AlfalfaGEDB | Msa0920770

M. sativa cultivar zhongmu-4 / Msa0920770

KEGG: K15803
GO: GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0019637 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045338 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576
PFAM: PF01397.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920770	XP_004497487.1	73.561	556	147	0	1	556	1	556	0.0	877

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920770	sp\|Q6Q3H3\|TPSGD_VITVI	52.593	540	252	1	17	556	22	557	0.0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0894080	Msa0920770	0.889751	1.828910e-73	-8.615850e-47
Msa0894100	Msa0920770	0.837519	4.955925e-57	-8.615850e-47
Msa0894130	Msa0920770	0.824108	9.648748e-54	-8.615850e-47
Msa0894190	Msa0920770	0.820030	8.506035e-53	-8.615850e-47
Msa0916290	Msa0920770	0.861487	9.912527e-64	-8.615850e-47
Msa0916310	Msa0920770	0.841038	6.052502e-58	-8.615850e-47
Msa0920680	Msa0920770	0.816852	4.467044e-52	-8.615850e-47
Msa0920710	Msa0920770	0.810447	1.147664e-50	-8.615850e-47
Msa0920720	Msa0920770	0.864051	1.606081e-64	-8.615850e-47
Msa0920760	Msa0920770	0.813461	2.529469e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0920770	MtrunA17_Chr7g0236991	70.324	556	162	1	1	556	1	553	831
Msa0920770	MtrunA17_Chr7g0237001	70.144	556	163	1	1	556	1	553	830
Msa0920770	MtrunA17_Chr7g0237041	70.144	556	163	1	1	556	1	553	830
Msa0920770	MtrunA17_Chr7g0237081	70.144	556	163	1	1	556	1	553	830
Msa0920770	MtrunA17_Chr7g0237051	70.144	556	163	1	1	556	1	553	830
Msa0920770	MtrunA17_Chr6g0466051	69.604	556	166	1	1	556	1	553	821
Msa0920770	MtrunA17_Chr6g0465911	69.424	556	167	1	1	556	1	553	819
Msa0920770	MtrunA17_Chr5g0425371	69.245	556	168	1	1	556	1	553	810
Msa0920770	MtrunA17_Chr6g0465441	67.806	556	176	1	1	556	1	553	800
Msa0920770	MtrunA17_Chr6g0451711	66.427	557	186	1	1	556	1	557	788

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920770	AT5G23960.2	38.645	546	330	4	13	556	3	545	2.62e-144	427
Msa0920770	AT5G23960.1	38.616	549	328	6	13	556	3	547	2.36e-143	425
Msa0920770	AT1G70080.1	36.625	557	343	7	8	556	57	611	2.28e-129	391
Msa0920770	AT3G14490.1	37.477	547	330	7	17	556	60	601	8.48e-126	382
Msa0920770	AT3G14520.1	36.229	541	335	5	22	556	68	604	5.63e-124	377
Msa0920770	AT1G31950.3	35.949	548	328	6	22	556	70	607	5.21e-122	372
Msa0920770	AT1G31950.1	36.229	541	335	5	22	556	70	606	6.14e-122	372
Msa0920770	AT3G14540.1	36.111	540	337	4	22	556	65	601	9.38e-121	369
Msa0920770	AT3G29410.1	34.991	543	347	5	17	556	64	603	1.55e-116	358
Msa0920770	AT5G44630.1	35.219	548	338	7	18	554	14	555	1.87e-115	353

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Find 87 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATTGACAACGCT+TGG	0.444020	6_2:-56259016	Msa0920770:CDS
AAACAGTTTGAGCAGAAAAG+AGG	0.539017	6_2:-56259113	Msa0920770:intron
AAACATATTGGAAGAGGCTT+TGG	0.373001	6_2:-56261048	Msa0920770:CDS
AACATTGGTCGTAGATGTTG+AGG	0.541350	6_2:-56261117	Msa0920770:CDS
AACCAATTCAAGGACGAGCA+AGG	0.615624	6_2:-56261152	Msa0920770:CDS
AAGAAGTCGTAGCCAACACT+GGG	0.613680	6_2:+56259360	None:intergenic
AATCCAAGCTTATATGAGTG+AGG	0.644710	6_2:-56259456	Msa0920770:CDS
AATCTCCCCAAACGCTAGGG+TGG	0.601357	6_2:+56262373	None:intergenic
ACACACGTCAGAATAGGTAA+CGG	0.688917	6_2:+56258954	None:intergenic
ACATTGGTCGTAGATGTTGA+GGG	0.633793	6_2:-56261116	Msa0920770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCAATCCTAATGAGAAAT+CGG	-	chr6_2:56258853-56258872	Msa0920770:CDS	30.0%
AATGTGAGTAACTTGAATCT+GGG	+	chr6_2:56259059-56259078	None:intergenic	30.0%
AAATGTGAGTAACTTGAATC+TGG	+	chr6_2:56259060-56259079	None:intergenic	30.0%
AGGAAACTTCAATGAAACAT+TGG	-	chr6_2:56260142-56260161	Msa0920770:CDS	30.0%
AATTTATCCATCTTCGATCT+TGG	-	chr6_2:56260941-56260960	Msa0920770:CDS	30.0%
TAAAGCAACTTCATGTAATC+CGG	+	chr6_2:56261111-56261130	None:intergenic	30.0%
TGGTTATCAAATGGAAGTTT+AGG	-	chr6_2:56261341-56261360	Msa0920770:intron	30.0%
AAACTGAGTTCATATAACCA+TGG	+	chr6_2:56261581-56261600	None:intergenic	30.0%
TAACTATATACCAACAACAG+AGG	-	chr6_2:56261857-56261876	Msa0920770:CDS	30.0%
CACATATCAACAATATCAAG+TGG	-	chr6_2:56261888-56261907	Msa0920770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	56258836	56262460	56258836	ID=Msa0920770;Name=Msa0920770
chr6_2	mRNA	56258836	56262460	56258836	ID=Msa0920770-mRNA-1;Parent=Msa0920770;Name=Msa0920770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|7\|0\|556
chr6_2	exon	56262344	56262460	56262344	ID=Msa0920770-mRNA-1:exon:8439;Parent=Msa0920770-mRNA-1
chr6_2	exon	56261798	56262077	56261798	ID=Msa0920770-mRNA-1:exon:8438;Parent=Msa0920770-mRNA-1
chr6_2	exon	56260810	56261182	56260810	ID=Msa0920770-mRNA-1:exon:8437;Parent=Msa0920770-mRNA-1
chr6_2	exon	56260488	56260706	56260488	ID=Msa0920770-mRNA-1:exon:8436;Parent=Msa0920770-mRNA-1
chr6_2	exon	56260078	56260216	56260078	ID=Msa0920770-mRNA-1:exon:8435;Parent=Msa0920770-mRNA-1
chr6_2	exon	56259241	56259489	56259241	ID=Msa0920770-mRNA-1:exon:8434;Parent=Msa0920770-mRNA-1
chr6_2	exon	56258836	56259129	56258836	ID=Msa0920770-mRNA-1:exon:8433;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56262344	56262460	56262344	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56261798	56262077	56261798	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56260810	56261182	56260810	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56260488	56260706	56260488	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56260078	56260216	56260078	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56259241	56259489	56259241	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1
chr6_2	CDS	56258836	56259129	56258836	ID=Msa0920770-mRNA-1:cds;Parent=Msa0920770-mRNA-1

Gene Sequence

>Msa0920770

ATGTCTTCAGTAGATTACATCAATCCTAATGAGAAATCGGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGAGATTTTTTCATTCCTTATGCTTCAGAATCTATGGAACCTGATATGAATATTGCCGCACAAATTGATCAACTAAAAAATGAGGTTAGACAAATAATTGTCTCAAAAACAGAGAAACCCTTGGAAAAAGTCAACTTGATTGATTCAATATGTCGTTTGGGCGTGAGCTATCATTTTGAAGACGAAATTAATCAAGTTTTGAAACATATTTACAAGAGTTATGTTCAAAATGGAGAAATAACTCTCAAAGACAACCTTCATTCTCTTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGACTTTACGTTTCACCAGATGTGTTCAACCAATTCAAGGACGAGCAAGGAAACTTCAATGAAACATTGGTCGTAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAAAACATATTGGAAGAGGCTTTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCATCCCAATTGAGTCCTTCTCTTGCAACAAAAGTAAAACAAAGCTTAAGACAATCTCTACGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTAGCAAGTGGTGGAAGGAGTTGGATATTGCTCAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACTGTATATTTTGAGCCTCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCGTTTTATCATACATTGATGACACATATGATGCATATGGAACTACTGATGAATTAGAACTTTTTACAAAGGCAATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACATGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAGATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATGCTAACTATATACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCGACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTCTTAATGCTGCTGCTATACATTGCAGGCTTAGGGATGAAATTGTGTCAAGTGAGTTTGAGCAGAAAAGAGGACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATAAATCATGAATGTCTTAAGCCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGCTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTCGTCAATCCTGTAGAAATTTGA

Protein sequence

>Msa0920770

MSSVDYINPNEKSVLQRNVADFHPSVWGDFFIPYASESMEPDMNIAAQIDQLKNEVRQIIVSKTEKPLEKVNLIDSICRLGVSYHFEDEINQVLKHIYKSYVQNGEITLKDNLHSLAVLFRVLRQHGLYVSPDVFNQFKDEQGNFNETLVVDVEGMLNLYEASHMMVHGENILEEALAFTSGHLESIASQLSPSLATKVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISVLSYIDDTYDAYGTTDELELFTKAIERWDINCLEDLPDYMKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYIPTTEEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKILNAAAIHCRLRDEIVSSEFEQKRGHVSSYLECYMREYDMNREAAIQECQKKIDNAWKDINHECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*