AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089380 MtrunA17_Chr1g0207821 92.932 665 7 3 45 669 1 665 0.0 1254
Msa0089380 MtrunA17_Chr2g0311721 30.769 247 144 10 117 360 57 279 1.65e-19 90.1
Msa0089380 MtrunA17_Chr1g0192821 26.033 242 147 8 118 356 63 275 6.75e-17 84.7
Msa0089380 MtrunA17_Chr2g0286241 26.380 326 184 14 121 415 132 432 7.81e-16 81.3
Msa0089380 MtrunA17_Chr2g0286241 23.620 326 195 14 47 356 6 293 1.97e-11 67.4
Msa0089380 MtrunA17_Chr4g0066851 30.435 207 117 9 121 321 140 325 8.00e-16 81.3
Msa0089380 MtrunA17_Chr4g0074871 27.500 200 122 7 124 322 328 505 2.25e-14 77.0
Msa0089380 MtrunA17_Chr1g0197401 25.703 249 133 10 120 350 15 229 6.86e-13 71.6
Msa0089380 MtrunA17_Chr7g0272641 25.108 231 132 8 129 350 184 382 1.02e-12 71.2
Msa0089380 MtrunA17_Chr1g0198221 27.363 201 116 8 129 321 74 252 3.10e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089380 AT5G50310.1 69.646 649 146 8 59 662 15 657 0.0 819
Msa0089380 AT4G04670.1 25.728 206 124 6 121 322 314 494 8.55e-16 82.0
Msa0089380 AT5G18590.2 31.000 200 115 8 124 321 129 307 9.99e-16 81.6
Msa0089380 AT5G18590.1 31.000 200 115 8 124 321 129 307 9.99e-16 81.6
Msa0089380 AT3G07720.1 29.694 229 135 9 124 350 67 271 1.20e-13 73.2
Msa0089380 AT1G74150.4 25.000 228 136 9 129 350 56 254 2.71e-13 73.6
Msa0089380 AT1G74150.2 25.000 228 136 9 129 350 72 270 3.14e-13 73.2
Msa0089380 AT1G74150.2 26.108 203 127 8 124 321 14 198 1.05e-11 68.6
Msa0089380 AT1G74150.1 25.000 228 136 9 129 350 72 270 3.20e-13 73.2
Msa0089380 AT1G74150.1 26.108 203 127 8 124 321 14 198 1.04e-11 68.6
Msa0089380 AT1G74150.3 25.000 228 136 9 129 350 72 270 3.48e-13 73.2
Msa0089380 AT1G74150.3 26.108 203 127 8 124 321 14 198 1.15e-11 68.2
Msa0089380 AT3G05420.1 28.500 200 120 8 124 321 236 414 6.73e-13 72.4
Msa0089380 AT3G05420.2 28.500 200 120 8 124 321 237 415 6.74e-13 72.4
Msa0089380 AT5G27630.3 27.500 200 122 7 124 321 237 415 7.57e-12 68.9
Msa0089380 AT5G27630.1 27.500 200 122 7 124 321 237 415 8.43e-12 68.9
Msa0089380 AT5G27630.4 27.500 200 122 7 124 321 237 415 9.17e-12 68.9
Msa0089380 AT2G33070.1 22.867 293 174 10 128 379 163 444 2.69e-11 67.0
Msa0089380 AT2G33070.2 22.867 293 174 10 128 379 163 444 2.69e-11 67.0
Msa0089380 AT5G27630.2 27.500 200 122 7 124 321 237 415 3.01e-11 67.0
Msa0089380 AT2G33070.3 22.867 293 174 10 128 379 165 446 3.14e-11 66.6

Find 184 sgRNAs with CRISPR-Local

Find 668 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGACCTTGATCAATTTA+AGG 0.143374 1_2:+70849575 Msa0089380:CDS
TGGGAACAACTTAATTTAAA+AGG 0.179060 1_2:+70848098 Msa0089380:CDS
TTGTTCTTGAATGAGCTTTA+TGG 0.213686 1_2:+70850746 Msa0089380:CDS
TGAAGTTCTAATCGAGTATT+TGG 0.263409 1_2:+70856986 Msa0089380:three_prime_UTR
TAATCTTTGATGCAATATTC+TGG 0.265820 1_2:-70851267 None:intergenic
AAGAGGAGGGCTCTGCTATT+TGG 0.302506 1_2:+70850343 Msa0089380:CDS
CAGTGTGCTGAGTGTGTTCA+TGG 0.316496 1_2:-70854891 None:intergenic
AGGCTGCACATGACAAAATA+AGG 0.334309 1_2:-70857026 None:intergenic
TGATGGAACCTCTCTTGATT+TGG 0.345284 1_2:-70847927 None:intergenic
CATCATTTCAATTCTACGTT+TGG 0.346369 1_2:+70846607 Msa0089380:CDS
CTGCGGGGAGGAGGACTATT+AGG 0.349990 1_2:-70847753 None:intergenic
CCTGGAGCAATGTGGCCAAC+TGG 0.354930 1_2:+70849771 Msa0089380:CDS
AAGAGATGAAGCTGAGGATA+TGG 0.355774 1_2:+70851213 Msa0089380:CDS
ATGCCTCCTGGTCCTCGTGC+AGG 0.359177 1_2:+70850301 Msa0089380:CDS
CCTACGTGCTCGTTTCATAT+CGG 0.363100 1_2:-70846751 None:intergenic
CCAACTGCCTTCAAAATTCA+AGG 0.363531 1_2:+70856912 Msa0089380:three_prime_UTR
GATTCCTTAGACTTTCCTTC+AGG 0.366560 1_2:-70851319 None:intergenic
CTTTAGGATTACCGAGCAAT+TGG 0.370954 1_2:-70846972 None:intergenic
CAATTCTACGTTTGGTTTCG+CGG 0.381688 1_2:+70846615 Msa0089380:CDS
CTTAGACTTTCCTTCAGGTT+TGG 0.384258 1_2:-70851314 None:intergenic
CTTGTTCCATTCCCAAGTCT+TGG 0.391108 1_2:-70850118 None:intergenic
GGGTGTCCTGGTCCACGTTC+GGG 0.392989 1_2:+70848119 Msa0089380:CDS
CAAACCTGAAGGAAAGTCTA+AGG 0.399665 1_2:+70851315 Msa0089380:CDS
TACAAATTTGTATTGGCAAA+TGG 0.410540 1_2:+70854864 Msa0089380:CDS
TTGTTCCATTCCCAAGTCTT+GGG 0.413147 1_2:-70850117 None:intergenic
TCATCTCTTGCAGTAGATAG+TGG 0.413970 1_2:-70851199 None:intergenic
AGAGATACACTATATATATA+TGG 0.419292 1_2:+70851514 Msa0089380:CDS
GGCCACATTGCTCCAGGCTT+AGG 0.421712 1_2:-70849765 None:intergenic
TTAAGCGTACAAATTTGTAT+TGG 0.421780 1_2:+70854857 Msa0089380:CDS
ATTCCCAAGTCTTGGGATCA+AGG 0.424658 1_2:-70850110 None:intergenic
ACAGCTAAAATACTCTAAAC+AGG 0.425533 1_2:-70856953 None:intergenic
TTTCCATGTGTGTTCATAAG+AGG 0.428365 1_2:+70850326 Msa0089380:CDS
AGGGTGTCCTGGTCCACGTT+CGG 0.432220 1_2:+70848118 Msa0089380:CDS
CCAGTTGGCCACATTGCTCC+AGG 0.435281 1_2:-70849771 None:intergenic
TTGCAAATCACATCATTCTT+CGG 0.439161 1_2:-70856631 None:intergenic
AACAGCTTGATGAGCACTGC+GGG 0.441731 1_2:-70847769 None:intergenic
GAAATTGATGATTCGAGGCC+AGG 0.444322 1_2:+70856605 Msa0089380:exon
GAAGGAAAGTCTAAGGAATC+TGG 0.444652 1_2:+70851322 Msa0089380:CDS
AATCTTTGATGCAATATTCT+GGG 0.445092 1_2:-70851266 None:intergenic
ATCTTGCAGAAACACGATAC+AGG 0.447457 1_2:+70856370 Msa0089380:CDS
AATGGCGTCAATATCATCTT+CGG 0.454860 1_2:-70846793 None:intergenic
TGCCTCCTGGTCCTCGTGCA+GGG 0.455126 1_2:+70850302 Msa0089380:CDS
TACGTTTGGTTTCGCGGCGG+CGG 0.456108 1_2:+70846621 Msa0089380:CDS
AATTTACCTTAAATTGATCA+AGG 0.459598 1_2:-70849581 None:intergenic
TGATGAGCACTGCGGGGAGG+AGG 0.462419 1_2:-70847762 None:intergenic
GGGAACAACTTAATTTAAAA+GGG 0.462637 1_2:+70848099 Msa0089380:CDS
ATGGCGTCAATATCATCTTC+GGG 0.469773 1_2:-70846792 None:intergenic
GTTTGGTTTCGCGGCGGCGG+CGG 0.471793 1_2:+70846624 Msa0089380:CDS
GAGCAATTGGAGCGAGGAGA+AGG 0.473197 1_2:-70846959 None:intergenic
CGATGTCCCGAACGTGGACC+AGG 0.482739 1_2:-70848125 None:intergenic
GTGCTCATCAAGCTGTTGCT+TGG 0.482807 1_2:+70847775 Msa0089380:CDS
ATCTCTTCCAACAGCCATGC+AGG 0.483354 1_2:-70851497 None:intergenic
CCCAGGCATCAGAATCTGAA+TGG 0.483703 1_2:+70852573 Msa0089380:intron
GCCTAGGCATTGGCAACCTA+TGG 0.484461 1_2:+70857045 Msa0089380:three_prime_UTR
CGATATGAAACGAGCACGTA+GGG 0.486723 1_2:+70846752 Msa0089380:CDS
ACCTTAGCAAACTTGATGAA+TGG 0.486761 1_2:+70851593 Msa0089380:CDS
TTGAAGGCAGTTGGAGAACA+TGG 0.488189 1_2:-70856903 None:intergenic
GTTTCGCGGCGGCGGCGGCA+AGG 0.489262 1_2:+70846629 Msa0089380:CDS
CTTAATTTAAAAGGGTGTCC+TGG 0.493693 1_2:+70848107 Msa0089380:CDS
AACTAGAAATTGATGATTCG+AGG 0.493956 1_2:+70856600 Msa0089380:exon
GTCATGTGCAGCCTAGGCAT+TGG 0.494329 1_2:+70857035 Msa0089380:three_prime_UTR
GCAGAAAGCTGAAGAGGCCG+AGG 0.495689 1_2:+70856540 Msa0089380:CDS
GCAGGAATTAATGCGTCCAC+AGG 0.496059 1_2:-70851479 None:intergenic
TTCTCCTCGCTCCAATTGCT+CGG 0.497070 1_2:+70846961 Msa0089380:CDS
CTGGAGCAATGTGGCCAACT+GGG 0.504537 1_2:+70849772 Msa0089380:CDS
CAGATTTAACCTTGTAGTGA+TGG 0.505260 1_2:-70847944 None:intergenic
TCCATTCATCAAGTTTGCTA+AGG 0.506196 1_2:-70851594 None:intergenic
AAATCTCCTCCTCAAAATCA+AGG 0.506315 1_2:+70856802 Msa0089380:three_prime_UTR
AATTAATAAATAAGAGAGAG+AGG 0.508610 1_2:+70846550 None:intergenic
GGTCCCTTGATCCCAAGACT+TGG 0.508965 1_2:+70850106 Msa0089380:CDS
GACAAGAATGCCTCTGAGAA+AGG 0.512410 1_2:+70850063 Msa0089380:CDS
TCTGCTATTTGGTGGTGTTG+TGG 0.514556 1_2:+70850354 Msa0089380:CDS
ATGACATAATTTCCAACGAC+CGG 0.517814 1_2:-70857133 None:intergenic
CATACTAGTTTCAGGCCCCT+CGG 0.518240 1_2:-70856557 None:intergenic
AGGAGGGCTCTGCTATTTGG+TGG 0.519472 1_2:+70850346 Msa0089380:CDS
TGAATGGAAGTGCATTATAC+CGG 0.521369 1_2:+70851609 Msa0089380:CDS
AAGAAGAGTGGGATGCCTCC+TGG 0.521741 1_2:+70850289 Msa0089380:CDS
GAAACTAGTATGAAGAAAAG+AGG 0.522197 1_2:+70856568 Msa0089380:CDS
AAATAAGAGAGAGAGGAGAG+TGG 0.523570 1_2:+70846557 Msa0089380:CDS
AGATGCTGTAGCTTTAATCA+AGG 0.526316 1_2:+70854504 Msa0089380:CDS
GAAAACCCTGCACGAGGACC+AGG 0.526655 1_2:-70850307 None:intergenic
CTCGATTAGAACTTCAGCAT+TGG 0.529284 1_2:-70856979 None:intergenic
CCATGTGTGTTCATAAGAGG+AGG 0.533379 1_2:+70850329 Msa0089380:CDS
GGTATAGTTAGTTACGAGAA+TGG 0.534288 1_2:-70846811 None:intergenic
CACATCATTCTTCGGCACCC+TGG 0.535553 1_2:-70856623 None:intergenic
CTGGTCCACGTTCGGGACAT+CGG 0.535631 1_2:+70848126 Msa0089380:CDS
TTCATCTATACCGCTATGAT+CGG 0.535858 1_2:+70857072 Msa0089380:three_prime_UTR
GGATAAATCAACAAAAGATA+AGG 0.537288 1_2:+70851023 Msa0089380:CDS
CATATATTAACCCCGGTCGT+TGG 0.537810 1_2:+70857121 Msa0089380:three_prime_UTR
TTCAGTTAGACACCAATCGC+TGG 0.538855 1_2:+70850771 Msa0089380:CDS
ATTAATTCCTGCATGGCTGT+TGG 0.539010 1_2:+70851490 Msa0089380:CDS
GAATTGTTCATTCAGATATG+TGG 0.539563 1_2:+70850085 Msa0089380:CDS
CAAGAAATAAAGCCTAAGCC+TGG 0.543576 1_2:+70849753 Msa0089380:CDS
GTACCCTCTGGAGTTAAGAA+AGG 0.548785 1_2:+70851002 Msa0089380:CDS
CCAGGCATCAGAATCTGAAT+GGG 0.549368 1_2:+70852574 Msa0089380:intron
CTTGGTAGGTTAAGAAGAGT+GGG 0.551093 1_2:+70850278 Msa0089380:intron
TCTTGGTAGGTTAAGAAGAG+TGG 0.551525 1_2:+70850277 Msa0089380:intron
GGAGAGCTAAACGAGTTTGT+CGG 0.552487 1_2:+70856844 Msa0089380:three_prime_UTR
TTTGTGAAATAGGTACCCTC+TGG 0.553079 1_2:+70850990 Msa0089380:intron
TTCCCAAGTCTTGGGATCAA+GGG 0.555002 1_2:-70850109 None:intergenic
AAAACAAAGAAAGTCGGCAA+AGG 0.555688 1_2:+70846696 Msa0089380:CDS
AACAGGTAGAACACGGGCAA+AGG 0.557608 1_2:-70856936 None:intergenic
ATATATATATGGTGGCATGA+TGG 0.561842 1_2:+70851525 Msa0089380:CDS
AAGTGTTTCATTGTCAGCAA+TGG 0.562261 1_2:-70851290 None:intergenic
TGACATAATTTCCAACGACC+GGG 0.562871 1_2:-70857132 None:intergenic
AGCTGAGCAGAAAGCTGAAG+AGG 0.567547 1_2:+70856534 Msa0089380:CDS
TATCCTTTCTTAACTCCAGA+GGG 0.568713 1_2:-70851005 None:intergenic
TTGGAGCGAGGAGAAGGAGC+GGG 0.570372 1_2:-70846953 None:intergenic
AATCTAAACTTACCAGCGAT+TGG 0.570438 1_2:-70850783 None:intergenic
TGATAGGAACTCCGCAAGGA+TGG 0.570747 1_2:+70856342 Msa0089380:intron
GTCCCTTGATCCCAAGACTT+GGG 0.570914 1_2:+70850107 Msa0089380:CDS
CAAGACTTGGGAATGGAACA+AGG 0.575951 1_2:+70850119 Msa0089380:CDS
AGTGTGCTGAGTGTGTTCAT+GGG 0.577454 1_2:-70854890 None:intergenic
TTTAGTGTGATTTACAGAGA+TGG 0.578150 1_2:+70856660 Msa0089380:three_prime_UTR
TTAAGAACTTTATGTACACT+TGG 0.578481 1_2:+70856713 Msa0089380:three_prime_UTR
TACTAACGATGTCGACAAGA+AGG 0.579404 1_2:+70851171 Msa0089380:CDS
GAGCAAATCAGAGCTAGCCT+TGG 0.579750 1_2:+70854571 Msa0089380:CDS
AAATTGATGATTCGAGGCCA+GGG 0.579797 1_2:+70856606 Msa0089380:exon
GGCATCAGAATCTGAATGGG+TGG 0.581599 1_2:+70852577 Msa0089380:intron
CATTCAAAATTCTTTGCCCG+AGG 0.582771 1_2:+70851357 Msa0089380:CDS
TACTCTAAACAGGTAGAACA+CGG 0.584283 1_2:-70856943 None:intergenic
TTGATCCCAAGACTTGGGAA+TGG 0.585173 1_2:+70850112 Msa0089380:CDS
TTATCCTTTCTTAACTCCAG+AGG 0.586418 1_2:-70851006 None:intergenic
TCTGAATGCATCAGATCAAG+TGG 0.588802 1_2:+70854480 Msa0089380:CDS
CCGATATGAAACGAGCACGT+AGG 0.589785 1_2:+70846751 Msa0089380:CDS
CATGAACACACTCAGCACAC+TGG 0.589985 1_2:+70854892 Msa0089380:CDS
TGTAGCTTTAATCAAGGGAG+GGG 0.595643 1_2:+70854510 Msa0089380:CDS
CTGTAGCTTTAATCAAGGGA+GGG 0.597224 1_2:+70854509 Msa0089380:CDS
CAGAAAGCTGAAGAGGCCGA+GGG 0.598840 1_2:+70856541 Msa0089380:CDS
TCTTGCAGAAACACGATACA+GGG 0.600892 1_2:+70856371 Msa0089380:CDS
AGATTCACAGAGAACACCAT+TGG 0.603261 1_2:+70854600 Msa0089380:CDS
GATGCTGTAGCTTTAATCAA+GGG 0.604486 1_2:+70854505 Msa0089380:CDS
TCCACGTTCGGGACATCGGA+TGG 0.605166 1_2:+70848130 Msa0089380:CDS
ATGATACACTTAGAGAAGTG+AGG 0.607586 1_2:+70848698 Msa0089380:CDS
CTATTCAAAAGAAGTTTCAT+CGG 0.608107 1_2:+70850041 Msa0089380:CDS
ACCATAGGTTGCCAATGCCT+AGG 0.609538 1_2:-70857046 None:intergenic
TGGACGCATTAATTCCTGCA+TGG 0.609998 1_2:+70851483 Msa0089380:CDS
AGAGAGGTTCCATCACTACA+AGG 0.611220 1_2:+70847935 Msa0089380:CDS
GGGAAGAAAACAAAGAAAGT+CGG 0.611856 1_2:+70846690 Msa0089380:CDS
TGAAAACCACTACGCCCAGT+TGG 0.612932 1_2:-70849786 None:intergenic
ACGCTTAAAGAAATCTCTCA+AGG 0.614690 1_2:-70854842 None:intergenic
TCTGTGAATCTGACAAGCCA+AGG 0.615736 1_2:-70854588 None:intergenic
ATTGGAGCGAGGAGAAGGAG+CGG 0.617741 1_2:-70846954 None:intergenic
GGTATAGATGAAGCAACCAT+AGG 0.618429 1_2:-70857061 None:intergenic
ATCTGCGTAGGAAAGAAAGA+AGG 0.619000 1_2:+70854539 Msa0089380:CDS
CATGTGTGTTCATAAGAGGA+GGG 0.619549 1_2:+70850330 Msa0089380:CDS
TGAATGGGTGGAAGTTTCAG+AGG 0.621213 1_2:+70852589 Msa0089380:CDS
ATGTGGCCAACTGGGCGTAG+TGG 0.621719 1_2:+70849780 Msa0089380:CDS
CCTCCTCTTATGAACACACA+TGG 0.626591 1_2:-70850329 None:intergenic
GTTGTGGATATAGAAGTTGA+AGG 0.627219 1_2:+70850370 Msa0089380:CDS
ACCATCCGATGTCCCGAACG+TGG 0.627885 1_2:-70848131 None:intergenic
TACTGCAAGAGATGAAGCTG+AGG 0.628207 1_2:+70851207 Msa0089380:CDS
GAAACACTTACCAAACCTGA+AGG 0.628495 1_2:+70851304 Msa0089380:CDS
TGGACCTGAAAACTAATCAG+TGG 0.633743 1_2:+70848078 Msa0089380:CDS
GCTGTAGCTTTAATCAAGGG+AGG 0.634285 1_2:+70854508 Msa0089380:CDS
GGACCTGAAAACTAATCAGT+GGG 0.635849 1_2:+70848079 Msa0089380:CDS
TTACATCTCCAAATCAAGAG+AGG 0.638987 1_2:+70847919 Msa0089380:CDS
CAGGAATTAATGCGTCCACA+GGG 0.639638 1_2:-70851478 None:intergenic
GACATAATTTCCAACGACCG+GGG 0.641899 1_2:-70857131 None:intergenic
CACATGGAAAACCCTGCACG+AGG 0.650088 1_2:-70850313 None:intergenic
ATGATGTTGAGAAGCTGGAG+TGG 0.650953 1_2:+70847715 Msa0089380:intron
AAGTGTTCATATATTAACCC+CGG 0.651198 1_2:+70857114 Msa0089380:three_prime_UTR
GCTTGATGAGCACTGCGGGG+AGG 0.652275 1_2:-70847765 None:intergenic
TAATAGTGATGGTACAAGTG+AGG 0.660212 1_2:+70852655 Msa0089380:CDS
GATACACTATATATATATGG+TGG 0.661154 1_2:+70851517 Msa0089380:CDS
AGAAAGCTGAAGAGGCCGAG+GGG 0.664566 1_2:+70856542 Msa0089380:CDS
GAGGGGTAAAGAATCTGCGT+AGG 0.665128 1_2:+70854527 Msa0089380:CDS
CTGAATGCATCAGATCAAGT+GGG 0.666302 1_2:+70854481 Msa0089380:CDS
GATGATGAATCTAATAGTGA+TGG 0.667183 1_2:+70852644 Msa0089380:CDS
GTAGGAAAGAAAGAAGGTCA+CGG 0.670544 1_2:+70854545 Msa0089380:CDS
AACCCTGCACGAGGACCAGG+AGG 0.671017 1_2:-70850304 None:intergenic
ATTACCGAGCAATTGGAGCG+AGG 0.672517 1_2:-70846965 None:intergenic
ATGAACAATTCCTTTCTCAG+AGG 0.672557 1_2:-70850073 None:intergenic
CAACAGCTTGATGAGCACTG+CGG 0.679746 1_2:-70847770 None:intergenic
TTCTAGGCAGTGAAACCCTG+TGG 0.688866 1_2:+70851463 Msa0089380:intron
ACTCTAAACAGGTAGAACAC+GGG 0.691284 1_2:-70856942 None:intergenic
TGGGTGATAGGAACTCCGCA+AGG 0.694460 1_2:+70856338 Msa0089380:intron
GCTAAAACCTATTCTTGACG+AGG 0.698872 1_2:+70856395 Msa0089380:CDS
CAAGATCAAAACCATCCTTG+CGG 0.699328 1_2:-70856353 None:intergenic
ACAGCTTGATGAGCACTGCG+GGG 0.699986 1_2:-70847768 None:intergenic
TTCTACGTTTGGTTTCGCGG+CGG 0.710415 1_2:+70846618 Msa0089380:CDS
AGCCTAAGCCTGGAGCAATG+TGG 0.720894 1_2:+70849763 Msa0089380:CDS
GTTGAAAGAGCCGATCATAG+CGG 0.743055 1_2:-70857082 None:intergenic
CGGCGGCAAGGAATTCACAG+CGG 0.761082 1_2:+70846641 Msa0089380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATATTAAAACTATTTT+TGG - chr1_2:70847456-70847475 None:intergenic 10.0%
!!! AAGAATTATGTTTATATTTT+TGG + chr1_2:70847798-70847817 Msa0089380:CDS 10.0%
!! AACTATTAAATAATAACATA+CGG - chr1_2:70850227-70850246 None:intergenic 10.0%
!! AAAATAATCATGAAAATAAA+AGG - chr1_2:70850399-70850418 None:intergenic 10.0%
!! AAAAAAAGAAAGAAAAAAAT+TGG - chr1_2:70851079-70851098 None:intergenic 10.0%
!! AAAATAGTAAATCAATATTA+TGG + chr1_2:70852027-70852046 Msa0089380:intron 10.0%
!! ATAAATAATAATATGAATTG+TGG + chr1_2:70852391-70852410 Msa0089380:intron 10.0%
!! ATTGTAATATTAATAAAAGT+TGG - chr1_2:70855291-70855310 None:intergenic 10.0%
!!! ATATTTTTGGTAATTTGATT+TGG + chr1_2:70847811-70847830 Msa0089380:intron 15.0%
!! AAGAAATTATTATAACTGAA+CGG + chr1_2:70848595-70848614 Msa0089380:intron 15.0%
!!! TAAATAACTTTAATTTCTGT+AGG - chr1_2:70849046-70849065 None:intergenic 15.0%
!! TTCAATCATTATGATTAATT+AGG + chr1_2:70849934-70849953 Msa0089380:intron 15.0%
!! TCAATCATTATGATTAATTA+GGG + chr1_2:70849935-70849954 Msa0089380:intron 15.0%
!! TACACTTATAATTAAATGAA+CGG + chr1_2:70850446-70850465 Msa0089380:intron 15.0%
!! ATTGTTTGTAAACATTAAAA+AGG - chr1_2:70850502-70850521 None:intergenic 15.0%
!! ATTGTTTGTAAACATTAAAA+AGG - chr1_2:70850502-70850521 None:intergenic 15.0%
!! AATTAATGAAAAAATTACGA+AGG - chr1_2:70850882-70850901 None:intergenic 15.0%
!! TTATTTATGTTAGTTGTATT+TGG + chr1_2:70851902-70851921 Msa0089380:intron 15.0%
!! TTATTATAAAAAAACCTATC+TGG - chr1_2:70853150-70853169 None:intergenic 15.0%
!!! GATAGGTTTTTTTATAATAA+AGG + chr1_2:70853150-70853169 Msa0089380:intron 15.0%
!!! AAATGAGTTGAAATAATAAA+AGG - chr1_2:70854046-70854065 None:intergenic 15.0%
!!! TTTTATTATTTCAACTCATT+TGG + chr1_2:70854045-70854064 Msa0089380:intron 15.0%
!! ATTAAGTAAAATATGATATG+CGG - chr1_2:70855028-70855047 None:intergenic 15.0%
!!! ATATTTTACTTAATGTATTC+TGG + chr1_2:70855034-70855053 Msa0089380:intron 15.0%
!!! TATTTTACTTAATGTATTCT+GGG + chr1_2:70855035-70855054 Msa0089380:intron 15.0%
!!! TGTAGTTATAAATAGTTTTT+AGG - chr1_2:70856461-70856480 None:intergenic 15.0%
!! AAACCAAACATAAAAAAATC+TGG + chr1_2:70847564-70847583 Msa0089380:intron 20.0%
!!! GTTTTTTTTTAATGTGCTTT+AGG + chr1_2:70847888-70847907 Msa0089380:intron 20.0%
!!! TTGTTGTTTAAATTCTGATA+TGG - chr1_2:70848575-70848594 None:intergenic 20.0%
!! AAATACAACTACAAACTATA+AGG - chr1_2:70849008-70849027 None:intergenic 20.0%
!!! TTATAGTTTGTAGTTGTATT+TGG + chr1_2:70849007-70849026 Msa0089380:intron 20.0%
!! TAGGAGAAATTAAATTTATC+AGG - chr1_2:70849230-70849249 None:intergenic 20.0%
!! AGAACAGAAAGAAATAAAAT+CGG - chr1_2:70849342-70849361 None:intergenic 20.0%
!! AATTTACCTTAAATTGATCA+AGG - chr1_2:70849584-70849603 None:intergenic 20.0%
!! AGTAGTACATTAACATAATT+AGG - chr1_2:70849629-70849648 None:intergenic 20.0%
!!! AAAAATTAGCTTCATATAAG+GGG - chr1_2:70849851-70849870 None:intergenic 20.0%
!!! CAAAAATTAGCTTCATATAA+GGG - chr1_2:70849852-70849871 None:intergenic 20.0%
!!! ACAAAAATTAGCTTCATATA+AGG - chr1_2:70849853-70849872 None:intergenic 20.0%
!! ACACTTATAATTAAATGAAC+GGG + chr1_2:70850447-70850466 Msa0089380:intron 20.0%
!! TAAATGGAAACTTAAGAAAA+TGG - chr1_2:70850824-70850843 None:intergenic 20.0%
!! GGAAGAATTTATTACATAAA+TGG - chr1_2:70850840-70850859 None:intergenic 20.0%
!! AGAGATACACTATATATATA+TGG + chr1_2:70851514-70851533 Msa0089380:CDS 20.0%
!!! ATTTAACATCACAGTTTTAA+AGG + chr1_2:70852152-70852171 Msa0089380:intron 20.0%
!! ACTGAAGTTCTTTAAATTAA+GGG + chr1_2:70852285-70852304 Msa0089380:intron 20.0%
!! TGTTACATAAATGTAAAACA+GGG - chr1_2:70852764-70852783 None:intergenic 20.0%
!! AATAAAAGAAAATTCCAGAT+AGG + chr1_2:70853133-70853152 Msa0089380:intron 20.0%
!! AGAATCAAGATAAAAGATAA+GGG - chr1_2:70853347-70853366 None:intergenic 20.0%
!! TAGAATCAAGATAAAAGATA+AGG - chr1_2:70853348-70853367 None:intergenic 20.0%
!! TTATGAAGTGAATAAAAAGT+TGG + chr1_2:70853400-70853419 Msa0089380:intron 20.0%
!! ACAATCATTAGAAAGAAAAT+TGG + chr1_2:70853679-70853698 Msa0089380:intron 20.0%
!! CAATCATTAGAAAGAAAATT+GGG + chr1_2:70853680-70853699 Msa0089380:intron 20.0%
!! AATCATTAGAAAGAAAATTG+GGG + chr1_2:70853681-70853700 Msa0089380:intron 20.0%
!! CTAAAACTATTCTAATGATT+AGG - chr1_2:70853817-70853836 None:intergenic 20.0%
!!! AATCATTAGAATAGTTTTAG+AGG + chr1_2:70853817-70853836 Msa0089380:intron 20.0%
!!! TTTTTGAAATTCTTCCTTTT+AGG + chr1_2:70854010-70854029 Msa0089380:intron 20.0%
!! AAACTAAATGCTTAGAATAT+CGG - chr1_2:70854103-70854122 None:intergenic 20.0%
!!! TTCAGTCTATAATATTTTGA+TGG + chr1_2:70854210-70854229 Msa0089380:intron 20.0%
!!! TCAGTCTATAATATTTTGAT+GGG + chr1_2:70854211-70854230 Msa0089380:intron 20.0%
!! AAATATTGATAAACTACCAA+TGG - chr1_2:70854619-70854638 None:intergenic 20.0%
!!! ATTTTACTTAATGTATTCTG+GGG + chr1_2:70855036-70855055 Msa0089380:intron 20.0%
!!! CATTTTGTAATTTTAGAACA+AGG - chr1_2:70855119-70855138 None:intergenic 20.0%
!!! GTTCTAAAATTACAAAATGT+TGG + chr1_2:70855120-70855139 Msa0089380:intron 20.0%
!!! AATATAAATAACAGTTCTGA+AGG + chr1_2:70855397-70855416 Msa0089380:intron 20.0%
!! ATAGATTATTGTACACTTAA+GGG + chr1_2:70855504-70855523 Msa0089380:intron 20.0%
!!! TTAGTCTCTTTTTTTACATA+AGG - chr1_2:70855698-70855717 None:intergenic 20.0%
!! AAAATTGTCAAAGTTTAAGA+TGG + chr1_2:70856070-70856089 Msa0089380:intron 20.0%
!! AACAATCTACAAATCAAATA+GGG - chr1_2:70856111-70856130 None:intergenic 20.0%
!! AAACAATCTACAAATCAAAT+AGG - chr1_2:70856112-70856131 None:intergenic 20.0%
!!! GTAACAACTTTATTTCAAAT+TGG - chr1_2:70856214-70856233 None:intergenic 20.0%
! AAGAAGAAGAAGAAGAAAAT+GGG + chr1_2:70846669-70846688 Msa0089380:CDS 25.0%
!! AAATTGAAAGAAGAAGCATA+AGG - chr1_2:70846835-70846854 None:intergenic 25.0%
! CTGTGTGATAAACTATTATT+AGG - chr1_2:70846876-70846895 None:intergenic 25.0%
! ACAGTTGAATATTCAAAAAG+AGG + chr1_2:70846892-70846911 Msa0089380:intron 25.0%
!! AGAAACAAAGTGTTAACTAA+CGG - chr1_2:70846998-70847017 None:intergenic 25.0%
!!! GTAATTGATTTTGAGTGAAT+CGG + chr1_2:70847186-70847205 Msa0089380:intron 25.0%
! TTTGACTAAAATTGTGTTGA+AGG + chr1_2:70847210-70847229 Msa0089380:intron 25.0%
!!! TGACCAGATTTTTTTATGTT+TGG - chr1_2:70847570-70847589 None:intergenic 25.0%
!!! TTTTTTTAATGTGCTTTAGG+TGG + chr1_2:70847891-70847910 Msa0089380:intron 25.0%
! TGGGAACAACTTAATTTAAA+AGG + chr1_2:70848098-70848117 Msa0089380:CDS 25.0%
! GGGAACAACTTAATTTAAAA+GGG + chr1_2:70848099-70848118 Msa0089380:CDS 25.0%
! TTGACTTAAGATGTATGAAT+CGG - chr1_2:70848215-70848234 None:intergenic 25.0%
! TTCATACATCTTAAGTCAAA+CGG + chr1_2:70848216-70848235 Msa0089380:intron 25.0%
! AAGAAAATAACCAAGATAGA+GGG - chr1_2:70848394-70848413 None:intergenic 25.0%
!!! TGGTGATGTTTTTAACTTTT+GGG - chr1_2:70848431-70848450 None:intergenic 25.0%
!! TAAATTCTGATATGGCTTTA+CGG - chr1_2:70848567-70848586 None:intergenic 25.0%
! TATAATACCTGCAAATGATA+AGG - chr1_2:70848646-70848665 None:intergenic 25.0%
!! AAGCACAAGATTATTCTTTT+TGG + chr1_2:70848667-70848686 Msa0089380:CDS 25.0%
!!! CAACATTGATTTCTAAGTTT+TGG + chr1_2:70848872-70848891 Msa0089380:intron 25.0%
!!! ATTTCTAAGTTTTGGTTTTG+AGG + chr1_2:70848880-70848899 Msa0089380:intron 25.0%
!!! TTTCTAAGTTTTGGTTTTGA+GGG + chr1_2:70848881-70848900 Msa0089380:intron 25.0%
! CAATCACACACAAAAAAATA+TGG - chr1_2:70848934-70848953 None:intergenic 25.0%
!!! CAATATGAGATTTTAAGTTG+CGG + chr1_2:70849092-70849111 Msa0089380:intron 25.0%
! AAATGATTAAAAGTAGTGAG+AGG + chr1_2:70849165-70849184 Msa0089380:intron 25.0%
! AATGATTAAAAGTAGTGAGA+GGG + chr1_2:70849166-70849185 Msa0089380:intron 25.0%
! GAAATAAAATCGGATTGAAA+AGG - chr1_2:70849332-70849351 None:intergenic 25.0%
! ATCTAGTTGCAAAATCTATA+CGG - chr1_2:70849418-70849437 None:intergenic 25.0%
! AATTAAGAAGTGACATAGAA+AGG - chr1_2:70849524-70849543 None:intergenic 25.0%
!! TTTCTATGTCACTTCTTAAT+TGG + chr1_2:70849523-70849542 Msa0089380:intron 25.0%
! ATTTGACCTTGATCAATTTA+AGG + chr1_2:70849575-70849594 Msa0089380:CDS 25.0%
! ATCATTATGATTAATTAGGG+TGG + chr1_2:70849938-70849957 Msa0089380:intron 25.0%
!! ACATTGCAGATTTTCTTATA+TGG + chr1_2:70850015-70850034 Msa0089380:intron 25.0%
! CTATTCAAAAGAAGTTTCAT+CGG + chr1_2:70850041-70850060 Msa0089380:CDS 25.0%
! ATTTGTATATTCCTCTTCTT+AGG + chr1_2:70850170-70850189 Msa0089380:intron 25.0%
!! ATAACATACGGTATTTTTCT+GGG - chr1_2:70850215-70850234 None:intergenic 25.0%
!! AATAACATACGGTATTTTTC+TGG - chr1_2:70850216-70850235 None:intergenic 25.0%
! AAAAGAATTTAATCAGACTG+CGG - chr1_2:70850638-70850657 None:intergenic 25.0%
!! CAGTCTGATTAAATTCTTTT+CGG + chr1_2:70850638-70850657 Msa0089380:intron 25.0%
! GGATAAATCAACAAAAGATA+AGG + chr1_2:70851023-70851042 Msa0089380:CDS 25.0%
!! ATCGTTAGTACAATTTTGTT+CGG - chr1_2:70851161-70851180 None:intergenic 25.0%
! AATCTTTGATGCAATATTCT+GGG - chr1_2:70851269-70851288 None:intergenic 25.0%
! TAATCTTTGATGCAATATTC+TGG - chr1_2:70851270-70851289 None:intergenic 25.0%
! GATACACTATATATATATGG+TGG + chr1_2:70851517-70851536 Msa0089380:CDS 25.0%
! TCATCAATTGCAATTAGTAA+TGG - chr1_2:70851681-70851700 None:intergenic 25.0%
!! ATACATAAGTTTTCTGTTCT+TGG + chr1_2:70851762-70851781 Msa0089380:intron 25.0%
! GCTAGAGTTATAAACTTAAT+GGG - chr1_2:70851928-70851947 None:intergenic 25.0%
! AGCTAGAGTTATAAACTTAA+TGG - chr1_2:70851929-70851948 None:intergenic 25.0%
! GTGATGTTAAATTCGAAAAA+AGG - chr1_2:70852144-70852163 None:intergenic 25.0%
!! GTTTTATGTTTGTCTTGATA+TGG + chr1_2:70852174-70852193 Msa0089380:intron 25.0%
! TATTCCTTAAAGAGATACTT+TGG + chr1_2:70852246-70852265 Msa0089380:intron 25.0%
! GACTGAAGTTCTTTAAATTA+AGG + chr1_2:70852284-70852303 Msa0089380:intron 25.0%
!! TAATGAGTAAATCAGCATTT+TGG - chr1_2:70852372-70852391 None:intergenic 25.0%
!! CTTCTTTTACATTAGATTGT+TGG + chr1_2:70852419-70852438 Msa0089380:intron 25.0%
!!! TAGTTCGCTCATTTTTATTT+TGG - chr1_2:70852736-70852755 None:intergenic 25.0%
! TTACATAAATGTAAAACAGG+GGG - chr1_2:70852762-70852781 None:intergenic 25.0%
! GTTACATAAATGTAAAACAG+GGG - chr1_2:70852763-70852782 None:intergenic 25.0%
! CTGTTACATAAATGTAAAAC+AGG - chr1_2:70852765-70852784 None:intergenic 25.0%
! TTCCTTTCCTATAGAAAAAA+GGG - chr1_2:70852806-70852825 None:intergenic 25.0%
! TTTCCTTTCCTATAGAAAAA+AGG - chr1_2:70852807-70852826 None:intergenic 25.0%
!!! CATTTCAGGTTCAAATATTT+GGG + chr1_2:70852923-70852942 Msa0089380:intron 25.0%
!! TTAACAAGAGATTTTTCTCA+TGG - chr1_2:70853064-70853083 None:intergenic 25.0%
! TAAGAGAGAAAAACATAAGA+TGG + chr1_2:70853261-70853280 Msa0089380:intron 25.0%
! ATAACATAGTGATGCAAATT+GGG + chr1_2:70853436-70853455 Msa0089380:intron 25.0%
!! ATTCTATGGAATTGCAATTT+TGG + chr1_2:70853621-70853640 Msa0089380:intron 25.0%
!! TTCTATGGAATTGCAATTTT+GGG + chr1_2:70853622-70853641 Msa0089380:intron 25.0%
!!! CTTTTCCATCATTCTAAAAT+GGG - chr1_2:70853711-70853730 None:intergenic 25.0%
!!! ACTTTTCCATCATTCTAAAA+TGG - chr1_2:70853712-70853731 None:intergenic 25.0%
!!! TAGTTTTAGAGGTAATGTAA+TGG + chr1_2:70853828-70853847 Msa0089380:intron 25.0%
! ATGCCATTATAATCAAGAAA+GGG + chr1_2:70853958-70853977 Msa0089380:intron 25.0%
! AACTAAATGCTTAGAATATC+GGG - chr1_2:70854102-70854121 None:intergenic 25.0%
!!! ACAATTGATTTTGCCATATA+AGG + chr1_2:70854172-70854191 Msa0089380:intron 25.0%
! ATTAAGAATTCGTCCTTATA+TGG - chr1_2:70854188-70854207 None:intergenic 25.0%
! TAATAGCTATTGCAAGTTTA+AGG - chr1_2:70854341-70854360 None:intergenic 25.0%
! TTAAACTTGCAATAGCTATT+AGG + chr1_2:70854340-70854359 Msa0089380:intron 25.0%
! GACTTTCTGCATTATTTATT+TGG + chr1_2:70854435-70854454 Msa0089380:intron 25.0%
!!! ATTTATTTGGCTTTACGTTT+TGG + chr1_2:70854448-70854467 Msa0089380:intron 25.0%
! AAAAATATTGAAGCTCAAAG+AGG - chr1_2:70854770-70854789 None:intergenic 25.0%
! TTAAGCGTACAAATTTGTAT+TGG + chr1_2:70854857-70854876 Msa0089380:CDS 25.0%
!! TACAAATTTGTATTGGCAAA+TGG + chr1_2:70854864-70854883 Msa0089380:CDS 25.0%
!! ATTTTACCCATAAAGCTATA+CGG + chr1_2:70854958-70854977 Msa0089380:intron 25.0%
! TAAAAGAAATATAGGAAAGG+CGG - chr1_2:70855005-70855024 None:intergenic 25.0%
! ATATGCGGTAAAAGAAATAT+AGG - chr1_2:70855013-70855032 None:intergenic 25.0%
!! TTTTACTTAATGTATTCTGG+GGG + chr1_2:70855037-70855056 Msa0089380:intron 25.0%
! GATAGATTATTGTACACTTA+AGG + chr1_2:70855503-70855522 Msa0089380:intron 25.0%
!! ACAATGTTGTTTATGTAAAG+AGG + chr1_2:70855552-70855571 Msa0089380:intron 25.0%
! AGTTGAAATTAACACACAAA+CGG - chr1_2:70855970-70855989 None:intergenic 25.0%
! GTGTGTTAATTTCAACTAAA+AGG + chr1_2:70855973-70855992 Msa0089380:intron 25.0%
!!! AGGTTTTAAATTAAAGTCCA+TGG + chr1_2:70856036-70856055 Msa0089380:intron 25.0%
! TTAAGAACTTTATGTACACT+TGG + chr1_2:70856713-70856732 Msa0089380:three_prime_UTR 25.0%
! GGATAGAATCCATATAAAAA+TGG + chr1_2:70856823-70856842 Msa0089380:three_prime_UTR 25.0%
!!! TTTAGCTCTCCATTTTTATA+TGG - chr1_2:70856835-70856854 None:intergenic 25.0%
CATCATTTCAATTCTACGTT+TGG + chr1_2:70846607-70846626 Msa0089380:CDS 30.0%
GAAGAAGAAGAAGAAGAAAA+TGG + chr1_2:70846668-70846687 Msa0089380:CDS 30.0%
AGAAGAAGAAGAAGAAAATG+GGG + chr1_2:70846670-70846689 Msa0089380:CDS 30.0%
AGTCTCTTTCAAAGGATTAA+CGG - chr1_2:70847076-70847095 None:intergenic 30.0%
! GCTTCAAGTAGAATCAATTT+TGG + chr1_2:70847338-70847357 Msa0089380:intron 30.0%
! TCAAGTAGAATCAATTTTGG+AGG + chr1_2:70847341-70847360 Msa0089380:intron 30.0%
!! ATTTTGGAGGCAAAGTTAAT+TGG + chr1_2:70847354-70847373 Msa0089380:intron 30.0%
!! TATTTGTAGCTTTCAAGTTG+AGG - chr1_2:70847511-70847530 None:intergenic 30.0%
TGCATATATTCAAAACCTGA+TGG - chr1_2:70847666-70847685 None:intergenic 30.0%
! GTTTTGTCTTGATATTTGTG+TGG + chr1_2:70847833-70847852 Msa0089380:intron 30.0%
TTGATATTTGTGTGGATTTG+TGG + chr1_2:70847841-70847860 Msa0089380:intron 30.0%
AAAATGTGGTTCACTTTACT+GGG + chr1_2:70847998-70848017 Msa0089380:intron 30.0%
!! TTTTGAATTTTGATCGCTGT+AGG + chr1_2:70848043-70848062 Msa0089380:intron 30.0%
!! AAAGTTGGTAACTAACTACA+TGG - chr1_2:70848179-70848198 None:intergenic 30.0%
TCATACATCTTAAGTCAAAC+GGG + chr1_2:70848217-70848236 Msa0089380:intron 30.0%
ATGTCGTAAAGAATAATCTG+AGG - chr1_2:70848325-70848344 None:intergenic 30.0%
GAAGAAAATAACCAAGATAG+AGG - chr1_2:70848395-70848414 None:intergenic 30.0%
!!! GTGGTGATGTTTTTAACTTT+TGG - chr1_2:70848432-70848451 None:intergenic 30.0%
!! TAAGCTTTTGTGTTTCTAAC+AGG - chr1_2:70848484-70848503 None:intergenic 30.0%
CTAATATCCTTATCATTTGC+AGG + chr1_2:70848636-70848655 Msa0089380:intron 30.0%
! CACAAGATTATTCTTTTTGG+TGG + chr1_2:70848670-70848689 Msa0089380:CDS 30.0%
!! ATCTGATGAAAAACTTGCTA+TGG + chr1_2:70848775-70848794 Msa0089380:intron 30.0%
! TTTTCTTTGTGCATCTTCTT+TGG + chr1_2:70848818-70848837 Msa0089380:intron 30.0%
GATTGAAAATAATCCAACGA+GGG - chr1_2:70848986-70849005 None:intergenic 30.0%
AGTTTGTAGTTGTATTTGGA+TGG + chr1_2:70849011-70849030 Msa0089380:intron 30.0%
! ATTTCTTGCAATAACGGAAT+AGG - chr1_2:70849249-70849268 None:intergenic 30.0%
TTTCACACATGAGAGTTAAA+TGG + chr1_2:70849441-70849460 Msa0089380:intron 30.0%
TCTAGTTGTATGTGGTTTAA+AGG - chr1_2:70849470-70849489 None:intergenic 30.0%
TACAACTAGAGACTGATTAT+CGG + chr1_2:70849480-70849499 Msa0089380:intron 30.0%
! GTATTTTACTCACATCATCT+TGG - chr1_2:70849824-70849843 None:intergenic 30.0%
! TTGCAGATTTTCTTATATGG+TGG + chr1_2:70850018-70850037 Msa0089380:intron 30.0%
GAATTGTTCATTCAGATATG+TGG + chr1_2:70850085-70850104 Msa0089380:CDS 30.0%
! TAACATACGGTATTTTTCTG+GGG - chr1_2:70850214-70850233 None:intergenic 30.0%
ATAAGTGTATGCAGATTAGA+TGG - chr1_2:70850435-70850454 None:intergenic 30.0%
GAAAGAATTTAATCAGACTG+CGG - chr1_2:70850534-70850553 None:intergenic 30.0%
GCAGTCTGATTAAATTCTTT+CGG + chr1_2:70850533-70850552 Msa0089380:intron 30.0%
TTTCGGAGGAATTAAATGAA+TGG + chr1_2:70850550-70850569 Msa0089380:intron 30.0%
TTCGGAGGAATTAAATGAAT+GGG + chr1_2:70850551-70850570 Msa0089380:intron 30.0%
! TCTGATTAAATTCTTTTCGG+AGG + chr1_2:70850641-70850660 Msa0089380:intron 30.0%
!! ATTTGTTTATGCTTGCTGTA+TGG + chr1_2:70850674-70850693 Msa0089380:intron 30.0%
TAATTGCACTTAAATCATGC+AGG + chr1_2:70850707-70850726 Msa0089380:intron 30.0%
TTGTTCTTGAATGAGCTTTA+TGG + chr1_2:70850746-70850765 Msa0089380:CDS 30.0%
AGTTGTGCTCTCATATTAAA+CGG + chr1_2:70850940-70850959 Msa0089380:intron 30.0%
! ATTGATGCTGTTTGTGAAAT+AGG + chr1_2:70850980-70850999 Msa0089380:intron 30.0%
TGAATTTCTCCAAACTTTCT+AGG + chr1_2:70851447-70851466 Msa0089380:intron 30.0%
ATATATATATGGTGGCATGA+TGG + chr1_2:70851525-70851544 Msa0089380:CDS 30.0%
GTAGTAGTAGTATATCATAG+AGG + chr1_2:70851851-70851870 Msa0089380:intron 30.0%
TTATGGTTCCTGAAATTGTA+AGG + chr1_2:70852044-70852063 Msa0089380:intron 30.0%
TATGGTTCCTGAAATTGTAA+GGG + chr1_2:70852045-70852064 Msa0089380:intron 30.0%
! TCTACCAAAGTATCTCTTTA+AGG - chr1_2:70852253-70852272 None:intergenic 30.0%
TAGTCAAAATTGTAAGAGTC+AGG - chr1_2:70852349-70852368 None:intergenic 30.0%
GATGATGAATCTAATAGTGA+TGG + chr1_2:70852644-70852663 Msa0089380:CDS 30.0%
!!! TGGAGTTTTGAGATTAGAAT+GGG - chr1_2:70852716-70852735 None:intergenic 30.0%
!!! TTGGAGTTTTGAGATTAGAA+TGG - chr1_2:70852717-70852736 None:intergenic 30.0%
TCCTTTCCTATAGAAAAAAG+GGG - chr1_2:70852805-70852824 None:intergenic 30.0%
! AACAAATCATTCATTTGGTG+TGG + chr1_2:70852897-70852916 Msa0089380:intron 30.0%
CCAAATATTTGAACCTGAAA+TGG - chr1_2:70852925-70852944 None:intergenic 30.0%
!! CCATTTCAGGTTCAAATATT+TGG + chr1_2:70852922-70852941 Msa0089380:intron 30.0%
!! AGGTTCGTTTTTAGAGAAAA+GGG - chr1_2:70852996-70853015 None:intergenic 30.0%
TGTTGTAACCACAAAATACA+AGG + chr1_2:70853177-70853196 Msa0089380:intron 30.0%
TAACCACAAAATACAAGGAA+AGG + chr1_2:70853182-70853201 Msa0089380:intron 30.0%
! TTTCCTTTCCTTGTATTTTG+TGG - chr1_2:70853188-70853207 None:intergenic 30.0%
TAAGACTATAACACAACAGA+TGG - chr1_2:70853231-70853250 None:intergenic 30.0%
! TCTGTTGTGTTATAGTCTTA+TGG + chr1_2:70853231-70853250 Msa0089380:intron 30.0%
TAATGAGATTATGAGTTCTG+AGG + chr1_2:70853299-70853318 Msa0089380:intron 30.0%
! AATGAGATTATGAGTTCTGA+GGG + chr1_2:70853300-70853319 Msa0089380:intron 30.0%
CATAACATAGTGATGCAAAT+TGG + chr1_2:70853435-70853454 Msa0089380:intron 30.0%
TAACATAGTGATGCAAATTG+GGG + chr1_2:70853437-70853456 Msa0089380:intron 30.0%
! GTCGATGGTATTTAAAACAT+CGG - chr1_2:70853482-70853501 None:intergenic 30.0%
AATCGGACTACAATATTCTA+TGG + chr1_2:70853607-70853626 Msa0089380:intron 30.0%
CATGCCATTATAATCAAGAA+AGG + chr1_2:70853957-70853976 Msa0089380:intron 30.0%
TCTCCCTTTCTTGATTATAA+TGG - chr1_2:70853964-70853983 None:intergenic 30.0%
TGTACAAAGGGAATACAAAA+GGG + chr1_2:70854135-70854154 Msa0089380:intron 30.0%
CTATCATGGATCTTAAACAT+AGG - chr1_2:70854287-70854306 None:intergenic 30.0%
TGATTATAGATTGAAGCTAG+TGG + chr1_2:70854660-70854679 Msa0089380:intron 30.0%
! AATTGTCTTGTTGCATGTAA+AGG + chr1_2:70854810-70854829 Msa0089380:intron 30.0%
CGGTAAAAGAAATATAGGAA+AGG - chr1_2:70855008-70855027 None:intergenic 30.0%
!!! GTAATTTTAGAACAAGGACT+TGG - chr1_2:70855113-70855132 None:intergenic 30.0%
TGCATGCAAGTAATATTTGA+CGG + chr1_2:70855150-70855169 Msa0089380:intron 30.0%
AGTTATATAACCCTGAACTT+TGG + chr1_2:70855173-70855192 Msa0089380:intron 30.0%
!!! AGTTCTGAAGGTTTTATTAG+CGG + chr1_2:70855409-70855428 Msa0089380:intron 30.0%
CGTCAATATATAACATCACA+AGG + chr1_2:70855444-70855463 Msa0089380:intron 30.0%
TATAACATCACAAGGACTTA+TGG + chr1_2:70855452-70855471 Msa0089380:intron 30.0%
ATAACATCACAAGGACTTAT+GGG + chr1_2:70855453-70855472 Msa0089380:intron 30.0%
!!! CTGTTAGTCCTTTTTTTTAG+GGG - chr1_2:70855483-70855502 None:intergenic 30.0%
!!! CCTGTTAGTCCTTTTTTTTA+GGG - chr1_2:70855484-70855503 None:intergenic 30.0%
!!! TCCTGTTAGTCCTTTTTTTT+AGG - chr1_2:70855485-70855504 None:intergenic 30.0%
! ATGCCATTTCATTCTCAATA+AGG - chr1_2:70855669-70855688 None:intergenic 30.0%
ATGTAACACTATTTCCTACT+TGG - chr1_2:70855743-70855762 None:intergenic 30.0%
TAGGAAATAGTGTTACATGA+GGG + chr1_2:70855745-70855764 Msa0089380:intron 30.0%
ACTGCTTAGTGAAAAATTAG+TGG + chr1_2:70855996-70856015 Msa0089380:intron 30.0%
CTGCTTAGTGAAAAATTAGT+GGG + chr1_2:70855997-70856016 Msa0089380:intron 30.0%
TGGGTATGAACTAAATCAAA+AGG + chr1_2:70856016-70856035 Msa0089380:intron 30.0%
! AATTTTACATATCGACACCA+TGG - chr1_2:70856056-70856075 None:intergenic 30.0%
ATATCAAAAAGGAACAGCTA+CGG - chr1_2:70856264-70856283 None:intergenic 30.0%
AGTGTCTTCACATATCAAAA+AGG - chr1_2:70856275-70856294 None:intergenic 30.0%
AAAAATACCTCGTCAAGAAT+AGG - chr1_2:70856405-70856424 None:intergenic 30.0%
TTATAACTACATTCTTGACG+AGG + chr1_2:70856470-70856489 Msa0089380:intron 30.0%
!! CTTTTCTTCATACTAGTTTC+AGG - chr1_2:70856568-70856587 None:intergenic 30.0%
GAAACTAGTATGAAGAAAAG+AGG + chr1_2:70856568-70856587 Msa0089380:CDS 30.0%
! AACTAGAAATTGATGATTCG+AGG + chr1_2:70856600-70856619 Msa0089380:exon 30.0%
TTGCAAATCACATCATTCTT+CGG - chr1_2:70856634-70856653 None:intergenic 30.0%
TTTAGTGTGATTTACAGAGA+TGG + chr1_2:70856660-70856679 Msa0089380:three_prime_UTR 30.0%
ACAGCTAAAATACTCTAAAC+AGG - chr1_2:70856956-70856975 None:intergenic 30.0%
! TGAAGTTCTAATCGAGTATT+TGG + chr1_2:70856986-70857005 Msa0089380:three_prime_UTR 30.0%
AAGTGTTCATATATTAACCC+CGG + chr1_2:70857114-70857133 Msa0089380:three_prime_UTR 30.0%
GGGAAGAAAACAAAGAAAGT+CGG + chr1_2:70846690-70846709 Msa0089380:CDS 35.0%
AAAACAAAGAAAGTCGGCAA+AGG + chr1_2:70846696-70846715 Msa0089380:CDS 35.0%
AATGGCGTCAATATCATCTT+CGG - chr1_2:70846796-70846815 None:intergenic 35.0%
GGTATAGTTAGTTACGAGAA+TGG - chr1_2:70846814-70846833 None:intergenic 35.0%
AAGTGTTAACTAACGGCTTT+AGG - chr1_2:70846991-70847010 None:intergenic 35.0%
TATGGAGGTGAATTCTACAA+CGG + chr1_2:70847108-70847127 Msa0089380:intron 35.0%
CTTCATCGTTGTACTTTGTT+TGG + chr1_2:70847395-70847414 Msa0089380:intron 35.0%
GCAACTACTTAGTACATGTT+TGG - chr1_2:70847637-70847656 None:intergenic 35.0%
TATATGCAGACTTTCGTCTA+TGG + chr1_2:70847678-70847697 Msa0089380:intron 35.0%
TTACATCTCCAAATCAAGAG+AGG + chr1_2:70847919-70847938 Msa0089380:CDS 35.0%
CAGATTTAACCTTGTAGTGA+TGG - chr1_2:70847947-70847966 None:intergenic 35.0%
GTTTGTGGTTAAGGAAAATG+TGG + chr1_2:70847984-70848003 Msa0089380:intron 35.0%
GAAAATGTGGTTCACTTTAC+TGG + chr1_2:70847997-70848016 Msa0089380:intron 35.0%
! TTTGATCGCTGTAGGATTTT+TGG + chr1_2:70848051-70848070 Msa0089380:intron 35.0%
!! CTTAATTTAAAAGGGTGTCC+TGG + chr1_2:70848107-70848126 Msa0089380:CDS 35.0%
GGATATTCTTGCAAGAAAGT+TGG - chr1_2:70848194-70848213 None:intergenic 35.0%
!! TCTTAAGTCAAACGGGTTTT+CGG + chr1_2:70848224-70848243 Msa0089380:intron 35.0%
ATGATACACTTAGAGAAGTG+AGG + chr1_2:70848698-70848717 Msa0089380:CDS 35.0%
GTTGTTAGTGAATGTTAGCT+TGG + chr1_2:70848849-70848868 Msa0089380:intron 35.0%
!!! TAAGTTTTGGTTTTGAGGGA+TGG + chr1_2:70848885-70848904 Msa0089380:intron 35.0%
GCACGACATTTATGTTTGAA+TGG + chr1_2:70848959-70848978 Msa0089380:intron 35.0%
GGATTGAAAATAATCCAACG+AGG - chr1_2:70848987-70849006 None:intergenic 35.0%
TTGTATTTGGATGGTTGTGT+TGG + chr1_2:70849020-70849039 Msa0089380:intron 35.0%
TAGCGAGCATGATATGAATA+AGG + chr1_2:70849067-70849086 Msa0089380:intron 35.0%
AGCGAGCATGATATGAATAA+GGG + chr1_2:70849068-70849087 Msa0089380:intron 35.0%
ATTAAAAGTAGTGAGAGGGA+GGG + chr1_2:70849170-70849189 Msa0089380:intron 35.0%
CGTGGAATTTCTTGCAATAA+CGG - chr1_2:70849255-70849274 None:intergenic 35.0%
! TGACTCTGGAGATAGAAATA+TGG + chr1_2:70849286-70849305 Msa0089380:intron 35.0%
AATCAGTCTCTAGTTGTATG+TGG - chr1_2:70849478-70849497 None:intergenic 35.0%
!!! CACTTCTTAATTGGTTTTGC+AGG + chr1_2:70849532-70849551 Msa0089380:intron 35.0%
CATAAGCAAAACTCAAACGT+CGG + chr1_2:70849657-70849676 Msa0089380:intron 35.0%
TAATGATTGAAACGACACGT+GGG - chr1_2:70849925-70849944 None:intergenic 35.0%
ATAATGATTGAAACGACACG+TGG - chr1_2:70849926-70849945 None:intergenic 35.0%
ATGAACAATTCCTTTCTCAG+AGG - chr1_2:70850076-70850095 None:intergenic 35.0%
! GTGGTTTGGAGTTTAGTATT+TGG + chr1_2:70850144-70850163 Msa0089380:intron 35.0%
! AACATACGGTATTTTTCTGG+GGG - chr1_2:70850213-70850232 None:intergenic 35.0%
TCTTCTTAACCTACCAAGAA+GGG - chr1_2:70850276-70850295 None:intergenic 35.0%
TTTCCATGTGTGTTCATAAG+AGG + chr1_2:70850326-70850345 Msa0089380:CDS 35.0%
GTTGTGGATATAGAAGTTGA+AGG + chr1_2:70850370-70850389 Msa0089380:CDS 35.0%
GTCTGATTAAATTCTTTCGG+AGG + chr1_2:70850536-70850555 Msa0089380:intron 35.0%
AATCTAAACTTACCAGCGAT+TGG - chr1_2:70850786-70850805 None:intergenic 35.0%
TATCCTTTCTTAACTCCAGA+GGG - chr1_2:70851008-70851027 None:intergenic 35.0%
TTATCCTTTCTTAACTCCAG+AGG - chr1_2:70851009-70851028 None:intergenic 35.0%
! AGTTTTGCTGCCTAATGAAA+TGG + chr1_2:70851116-70851135 Msa0089380:intron 35.0%
! GTTTTGCTGCCTAATGAAAT+GGG + chr1_2:70851117-70851136 Msa0089380:intron 35.0%
ACTGCAAAACCCATTTCATT+AGG - chr1_2:70851129-70851148 None:intergenic 35.0%
AAGTGTTTCATTGTCAGCAA+TGG - chr1_2:70851293-70851312 None:intergenic 35.0%
TTGGTTCAAAATGCAAACCT+CGG - chr1_2:70851377-70851396 None:intergenic 35.0%
AGTGTCATCACTAAGATTGT+TGG - chr1_2:70851396-70851415 None:intergenic 35.0%
AACAATCTTAGTGATGACAC+TGG + chr1_2:70851395-70851414 Msa0089380:intron 35.0%
ACCTTAGCAAACTTGATGAA+TGG + chr1_2:70851593-70851612 Msa0089380:CDS 35.0%
!! TCCATTCATCAAGTTTGCTA+AGG - chr1_2:70851597-70851616 None:intergenic 35.0%
! TGAATGGAAGTGCATTATAC+CGG + chr1_2:70851609-70851628 Msa0089380:CDS 35.0%
! GTTCTTTCCTTGACTACTTT+TGG + chr1_2:70851637-70851656 Msa0089380:intron 35.0%
TCATTTGTTCTTGACTACTC+TGG + chr1_2:70851705-70851724 Msa0089380:intron 35.0%
TACTACTCCACTACTTATCT+GGG - chr1_2:70851837-70851856 None:intergenic 35.0%
GACTATTCAAGACAATATGC+AGG + chr1_2:70852202-70852221 Msa0089380:intron 35.0%
CAATATCAACTGTATCTGCA+CGG - chr1_2:70852452-70852471 None:intergenic 35.0%
TAATAGTGATGGTACAAGTG+AGG + chr1_2:70852655-70852674 Msa0089380:CDS 35.0%
!!! AGAGAACCCCTTTTTTCTAT+AGG + chr1_2:70852796-70852815 Msa0089380:intron 35.0%
!!! ACCCCTTTTTTCTATAGGAA+AGG + chr1_2:70852801-70852820 Msa0089380:intron 35.0%
! AATTGACCATAACTTGCATG+AGG - chr1_2:70852845-70852864 None:intergenic 35.0%
GTATAAGGCTAAATAAGGGA+TGG - chr1_2:70852870-70852889 None:intergenic 35.0%
! GCTGAGTTGAAGATTCAATT+TGG - chr1_2:70852951-70852970 None:intergenic 35.0%
!! GGTTCGTTTTTAGAGAAAAG+GGG - chr1_2:70852995-70853014 None:intergenic 35.0%
!! CAGGTTCGTTTTTAGAGAAA+AGG - chr1_2:70852997-70853016 None:intergenic 35.0%
!! CTTTTCTCTAAAAACGAACC+TGG + chr1_2:70852995-70853014 Msa0089380:intron 35.0%
! TTTTTCTCATGGACATTGTG+CGG - chr1_2:70853053-70853072 None:intergenic 35.0%
!! TTCTGAGGGTATTGAATGAA+TGG + chr1_2:70853314-70853333 Msa0089380:intron 35.0%
! TACCATCGACTAAAAAGTGA+TGG + chr1_2:70853492-70853511 Msa0089380:intron 35.0%
! ACCATCGACTAAAAAGTGAT+GGG + chr1_2:70853493-70853512 Msa0089380:intron 35.0%
TGTCAACCTAAGATCCAAAT+AGG + chr1_2:70853527-70853546 Msa0089380:intron 35.0%
AACCTAAGATCCAAATAGGA+TGG + chr1_2:70853531-70853550 Msa0089380:intron 35.0%
ATCCATCCTATTTGGATCTT+AGG - chr1_2:70853536-70853555 None:intergenic 35.0%
TAAGATCCAAATAGGATGGA+TGG + chr1_2:70853535-70853554 Msa0089380:intron 35.0%
TTCATTCCATCCATCCTATT+TGG - chr1_2:70853544-70853563 None:intergenic 35.0%
AAATAGGATGGATGGAATGA+AGG + chr1_2:70853543-70853562 Msa0089380:intron 35.0%
AATAGGATGGATGGAATGAA+GGG + chr1_2:70853544-70853563 Msa0089380:intron 35.0%
CATTAGAAAGAAAATTGGGG+TGG + chr1_2:70853684-70853703 Msa0089380:intron 35.0%
! TGTAAAGCCTTATGCGTATT+CGG - chr1_2:70853873-70853892 None:intergenic 35.0%
! CAATCAGACCTTTTTCCATT+AGG - chr1_2:70853925-70853944 None:intergenic 35.0%
ATAATCAAGAAAGGGAGAGA+AGG + chr1_2:70853966-70853985 Msa0089380:intron 35.0%
AAGGAAAGTGAAGACCTAAA+AGG - chr1_2:70854027-70854046 None:intergenic 35.0%
! TTTAGCTCAAAGCTGTACAA+AGG + chr1_2:70854122-70854141 Msa0089380:intron 35.0%
TTAGCTCAAAGCTGTACAAA+GGG + chr1_2:70854123-70854142 Msa0089380:intron 35.0%
CTGTACAAAGGGAATACAAA+AGG + chr1_2:70854134-70854153 Msa0089380:intron 35.0%
TGGCAAAATCAATTGTGTCT+TGG - chr1_2:70854168-70854187 None:intergenic 35.0%
CAGAAAGTCTCATTGTTTCA+GGG - chr1_2:70854424-70854443 None:intergenic 35.0%
!! AGATGCTGTAGCTTTAATCA+AGG + chr1_2:70854504-70854523 Msa0089380:CDS 35.0%
!! GATGCTGTAGCTTTAATCAA+GGG + chr1_2:70854505-70854524 Msa0089380:CDS 35.0%
CAAGACAATTAAGAAAGCAG+TGG - chr1_2:70854800-70854819 None:intergenic 35.0%
ACGCTTAAAGAAATCTCTCA+AGG - chr1_2:70854845-70854864 None:intergenic 35.0%
!! TACAGACCGTATAGCTTTAT+GGG - chr1_2:70854967-70854986 None:intergenic 35.0%
TGCAAGAAAACCAAAGTTCA+GGG - chr1_2:70855186-70855205 None:intergenic 35.0%
TTGCAAGAAAACCAAAGTTC+AGG - chr1_2:70855187-70855206 None:intergenic 35.0%
ATACTTGAGGGACAAAATTG+GGG - chr1_2:70855347-70855366 None:intergenic 35.0%
GATACTTGAGGGACAAAATT+GGG - chr1_2:70855348-70855367 None:intergenic 35.0%
CCCTAAAAAAAAGGACTAAC+AGG + chr1_2:70855481-70855500 Msa0089380:intron 35.0%
TATGTAAAGAGGCAAGCTAA+AGG + chr1_2:70855563-70855582 Msa0089380:intron 35.0%
! ATATACTTTAGGGACCAAGT+AGG + chr1_2:70855726-70855745 Msa0089380:intron 35.0%
GTAGGAAATAGTGTTACATG+AGG + chr1_2:70855744-70855763 Msa0089380:intron 35.0%
AGGAAATAGTGTTACATGAG+GGG + chr1_2:70855746-70855765 Msa0089380:intron 35.0%
GTTTCAGAAGGTAACAATGA+GGG - chr1_2:70856183-70856202 None:intergenic 35.0%
TGTTTCAGAAGGTAACAATG+AGG - chr1_2:70856184-70856203 None:intergenic 35.0%
ACATGAATGCCTAATGTTTG+TGG + chr1_2:70856310-70856329 Msa0089380:intron 35.0%
CCTAATGTTTGTGGTGAAAT+GGG + chr1_2:70856319-70856338 Msa0089380:intron 35.0%
!!! TTTTTTTGCGCTCACATCAT+TGG + chr1_2:70856423-70856442 Msa0089380:intron 35.0%
! GGTGTTCAGAACTTTTTGTT+TGG + chr1_2:70856681-70856700 Msa0089380:three_prime_UTR 35.0%
AAATCTCCTCCTCAAAATCA+AGG + chr1_2:70856802-70856821 Msa0089380:three_prime_UTR 35.0%
!! TTCTATCCTTGATTTTGAGG+AGG - chr1_2:70856811-70856830 None:intergenic 35.0%
! GGATTCTATCCTTGATTTTG+AGG - chr1_2:70856814-70856833 None:intergenic 35.0%
! CAAAGGACCTTGAATTTTGA+AGG - chr1_2:70856922-70856941 None:intergenic 35.0%
TACTCTAAACAGGTAGAACA+CGG - chr1_2:70856946-70856965 None:intergenic 35.0%
TTCATCTATACCGCTATGAT+CGG + chr1_2:70857072-70857091 Msa0089380:three_prime_UTR 35.0%
ATGACATAATTTCCAACGAC+CGG - chr1_2:70857136-70857155 None:intergenic 35.0%
AAATAAGAGAGAGAGGAGAG+TGG + chr1_2:70846557-70846576 Msa0089380:CDS 40.0%
! CAATTCTACGTTTGGTTTCG+CGG + chr1_2:70846615-70846634 Msa0089380:CDS 40.0%
!!! TCGTTTCATATCGGCTTTTG+CGG - chr1_2:70846745-70846764 None:intergenic 40.0%
ATGGCGTCAATATCATCTTC+GGG - chr1_2:70846795-70846814 None:intergenic 40.0%
!! CTTTAGGATTACCGAGCAAT+TGG - chr1_2:70846975-70846994 None:intergenic 40.0%
! TCCTTTGAAAGAGACTGAGT+TGG + chr1_2:70847080-70847099 Msa0089380:intron 40.0%
ACCAACTCAGTCTCTTTCAA+AGG - chr1_2:70847084-70847103 None:intergenic 40.0%
!! GAGACTGAGTTGGTTCTATA+TGG + chr1_2:70847090-70847109 Msa0089380:intron 40.0%
!! ACTGAGTTGGTTCTATATGG+AGG + chr1_2:70847093-70847112 Msa0089380:intron 40.0%
ATGGAGGTGAATTCTACAAC+GGG + chr1_2:70847109-70847128 Msa0089380:intron 40.0%
TGAATTCTACAACGGGAACA+AGG + chr1_2:70847116-70847135 Msa0089380:intron 40.0%
!! TTGTAGCTTTCAAGTTGAGG+TGG - chr1_2:70847508-70847527 None:intergenic 40.0%
! TTAGTACATGTTTGGTTCCG+CGG - chr1_2:70847629-70847648 None:intergenic 40.0%
AGTAGTTGCAACTTACCATC+AGG + chr1_2:70847648-70847667 Msa0089380:intron 40.0%
TCGATATGATGTTGAGAAGC+TGG + chr1_2:70847710-70847729 Msa0089380:intron 40.0%
TGATGGAACCTCTCTTGATT+TGG - chr1_2:70847930-70847949 None:intergenic 40.0%
!! GCTGTAGGATTTTTGGATGT+TGG + chr1_2:70848058-70848077 Msa0089380:intron 40.0%
TGGACCTGAAAACTAATCAG+TGG + chr1_2:70848078-70848097 Msa0089380:CDS 40.0%
GGACCTGAAAACTAATCAGT+GGG + chr1_2:70848079-70848098 Msa0089380:CDS 40.0%
!!! GTTCCCACTGATTAGTTTTC+AGG - chr1_2:70848085-70848104 None:intergenic 40.0%
ATCACAGATTCCCTCTATCT+TGG + chr1_2:70848381-70848400 Msa0089380:intron 40.0%
TGTTATGCTCTCAAAACGTG+TGG - chr1_2:70848451-70848470 None:intergenic 40.0%
CTTTACGGAATTCTCAGAGA+TGG - chr1_2:70848552-70848571 None:intergenic 40.0%
! GCAAGTTTTTCATCAGATGC+AGG - chr1_2:70848773-70848792 None:intergenic 40.0%
!!! TTTGGTTTTGAGGGATGGAA+TGG + chr1_2:70848890-70848909 Msa0089380:intron 40.0%
!!! AGATTTTAAGTTGCGGCAAG+TGG + chr1_2:70849099-70849118 Msa0089380:intron 40.0%
GATTAAAAGTAGTGAGAGGG+AGG + chr1_2:70849169-70849188 Msa0089380:intron 40.0%
AGAGTCAAGAACATTGATCG+TGG - chr1_2:70849273-70849292 None:intergenic 40.0%
ACGATCAATGTTCTTGACTC+TGG + chr1_2:70849272-70849291 Msa0089380:intron 40.0%
! TCTCTTTTATGTTTCGCACG+AGG + chr1_2:70849359-70849378 Msa0089380:intron 40.0%
CACACATGAGAGTTAAATGG+AGG + chr1_2:70849444-70849463 Msa0089380:intron 40.0%
!! CGACGTTTGAGTTTTGCTTA+TGG - chr1_2:70849659-70849678 None:intergenic 40.0%
ACTGCAGCACAAAATCAGAT+TGG - chr1_2:70849731-70849750 None:intergenic 40.0%
! AATCTGATTTTGTGCTGCAG+TGG + chr1_2:70849730-70849749 Msa0089380:intron 40.0%
CAAGAAATAAAGCCTAAGCC+TGG + chr1_2:70849753-70849772 Msa0089380:CDS 40.0%
TTGTTCCATTCCCAAGTCTT+GGG - chr1_2:70850120-70850139 None:intergenic 40.0%
AATGGAACAAGGTTGTGGTT+TGG + chr1_2:70850130-70850149 Msa0089380:intron 40.0%
AACATTCCTTTCTCCCTTCT+TGG + chr1_2:70850260-70850279 Msa0089380:intron 40.0%
CTCTTCTTAACCTACCAAGA+AGG - chr1_2:70850277-70850296 None:intergenic 40.0%
TCTTGGTAGGTTAAGAAGAG+TGG + chr1_2:70850277-70850296 Msa0089380:intron 40.0%
CTTGGTAGGTTAAGAAGAGT+GGG + chr1_2:70850278-70850297 Msa0089380:intron 40.0%
CATGTGTGTTCATAAGAGGA+GGG + chr1_2:70850330-70850349 Msa0089380:CDS 40.0%
!! GTTTATGCTTGCTGTATGGT+TGG + chr1_2:70850678-70850697 Msa0089380:intron 40.0%
! TTGAGCTTTTCTGCATATGC+TGG + chr1_2:70850908-70850927 Msa0089380:intron 40.0%
CTCTCATATTAAACGGTTCG+TGG + chr1_2:70850947-70850966 Msa0089380:intron 40.0%
TTTGTGAAATAGGTACCCTC+TGG + chr1_2:70850990-70851009 Msa0089380:intron 40.0%
TACTAACGATGTCGACAAGA+AGG + chr1_2:70851171-70851190 Msa0089380:CDS 40.0%
TCATCTCTTGCAGTAGATAG+TGG - chr1_2:70851202-70851221 None:intergenic 40.0%
AAGAGATGAAGCTGAGGATA+TGG + chr1_2:70851213-70851232 Msa0089380:CDS 40.0%
GAAACACTTACCAAACCTGA+AGG + chr1_2:70851304-70851323 Msa0089380:CDS 40.0%
! CTTAGACTTTCCTTCAGGTT+TGG - chr1_2:70851317-70851336 None:intergenic 40.0%
CAAACCTGAAGGAAAGTCTA+AGG + chr1_2:70851315-70851334 Msa0089380:CDS 40.0%
GATTCCTTAGACTTTCCTTC+AGG - chr1_2:70851322-70851341 None:intergenic 40.0%
GAAGGAAAGTCTAAGGAATC+TGG + chr1_2:70851322-70851341 Msa0089380:CDS 40.0%
CATTCAAAATTCTTTGCCCG+AGG + chr1_2:70851357-70851376 Msa0089380:CDS 40.0%
TGGTTCAAAATGCAAACCTC+GGG - chr1_2:70851376-70851395 None:intergenic 40.0%
GTTTCACTGCCTAGAAAGTT+TGG - chr1_2:70851459-70851478 None:intergenic 40.0%
ATTAATTCCTGCATGGCTGT+TGG + chr1_2:70851490-70851509 Msa0089380:CDS 40.0%
GTCAAGGAAAGAACACAAAC+CGG - chr1_2:70851631-70851650 None:intergenic 40.0%
CTATCAGCCAAAAGTAGTCA+AGG - chr1_2:70851647-70851666 None:intergenic 40.0%
ATCGTTCACTAACTTAGCAG+TGG - chr1_2:70851805-70851824 None:intergenic 40.0%
TATCCTTCCCAGATAAGTAG+TGG + chr1_2:70851827-70851846 Msa0089380:intron 40.0%
CTACTACTCCACTACTTATC+TGG - chr1_2:70851838-70851857 None:intergenic 40.0%
TTCCTGAAATTGTAAGGGCT+AGG + chr1_2:70852050-70852069 Msa0089380:intron 40.0%
! CGAAGATGATGATGATGATG+AGG + chr1_2:70852682-70852701 Msa0089380:CDS 40.0%
! AGATGATGATGATGATGAGG+AGG + chr1_2:70852685-70852704 Msa0089380:CDS 40.0%
AGAAAAAAGGGGTTCTCTCT+AGG - chr1_2:70852794-70852813 None:intergenic 40.0%
GTCATACCTCATGCAAGTTA+TGG + chr1_2:70852836-70852855 Msa0089380:intron 40.0%
CCGCGTATAAGGCTAAATAA+GGG - chr1_2:70852874-70852893 None:intergenic 40.0%
!! CCCTTATTTAGCCTTATACG+CGG + chr1_2:70852871-70852890 Msa0089380:intron 40.0%
!! CCTTATTTAGCCTTATACGC+GGG + chr1_2:70852872-70852891 Msa0089380:intron 40.0%
!! CTTATTTAGCCTTATACGCG+GGG + chr1_2:70852873-70852892 Msa0089380:intron 40.0%
!! TTATTTAGCCTTATACGCGG+GGG + chr1_2:70852874-70852893 Msa0089380:intron 40.0%
GGGGGAACAAATCATTCATT+TGG + chr1_2:70852892-70852911 Msa0089380:intron 40.0%
AAGGGGAAGAACTGTTCATT+TGG - chr1_2:70852978-70852997 None:intergenic 40.0%
CTAAAAACGAACCTGGACAA+AGG + chr1_2:70853002-70853021 Msa0089380:intron 40.0%
!! TCACTTTTCAACCTTTGTCC+AGG - chr1_2:70853016-70853035 None:intergenic 40.0%
!! TGAGGGTATTGAATGAATGG+AGG + chr1_2:70853317-70853336 Msa0089380:intron 40.0%
! CCATCGACTAAAAAGTGATG+GGG + chr1_2:70853494-70853513 Msa0089380:intron 40.0%
! CATCGACTAAAAAGTGATGG+GGG + chr1_2:70853495-70853514 Msa0089380:intron 40.0%
! ATCGACTAAAAAGTGATGGG+GGG + chr1_2:70853496-70853515 Msa0089380:intron 40.0%
!! AAAGTACCGCTCAAGCTAAT+CGG + chr1_2:70853590-70853609 Msa0089380:intron 40.0%
!!! GTGGTCCCATTTTAGAATGA+TGG + chr1_2:70853703-70853722 Msa0089380:intron 40.0%
!! ATGTAGAAGTACCCCTAATG+AGG + chr1_2:70853739-70853758 Msa0089380:intron 40.0%
!! TGTAGAAGTACCCCTAATGA+GGG + chr1_2:70853740-70853759 Msa0089380:intron 40.0%
GTGGAGTATAGTTCAGTAGA+GGG + chr1_2:70853771-70853790 Msa0089380:intron 40.0%
AAACGCCACCTAATGGAAAA+AGG + chr1_2:70853914-70853933 Msa0089380:intron 40.0%
! TCAGACCTTTTTCCATTAGG+TGG - chr1_2:70853922-70853941 None:intergenic 40.0%
AAAGACAAACATCACGTTGC+AGG - chr1_2:70854263-70854282 None:intergenic 40.0%
GCAGAAAGTCTCATTGTTTC+AGG - chr1_2:70854425-70854444 None:intergenic 40.0%
TCTGAATGCATCAGATCAAG+TGG + chr1_2:70854480-70854499 Msa0089380:CDS 40.0%
CTGAATGCATCAGATCAAGT+GGG + chr1_2:70854481-70854500 Msa0089380:CDS 40.0%
!! CTGTAGCTTTAATCAAGGGA+GGG + chr1_2:70854509-70854528 Msa0089380:CDS 40.0%
!! TGTAGCTTTAATCAAGGGAG+GGG + chr1_2:70854510-70854529 Msa0089380:CDS 40.0%
ATCTGCGTAGGAAAGAAAGA+AGG + chr1_2:70854539-70854558 Msa0089380:CDS 40.0%
GTAGGAAAGAAAGAAGGTCA+CGG + chr1_2:70854545-70854564 Msa0089380:CDS 40.0%
AGATTCACAGAGAACACCAT+TGG + chr1_2:70854600-70854619 Msa0089380:CDS 40.0%
AGAAAGGTAGTAGAGCTCAA+TGG - chr1_2:70854713-70854732 None:intergenic 40.0%
CTACCTTTCTTGATTGTGTC+TGG + chr1_2:70854723-70854742 Msa0089380:intron 40.0%
CAACCAGACACAATCAAGAA+AGG - chr1_2:70854729-70854748 None:intergenic 40.0%
! AAGCTCAAAGAGGCTTTTGT+AGG - chr1_2:70854760-70854779 None:intergenic 40.0%
! CTACAGACCGTATAGCTTTA+TGG - chr1_2:70854968-70854987 None:intergenic 40.0%
! CTTAATGTATTCTGGGGGAA+CGG + chr1_2:70855042-70855061 Msa0089380:intron 40.0%
! GACTTGGTCAATTTGAGATG+AGG - chr1_2:70855097-70855116 None:intergenic 40.0%
TACTTGAGGGACAAAATTGG+GGG - chr1_2:70855346-70855365 None:intergenic 40.0%
CGATACTTGAGGGACAAAAT+TGG - chr1_2:70855349-70855368 None:intergenic 40.0%
AATAGACGAGCGATACTTGA+GGG - chr1_2:70855359-70855378 None:intergenic 40.0%
AAATAGACGAGCGATACTTG+AGG - chr1_2:70855360-70855379 None:intergenic 40.0%
TGGGATAGCCCCTAAAAAAA+AGG + chr1_2:70855472-70855491 Msa0089380:intron 40.0%
AATAAGGCGCACAATCAATC+AGG - chr1_2:70855653-70855672 None:intergenic 40.0%
! GCGCCTTATTGAGAATGAAA+TGG + chr1_2:70855663-70855682 Msa0089380:intron 40.0%
TTGGTTGTGCTTGTTTCAGA+AGG - chr1_2:70856195-70856214 None:intergenic 40.0%
GGAAGTTCAAATAGAGCTAG+AGG - chr1_2:70856238-70856257 None:intergenic 40.0%
GCCTAATGTTTGTGGTGAAA+TGG + chr1_2:70856318-70856337 Msa0089380:intron 40.0%
CCCATTTCACCACAAACATT+AGG - chr1_2:70856322-70856341 None:intergenic 40.0%
TTTGTGGTGAAATGGGTGAT+AGG + chr1_2:70856326-70856345 Msa0089380:intron 40.0%
CAAGATCAAAACCATCCTTG+CGG - chr1_2:70856356-70856375 None:intergenic 40.0%
ATCTTGCAGAAACACGATAC+AGG + chr1_2:70856370-70856389 Msa0089380:CDS 40.0%
TCTTGCAGAAACACGATACA+GGG + chr1_2:70856371-70856390 Msa0089380:CDS 40.0%
GCTAAAACCTATTCTTGACG+AGG + chr1_2:70856395-70856414 Msa0089380:CDS 40.0%
!! CTCACATCATTGGCTCAAAT+TGG + chr1_2:70856433-70856452 Msa0089380:intron 40.0%
! CTTTCTTTTGTCACTGTAGC+TGG + chr1_2:70856501-70856520 Msa0089380:intron 40.0%
! AAATTGATGATTCGAGGCCA+GGG + chr1_2:70856606-70856625 Msa0089380:exon 40.0%
!! GATTTTGAGGAGGAGATTTG+TGG - chr1_2:70856801-70856820 None:intergenic 40.0%
!! CCTTGAATTTTGAAGGCAGT+TGG - chr1_2:70856915-70856934 None:intergenic 40.0%
CCAACTGCCTTCAAAATTCA+AGG + chr1_2:70856912-70856931 Msa0089380:three_prime_UTR 40.0%
ACTCTAAACAGGTAGAACAC+GGG - chr1_2:70856945-70856964 None:intergenic 40.0%
CTCGATTAGAACTTCAGCAT+TGG - chr1_2:70856982-70857001 None:intergenic 40.0%
AGGCTGCACATGACAAAATA+AGG - chr1_2:70857029-70857048 None:intergenic 40.0%
! TATTTTGTCATGTGCAGCCT+AGG + chr1_2:70857029-70857048 Msa0089380:three_prime_UTR 40.0%
GGTATAGATGAAGCAACCAT+AGG - chr1_2:70857064-70857083 None:intergenic 40.0%
TGACATAATTTCCAACGACC+GGG - chr1_2:70857135-70857154 None:intergenic 40.0%
CCTACGTGCTCGTTTCATAT+CGG - chr1_2:70846754-70846773 None:intergenic 45.0%
CGATATGAAACGAGCACGTA+GGG + chr1_2:70846752-70846771 Msa0089380:CDS 45.0%
TCTACAACGGGAACAAGGTT+AGG + chr1_2:70847121-70847140 Msa0089380:intron 45.0%
ATGATGTTGAGAAGCTGGAG+TGG + chr1_2:70847715-70847734 Msa0089380:intron 45.0%
AGAGAGGTTCCATCACTACA+AGG + chr1_2:70847935-70847954 Msa0089380:CDS 45.0%
! TAACCACAAACAGAAGCGCA+AGG - chr1_2:70847975-70847994 None:intergenic 45.0%
TGCGCTTCTGTTTGTGGTTA+AGG + chr1_2:70847975-70847994 Msa0089380:intron 45.0%
AGAGGGAATCTGTGATTGTC+AGG - chr1_2:70848377-70848396 None:intergenic 45.0%
ATGTTTGAATGGACCCTCGT+TGG + chr1_2:70848970-70848989 Msa0089380:intron 45.0%
TGCGGCAAGTGGAATAAAGA+AGG + chr1_2:70849110-70849129 Msa0089380:intron 45.0%
! GACAAGAATGCCTCTGAGAA+AGG + chr1_2:70850063-70850082 Msa0089380:CDS 45.0%
TTCCCAAGTCTTGGGATCAA+GGG - chr1_2:70850112-70850131 None:intergenic 45.0%
ATTCCCAAGTCTTGGGATCA+AGG - chr1_2:70850113-70850132 None:intergenic 45.0%
TTGATCCCAAGACTTGGGAA+TGG + chr1_2:70850112-70850131 Msa0089380:CDS 45.0%
CTTGTTCCATTCCCAAGTCT+TGG - chr1_2:70850121-70850140 None:intergenic 45.0%
CAAGACTTGGGAATGGAACA+AGG + chr1_2:70850119-70850138 Msa0089380:CDS 45.0%
TTGGGAATGGAACAAGGTTG+TGG + chr1_2:70850125-70850144 Msa0089380:intron 45.0%
!! GGTTTGAGTTGCCTAAGAAG+AGG - chr1_2:70850184-70850203 None:intergenic 45.0%
!! GTATTTTTCTGGGGGTCTAG+GGG - chr1_2:70850205-70850224 None:intergenic 45.0%
!! GGTATTTTTCTGGGGGTCTA+GGG - chr1_2:70850206-70850225 None:intergenic 45.0%
TTCCTTTCTCCCTTCTTGGT+AGG + chr1_2:70850264-70850283 Msa0089380:intron 45.0%
AACCTACCAAGAAGGGAGAA+AGG - chr1_2:70850269-70850288 None:intergenic 45.0%
CCTCCTCTTATGAACACACA+TGG - chr1_2:70850332-70850351 None:intergenic 45.0%
CCATGTGTGTTCATAAGAGG+AGG + chr1_2:70850329-70850348 Msa0089380:CDS 45.0%
!! TCTGCTATTTGGTGGTGTTG+TGG + chr1_2:70850354-70850373 Msa0089380:CDS 45.0%
TGCACAAGATCTCATCAGTG+AGG + chr1_2:70850476-70850495 Msa0089380:intron 45.0%
TGCACAAGATCTCATCAGTG+AGG + chr1_2:70850476-70850495 Msa0089380:intron 45.0%
TTCAGTTAGACACCAATCGC+TGG + chr1_2:70850771-70850790 Msa0089380:CDS 45.0%
!! GTACCCTCTGGAGTTAAGAA+AGG + chr1_2:70851002-70851021 Msa0089380:CDS 45.0%
TACTGCAAGAGATGAAGCTG+AGG + chr1_2:70851207-70851226 Msa0089380:CDS 45.0%
CAGGAATTAATGCGTCCACA+GGG - chr1_2:70851481-70851500 None:intergenic 45.0%
TGGACGCATTAATTCCTGCA+TGG + chr1_2:70851483-70851502 Msa0089380:CDS 45.0%
ACTCCACTACTTATCTGGGA+AGG - chr1_2:70851833-70851852 None:intergenic 45.0%
TGCCTAGCCCTTACAATTTC+AGG - chr1_2:70852055-70852074 None:intergenic 45.0%
ACTTCTTTCTTCTTCCACCC+AGG + chr1_2:70852556-70852575 Msa0089380:intron 45.0%
CCATTCAGATTCTGATGCCT+GGG - chr1_2:70852576-70852595 None:intergenic 45.0%
CCAGGCATCAGAATCTGAAT+GGG + chr1_2:70852574-70852593 Msa0089380:intron 45.0%
TGAATGGGTGGAAGTTTCAG+AGG + chr1_2:70852589-70852608 Msa0089380:CDS 45.0%
! TGATGATGATGATGAGGAGG+AGG + chr1_2:70852688-70852707 Msa0089380:CDS 45.0%
CCCGCGTATAAGGCTAAATA+AGG - chr1_2:70852875-70852894 None:intergenic 45.0%
!! ATTTGGTGTGGCTCCATTTC+AGG + chr1_2:70852909-70852928 Msa0089380:intron 45.0%
!!! CCCCATCACTTTTTAGTCGA+TGG - chr1_2:70853497-70853516 None:intergenic 45.0%
!! TGTAGTCCGATTAGCTTGAG+CGG - chr1_2:70853599-70853618 None:intergenic 45.0%
ACCTAGTCAACCCTCATTAG+GGG - chr1_2:70853753-70853772 None:intergenic 45.0%
CACCTAGTCAACCCTCATTA+GGG - chr1_2:70853754-70853773 None:intergenic 45.0%
GGTGGAGTATAGTTCAGTAG+AGG + chr1_2:70853770-70853789 Msa0089380:intron 45.0%
GTGTGAACCGAATACGCATA+AGG + chr1_2:70853863-70853882 Msa0089380:intron 45.0%
CTGTATCAAACGCCACCTAA+TGG + chr1_2:70853907-70853926 Msa0089380:intron 45.0%
GCAATGCTCAGTGTCTATCA+TGG - chr1_2:70854301-70854320 None:intergenic 45.0%
GCGATCAACTCTTCATAACC+AGG + chr1_2:70854386-70854405 Msa0089380:intron 45.0%
TCAGGGAAAAACAAACTGCC+TGG - chr1_2:70854407-70854426 None:intergenic 45.0%
!! GGCTTTACGTTTTGGTCACT+AGG + chr1_2:70854456-70854475 Msa0089380:intron 45.0%
!! GCTGTAGCTTTAATCAAGGG+AGG + chr1_2:70854508-70854527 Msa0089380:CDS 45.0%
TCTGTGAATCTGACAAGCCA+AGG - chr1_2:70854591-70854610 None:intergenic 45.0%
! GTCTTGTTGCATGTAAAGGC+AGG + chr1_2:70854814-70854833 Msa0089380:intron 45.0%
AGTGTGCTGAGTGTGTTCAT+GGG - chr1_2:70854893-70854912 None:intergenic 45.0%
ACTCAGCACACTGGAAAAGT+AGG + chr1_2:70854901-70854920 Msa0089380:intron 45.0%
TGTCGCCCATAATCTAGCTA+GGG + chr1_2:70855586-70855605 Msa0089380:intron 45.0%
TACATGAGGGGCTAACTTGA+AGG + chr1_2:70855758-70855777 Msa0089380:intron 45.0%
AAAAAGGAACAGCTACGGAG+AGG - chr1_2:70856259-70856278 None:intergenic 45.0%
! GAAATTGATGATTCGAGGCC+AGG + chr1_2:70856605-70856624 Msa0089380:exon 45.0%
GGAGAGCTAAACGAGTTTGT+CGG + chr1_2:70856844-70856863 Msa0089380:three_prime_UTR 45.0%
CACGGACAAAATCAATGGCA+CGG - chr1_2:70856883-70856902 None:intergenic 45.0%
CATGGCACGGACAAAATCAA+TGG - chr1_2:70856888-70856907 None:intergenic 45.0%
TTGAAGGCAGTTGGAGAACA+TGG - chr1_2:70856906-70856925 None:intergenic 45.0%
GTTGAAAGAGCCGATCATAG+CGG - chr1_2:70857085-70857104 None:intergenic 45.0%
CATATATTAACCCCGGTCGT+TGG + chr1_2:70857121-70857140 Msa0089380:three_prime_UTR 45.0%
GACATAATTTCCAACGACCG+GGG - chr1_2:70857134-70857153 None:intergenic 45.0%
!!! TAAATATTTTTATATACTTT+AGG + chr1_2:70855715-70855734 Msa0089380:intron 5.0%
!!! AAATATTTTTATATACTTTA+GGG + chr1_2:70855716-70855735 Msa0089380:intron 5.0%
!! AATATCAATATATAAATATA+TGG - chr1_2:70855899-70855918 None:intergenic 5.0%
! TTCTACGTTTGGTTTCGCGG+CGG + chr1_2:70846618-70846637 Msa0089380:CDS 50.0%
CCGATATGAAACGAGCACGT+AGG + chr1_2:70846751-70846770 Msa0089380:CDS 50.0%
TTCTCCTCGCTCCAATTGCT+CGG + chr1_2:70846961-70846980 Msa0089380:CDS 50.0%
ATTACCGAGCAATTGGAGCG+AGG - chr1_2:70846968-70846987 None:intergenic 50.0%
GGTGAGCTGCACAATCAATC+AGG - chr1_2:70847055-70847074 None:intergenic 50.0%
! AATTTTCGCAGTTCCCACCG+CGG + chr1_2:70847609-70847628 Msa0089380:intron 50.0%
! TACATGTTTGGTTCCGCGGT+GGG - chr1_2:70847625-70847644 None:intergenic 50.0%
! AACAGCTTGATGAGCACTGC+GGG - chr1_2:70847772-70847791 None:intergenic 50.0%
! CAACAGCTTGATGAGCACTG+CGG - chr1_2:70847773-70847792 None:intergenic 50.0%
GTGCTCATCAAGCTGTTGCT+TGG + chr1_2:70847775-70847794 Msa0089380:CDS 50.0%
TCACCTTGCGCTTCTGTTTG+TGG + chr1_2:70847969-70847988 Msa0089380:intron 50.0%
TGAGAGGGAGGGAGTGAAAA+GGG + chr1_2:70849181-70849200 Msa0089380:intron 50.0%
GAGGGAGTGAAAAGGGGAAT+TGG + chr1_2:70849188-70849207 Msa0089380:intron 50.0%
TGAAAACCACTACGCCCAGT+TGG - chr1_2:70849789-70849808 None:intergenic 50.0%
GTCCCTTGATCCCAAGACTT+GGG + chr1_2:70850107-70850126 Msa0089380:CDS 50.0%
!! CGGTATTTTTCTGGGGGTCT+AGG - chr1_2:70850207-70850226 None:intergenic 50.0%
AAGAGGAGGGCTCTGCTATT+TGG + chr1_2:70850343-70850362 Msa0089380:CDS 50.0%
! TTCCGTTTGCTCTTGACTCG+AGG + chr1_2:70850856-70850875 Msa0089380:intron 50.0%
TTCTAGGCAGTGAAACCCTG+TGG + chr1_2:70851463-70851482 Msa0089380:intron 50.0%
GCAGGAATTAATGCGTCCAC+AGG - chr1_2:70851482-70851501 None:intergenic 50.0%
ATCTCTTCCAACAGCCATGC+AGG - chr1_2:70851500-70851519 None:intergenic 50.0%
TTCAGATTCTGATGCCTGGG+TGG - chr1_2:70852573-70852592 None:intergenic 50.0%
CCCAGGCATCAGAATCTGAA+TGG + chr1_2:70852573-70852592 Msa0089380:intron 50.0%
CCCATTCAGATTCTGATGCC+TGG - chr1_2:70852577-70852596 None:intergenic 50.0%
GGCATCAGAATCTGAATGGG+TGG + chr1_2:70852577-70852596 Msa0089380:intron 50.0%
! GATTTGTTCCCCCGCGTATA+AGG - chr1_2:70852885-70852904 None:intergenic 50.0%
ACCCCTAATGAGGGTTGACT+AGG + chr1_2:70853749-70853768 Msa0089380:intron 50.0%
CCACCTAGTCAACCCTCATT+AGG - chr1_2:70853755-70853774 None:intergenic 50.0%
CCTAATGAGGGTTGACTAGG+TGG + chr1_2:70853752-70853771 Msa0089380:intron 50.0%
GAGGGGTAAAGAATCTGCGT+AGG + chr1_2:70854527-70854546 Msa0089380:CDS 50.0%
! GAGCAAATCAGAGCTAGCCT+TGG + chr1_2:70854571-70854590 Msa0089380:CDS 50.0%
CAGTGTGCTGAGTGTGTTCA+TGG - chr1_2:70854894-70854913 None:intergenic 50.0%
CATGAACACACTCAGCACAC+TGG + chr1_2:70854892-70854911 Msa0089380:CDS 50.0%
GAACGGAGAGAGACTTCAGT+TGG + chr1_2:70855059-70855078 Msa0089380:intron 50.0%
GTGTCGCCCATAATCTAGCT+AGG + chr1_2:70855585-70855604 Msa0089380:intron 50.0%
AGCCGCCCTAGCTAGATTAT+GGG - chr1_2:70855594-70855613 None:intergenic 50.0%
ACCTGAGCACAAGACTGTGA+CGG - chr1_2:70855617-70855636 None:intergenic 50.0%
TGATAGGAACTCCGCAAGGA+TGG + chr1_2:70856342-70856361 Msa0089380:intron 50.0%
! CATACTAGTTTCAGGCCCCT+CGG - chr1_2:70856560-70856579 None:intergenic 50.0%
AACAGGTAGAACACGGGCAA+AGG - chr1_2:70856939-70856958 None:intergenic 50.0%
ACCATAGGTTGCCAATGCCT+AGG - chr1_2:70857049-70857068 None:intergenic 50.0%
ATTGGAGCGAGGAGAAGGAG+CGG - chr1_2:70846957-70846976 None:intergenic 55.0%
GAGCAATTGGAGCGAGGAGA+AGG - chr1_2:70846962-70846981 None:intergenic 55.0%
! GTACATGTTTGGTTCCGCGG+TGG - chr1_2:70847626-70847645 None:intergenic 55.0%
! ACAGCTTGATGAGCACTGCG+GGG - chr1_2:70847771-70847790 None:intergenic 55.0%
GTGAGAGGGAGGGAGTGAAA+AGG + chr1_2:70849180-70849199 Msa0089380:intron 55.0%
GAGAGGGAGGGAGTGAAAAG+GGG + chr1_2:70849182-70849201 Msa0089380:intron 55.0%
AGCCTAAGCCTGGAGCAATG+TGG + chr1_2:70849763-70849782 Msa0089380:CDS 55.0%
CTGGAGCAATGTGGCCAACT+GGG + chr1_2:70849772-70849791 Msa0089380:CDS 55.0%
GGTCCCTTGATCCCAAGACT+TGG + chr1_2:70850106-70850125 Msa0089380:CDS 55.0%
AAGAAGAGTGGGATGCCTCC+TGG + chr1_2:70850289-70850308 Msa0089380:CDS 55.0%
CACATGGAAAACCCTGCACG+AGG - chr1_2:70850316-70850335 None:intergenic 55.0%
! AGGAGGGCTCTGCTATTTGG+TGG + chr1_2:70850346-70850365 Msa0089380:CDS 55.0%
GGCCTCGAGTCAAGAGCAAA+CGG - chr1_2:70850861-70850880 None:intergenic 55.0%
CGCCCATAATCTAGCTAGGG+CGG + chr1_2:70855589-70855608 Msa0089380:intron 55.0%
GAGCCGCCCTAGCTAGATTA+TGG - chr1_2:70855595-70855614 None:intergenic 55.0%
! TCCGTCACAGTCTTGTGCTC+AGG + chr1_2:70855613-70855632 Msa0089380:intron 55.0%
TGGGTGATAGGAACTCCGCA+AGG + chr1_2:70856338-70856357 Msa0089380:intron 55.0%
CACATCATTCTTCGGCACCC+TGG - chr1_2:70856626-70856645 None:intergenic 55.0%
GGCAGTTGGAGAACATGGCA+CGG - chr1_2:70856901-70856920 None:intergenic 55.0%
GTCATGTGCAGCCTAGGCAT+TGG + chr1_2:70857035-70857054 Msa0089380:three_prime_UTR 55.0%
!! GCCTAGGCATTGGCAACCTA+TGG + chr1_2:70857045-70857064 Msa0089380:three_prime_UTR 55.0%
! TACGTTTGGTTTCGCGGCGG+CGG + chr1_2:70846621-70846640 Msa0089380:CDS 60.0%
CGGCGGCAAGGAATTCACAG+CGG + chr1_2:70846641-70846660 Msa0089380:CDS 60.0%
TTGGAGCGAGGAGAAGGAGC+GGG - chr1_2:70846956-70846975 None:intergenic 60.0%
CTGCGGGGAGGAGGACTATT+AGG - chr1_2:70847756-70847775 None:intergenic 60.0%
! AGGGTGTCCTGGTCCACGTT+CGG + chr1_2:70848118-70848137 Msa0089380:CDS 60.0%
CTGGTCCACGTTCGGGACAT+CGG + chr1_2:70848126-70848145 Msa0089380:CDS 60.0%
TCCACGTTCGGGACATCGGA+TGG + chr1_2:70848130-70848149 Msa0089380:CDS 60.0%
ACCATCCGATGTCCCGAACG+TGG - chr1_2:70848134-70848153 None:intergenic 60.0%
GGCCACATTGCTCCAGGCTT+AGG - chr1_2:70849768-70849787 None:intergenic 60.0%
CCAGTTGGCCACATTGCTCC+AGG - chr1_2:70849774-70849793 None:intergenic 60.0%
CCTGGAGCAATGTGGCCAAC+TGG + chr1_2:70849771-70849790 Msa0089380:CDS 60.0%
ATGTGGCCAACTGGGCGTAG+TGG + chr1_2:70849780-70849799 Msa0089380:CDS 60.0%
GAAAACCCTGCACGAGGACC+AGG - chr1_2:70850310-70850329 None:intergenic 60.0%
! TGATGAGCACTGCGGGGAGG+AGG - chr1_2:70847765-70847784 None:intergenic 65.0%
! GCTTGATGAGCACTGCGGGG+AGG - chr1_2:70847768-70847787 None:intergenic 65.0%
GGGTGTCCTGGTCCACGTTC+GGG + chr1_2:70848119-70848138 Msa0089380:CDS 65.0%
CGATGTCCCGAACGTGGACC+AGG - chr1_2:70848128-70848147 None:intergenic 65.0%
ATGCCTCCTGGTCCTCGTGC+AGG + chr1_2:70850301-70850320 Msa0089380:CDS 65.0%
TGCCTCCTGGTCCTCGTGCA+GGG + chr1_2:70850302-70850321 Msa0089380:CDS 65.0%
AACCCTGCACGAGGACCAGG+AGG - chr1_2:70850307-70850326 None:intergenic 65.0%
! GTTTGGTTTCGCGGCGGCGG+CGG + chr1_2:70846624-70846643 Msa0089380:CDS 70.0%
! GTTTCGCGGCGGCGGCGGCA+AGG + chr1_2:70846629-70846648 Msa0089380:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 70846555 70857173 70846555 ID=Msa0089380;Name=Msa0089380
chr1_2 mRNA 70846555 70857173 70846555 ID=Msa0089380-mRNA-1;Parent=Msa0089380;Name=Msa0089380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.94|0.95|1|0.94|0.9|20|541|669
chr1_2 exon 70846555 70846818 70846555 ID=Msa0089380-mRNA-1:exon:24394;Parent=Msa0089380-mRNA-1
chr1_2 exon 70846896 70846982 70846896 ID=Msa0089380-mRNA-1:exon:24395;Parent=Msa0089380-mRNA-1
chr1_2 exon 70847729 70847819 70847729 ID=Msa0089380-mRNA-1:exon:24396;Parent=Msa0089380-mRNA-1
chr1_2 exon 70847910 70847956 70847910 ID=Msa0089380-mRNA-1:exon:24397;Parent=Msa0089380-mRNA-1
chr1_2 exon 70848065 70848151 70848065 ID=Msa0089380-mRNA-1:exon:24398;Parent=Msa0089380-mRNA-1
chr1_2 exon 70848658 70848719 70848658 ID=Msa0089380-mRNA-1:exon:24399;Parent=Msa0089380-mRNA-1
chr1_2 exon 70849554 70849596 70849554 ID=Msa0089380-mRNA-1:exon:24400;Parent=Msa0089380-mRNA-1
chr1_2 exon 70849750 70849830 70849750 ID=Msa0089380-mRNA-1:exon:24401;Parent=Msa0089380-mRNA-1
chr1_2 exon 70850024 70850140 70850024 ID=Msa0089380-mRNA-1:exon:24402;Parent=Msa0089380-mRNA-1
chr1_2 exon 70850286 70850391 70850286 ID=Msa0089380-mRNA-1:exon:24403;Parent=Msa0089380-mRNA-1
chr1_2 exon 70850729 70850792 70850729 ID=Msa0089380-mRNA-1:exon:24404;Parent=Msa0089380-mRNA-1
chr1_2 exon 70851002 70851044 70851002 ID=Msa0089380-mRNA-1:exon:24405;Parent=Msa0089380-mRNA-1
chr1_2 exon 70851148 70851378 70851148 ID=Msa0089380-mRNA-1:exon:24406;Parent=Msa0089380-mRNA-1
chr1_2 exon 70851469 70851630 70851469 ID=Msa0089380-mRNA-1:exon:24407;Parent=Msa0089380-mRNA-1
chr1_2 exon 70852578 70852709 70852578 ID=Msa0089380-mRNA-1:exon:24408;Parent=Msa0089380-mRNA-1
chr1_2 exon 70854478 70854621 70854478 ID=Msa0089380-mRNA-1:exon:24409;Parent=Msa0089380-mRNA-1
chr1_2 exon 70854832 70854918 70854832 ID=Msa0089380-mRNA-1:exon:24410;Parent=Msa0089380-mRNA-1
chr1_2 exon 70856348 70856416 70856348 ID=Msa0089380-mRNA-1:exon:24411;Parent=Msa0089380-mRNA-1
chr1_2 exon 70856520 70856881 70856520 ID=Msa0089380-mRNA-1:exon:24412;Parent=Msa0089380-mRNA-1
chr1_2 exon 70856902 70857173 70856902 ID=Msa0089380-mRNA-1:exon:24413;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70846555 70846818 70846555 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70846896 70846982 70846896 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70847729 70847819 70847729 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70847910 70847956 70847910 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70848065 70848151 70848065 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70848658 70848719 70848658 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70849554 70849596 70849554 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70849750 70849830 70849750 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70850024 70850140 70850024 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70850286 70850391 70850286 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70850729 70850792 70850729 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70851002 70851044 70851002 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70851148 70851378 70851148 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70851469 70851630 70851469 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70852578 70852709 70852578 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70854478 70854621 70854478 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70854832 70854918 70854832 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70856348 70856416 70856348 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 CDS 70856520 70856612 70856520 ID=Msa0089380-mRNA-1:cds;Parent=Msa0089380-mRNA-1
chr1_2 three_prime_UTR 70856613 70856881 70856613 ID=Msa0089380-mRNA-1:three_prime_utr;Parent=Msa0089380-mRNA-1
chr1_2 three_prime_UTR 70856902 70857173 70856902 ID=Msa0089380-mRNA-1:three_prime_utr;Parent=Msa0089380-mRNA-1
Gene Sequence

>Msa0089380

ATAAATAAGAGAGAGAGGAGAGTGGAGAAGAGAGCGAGAGTGAGTGCAAAAACATCATTTCAATTCTACGTTTGGTTTCGCGGCGGCGGCGGCAAGGAATTCACAGCGGCGAAGAAGAAGAAGAAGAAGAAAATGGGGAAGAAAACAAAGAAAGTCGGCAAAGGCAAAGAGAAAACAGAGAAAAAAACCGCAAAAGCCGATATGAAACGAGCACGTAGGGAAGAAAAAAAGCTTTCTCCCGAAGATGATATTGACGCCATTCTCTTGAATATTCAAAAAGAGGAAGCTAAAAAGAAAGAAGTTCACGTTGAAGATAATGTTCCCGCTCCTTCTCCTCGCTCCAATTGCTCGCTGGAGTGGAAACTGATTTCGAGTCCTAATAGTCCTCCTCCCCGCAGTGCTCATCAAGCTGTTGCTTGGAAGAATTATGTTTATATTTTTGGTGGTGAATTTACATCTCCAAATCAAGAGAGGTTCCATCACTACAAGGATTTTTGGATGTTGGACCTGAAAACTAATCAGTGGGAACAACTTAATTTAAAAGGGTGTCCTGGTCCACGTTCGGGACATCGGATGGTATTATACAAGCACAAGATTATTCTTTTTGGTGGCTTTTATGATACACTTAGAGAAGTGAGGTACTACAATGATCTATTTGTATTTGACCTTGATCAATTTAAGTGGCAAGAAATAAAGCCTAAGCCTGGAGCAATGTGGCCAACTGGGCGTAGTGGTTTTCAATTATTTGTTTACCAAGATGATATTTTCTTATATGGTGGCTATTCAAAAGAAGTTTCATCGGACAAGAATGCCTCTGAGAAAGGAATTGTTCATTCAGATATGTGGTCCCTTGATCCCAAGACTTGGGAATGGAACAAGGTTAAGAAGAGTGGGATGCCTCCTGGTCCTCGTGCAGGGTTTTCCATGTGTGTTCATAAGAGGAGGGCTCTGCTATTTGGTGGTGTTGTGGATATAGAAGTTGAAGGCGATGCAATGATGAGCTTGTTCTTGAATGAGCTTTATGGCTTTCAGTTAGACACCAATCGCTGGTACCCTCTGGAGTTAAGAAAGGATAAATCAACAAAAGATAAGTTAAGAAAGACCGAACAAAATTGTACTAACGATGTCGACAAGAAGGCAGAACCACTATCTACTGCAAGAGATGAAGCTGAGGATATGGAATACGAAGAAAGCAGCATTAATGATATATCCCAGAATATTGCATCAAAGATTACCATTGCTGACAATGAAACACTTACCAAACCTGAAGGAAAGTCTAAGGAATCTGGTGCTAAATTCGACATTCAAAATTCTTTGCCCGAGGCAGTGAAACCCTGTGGACGCATTAATTCCTGCATGGCTGTTGGAAGAGATACACTATATATATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGACGACTTGTACTCTCTCAACCTTAGCAAACTTGATGAATGGAAGTGCATTATACCGGCATCAGAATCTGAATGGGTGGAAGTTTCAGAGGATGATGATGAAGAAAATGAAGATGATGATGACGATGATGAATCTAATAGTGATGGTACAAGTGAGGAGAACGAAGATGATGATGATGATGAGGAGGAGGTTCTGAATGCATCAGATCAAGTGGGAGATGCTGTAGCTTTAATCAAGGGAGGGGTAAAGAATCTGCGTAGGAAAGAAAGAAGGTCACGGATAGAGCAAATCAGAGCTAGCCTTGGCTTGTCAGATTCACAGAGAACACCATTGGCAGGTGAGTCCTTGAGAGATTTCTTTAAGCGTACAAATTTGTATTGGCAAATGGCAGCCCATGAACACACTCAGCACACTGGAAAAGAACTCCGCAAGGATGGTTTTGATCTTGCAGAAACACGATACAGGGAGCTAAAACCTATTCTTGACGAGCTGGCTTTATTAGAAGCTGAGCAGAAAGCTGAAGAGGCCGAGGGGCCTGAAACTAGTATGAAGAAAAGAGGCAAGAAGAAAACTAGAAATTGA
Protein sequence

>Msa0089380

INKRERRVEKRARVSAKTSFQFYVWFRGGGGKEFTAAKKKKKKKMGKKTKKVGKGKEKTEKKTAKADMKRARREEKKLSPEDDIDAILLNIQKEEAKKKEVHVEDNVPAPSPRSNCSLEWKLISSPNSPPPRSAHQAVAWKNYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPGPRSGHRMVLYKHKIILFGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPGAMWPTGRSGFQLFVYQDDIFLYGGYSKEVSSDKNASEKGIVHSDMWSLDPKTWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGGVVDIEVEGDAMMSLFLNELYGFQLDTNRWYPLELRKDKSTKDKLRKTEQNCTNDVDKKAEPLSTARDEAEDMEYEESSINDISQNIASKITIADNETLTKPEGKSKESGAKFDIQNSLPEAVKPCGRINSCMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEVSEDDDEENEDDDDDDESNSDGTSEENEDDDDDEEEVLNASDQVGDAVALIKGGVKNLRRKERRSRIEQIRASLGLSDSQRTPLAGESLRDFFKRTNLYWQMAAHEHTQHTGKELRKDGFDLAETRYRELKPILDELALLEAEQKAEEAEGPETSMKKRGKKKTRN*