGCATCTCTTTCCTTTA+GGG - chr8_4:30933018-30933037 None:intergenic 35.0%
GCTTGTATGATATGATCCTT+CGG + chr8_4:30933141-30933160 Msa1323070:intron 35.0%
ATCACATACAAGCTATTTGG+TGG + chr8_4:30933583-30933602 Msa1323070:CDS 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG + chr8_4:30933636-30933655 Msa1323070:CDS 35.0%
ATGGAAATTCTGCTGTTAGA+TGG + chr8_4:30933662-30933681 Msa1323070:CDS 35.0%
!! AAGAGCACTAGAGATATTGA+TGG + chr8_4:30933751-30933770 Msa1323070:CDS 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8_4:30933766-30933785 Msa1323070:CDS 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8_4:30933767-30933786 Msa1323070:CDS 35.0%
AATTATGGTTCAATGGGGTT+TGG + chr8_4:30933824-30933843 Msa1323070:three_prime_UTR 35.0%
AAGGGATGGTTTATGATATG+GGG - chr8_4:30932288-30932307 None:intergenic 35.0%
! AGATTGGCATCATACTGATT+CGG + chr8_4:30932498-30932517 Msa1323070:CDS 35.0%
!! ATACTGATTCGGTTAAACAC+TGG + chr8_4:30932509-30932528 Msa1323070:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_4:30932523-30932542 Msa1323070:CDS 35.0%
TATCGAAATCATTGTACACG+AGG + chr8_4:30932851-30932870 Msa1323070:intron 35.0%
AAAGCAACAAATGACCCTAA+AGG + chr8_4:30933001-30933020 Msa1323070:intron 35.0%
AGTAGCATCTCTTTCCTTTA+GGG - chr8_4:30933018-30933037 None:intergenic 35.0%
GCTTGTATGATATGATCCTT+CGG + chr8_4:30933141-30933160 Msa1323070:intron 35.0%
ATCACATACAAGCTATTTGG+TGG + chr8_4:30933583-30933602 Msa1323070:CDS 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG + chr8_4:30933636-30933655 Msa1323070:CDS 35.0%
ATGGAAATTCTGCTGTTAGA+TGG + chr8_4:30933662-30933681 Msa1323070:CDS 35.0%
!! AAGAGCACTAGAGATATTGA+TGG + chr8_4:30933751-30933770 Msa1323070:CDS 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8_4:30933766-30933785 Msa1323070:CDS 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8_4:30933767-30933786 Msa1323070:CDS 35.0%
AATTATGGTTCAATGGGGTT+TGG + chr8_4:30933824-30933843 Msa1323070:three_prime_UTR 35.0%
TATCCAAAAATGGTGCTTGC+TGG + chr8_4:30932349-30932368 Msa1323070:exon 40.0%
! TTACCAGCAAGCACCATTTT+TGG - chr8_4:30932355-30932374 None:intergenic 40.0%
AGTTTGTAGAACTTGTCAGC+TGG - chr8_4:30932406-30932425 None:intergenic 40.0%
TCATCATACCAAGCTTCATG+AGG + chr8_4:30932471-30932490 Msa1323070:CDS 40.0%
CATCATACCAAGCTTCATGA+GGG + chr8_4:30932472-30932491 Msa1323070:CDS 40.0%
TGAGACTGATCTAACAACGA+AGG + chr8_4:30932710-30932729 Msa1323070:intron 40.0%
GAGTAGCATCTCTTTCCTTT+AGG - chr8_4:30933019-30933038 None:intergenic 40.0%
AACCACCTTTGTATTCACCA+TGG + chr8_4:30933039-30933058 Msa1323070:intron 40.0%
TACCATGGTGAATACAAAGG+TGG - chr8_4:30933044-30933063 None:intergenic 40.0%
TCGTACCATGGTGAATACAA+AGG - chr8_4:30933047-30933066 None:intergenic 40.0%
! CGTCTTTAGACATTTTCCGA+AGG - chr8_4:30933160-30933179 None:intergenic 40.0%
GAGGATGTTGATACTCCAAA+TGG + chr8_4:30933709-30933728 Msa1323070:CDS 40.0%
ATGTTGATACTCCAAATGGC+TGG + chr8_4:30933713-30933732 Msa1323070:CDS 40.0%
TATCTCTAGTGCTCTTGCTA+AGG - chr8_4:30933747-30933766 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8_4:30933768-30933787 Msa1323070:CDS 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8_4:30933774-30933793 Msa1323070:CDS 40.0%
!!! TCAATGGGGTTTGGCTTTTA+TGG + chr8_4:30933833-30933852 Msa1323070:three_prime_UTR 40.0%
TATCCAAAAATGGTGCTTGC+TGG + chr8_4:30932349-30932368 Msa1323070:exon 40.0%
! TTACCAGCAAGCACCATTTT+TGG - chr8_4:30932355-30932374 None:intergenic 40.0%
AGTTTGTAGAACTTGTCAGC+TGG - chr8_4:30932406-30932425 None:intergenic 40.0%
TCATCATACCAAGCTTCATG+AGG + chr8_4:30932471-30932490 Msa1323070:CDS 40.0%
CATCATACCAAGCTTCATGA+GGG + chr8_4:30932472-30932491 Msa1323070:CDS 40.0%
TGAGACTGATCTAACAACGA+AGG + chr8_4:30932710-30932729 Msa1323070:intron 40.0%
GAGTAGCATCTCTTTCCTTT+AGG - chr8_4:30933019-30933038 None:intergenic 40.0%
AACCACCTTTGTATTCACCA+TGG + chr8_4:30933039-30933058 Msa1323070:intron 40.0%
TACCATGGTGAATACAAAGG+TGG - chr8_4:30933044-30933063 None:intergenic 40.0%
TCGTACCATGGTGAATACAA+AGG - chr8_4:30933047-30933066 None:intergenic 40.0%
! CGTCTTTAGACATTTTCCGA+AGG - chr8_4:30933160-30933179 None:intergenic 40.0%
GAGGATGTTGATACTCCAAA+TGG + chr8_4:30933709-30933728 Msa1323070:CDS 40.0%
ATGTTGATACTCCAAATGGC+TGG + chr8_4:30933713-30933732 Msa1323070:CDS 40.0%
TATCTCTAGTGCTCTTGCTA+AGG - chr8_4:30933747-30933766 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8_4:30933768-30933787 Msa1323070:CDS 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8_4:30933774-30933793 Msa1323070:CDS 40.0%
!!! TCAATGGGGTTTGGCTTTTA+TGG + chr8_4:30933833-30933852 Msa1323070:three_prime_UTR 40.0%
ATCTTCACCCTCATGAAGCT+TGG - chr8_4:30932482-30932501 None:intergenic 45.0%
AGCTTCATGAGGGTGAAGAT+TGG + chr8_4:30932482-30932501 Msa1323070:CDS 45.0%
TTGTACACGAGGTGAAGTAC+TGG + chr8_4:30932862-30932881 Msa1323070:intron 45.0%
GCCTCTGACATAACAACAGA+TGG + chr8_4:30933505-30933524 Msa1323070:intron 45.0%
GCCATCTGTTGTTATGTCAG+AGG - chr8_4:30933509-30933528 None:intergenic 45.0%
TGACATAACAACAGATGGCG+AGG + chr8_4:30933510-30933529 Msa1323070:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG + chr8_4:30933643-30933662 Msa1323070:CDS 45.0%
TGATACTCCAAATGGCTGGA+TGG + chr8_4:30933717-30933736 Msa1323070:CDS 45.0%
ATCTTCACCCTCATGAAGCT+TGG - chr8_4:30932482-30932501 None:intergenic 45.0%
AGCTTCATGAGGGTGAAGAT+TGG + chr8_4:30932482-30932501 Msa1323070:CDS 45.0%
TTGTACACGAGGTGAAGTAC+TGG + chr8_4:30932862-30932881 Msa1323070:intron 45.0%
GCCTCTGACATAACAACAGA+TGG + chr8_4:30933505-30933524 Msa1323070:intron 45.0%
GCCATCTGTTGTTATGTCAG+AGG - chr8_4:30933509-30933528 None:intergenic 45.0%
TGACATAACAACAGATGGCG+AGG + chr8_4:30933510-30933529 Msa1323070:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG + chr8_4:30933643-30933662 Msa1323070:CDS 45.0%
TGATACTCCAAATGGCTGGA+TGG + chr8_4:30933717-30933736 Msa1323070:CDS 45.0%
!!! TAATTTAGAATTTTTTTAAT+TGG + chr8_4:30932754-30932773 Msa1323070:intron 5.0%
!! AATTAATAAAAAAAAAGTAA+CGG - chr8_4:30932916-30932935 None:intergenic 5.0%
!! AAATAATATATATTATGAAT+GGG - chr8_4:30932956-30932975 None:intergenic 5.0%
!! TAAATAATATATATTATGAA+TGG - chr8_4:30932957-30932976 None:intergenic 5.0%
!! AATATATATTATTTAGAAAA+AGG + chr8_4:30932962-30932981 Msa1323070:intron 5.0%
!!! TAATTTAGAATTTTTTTAAT+TGG + chr8_4:30932754-30932773 Msa1323070:intron 5.0%
!! AATTAATAAAAAAAAAGTAA+CGG - chr8_4:30932916-30932935 None:intergenic 5.0%
!! AAATAATATATATTATGAAT+GGG - chr8_4:30932956-30932975 None:intergenic 5.0%
!! TAAATAATATATATTATGAA+TGG - chr8_4:30932957-30932976 None:intergenic 5.0%
!! AATATATATTATTTAGAAAA+AGG + chr8_4:30932962-30932981 Msa1323070:intron 5.0%
AGGTAGTCCATCCAGCCATT+TGG - chr8_4:30933727-30933746 None:intergenic 50.0%
AGGTAGTCCATCCAGCCATT+TGG - chr8_4:30933727-30933746 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 30932268 30934095 30932268 ID=Msa1323070;Name=Msa1323070
chr8_4 mRNA 30932268 30934095 30932268 ID=Msa1323070-mRNA-1;Parent=Msa1323070;Name=Msa1323070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=90|1|1|1|1|1|2|288|156
chr8_4 exon 30932268 30932544 30932268 ID=Msa1323070-mRNA-1:exon:10165;Parent=Msa1323070-mRNA-1
chr8_4 exon 30933524 30934095 30933524 ID=Msa1323070-mRNA-1:exon:10166;Parent=Msa1323070-mRNA-1
chr8_4 five_prime_UTR 30932268 30932357 30932268 ID=Msa1323070-mRNA-1:five_prime_utr;Parent=Msa1323070-mRNA-1
chr8_4 CDS 30932358 30932544 30932358 ID=Msa1323070-mRNA-1:cds;Parent=Msa1323070-mRNA-1
chr8_4 CDS 30933524 30933807 30933524 ID=Msa1323070-mRNA-1:cds;Parent=Msa1323070-mRNA-1
chr8_4 three_prime_UTR 30933808 30934095 30933808 ID=Msa1323070-mRNA-1:three_prime_utr;Parent=Msa1323070-mRNA-1
Gene Sequence

>Msa1323070

ATGGTGCTTGCTGGTAAACTTATTACTGAACTTGGGATCAAAACACCAGCTGACAAGTTCTACAAACTATTTGCATCAGAACTTCATGAAGTGCAAAATGTTTGTGAAAGAGTTCATCATACCAAGCTTCATGAGGGTGAAGATTGGCATCATACTGATTCGGTTAAACACTGGACTTATGTCATAGATGGCGAGGTACACACATGCAATGAGAGTGTTGAAGAAGTTGATGATCAGAACAAAAAAATCACATACAAGCTATTTGGTGGAGATATTGAAAACTATAAGGTATTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAATTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATGTTGATACTCCAAATGGCTGGATGGACTACCTTAGCAAGAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>Msa1323070

MVLAGKLITELGIKTPADKFYKLFASELHEVQNVCERVHHTKLHEGEDWHHTDSVKHWTYVIDGEVHTCNESVEEVDDQNKKITYKLFGGDIENYKVFKLILEVLNKADGNSAVRWTIDYEKNNEDVDTPNGWMDYLSKSTRDIDGHLVKGEKVAL*