Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0883580 | XP_024631332.1 | 89.340 | 197 | 19 | 2 | 23 | 217 | 456 | 652 | 4.55e-105 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0883580 | sp|Q9FPT1|UBP12_ARATH | 75.758 | 198 | 45 | 3 | 23 | 217 | 457 | 654 | 7.86e-93 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0883580 | A0A072VGZ9 | 89.340 | 197 | 19 | 2 | 23 | 217 | 457 | 653 | 2.29e-105 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043560 | Msa0883580 | 0.803349 | 3.637005e-49 | -8.615850e-47 |
| Msa0089380 | Msa0883580 | 0.801198 | 1.008031e-48 | -8.615850e-47 |
| Msa0116080 | Msa0883580 | 0.809017 | 2.329119e-50 | -8.615850e-47 |
| Msa0613090 | Msa0883580 | 0.803796 | 2.938228e-49 | -8.615850e-47 |
| Msa0753720 | Msa0883580 | 0.830246 | 3.271673e-55 | -8.615850e-47 |
| Msa0123300 | Msa0883580 | 0.816631 | 5.005434e-52 | -8.615850e-47 |
| Msa0186950 | Msa0883580 | 0.819875 | 9.228145e-53 | -8.615850e-47 |
| Msa0242430 | Msa0883580 | 0.811904 | 5.542886e-51 | -8.615850e-47 |
| Msa0354800 | Msa0883580 | -0.810781 | 9.717866e-51 | -8.615850e-47 |
| Msa0484780 | Msa0883580 | 0.808633 | 2.814481e-50 | -8.615850e-47 |
| Msa0883580 | Msa1082500 | 0.807112 | 5.926760e-50 | -8.615850e-47 |
| Msa0883580 | Msa1192990 | 0.808336 | 3.256787e-50 | -8.615850e-47 |
| Msa0883580 | Msa1333730 | 0.806376 | 8.475995e-50 | -8.615850e-47 |
| Msa0883580 | Msa1420140 | 0.802667 | 5.031973e-49 | -8.615850e-47 |
| Msa0883580 | Msa1425100 | 0.817316 | 3.513248e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0883580 | MtrunA17_Chr1g0170261 | 89.340 | 197 | 19 | 2 | 23 | 217 | 459 | 655 | 4.45e-109 | 338 |
| Msa0883580 | MtrunA17_Chr3g0119031 | 74.619 | 197 | 48 | 2 | 23 | 217 | 457 | 653 | 1.33e-90 | 289 |
| Msa0883580 | MtrunA17_Chr5g0439971 | 74.112 | 197 | 49 | 2 | 23 | 217 | 462 | 658 | 1.90e-90 | 289 |
| Msa0883580 | MtrunA17_Chr5g0443181 | 59.375 | 128 | 51 | 1 | 93 | 219 | 84 | 211 | 4.78e-46 | 157 |
| Msa0883580 | MtrunA17_Chr5g0443194 | 64.000 | 125 | 39 | 2 | 99 | 217 | 147 | 271 | 3.14e-45 | 158 |
| Msa0883580 | MtrunA17_Chr5g0442971 | 45.669 | 127 | 43 | 1 | 97 | 223 | 226 | 326 | 3.81e-29 | 115 |
| Msa0883580 | MtrunA17_Chr5g0443161 | 61.446 | 83 | 31 | 1 | 93 | 174 | 156 | 238 | 4.42e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0883580 | AT5G06600.3 | 75.758 | 198 | 45 | 3 | 23 | 217 | 457 | 654 | 8.60e-95 | 299 |
| Msa0883580 | AT5G06600.2 | 75.758 | 198 | 45 | 3 | 23 | 217 | 456 | 653 | 7.67e-94 | 298 |
| Msa0883580 | AT5G06600.1 | 75.758 | 198 | 45 | 3 | 23 | 217 | 457 | 654 | 7.99e-94 | 298 |
| Msa0883580 | AT3G11910.4 | 73.096 | 197 | 51 | 2 | 23 | 217 | 455 | 651 | 1.27e-90 | 290 |
| Msa0883580 | AT3G11910.2 | 73.096 | 197 | 51 | 2 | 23 | 217 | 455 | 651 | 1.27e-90 | 290 |
| Msa0883580 | AT3G11910.3 | 73.096 | 197 | 51 | 2 | 23 | 217 | 456 | 652 | 1.31e-90 | 289 |
| Msa0883580 | AT3G11910.1 | 73.096 | 197 | 51 | 2 | 23 | 217 | 456 | 652 | 1.31e-90 | 289 |
Find 45 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTACTTTGTAAATTTAAA+AGG | 0.221866 | 6_1:+34848753 | None:intergenic |
| CATACCTTGAAAATGGTAAA+TGG | 0.297202 | 6_1:+34848248 | None:intergenic |
| GGTTGTTGATAACAAATTCT+AGG | 0.297693 | 6_1:-34846449 | None:intergenic |
| CATAGGTCATACCTTGAAAA+TGG | 0.297712 | 6_1:+34848241 | None:intergenic |
| AATTGGTTCTGTCGATGCTT+TGG | 0.299202 | 6_1:-34846509 | Msa0883580:CDS |
| TTGGGCAATAGCGAGGTTAT+TGG | 0.331692 | 6_1:-34846490 | Msa0883580:CDS |
| GAAGAAGTTGCGAAGGAGTT+TGG | 0.333537 | 6_1:-34847492 | Msa0883580:CDS |
| TTGGCTGAAATGTATGGTTT+TGG | 0.336275 | 6_1:+34847427 | None:intergenic |
| ATTGGTTCTGTCGATGCTTT+GGG | 0.362702 | 6_1:-34846508 | Msa0883580:CDS |
| GTGTCTTACACACCTAGTTT+TGG | 0.374735 | 6_1:+34849361 | None:intergenic |
| TAGTTACCTCTTACAAATCC+TGG | 0.377091 | 6_1:-34848789 | Msa0883580:CDS |
| GATGATCTGCACGAGCAAAT+TGG | 0.391133 | 6_1:-34848338 | Msa0883580:CDS |
| GGATATATTCTTTGATCTTG+TGG | 0.407652 | 6_1:-34848312 | Msa0883580:CDS |
| TAACAAAAGAAGATACAAAC+AGG | 0.408899 | 6_1:-34848969 | Msa0883580:CDS |
| TGAGCTGTCACTGGTCTACT+TGG | 0.411585 | 6_1:+34847408 | None:intergenic |
| GTTTAAATTCGATGATGAAC+AGG | 0.423127 | 6_1:-34848992 | Msa0883580:CDS |
| GACAGCTCAGGAGGAAGCAC+AGG | 0.444220 | 6_1:-34847394 | Msa0883580:CDS |
| GTCTACTTGGCTGAAATGTA+TGG | 0.455859 | 6_1:+34847421 | None:intergenic |
| TGTTGATATTGCAGGATTGA+AGG | 0.460065 | 6_1:-34849449 | Msa0883580:intron |
| GCTTCCTCCTGAGCTGTCAC+TGG | 0.476962 | 6_1:+34847399 | None:intergenic |
| TTAAATCTCTTGCCAAAACT+AGG | 0.479799 | 6_1:-34849373 | Msa0883580:intron |
| AAAAGAGAAGAAGAAGGAAA+AGG | 0.481260 | 6_1:-34848528 | Msa0883580:CDS |
| GCAGTATGGTGGTGAAGAAG+AGG | 0.488818 | 6_1:-34848935 | Msa0883580:intron |
| TTGAACCCAGGATTTGTAAG+AGG | 0.493196 | 6_1:+34848783 | None:intergenic |
| AAGTAGACCAGTGACAGCTC+AGG | 0.509457 | 6_1:-34847406 | Msa0883580:CDS |
| GTTGATATTGCAGGATTGAA+GGG | 0.516492 | 6_1:-34849448 | Msa0883580:intron |
| AAGGTTAAAGAAAGAACAAG+AGG | 0.516827 | 6_1:-34848552 | Msa0883580:CDS |
| AGTTACCTCTTACAAATCCT+GGG | 0.529766 | 6_1:-34848788 | Msa0883580:CDS |
| ACAGCTTACTTGAAGGTGGC+TGG | 0.530996 | 6_1:+34848653 | None:intergenic |
| AGGGCTTTAGAAGAGCAGTA+TGG | 0.531445 | 6_1:-34848949 | Msa0883580:CDS |
| GAAGAAGAAGGAAAAGGTTG+AGG | 0.550372 | 6_1:-34848522 | Msa0883580:CDS |
| GGATAAGATAATTTGTAATG+TGG | 0.558559 | 6_1:-34848691 | Msa0883580:CDS |
| AAAGGAGAGTTGTTGAACCC+AGG | 0.558997 | 6_1:+34848771 | None:intergenic |
| TCATTTGTACACCATTGTAA+AGG | 0.565109 | 6_1:-34848498 | Msa0883580:intron |
| AATTTGTAATGTGGATGAGA+AGG | 0.565506 | 6_1:-34848682 | Msa0883580:CDS |
| CGATGCTTTGGGCAATAGCG+AGG | 0.601045 | 6_1:-34846497 | Msa0883580:CDS |
| TAGACCAGTGACAGCTCAGG+AGG | 0.602851 | 6_1:-34847403 | Msa0883580:CDS |
| TGATCAGGAAGAAGTTGCGA+AGG | 0.617097 | 6_1:-34847499 | Msa0883580:intron |
| TAGCGAGGTTATTGGCAAAG+AGG | 0.623848 | 6_1:-34846482 | Msa0883580:CDS |
| TAGAGTTGTGACCTTTACAA+TGG | 0.624579 | 6_1:+34848487 | None:intergenic |
| CTATGTTCGTGAAAGTGACA+AGG | 0.634378 | 6_1:-34848712 | Msa0883580:CDS |
| TCAGACAGCTTACTTGAAGG+TGG | 0.638803 | 6_1:+34848649 | None:intergenic |
| TCTGCACGAGCAAATTGGAA+AGG | 0.658531 | 6_1:-34848333 | Msa0883580:CDS |
| GCTTTAGAAGAGCAGTATGG+TGG | 0.667170 | 6_1:-34848946 | Msa0883580:CDS |
| AACAAAAGAAGATACAAACA+GGG | 0.731126 | 6_1:-34848968 | Msa0883580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTACATAATAAAATCAT+AGG | + | chr6_1:34848168-34848187 | None:intergenic | 10.0% |
| !!! | CAAATAATAATTAGTTTTAT+AGG | + | chr6_1:34848837-34848856 | None:intergenic | 10.0% |
| !! | TAAAACCAATCATTTAAAAA+TGG | + | chr6_1:34847088-34847107 | None:intergenic | 15.0% |
| !!! | TATATTATATCCATGTTTTT+TGG | - | chr6_1:34847328-34847347 | Msa0883580:intron | 15.0% |
| !!! | TGTCATTATTTTTTTTCTTT+TGG | - | chr6_1:34847941-34847960 | Msa0883580:intron | 15.0% |
| !!! | GTCATTATTTTTTTTCTTTT+GGG | - | chr6_1:34847942-34847961 | Msa0883580:intron | 15.0% |
| !!! | TGTTAAATTATTCTTTGTTT+TGG | - | chr6_1:34848538-34848557 | Msa0883580:CDS | 15.0% |
| !!! | TCCTTAATAATGTTTTTTTT+TGG | - | chr6_1:34849168-34849187 | Msa0883580:intron | 15.0% |
| !! | ACCAAAAAAAAACATTATTA+AGG | + | chr6_1:34849172-34849191 | None:intergenic | 15.0% |
| !!! | TTTTATTTACTAAAATACAG+TGG | - | chr6_1:34849211-34849230 | Msa0883580:intron | 15.0% |
| !!! | ATAATTCATTTTCATTTAGA+TGG | - | chr6_1:34849514-34849533 | Msa0883580:intron | 15.0% |
| !! | TAATGTATAAAGTTTCTCTT+AGG | - | chr6_1:34846661-34846680 | Msa0883580:intron | 20.0% |
| !! | TAGTAGAAAACTGAATAAAA+GGG | + | chr6_1:34846882-34846901 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGTTGATATTGC+AGG | - | chr6_1:34846932-34846951 | Msa0883580:intron | 20.0% |
| !! | ATTCAGTCATATATTGAATA+TGG | - | chr6_1:34847059-34847078 | Msa0883580:intron | 20.0% |
| !!! | ATTTCAAGTAACGATAAAAA+AGG | + | chr6_1:34847148-34847167 | None:intergenic | 20.0% |
| !!! | AGTTTCAACATTTTTGTTTA+TGG | - | chr6_1:34847211-34847230 | Msa0883580:intron | 20.0% |
| !!! | CTCTATTTTTGTTTTGTTTT+TGG | - | chr6_1:34847507-34847526 | Msa0883580:intron | 20.0% |
| !! | GAGTACTTTGTAAATTTAAA+AGG | + | chr6_1:34847639-34847658 | None:intergenic | 20.0% |
| !!! | TCTAAAATGTATTGTTGAAA+AGG | + | chr6_1:34847816-34847835 | None:intergenic | 20.0% |
| !!! | TCAACAATACATTTTAGATA+AGG | - | chr6_1:34847818-34847837 | Msa0883580:intron | 20.0% |
| !! | AGAAAAAAAATAATGACAAC+TGG | + | chr6_1:34847939-34847958 | None:intergenic | 20.0% |
| !! | AATAATGAAACACATAACAT+TGG | + | chr6_1:34849043-34849062 | None:intergenic | 20.0% |
| !! | TTCATTATTTCATAAATAGC+AGG | - | chr6_1:34849054-34849073 | Msa0883580:intron | 20.0% |
| !! | TCATTATTTCATAAATAGCA+GGG | - | chr6_1:34849055-34849074 | Msa0883580:intron | 20.0% |
| !! | TGTTTGCAATACTTATTTAT+TGG | - | chr6_1:34849490-34849509 | Msa0883580:intron | 20.0% |
| !!! | AACATGTTTTCTTTTTTTAC+AGG | - | chr6_1:34849838-34849857 | Msa0883580:intron | 20.0% |
| ! | GTAGTAGAAAACTGAATAAA+AGG | + | chr6_1:34846883-34846902 | None:intergenic | 25.0% |
| ! | AGTAACGATAAAAAAGGATA+TGG | + | chr6_1:34847142-34847161 | None:intergenic | 25.0% |
| ! | TAACAAAAGAAGATACAAAC+AGG | - | chr6_1:34847420-34847439 | Msa0883580:CDS | 25.0% |
| ! | AACAAAAGAAGATACAAACA+GGG | - | chr6_1:34847421-34847440 | Msa0883580:CDS | 25.0% |
| ! | ATATTCTGTTTGCATTTGTT+TGG | - | chr6_1:34847479-34847498 | Msa0883580:CDS | 25.0% |
| !! | GGATAAGATAATTTGTAATG+TGG | - | chr6_1:34847698-34847717 | Msa0883580:intron | 25.0% |
| ! | AAAATAATGACAACTGGAAA+AGG | + | chr6_1:34847933-34847952 | None:intergenic | 25.0% |
| ! | TCAACTTTGCAAATCATAAT+AGG | - | chr6_1:34848596-34848615 | Msa0883580:intron | 25.0% |
| ! | TGCAAATCATAATAGGATTT+AGG | - | chr6_1:34848603-34848622 | Msa0883580:intron | 25.0% |
| ! | AGTGTTTATTCATGAAAGAA+GGG | + | chr6_1:34848741-34848760 | None:intergenic | 25.0% |
| ! | TAGTGTTTATTCATGAAAGA+AGG | + | chr6_1:34848742-34848761 | None:intergenic | 25.0% |
| ! | AAATAGATCAACAATACCAA+AGG | + | chr6_1:34848802-34848821 | None:intergenic | 25.0% |
| ! | TTTGGTATTGTTGATCTATT+TGG | - | chr6_1:34848801-34848820 | Msa0883580:intron | 25.0% |
| ! | ATAATGACACATAAAAACTC+AGG | + | chr6_1:34849300-34849319 | None:intergenic | 25.0% |
| ! | TTGAAGAACCTAAATTTACA+AGG | - | chr6_1:34849360-34849379 | Msa0883580:intron | 25.0% |
| !! | TCAAAGTACCTTGTAAATTT+AGG | + | chr6_1:34849371-34849390 | None:intergenic | 25.0% |
| ! | ACTTTAAGTATCAGTTAGTT+AGG | - | chr6_1:34849726-34849745 | Msa0883580:intron | 25.0% |
| !!! | TTTTCTTTTTTTACAGGTTC+AGG | - | chr6_1:34849844-34849863 | Msa0883580:intron | 25.0% |
| !! | CAGGTAATGATTTTTACAAT+TGG | - | chr6_1:34849863-34849882 | Msa0883580:intron | 25.0% |
| CTATGATTGATTACTGTTAG+TGG | - | chr6_1:34846505-34846524 | Msa0883580:CDS | 30.0% | |
| ! | ACATCTTTTGACACTATCAT+CGG | + | chr6_1:34846704-34846723 | None:intergenic | 30.0% |
| AAAAGGGTTTGGAAATATCA+AGG | + | chr6_1:34846866-34846885 | None:intergenic | 30.0% | |
| GAAAACTGAATAAAAGGGTT+TGG | + | chr6_1:34846877-34846896 | None:intergenic | 30.0% | |
| ! | ACTACTGATATTTCCAGTTT+TGG | - | chr6_1:34846898-34846917 | Msa0883580:intron | 30.0% |
| ! | CTACTGATATTTCCAGTTTT+GGG | - | chr6_1:34846899-34846918 | Msa0883580:intron | 30.0% |
| ! | AAAAAAGCATATCCCAAAAC+TGG | + | chr6_1:34846914-34846933 | None:intergenic | 30.0% |
| TTAAATCTCTTGCCAAAACT+AGG | - | chr6_1:34847016-34847035 | Msa0883580:intron | 30.0% | |
| !!! | GGTAGCCATTTTTAAATGAT+TGG | - | chr6_1:34847080-34847099 | Msa0883580:intron | 30.0% |
| !!! | ATGATTGGTTTTACTTTGAC+CGG | - | chr6_1:34847095-34847114 | Msa0883580:intron | 30.0% |
| AAAAAGGATATGGAACTTTG+TGG | + | chr6_1:34847132-34847151 | None:intergenic | 30.0% | |
| TACCAAATAATCCAGATACA+AGG | + | chr6_1:34847189-34847208 | None:intergenic | 30.0% | |
| AATTGTCAATTCATGCTACA+AGG | + | chr6_1:34847267-34847286 | None:intergenic | 30.0% | |
| AAAGTCATGACCAAAAAACA+TGG | + | chr6_1:34847341-34847360 | None:intergenic | 30.0% | |
| !! | AATGTAACTTGTGTGTTTTC+AGG | - | chr6_1:34847375-34847394 | Msa0883580:intron | 30.0% |
| GTTTAAATTCGATGATGAAC+AGG | - | chr6_1:34847397-34847416 | Msa0883580:CDS | 30.0% | |
| AATTTGTAATGTGGATGAGA+AGG | - | chr6_1:34847707-34847726 | Msa0883580:intron | 30.0% | |
| AAGGTTAAAGAAAGAACAAG+AGG | - | chr6_1:34847837-34847856 | Msa0883580:intron | 30.0% | |
| AAAAGAGAAGAAGAAGGAAA+AGG | - | chr6_1:34847861-34847880 | Msa0883580:intron | 30.0% | |
| TCATTTGTACACCATTGTAA+AGG | - | chr6_1:34847891-34847910 | Msa0883580:intron | 30.0% | |
| ACTGATAATAAGAGTTCGTA+AGG | - | chr6_1:34847978-34847997 | Msa0883580:intron | 30.0% | |
| GGATATATTCTTTGATCTTG+TGG | - | chr6_1:34848077-34848096 | Msa0883580:intron | 30.0% | |
| CATACCTTGAAAATGGTAAA+TGG | + | chr6_1:34848144-34848163 | None:intergenic | 30.0% | |
| TGTCTAATCAATCCTGAATT+TGG | - | chr6_1:34848189-34848208 | Msa0883580:intron | 30.0% | |
| AACAACTACTTGTGGAAAAA+TGG | + | chr6_1:34848237-34848256 | None:intergenic | 30.0% | |
| CTAGTTAAACAGATGACAAA+AGG | + | chr6_1:34848321-34848340 | None:intergenic | 30.0% | |
| TTTAACTAGAACTGAAAGAG+TGG | - | chr6_1:34848332-34848351 | Msa0883580:CDS | 30.0% | |
| AGTGGAAAAAAAATCGTTCT+GGG | - | chr6_1:34848350-34848369 | Msa0883580:CDS | 30.0% | |
| TAACATAATTCACCAAATGC+AGG | + | chr6_1:34848523-34848542 | None:intergenic | 30.0% | |
| AACACAGAAAATCAAAGAGA+TGG | + | chr6_1:34848572-34848591 | None:intergenic | 30.0% | |
| ATTGAAGTTTGTCCAAACAT+GGG | - | chr6_1:34848655-34848674 | Msa0883580:intron | 30.0% | |
| AAAGGATGAAGAAGTAAACA+AGG | + | chr6_1:34848784-34848803 | None:intergenic | 30.0% | |
| TTGTTTACTTCTTCATCCTT+TGG | - | chr6_1:34848783-34848802 | Msa0883580:CDS | 30.0% | |
| TTATTTCATAAATAGCAGGG+TGG | - | chr6_1:34849058-34849077 | Msa0883580:intron | 30.0% | |
| !! | TATAACCTCACTTTTAACCA+TGG | - | chr6_1:34849111-34849130 | Msa0883580:intron | 30.0% |
| ! | TTATGTGTCATTATGAACTC+TGG | - | chr6_1:34849306-34849325 | Msa0883580:intron | 30.0% |
| AACCAATGAAAACAACCAAA+AGG | - | chr6_1:34849454-34849473 | Msa0883580:intron | 30.0% | |
| ACCAATGAAAACAACCAAAA+GGG | - | chr6_1:34849455-34849474 | Msa0883580:intron | 30.0% | |
| TGTGTTCTTATATTGTGCAT+AGG | - | chr6_1:34849542-34849561 | Msa0883580:intron | 30.0% | |
| TTGATTACTGTTAGTGGCTA+TGG | - | chr6_1:34846511-34846530 | Msa0883580:CDS | 35.0% | |
| ! | GTTTTCAGTTGTAGCTGATT+AGG | - | chr6_1:34846596-34846615 | Msa0883580:intron | 35.0% |
| AGTTGTAGCTGATTAGGTAT+TGG | - | chr6_1:34846602-34846621 | Msa0883580:intron | 35.0% | |
| ! | TCATCGGCTATAAAACACTA+AGG | + | chr6_1:34846688-34846707 | None:intergenic | 35.0% |
| !!! | ATTGCTGTTTTGTTTGTGTG+TGG | - | chr6_1:34846839-34846858 | Msa0883580:intron | 35.0% |
| TGTTGATATTGCAGGATTGA+AGG | - | chr6_1:34846940-34846959 | Msa0883580:intron | 35.0% | |
| GTTGATATTGCAGGATTGAA+GGG | - | chr6_1:34846941-34846960 | Msa0883580:intron | 35.0% | |
| CTTTGTGGTTTAAGTCAATC+CGG | + | chr6_1:34847117-34847136 | None:intergenic | 35.0% | |
| TGAAAAACTGTCCTTGTATC+TGG | - | chr6_1:34847175-34847194 | Msa0883580:intron | 35.0% | |
| GTCCTTGTATCTGGATTATT+TGG | - | chr6_1:34847184-34847203 | Msa0883580:intron | 35.0% | |
| TAGTTACCTCTTACAAATCC+TGG | - | chr6_1:34847600-34847619 | Msa0883580:intron | 35.0% | |
| AGTTACCTCTTACAAATCCT+GGG | - | chr6_1:34847601-34847620 | Msa0883580:intron | 35.0% | |
| AGAGGAAAAAGAGAAGAAGA+AGG | - | chr6_1:34847855-34847874 | Msa0883580:intron | 35.0% | |
| TAGAGTTGTGACCTTTACAA+TGG | + | chr6_1:34847905-34847924 | None:intergenic | 35.0% | |
| !! | GATGCCATTTACCATTTTCA+AGG | - | chr6_1:34848137-34848156 | Msa0883580:intron | 35.0% |
| CATAGGTCATACCTTGAAAA+TGG | + | chr6_1:34848151-34848170 | None:intergenic | 35.0% | |
| TTGAGATCAAAGCCAAATTC+AGG | + | chr6_1:34848204-34848223 | None:intergenic | 35.0% | |
| CAAAGATGAACAACTACTTG+TGG | + | chr6_1:34848245-34848264 | None:intergenic | 35.0% | |
| TAGTTGTTCATCTTTGCCAA+TGG | - | chr6_1:34848249-34848268 | Msa0883580:intron | 35.0% | |
| GGATACAATCATCAGACATA+TGG | + | chr6_1:34848300-34848319 | None:intergenic | 35.0% | |
| GAGTGGAAAAAAAATCGTTC+TGG | - | chr6_1:34848349-34848368 | Msa0883580:CDS | 35.0% | |
| GTGGAAAAAAAATCGTTCTG+GGG | - | chr6_1:34848351-34848370 | Msa0883580:CDS | 35.0% | |
| ATGAAATTGAGAGATCCTTC+TGG | - | chr6_1:34848397-34848416 | Msa0883580:intron | 35.0% | |
| GATTGAAGTTTGTCCAAACA+TGG | - | chr6_1:34848654-34848673 | Msa0883580:intron | 35.0% | |
| TTGAAGTTTGTCCAAACATG+GGG | - | chr6_1:34848656-34848675 | Msa0883580:intron | 35.0% | |
| GAAGAAGTAAACAAGGAATG+TGG | + | chr6_1:34848777-34848796 | None:intergenic | 35.0% | |
| ! | CTGATAATGAAGCTTTGATC+AGG | - | chr6_1:34848875-34848894 | Msa0883580:intron | 35.0% |
| ! | TTGGCTGAAATGTATGGTTT+TGG | + | chr6_1:34848965-34848984 | None:intergenic | 35.0% |
| TTCAAAATCACACACTACCA+TGG | + | chr6_1:34849131-34849150 | None:intergenic | 35.0% | |
| ! | TGTGTAACTGTTGTTTAGTC+TGG | - | chr6_1:34849238-34849257 | Msa0883580:intron | 35.0% |
| !! | TCCCTTTTGGTTGTTTTCAT+TGG | + | chr6_1:34849459-34849478 | None:intergenic | 35.0% |
| AACCTAGAAAGGGAGAAAAA+GGG | + | chr6_1:34849599-34849618 | None:intergenic | 35.0% | |
| CTTTCCTTACAACCTAGAAA+GGG | + | chr6_1:34849609-34849628 | None:intergenic | 35.0% | |
| TCTTTCCTTACAACCTAGAA+AGG | + | chr6_1:34849610-34849629 | None:intergenic | 35.0% | |
| ATGACATCAAATTCAGTTGC+TGG | - | chr6_1:34849652-34849671 | Msa0883580:intron | 35.0% | |
| ! | ATTCGTGACATGCGATTTTA+AGG | + | chr6_1:34849704-34849723 | None:intergenic | 35.0% |
| !!! | TGACTCTTTTTTAGCAGTAG+TGG | - | chr6_1:34849783-34849802 | Msa0883580:intron | 35.0% |
| TGGCAAAGAGGAAAAATTCA+AGG | - | chr6_1:34849919-34849938 | Msa0883580:intron | 35.0% | |
| ! | GTGTCTTACACACCTAGTTT+TGG | + | chr6_1:34847031-34847050 | None:intergenic | 40.0% |
| GCTACAAGGATAGTCATATG+CGG | + | chr6_1:34847253-34847272 | None:intergenic | 40.0% | |
| TTGAACCCAGGATTTGTAAG+AGG | + | chr6_1:34847609-34847628 | None:intergenic | 40.0% | |
| CTATGTTCGTGAAAGTGACA+AGG | - | chr6_1:34847677-34847696 | Msa0883580:intron | 40.0% | |
| GAATCAGACAGCTTACTTGA+AGG | + | chr6_1:34847746-34847765 | None:intergenic | 40.0% | |
| GAAGAAGAAGGAAAAGGTTG+AGG | - | chr6_1:34847867-34847886 | Msa0883580:intron | 40.0% | |
| ATCATCATCACGAGCAATCT+GGG | + | chr6_1:34848037-34848056 | None:intergenic | 40.0% | |
| ! | CTCACTCATTCTTTTCCAGA+AGG | + | chr6_1:34848415-34848434 | None:intergenic | 40.0% |
| GATGCAACAACAGAGATCAT+AGG | + | chr6_1:34848452-34848471 | None:intergenic | 40.0% | |
| !! | TTTTGCTGTCAGTTGCCTAT+TGG | - | chr6_1:34848491-34848510 | Msa0883580:intron | 40.0% |
| AAATGCAGGCTACATCCAAT+AGG | + | chr6_1:34848509-34848528 | None:intergenic | 40.0% | |
| TATTGGATGTAGCCTGCATT+TGG | - | chr6_1:34848508-34848527 | Msa0883580:CDS | 40.0% | |
| CAAAAACGTTGGTACTCAAC+TGG | + | chr6_1:34848927-34848946 | None:intergenic | 40.0% | |
| ! | CAGTTGAGTACCAACGTTTT+TGG | - | chr6_1:34848925-34848944 | Msa0883580:intron | 40.0% |
| !! | AGTACCAACGTTTTTGGATG+TGG | - | chr6_1:34848931-34848950 | Msa0883580:intron | 40.0% |
| !! | GTACCAACGTTTTTGGATGT+GGG | - | chr6_1:34848932-34848951 | Msa0883580:intron | 40.0% |
| GTCTACTTGGCTGAAATGTA+TGG | + | chr6_1:34848971-34848990 | None:intergenic | 40.0% | |
| CACTACCATGGTTAAAAGTG+AGG | + | chr6_1:34849119-34849138 | None:intergenic | 40.0% | |
| ! | CAATCACAGTGAATCCCTTT+TGG | + | chr6_1:34849472-34849491 | None:intergenic | 40.0% |
| ACCTAGAAAGGGAGAAAAAG+GGG | + | chr6_1:34849598-34849617 | None:intergenic | 40.0% | |
| CAACCTAGAAAGGGAGAAAA+AGG | + | chr6_1:34849600-34849619 | None:intergenic | 40.0% | |
| TTCTCCCTTTCTAGGTTGTA+AGG | - | chr6_1:34849602-34849621 | Msa0883580:intron | 40.0% | |
| !!! | ATGCGATTTTAAGGTCGTCA+AGG | + | chr6_1:34849695-34849714 | None:intergenic | 40.0% |
| !! | AATTGGTTCTGTCGATGCTT+TGG | - | chr6_1:34849880-34849899 | Msa0883580:intron | 40.0% |
| !! | ATTGGTTCTGTCGATGCTTT+GGG | - | chr6_1:34849881-34849900 | Msa0883580:intron | 40.0% |
| GATACTGATATAAGCCGCTG+TGG | - | chr6_1:34847290-34847309 | Msa0883580:intron | 45.0% | |
| TAGATTCAACAACGCCACAG+CGG | + | chr6_1:34847307-34847326 | None:intergenic | 45.0% | |
| !! | AGGGCTTTAGAAGAGCAGTA+TGG | - | chr6_1:34847440-34847459 | Msa0883580:CDS | 45.0% |
| !! | GCTTTAGAAGAGCAGTATGG+TGG | - | chr6_1:34847443-34847462 | Msa0883580:CDS | 45.0% |
| AAAGGAGAGTTGTTGAACCC+AGG | + | chr6_1:34847621-34847640 | None:intergenic | 45.0% | |
| TCAGACAGCTTACTTGAAGG+TGG | + | chr6_1:34847743-34847762 | None:intergenic | 45.0% | |
| TCATCATCACGAGCAATCTG+GGG | + | chr6_1:34848036-34848055 | None:intergenic | 45.0% | |
| GATCATCATCACGAGCAATC+TGG | + | chr6_1:34848038-34848057 | None:intergenic | 45.0% | |
| GATGATCTGCACGAGCAAAT+TGG | - | chr6_1:34848051-34848070 | Msa0883580:intron | 45.0% | |
| TCTGCACGAGCAAATTGGAA+AGG | - | chr6_1:34848056-34848075 | Msa0883580:intron | 45.0% | |
| CAAGGAGACATTCACTCCAT+TGG | + | chr6_1:34848268-34848287 | None:intergenic | 45.0% | |
| GACATATGGCAACACTTGCA+AGG | + | chr6_1:34848286-34848305 | None:intergenic | 45.0% | |
| ! | AAACTGACTAGCCCCATGTT+TGG | + | chr6_1:34848670-34848689 | None:intergenic | 45.0% |
| TGATCAGGAAGAAGTTGCGA+AGG | - | chr6_1:34848890-34848909 | Msa0883580:intron | 45.0% | |
| GAAGAAGTTGCGAAGGAGTT+TGG | - | chr6_1:34848897-34848916 | Msa0883580:intron | 45.0% | |
| TTGCCCACATCCAAAAACGT+TGG | + | chr6_1:34848938-34848957 | None:intergenic | 45.0% | |
| CACAGGCAGTAAGTAGATCA+AGG | - | chr6_1:34849012-34849031 | Msa0883580:intron | 45.0% | |
| ! | CTCAGGTGCTACAAGAACTA+CGG | + | chr6_1:34849283-34849302 | None:intergenic | 45.0% |
| ! | TCCCCTTTTTCTCCCTTTCT+AGG | - | chr6_1:34849594-34849613 | Msa0883580:intron | 45.0% |
| TTGGGCAATAGCGAGGTTAT+TGG | - | chr6_1:34849899-34849918 | Msa0883580:intron | 45.0% | |
| TAGCGAGGTTATTGGCAAAG+AGG | - | chr6_1:34849907-34849926 | Msa0883580:intron | 45.0% | |
| !!! | AACATTATTTTTAATTAATT+AGG | - | chr6_1:34848626-34848645 | Msa0883580:intron | 5.0% |
| !!! | TTAGTAAATAAAAAAAATTT+TGG | + | chr6_1:34849204-34849223 | None:intergenic | 5.0% |
| GCAACAACTGTGCAGTCATC+TGG | - | chr6_1:34846774-34846793 | Msa0883580:intron | 50.0% | |
| ! | GCAGTATGGTGGTGAAGAAG+AGG | - | chr6_1:34847454-34847473 | Msa0883580:CDS | 50.0% |
| ACAGCTTACTTGAAGGTGGC+TGG | + | chr6_1:34847739-34847758 | None:intergenic | 50.0% | |
| ! | TGAGCTGTCACTGGTCTACT+TGG | + | chr6_1:34848984-34849003 | None:intergenic | 50.0% |
| AAGTAGACCAGTGACAGCTC+AGG | - | chr6_1:34848983-34849002 | Msa0883580:CDS | 50.0% | |
| TTGCTGCTAGCGCCTTCTGT+TGG | - | chr6_1:34846809-34846828 | Msa0883580:intron | 55.0% | |
| GCAATGCTGCTGCCAACAGA+AGG | + | chr6_1:34846824-34846843 | None:intergenic | 55.0% | |
| TAGACCAGTGACAGCTCAGG+AGG | - | chr6_1:34848986-34849005 | Msa0883580:CDS | 55.0% | |
| ! | CGATGCTTTGGGCAATAGCG+AGG | - | chr6_1:34849892-34849911 | Msa0883580:intron | 55.0% |
| GCTTCCTCCTGAGCTGTCAC+TGG | + | chr6_1:34848993-34849012 | None:intergenic | 60.0% | |
| ! | GACAGCTCAGGAGGAAGCAC+AGG | - | chr6_1:34848995-34849014 | Msa0883580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 34846450 | 34849961 | 34846450 | ID=Msa0883580;Name=Msa0883580 |
| chr6_1 | mRNA | 34846450 | 34849961 | 34846450 | ID=Msa0883580-mRNA-1;Parent=Msa0883580;Name=Msa0883580-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.2|0.09|0.27|0.5|0.63|11|0|251 |
| chr6_1 | exon | 34849956 | 34849961 | 34849956 | ID=Msa0883580-mRNA-1:exon:8474;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34849794 | 34849801 | 34849794 | ID=Msa0883580-mRNA-1:exon:8473;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34849374 | 34849457 | 34849374 | ID=Msa0883580-mRNA-1:exon:8472;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34848936 | 34849014 | 34848936 | ID=Msa0883580-mRNA-1:exon:8471;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34848662 | 34848808 | 34848662 | ID=Msa0883580-mRNA-1:exon:8470;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34848499 | 34848576 | 34848499 | ID=Msa0883580-mRNA-1:exon:8469;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34848253 | 34848372 | 34848253 | ID=Msa0883580-mRNA-1:exon:8468;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34847392 | 34847514 | 34847392 | ID=Msa0883580-mRNA-1:exon:8467;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34847329 | 34847335 | 34847329 | ID=Msa0883580-mRNA-1:exon:8466;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34846871 | 34846878 | 34846871 | ID=Msa0883580-mRNA-1:exon:8465;Parent=Msa0883580-mRNA-1 |
| chr6_1 | exon | 34846450 | 34846545 | 34846450 | ID=Msa0883580-mRNA-1:exon:8464;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34849956 | 34849961 | 34849956 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34849794 | 34849801 | 34849794 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34849374 | 34849457 | 34849374 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34848936 | 34849014 | 34848936 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34848662 | 34848808 | 34848662 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34848499 | 34848576 | 34848499 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34848253 | 34848372 | 34848253 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34847392 | 34847514 | 34847392 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34847329 | 34847335 | 34847329 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34846871 | 34846878 | 34846871 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| chr6_1 | CDS | 34846450 | 34846545 | 34846450 | ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
