AlfalfaGEDB | Msa0883580

M. sativa cultivar zhongmu-4 / Msa0883580

KEGG: K11838
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883580	XP_024631332.1	89.340	197	19	2	23	217	456	652	4.55e-105	339

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883580	sp\|Q9FPT1\|UBP12_ARATH	75.758	198	45	3	23	217	457	654	7.86e-93	298

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883580	A0A072VGZ9	89.340	197	19	2	23	217	457	653	2.29e-105	338

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043560	Msa0883580	0.803349	3.637005e-49	-8.615850e-47
Msa0089380	Msa0883580	0.801198	1.008031e-48	-8.615850e-47
Msa0116080	Msa0883580	0.809017	2.329119e-50	-8.615850e-47
Msa0123300	Msa0883580	0.816631	5.005434e-52	-8.615850e-47
Msa0186950	Msa0883580	0.819875	9.228145e-53	-8.615850e-47
Msa0242430	Msa0883580	0.811904	5.542886e-51	-8.615850e-47
Msa0354800	Msa0883580	-0.810781	9.717866e-51	-8.615850e-47
Msa0484780	Msa0883580	0.808633	2.814481e-50	-8.615850e-47
Msa0613090	Msa0883580	0.803796	2.938228e-49	-8.615850e-47
Msa0753720	Msa0883580	0.830246	3.271673e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883580	MtrunA17_Chr1g0170261	89.340	197	19	2	23	217	459	655	4.45e-109	338
Msa0883580	MtrunA17_Chr3g0119031	74.619	197	48	2	23	217	457	653	1.33e-90	289
Msa0883580	MtrunA17_Chr5g0439971	74.112	197	49	2	23	217	462	658	1.90e-90	289
Msa0883580	MtrunA17_Chr5g0443181	59.375	128	51	1	93	219	84	211	4.78e-46	157
Msa0883580	MtrunA17_Chr5g0443194	64.000	125	39	2	99	217	147	271	3.14e-45	158
Msa0883580	MtrunA17_Chr5g0442971	45.669	127	43	1	97	223	226	326	3.81e-29	115
Msa0883580	MtrunA17_Chr5g0443161	61.446	83	31	1	93	174	156	238	4.42e-22	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883580	AT5G06600.3	75.758	198	45	3	23	217	457	654	8.60e-95	299
Msa0883580	AT5G06600.2	75.758	198	45	3	23	217	456	653	7.67e-94	298
Msa0883580	AT5G06600.1	75.758	198	45	3	23	217	457	654	7.99e-94	298
Msa0883580	AT3G11910.4	73.096	197	51	2	23	217	455	651	1.27e-90	290
Msa0883580	AT3G11910.2	73.096	197	51	2	23	217	455	651	1.27e-90	290
Msa0883580	AT3G11910.3	73.096	197	51	2	23	217	456	652	1.31e-90	289
Msa0883580	AT3G11910.1	73.096	197	51	2	23	217	456	652	1.31e-90	289

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Find 45 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAGAAGAAGGAAA+AGG	0.481260	6_1:-34848528	Msa0883580:CDS
AAAGGAGAGTTGTTGAACCC+AGG	0.558997	6_1:+34848771	None:intergenic
AACAAAAGAAGATACAAACA+GGG	0.731126	6_1:-34848968	Msa0883580:CDS
AAGGTTAAAGAAAGAACAAG+AGG	0.516827	6_1:-34848552	Msa0883580:CDS
AAGTAGACCAGTGACAGCTC+AGG	0.509457	6_1:-34847406	Msa0883580:CDS
AATTGGTTCTGTCGATGCTT+TGG	0.299202	6_1:-34846509	Msa0883580:CDS
AATTTGTAATGTGGATGAGA+AGG	0.565506	6_1:-34848682	Msa0883580:CDS
ACAGCTTACTTGAAGGTGGC+TGG	0.530996	6_1:+34848653	None:intergenic
AGGGCTTTAGAAGAGCAGTA+TGG	0.531445	6_1:-34848949	Msa0883580:CDS
AGTTACCTCTTACAAATCCT+GGG	0.529766	6_1:-34848788	Msa0883580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATGATTGATTACTGTTAG+TGG	-	chr6_1:34846505-34846524	Msa0883580:CDS	30.0%
AAAAGGGTTTGGAAATATCA+AGG	+	chr6_1:34846866-34846885	None:intergenic	30.0%
GAAAACTGAATAAAAGGGTT+TGG	+	chr6_1:34846877-34846896	None:intergenic	30.0%
TTAAATCTCTTGCCAAAACT+AGG	-	chr6_1:34847016-34847035	Msa0883580:intron	30.0%
AAAAAGGATATGGAACTTTG+TGG	+	chr6_1:34847132-34847151	None:intergenic	30.0%
TACCAAATAATCCAGATACA+AGG	+	chr6_1:34847189-34847208	None:intergenic	30.0%
AATTGTCAATTCATGCTACA+AGG	+	chr6_1:34847267-34847286	None:intergenic	30.0%
AAAGTCATGACCAAAAAACA+TGG	+	chr6_1:34847341-34847360	None:intergenic	30.0%
GTTTAAATTCGATGATGAAC+AGG	-	chr6_1:34847397-34847416	Msa0883580:CDS	30.0%
AATTTGTAATGTGGATGAGA+AGG	-	chr6_1:34847707-34847726	Msa0883580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	34846450	34849961	34846450	ID=Msa0883580;Name=Msa0883580
chr6_1	mRNA	34846450	34849961	34846450	ID=Msa0883580-mRNA-1;Parent=Msa0883580;Name=Msa0883580-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0.2\|0.09\|0.27\|0.5\|0.63\|11\|0\|251
chr6_1	exon	34849956	34849961	34849956	ID=Msa0883580-mRNA-1:exon:8474;Parent=Msa0883580-mRNA-1
chr6_1	exon	34849794	34849801	34849794	ID=Msa0883580-mRNA-1:exon:8473;Parent=Msa0883580-mRNA-1
chr6_1	exon	34849374	34849457	34849374	ID=Msa0883580-mRNA-1:exon:8472;Parent=Msa0883580-mRNA-1
chr6_1	exon	34848936	34849014	34848936	ID=Msa0883580-mRNA-1:exon:8471;Parent=Msa0883580-mRNA-1
chr6_1	exon	34848662	34848808	34848662	ID=Msa0883580-mRNA-1:exon:8470;Parent=Msa0883580-mRNA-1
chr6_1	exon	34848499	34848576	34848499	ID=Msa0883580-mRNA-1:exon:8469;Parent=Msa0883580-mRNA-1
chr6_1	exon	34848253	34848372	34848253	ID=Msa0883580-mRNA-1:exon:8468;Parent=Msa0883580-mRNA-1
chr6_1	exon	34847392	34847514	34847392	ID=Msa0883580-mRNA-1:exon:8467;Parent=Msa0883580-mRNA-1
chr6_1	exon	34847329	34847335	34847329	ID=Msa0883580-mRNA-1:exon:8466;Parent=Msa0883580-mRNA-1
chr6_1	exon	34846871	34846878	34846871	ID=Msa0883580-mRNA-1:exon:8465;Parent=Msa0883580-mRNA-1
chr6_1	exon	34846450	34846545	34846450	ID=Msa0883580-mRNA-1:exon:8464;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34849956	34849961	34849956	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34849794	34849801	34849794	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34849374	34849457	34849374	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34848936	34849014	34848936	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34848662	34848808	34848662	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34848499	34848576	34848499	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34848253	34848372	34848253	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34847392	34847514	34847392	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34847329	34847335	34847329	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34846871	34846878	34846871	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1
chr6_1	CDS	34846450	34846545	34846450	ID=Msa0883580-mRNA-1:cds;Parent=Msa0883580-mRNA-1

Gene Sequence

>Msa0883580

ATGTTTCTGATTAGGATTGAAGGGAATTGTTCATTAGTTTTTCTTTTTGCTTTGATAATCTTTTGTTTCAGTTTTGTTAAATCTCTTGCCAAAACTAGGTTTAAATTCGATGATGAACAGGTAACAAAAGAAGATACAAACAGGGCTTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCTTACAAATCCTGGGTTCAACAACTCTCCTTTTAAATTTACAAAGTACTCAAATGCTTACATGCTTGTCTATGTTCGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAGAAGGACATTGCCAGCCACCTTCAAATAAGGTTAAAGAAAGAACAAGAGGAAAAAGAGAAGAAGAAGGAAAAGGTTGAGGCTCATTTGTACACCATTGTAAAGATTGCTCGTGATGATGATCTGCACGAGCAAATTGGAAAGGATATATTCTTTGATCTTGTGGATCATGATAAAGTGCGAAGTTTTCGCATTCAAAAACAGATGCCATTTACCATTTTCAAGGAAGAAGTTGCGAAGGAGTTTGGCATACCAGTTGAGTACCAACGTTTTTGGATGTGGGCAAAGCGCCAAAACCATACATTTCAGCCAAGTAGACCAGTGACAGCTCAGGAGGAAGCACAGGCAGGTGGCTATGGCATAGTAATGATTTTTACAATTGGTTCTGTCGATGCTTTGGGCAATAGCGAGGTTATTGGCAAAGAGGAAAAATTCAAGGTTGTTGATAACAAATTCTAG

Protein sequence

>Msa0883580

MFLIRIEGNCSLVFLFALIIFCFSFVKSLAKTRFKFDDEQVTKEDTNRALEEQYGGEEELPLTNPGFNNSPFKFTKYSNAYMLVYVRESDKDKIICNVDEKDIASHLQIRLKKEQEEKEKKKEKVEAHLYTIVKIARDDDLHEQIGKDIFFDLVDHDKVRSFRIQKQMPFTIFKEEVAKEFGIPVEYQRFWMWAKRQNHTFQPSRPVTAQEEAQAGGYGIVMIFTIGSVDALGNSEVIGKEEKFKVVDNKF*