AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688620 MtrunA17_Chr5g0395821 99.119 454 4 0 1 454 1 454 0.0 937
Msa0688620 MtrunA17_Chr3g0098921 91.503 459 34 4 1 454 1 459 0.0 872
Msa0688620 MtrunA17_Chr7g0267961 75.223 448 105 5 12 454 11 457 0.0 707
Msa0688620 MtrunA17_Chr7g0233651 66.966 445 126 7 15 454 3 431 0.0 591
Msa0688620 MtrunA17_Chr7g0235181 65.011 443 135 7 14 454 2 426 0.0 563
Msa0688620 MtrunA17_Chr7g0234591 61.607 448 147 8 17 454 4 436 0.0 537
Msa0688620 MtrunA17_Chr7g0228191 71.160 319 90 1 124 440 13 331 9.00e-173 488
Msa0688620 MtrunA17_Chr2g0330681 54.499 389 149 9 25 408 4 369 2.49e-131 384
Msa0688620 MtrunA17_Chr2g0330601 58.055 329 106 4 126 452 71 369 2.64e-127 374
Msa0688620 MtrunA17_Chr4g0057131 41.611 447 218 9 11 433 29 456 3.72e-113 341
Msa0688620 MtrunA17_Chr3g0111961 53.618 304 133 4 126 429 168 463 1.18e-112 340
Msa0688620 MtrunA17_Chr2g0308501 49.840 313 147 5 123 430 4 311 1.03e-107 322
Msa0688620 MtrunA17_Chr2g0281451 27.386 241 156 9 140 374 18 245 1.23e-17 85.9
Msa0688620 MtrunA17_Chr6g0448921 26.891 238 155 9 140 371 19 243 2.76e-15 78.6
Msa0688620 MtrunA17_Chr5g0401671 23.630 292 162 8 143 426 312 550 6.54e-15 77.0
Msa0688620 MtrunA17_Chr4g0053651 26.336 262 168 11 177 427 287 534 2.15e-14 75.5
Msa0688620 MtrunA17_Chr1g0176241 27.778 252 152 11 182 426 253 481 2.81e-14 74.7
Msa0688620 MtrunA17_Chr1g0176241 25.510 294 156 10 182 428 122 399 1.17e-13 72.8
Msa0688620 MtrunA17_Chr5g0401661 23.121 346 192 10 83 426 367 640 1.35e-13 73.2
Msa0688620 MtrunA17_Chr3g0136971 24.194 310 192 9 155 434 326 622 1.22e-12 70.1
Msa0688620 MtrunA17_Chr3g0136971 27.273 198 129 7 150 345 434 618 2.14e-12 69.3
Msa0688620 MtrunA17_Chr1g0172501 24.000 300 173 10 178 433 271 559 2.52e-12 68.9
Msa0688620 MtrunA17_Chr3g0093681 24.000 300 173 10 178 433 271 559 9.88e-12 67.0
Msa0688620 MtrunA17_Chr5g0405851 27.374 179 118 5 166 342 240 408 2.00e-11 65.9
Msa0688620 MtrunA17_Chr7g0253861 22.857 210 150 4 220 427 53 252 5.46e-11 63.9
Msa0688620 MtrunA17_Chr1g0185501 26.768 198 128 6 150 341 126 312 6.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688620 AT4G33270.1 79.778 450 89 2 7 454 8 457 0.0 759
Msa0688620 AT4G33260.1 80.317 442 85 2 15 454 6 447 0.0 737
Msa0688620 AT4G33260.2 80.535 411 78 2 15 423 6 416 0.0 701
Msa0688620 AT5G27570.1 69.623 451 130 5 7 454 4 450 0.0 642
Msa0688620 AT5G27080.1 69.585 434 126 4 23 454 13 442 0.0 623
Msa0688620 AT5G26900.1 68.578 436 132 3 20 454 13 444 0.0 612
Msa0688620 AT5G27945.1 62.634 372 123 5 95 454 61 428 1.46e-162 466
Msa0688620 AT4G22910.1 42.822 411 217 4 33 433 62 464 3.39e-115 347
Msa0688620 AT5G13840.1 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa0688620 AT5G13840.2 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa0688620 AT4G11920.1 41.556 450 227 9 5 433 22 456 2.36e-110 334
Msa0688620 AT1G11160.4 29.101 189 119 7 159 345 40 215 3.86e-16 81.6
Msa0688620 AT1G11160.2 29.101 189 119 7 159 345 40 215 4.24e-16 81.6
Msa0688620 AT1G11160.1 29.101 189 119 7 159 345 40 215 4.36e-16 81.6
Msa0688620 AT5G08390.1 26.891 238 155 9 140 371 19 243 9.51e-16 80.5
Msa0688620 AT1G61210.3 26.201 229 141 8 138 351 6 221 1.51e-15 80.1
Msa0688620 AT1G61210.2 26.201 229 141 8 138 351 6 221 1.71e-15 79.7
Msa0688620 AT1G61210.1 26.201 229 141 8 138 351 6 221 1.72e-15 79.7
Msa0688620 AT1G11160.3 29.341 167 105 6 181 345 18 173 1.98e-15 79.3
Msa0688620 AT5G23430.1 27.189 217 140 8 140 351 19 222 1.36e-14 76.6
Msa0688620 AT5G23430.3 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa0688620 AT5G23430.2 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa0688620 AT5G52820.1 27.451 255 152 12 182 428 244 473 7.98e-14 73.9
Msa0688620 AT5G25150.1 26.000 300 183 10 155 428 329 615 2.42e-13 72.8
Msa0688620 AT5G25150.1 27.551 196 127 7 150 343 433 615 1.97e-11 66.6
Msa0688620 AT5G25150.2 26.000 300 183 10 155 428 329 615 2.88e-13 72.4
Msa0688620 AT5G25150.2 27.551 196 127 7 150 343 433 615 2.18e-11 66.6
Msa0688620 AT3G49660.1 23.922 255 175 9 178 426 71 312 7.49e-13 69.7
Msa0688620 AT3G49660.1 25.373 201 125 9 150 341 128 312 9.93e-11 63.2
Msa0688620 AT5G56130.1 23.077 208 117 4 259 427 16 219 1.06e-11 66.2
Msa0688620 AT5G67320.1 24.221 289 166 12 143 427 330 569 1.55e-11 67.0
Msa0688620 AT2G41500.1 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa0688620 AT2G41500.2 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa0688620 AT5G16750.1 25.238 210 144 7 149 354 32 232 1.90e-11 67.0
Msa0688620 AT2G32700.6 24.453 274 180 13 159 426 532 784 4.42e-11 65.9
Msa0688620 AT2G32700.2 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0688620 AT2G32700.5 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0688620 AT2G32700.1 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0688620 AT2G32700.4 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0688620 AT2G32700.3 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0688620 AT2G32700.7 24.453 274 180 13 159 426 553 805 5.19e-11 65.5
Msa0688620 AT5G13480.2 26.383 235 149 10 182 409 137 354 6.96e-11 65.1
Msa0688620 AT5G13480.4 26.383 235 149 10 182 409 114 331 8.20e-11 64.7
Msa0688620 AT5G13480.3 26.383 235 149 10 182 409 114 331 8.23e-11 64.7

Find 153 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCGCCTGGGCTTTA+TGG 0.172694 4_4:-54748591 None:intergenic
CAGACGAAACATTGAGGTTT+TGG 0.210103 4_4:+54749942 Msa0688620:CDS
AGATAGGAATTGTATGAATT+AGG 0.210843 4_4:-54747547 None:intergenic
TTTGAATGATGAGAGAAATA+AGG 0.244865 4_4:-54747587 None:intergenic
CTGGAAGGGGAGCACACTTC+TGG 0.268112 4_4:-54748431 None:intergenic
GATAGGAATTGTATGAATTA+GGG 0.295845 4_4:-54747546 None:intergenic
TTAAAACCCCAACAAATAAA+AGG 0.309977 4_4:+54750378 Msa0688620:three_prime_UTR
CTCTCTCTAACAATGGCTTC+AGG 0.319079 4_4:+54747799 Msa0688620:exon
CTATCTACGCGTTGCCTCAT+AGG 0.321314 4_4:-54750117 None:intergenic
ATGCGGCTCACATGTGAAAA+TGG 0.326418 4_4:-54750022 None:intergenic
GTTCTTGAAAGCTAGAATTC+TGG 0.331154 4_4:-54748501 None:intergenic
ATGATAATCTACTTTACATC+TGG 0.357040 4_4:+54749534 Msa0688620:CDS
GCGATCGAACAATCAAGTTT+TGG 0.357857 4_4:+54749687 Msa0688620:CDS
TAGCTTCCTGTACGCTTCTC+TGG 0.359002 4_4:-54748450 None:intergenic
AATGGCTCAGCTCTTGCTTT+CGG 0.359726 4_4:-54750004 None:intergenic
CCCTATCACATCTGTGAGTT+GGG 0.371621 4_4:+54749133 Msa0688620:CDS
CACTTCAAGAGTTCTTTATA+TGG 0.372662 4_4:+54749880 Msa0688620:CDS
TTGAATGATGAGAGAAATAA+GGG 0.380069 4_4:-54747586 None:intergenic
TCCATAGCAGGGAACATACT+TGG 0.385318 4_4:-54749754 None:intergenic
GTTGCCACTGTGCAACCATC+CGG 0.387110 4_4:-54749911 None:intergenic
AAATCCATCGCCGATCTATT+CGG 0.388532 4_4:-54748359 None:intergenic
GCTCCTGATGGGCGTCATAT+TGG 0.389395 4_4:+54749155 Msa0688620:CDS
CCTGAAGAGGAAAACGTGAT+TGG 0.389938 4_4:-54747849 None:intergenic
GGATACAGCTTCAGATAAAC+AGG 0.391975 4_4:+54749211 Msa0688620:CDS
CAGAGTCTTTAAACATGAAC+AGG 0.397977 4_4:+54748477 Msa0688620:CDS
GAACTTTGAAAGGTGGTCAT+AGG 0.402652 4_4:+54749330 Msa0688620:CDS
ATTACCTCAATTTATTAGAC+TGG 0.406978 4_4:+54749006 Msa0688620:CDS
CTGAAGAGGAAAACGTGATT+GGG 0.412005 4_4:-54747848 None:intergenic
TCTGCCATCTTCACCATTGA+AGG 0.425176 4_4:-54749845 None:intergenic
AAGAAGTTTGCGGATTGAAA+TGG 0.432752 4_4:+54749477 Msa0688620:CDS
CCCAAGTATGTTCCCTGCTA+TGG 0.435862 4_4:+54749753 Msa0688620:CDS
TAGGCAGCGAGTAGGGTCTT+TGG 0.438523 4_4:+54749349 Msa0688620:CDS
TAATAGTCATCCACAAGGTC+TGG 0.439377 4_4:-54748987 None:intergenic
TTTCATTCTTGTTCCATAGC+AGG 0.442202 4_4:-54749766 None:intergenic
CACAGAATCAGCTAACACTT+TGG 0.446675 4_4:+54749816 Msa0688620:CDS
GCCCAACTCACAGATGTGAT+AGG 0.447194 4_4:-54749134 None:intergenic
GCCCTATCACATCTGTGAGT+TGG 0.447852 4_4:+54749132 Msa0688620:CDS
CAAGGGAATTTGCTAGCTAC+TGG 0.450097 4_4:+54749653 Msa0688620:CDS
CTTGCTTGGTGTCCATTCCA+AGG 0.450852 4_4:+54749635 Msa0688620:CDS
CTCTGTAAGTGTTCCTGAAG+AGG 0.453227 4_4:-54747862 None:intergenic
TGCTTGAACTCGGTTGACAC+TGG 0.455069 4_4:+54749728 Msa0688620:CDS
TCATGAGGAATCAAATCAAC+TGG 0.456090 4_4:-54748536 None:intergenic
TTGGAAACACAGTGTATTTG+TGG 0.457657 4_4:+54749057 Msa0688620:CDS
TCTTTATATGGCGCAGAGCC+CGG 0.458141 4_4:+54749892 Msa0688620:CDS
AGAGATTATATATAGCAGAT+AGG 0.460787 4_4:-54747563 None:intergenic
GTACTTTACAGTGGAGTAAA+GGG 0.462572 4_4:-54750095 None:intergenic
CTCCTACACAGTGGCTTCAC+AGG 0.468541 4_4:+54749582 Msa0688620:CDS
TGGTGTGTGACTACGTCCAC+GGG 0.468941 4_4:-54750217 None:intergenic
TCAGACTTCTGAGAGGACTT+TGG 0.470401 4_4:+54748959 Msa0688620:intron
TCCTGTACGCTTCTCTGGAA+GGG 0.470590 4_4:-54748445 None:intergenic
GATGGGCGTCATATTGGCAT+TGG 0.470950 4_4:+54749161 Msa0688620:CDS
GGTACTTTACAGTGGAGTAA+AGG 0.472946 4_4:-54750096 None:intergenic
CTAGCTACTGGTGGAGGCAG+TGG 0.480596 4_4:+54749665 Msa0688620:CDS
CCGTGACGAACCACGTATAT+CGG 0.480622 4_4:+54750241 Msa0688620:three_prime_UTR
TTCATTCTTGTTCCATAGCA+GGG 0.481145 4_4:-54749765 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 4_4:+54749189 Msa0688620:CDS
ATGCCAATATGACGCCCATC+AGG 0.488601 4_4:-54749158 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 4_4:+54749832 Msa0688620:CDS
ATATCCTTCAATGGTGAAGA+TGG 0.498891 4_4:+54749841 Msa0688620:CDS
AACAACCACATACTCACAAC+CGG 0.499451 4_4:+54749377 Msa0688620:CDS
TGCTATGGAACAAGAATGAA+AGG 0.505330 4_4:+54749768 Msa0688620:CDS
TTCCTGTACGCTTCTCTGGA+AGG 0.508481 4_4:-54748446 None:intergenic
GTGGTGTGTGACTACGTCCA+CGG 0.509034 4_4:-54750218 None:intergenic
TTGCCACTGTGCAACCATCC+GGG 0.511124 4_4:-54749910 None:intergenic
CACCTGAGGAATAATTCGCC+TGG 0.512239 4_4:-54748600 None:intergenic
TTGCTTGGTGTCCATTCCAA+GGG 0.513094 4_4:+54749636 Msa0688620:CDS
TCTGTGAGTTGGGCTCCTGA+TGG 0.513830 4_4:+54749143 Msa0688620:CDS
CACCGGTGCATGCTTGAACT+CGG 0.514125 4_4:+54749718 Msa0688620:CDS
TTTCGATTATGCACACTACA+TGG 0.515001 4_4:+54748379 Msa0688620:CDS
CTGTGAGTTGGGCTCCTGAT+GGG 0.515660 4_4:+54749144 Msa0688620:CDS
CCCCTTCCAGAGAAGCGTAC+AGG 0.515877 4_4:+54748444 Msa0688620:CDS
CCGATATACGTGGTTCGTCA+CGG 0.520907 4_4:-54750241 None:intergenic
AGATCATACATCTGCAGTAA+AGG 0.521203 4_4:+54749610 Msa0688620:CDS
AGGGAGTTACTCAGCTCTCA+TGG 0.521335 4_4:+54749788 Msa0688620:CDS
CACACTACATGGTGACAGAA+GGG 0.522072 4_4:+54748390 Msa0688620:CDS
GGGCATGAACAAGAAGTTTG+CGG 0.522362 4_4:+54749467 Msa0688620:CDS
TAGATTATCATTCCCTCCAC+TGG 0.527433 4_4:-54749522 None:intergenic
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 4_4:+54749320 Msa0688620:intron
TTACCTCAATTTATTAGACT+GGG 0.529967 4_4:+54749007 Msa0688620:CDS
AATGTTCTTGCAATAGCACT+TGG 0.530924 4_4:+54749038 Msa0688620:CDS
CCTGTACGCTTCTCTGGAAG+GGG 0.531549 4_4:-54748444 None:intergenic
ACCCCAACAAATAAAAGGAA+TGG 0.535284 4_4:+54750383 Msa0688620:three_prime_UTR
GCCCAGGCGAATTATTCCTC+AGG 0.535877 4_4:+54748598 Msa0688620:CDS
ACCTGAGGAATAATTCGCCT+GGG 0.538294 4_4:-54748599 None:intergenic
GACAGAAGGGGCTAAAGGTA+AGG 0.539789 4_4:+54748403 Msa0688620:CDS
ATGGTGACAGAAGGGGCTAA+AGG 0.542605 4_4:+54748398 Msa0688620:CDS
GCTAGCAAATTCCCTTGGAA+TGG 0.543063 4_4:-54749647 None:intergenic
GCTTGAACTCGGTTGACACT+GGG 0.546774 4_4:+54749729 Msa0688620:CDS
TTTGGACGCTCCAGACCTTG+TGG 0.549436 4_4:+54748977 Msa0688620:CDS
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 4_4:+54749190 Msa0688620:CDS
CTGCAGTAAAGGCTCTTGCT+TGG 0.552397 4_4:+54749621 Msa0688620:CDS
GTGGTCATAGGCAGCGAGTA+GGG 0.553407 4_4:+54749342 Msa0688620:CDS
GGAATCAAATCAACTGGAGT+AGG 0.555155 4_4:-54748530 None:intergenic
GTTCAAGCATGCACCGGTGT+GGG 0.559486 4_4:-54749714 None:intergenic
GTGAAGATGGCAGAGCTCAA+TGG 0.559588 4_4:+54749854 Msa0688620:CDS
TGATAATCTACTTTACATCT+GGG 0.563072 4_4:+54749535 Msa0688620:CDS
ATATTTGGGGACTGAATGAG+AGG 0.567505 4_4:-54750323 None:intergenic
CCCAACTCACAGATGTGATA+GGG 0.567907 4_4:-54749133 None:intergenic
GCACACTACATGGTGACAGA+AGG 0.570973 4_4:+54748389 Msa0688620:CDS
CTACTTTACATCTGGGACAG+AGG 0.574017 4_4:+54749542 Msa0688620:CDS
TTCCCCAGTCTAATAAATTG+AGG 0.574191 4_4:-54749010 None:intergenic
GGCAACGCGTAGATAGAAGA+TGG 0.575004 4_4:+54750124 Msa0688620:three_prime_UTR
CATACTCACAACCGGAGGGA+TGG 0.577159 4_4:+54749385 Msa0688620:CDS
GATGATGAAGTAAGCTCATG+AGG 0.578213 4_4:-54748551 None:intergenic
TCCCTCCGGTTGTGAGTATG+TGG 0.579028 4_4:-54749382 None:intergenic
TATATGGCGCAGAGCCCGGA+TGG 0.579495 4_4:+54749896 Msa0688620:CDS
CGATATACGTGGTTCGTCAC+GGG 0.579804 4_4:-54750240 None:intergenic
TCCACTGTAAAGTACCTATG+AGG 0.581940 4_4:+54750103 Msa0688620:three_prime_UTR
CAGATTTATACCGAATAGAT+CGG 0.585167 4_4:+54748349 Msa0688620:CDS
TATTTGTGGGATGCATCAAA+TGG 0.585182 4_4:+54749071 Msa0688620:CDS
CAGTAGCTAGCAAATTCCCT+TGG 0.590454 4_4:-54749652 None:intergenic
CTCACAACCGGAGGGATGGA+CGG 0.590810 4_4:+54749389 Msa0688620:CDS
AACCGAGTTCAAGCATGCAC+CGG 0.591621 4_4:-54749720 None:intergenic
TGGAAACACAGTGTATTTGT+GGG 0.594599 4_4:+54749058 Msa0688620:CDS
GGTGGTCATAGGCAGCGAGT+AGG 0.596714 4_4:+54749341 Msa0688620:CDS
AATTTGCTAGCTACTGGTGG+AGG 0.597622 4_4:+54749659 Msa0688620:CDS
CAGCAGCAGACGAAACATTG+AGG 0.598798 4_4:+54749936 Msa0688620:CDS
GGGAATTTGCTAGCTACTGG+TGG 0.599431 4_4:+54749656 Msa0688620:CDS
TATACCGAATAGATCGGCGA+TGG 0.599857 4_4:+54748355 Msa0688620:CDS
ATCAAATCAACTGGAGTAGG+TGG 0.601482 4_4:-54748527 None:intergenic
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 4_4:+54749354 Msa0688620:CDS
TAACACGTTACAATGTACAT+AGG 0.602945 4_4:-54750166 None:intergenic
GGATTGAAATGGTCGGCTAA+CGG 0.603805 4_4:+54749488 Msa0688620:CDS
AGTTCAAGCATGCACCGGTG+TGG 0.604168 4_4:-54749715 None:intergenic
ATGTTACTGCTTAGCGAATG+CGG 0.605647 4_4:-54750039 None:intergenic
GTAAAGGGCAGAAAATAACT+TGG 0.606742 4_4:-54750080 None:intergenic
AAGATAAAACCATAAAGCCC+AGG 0.612129 4_4:+54748582 Msa0688620:CDS
CCATAGCAGGGAACATACTT+GGG 0.613427 4_4:-54749753 None:intergenic
AGGGCCGTCTTCTTCTTCGA+CGG 0.614774 4_4:-54749114 None:intergenic
AAGTGCTATTGCAAGAACAT+TGG 0.617527 4_4:-54749036 None:intergenic
CAGTTGAGAACTTTGAAAGG+TGG 0.617886 4_4:+54749323 Msa0688620:intron
GTCAACAATTAGCCAGTGGA+GGG 0.619435 4_4:+54749510 Msa0688620:CDS
GGTCAACAATTAGCCAGTGG+AGG 0.633558 4_4:+54749509 Msa0688620:CDS
TACCTCAATTTATTAGACTG+GGG 0.642053 4_4:+54749008 Msa0688620:CDS
GCTATGGAACAAGAATGAAA+GGG 0.642631 4_4:+54749769 Msa0688620:CDS
ACCACATACTCACAACCGGA+GGG 0.650856 4_4:+54749381 Msa0688620:CDS
GCCTCATAGGTACTTTACAG+TGG 0.657693 4_4:-54750104 None:intergenic
TATACGTGGTTCGTCACGGG+TGG 0.660616 4_4:-54750237 None:intergenic
ACAACACATGATTTGCCCCG+TGG 0.662203 4_4:+54750201 Msa0688620:three_prime_UTR
AGCCTGTGAAGCCACTGTGT+AGG 0.662766 4_4:-54749584 None:intergenic
ACACTACATGGTGACAGAAG+GGG 0.666148 4_4:+54748391 Msa0688620:CDS
AACGGTCAACAATTAGCCAG+TGG 0.669539 4_4:+54749506 Msa0688620:CDS
CTTACAGAGAAAGAGTTCCA+AGG 0.680127 4_4:+54747876 Msa0688620:CDS
GTTACCGTCGAAGAAGAAGA+CGG 0.688864 4_4:+54749110 Msa0688620:CDS
ACATTGTTGAAACATACAGA+GGG 0.688874 4_4:+54749447 Msa0688620:CDS
AACCACATACTCACAACCGG+AGG 0.695066 4_4:+54749380 Msa0688620:CDS
CACATTGTTGAAACATACAG+AGG 0.702329 4_4:+54749446 Msa0688620:CDS
AGTTTGCGGATTGAAATGGT+CGG 0.710202 4_4:+54749481 Msa0688620:CDS
TGAGGTAATAGTCATCCACA+AGG 0.712406 4_4:-54748992 None:intergenic
AGAACAAAGACCGATATACG+TGG 0.737164 4_4:-54750251 None:intergenic
GGTGTGTGACTACGTCCACG+GGG 0.745352 4_4:-54750216 None:intergenic
CTTCTAGTTCTCCTACACAG+TGG 0.755247 4_4:+54749573 Msa0688620:CDS
GAGCCCGGATGGTTGCACAG+TGG 0.763260 4_4:+54749907 Msa0688620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATAAATTTTGAAATTT+TGG + chr4_4:54748026-54748045 Msa0688620:intron 10.0%
!!! AGAATAAATTTTGAAATTTT+GGG + chr4_4:54748027-54748046 Msa0688620:intron 10.0%
!!! TTGTGAATAAATTTTAAAAT+TGG + chr4_4:54748062-54748081 Msa0688620:intron 10.0%
!!! TGTGAATAAATTTTAAAATT+GGG + chr4_4:54748063-54748082 Msa0688620:intron 10.0%
!! TTTATTAATTCTTAGTTAAA+AGG + chr4_4:54748743-54748762 Msa0688620:intron 10.0%
!! TTATTAATTCTTAGTTAAAA+GGG + chr4_4:54748744-54748763 Msa0688620:intron 10.0%
!!! TGATATGTTTTTATATATTT+GGG - chr4_4:54750340-54750359 None:intergenic 10.0%
!!! GGATTTTAATTATCAAATTT+TGG + chr4_4:54747961-54747980 Msa0688620:intron 15.0%
!!! GAATAAATTTTGAAATTTTG+GGG + chr4_4:54748028-54748047 Msa0688620:intron 15.0%
!!! AATAAATTTTGAAATTTTGG+GGG + chr4_4:54748029-54748048 Msa0688620:intron 15.0%
!! AATAACAATGATAAAACATA+AGG - chr4_4:54748650-54748669 None:intergenic 15.0%
!!! ATGTTTTATCATTGTTATTT+TGG + chr4_4:54748651-54748670 Msa0688620:intron 15.0%
!! ACTCATTCAAAATTTAAATT+TGG - chr4_4:54748696-54748715 None:intergenic 15.0%
!!! GATATGTTTTTATATATTTG+GGG - chr4_4:54750339-54750358 None:intergenic 15.0%
!!! CTGATATGTTTTTATATATT+TGG - chr4_4:54750341-54750360 None:intergenic 15.0%
!! TATTCAGATCTTTCAAAATT+AGG + chr4_4:54747922-54747941 Msa0688620:intron 20.0%
!! ATTCAGATCTTTCAAAATTA+GGG + chr4_4:54747923-54747942 Msa0688620:intron 20.0%
!!! ATTAGGGTTTTAATGTAAAT+TGG + chr4_4:54747939-54747958 Msa0688620:intron 20.0%
!!! TTAGGGTTTTAATGTAAATT+GGG + chr4_4:54747940-54747959 Msa0688620:intron 20.0%
!!! ATTATCAAATTTTGGTGTTT+TGG + chr4_4:54747969-54747988 Msa0688620:intron 20.0%
!!! GGATTTTTAATTTTCGAATT+GGG + chr4_4:54748084-54748103 Msa0688620:intron 20.0%
!!! GATTTTTAATTTTCGAATTG+GGG + chr4_4:54748085-54748104 Msa0688620:intron 20.0%
!!! ATTTTTAATTTTCGAATTGG+GGG + chr4_4:54748086-54748105 Msa0688620:intron 20.0%
!! CACAAAATTGCAAAATATTA+TGG - chr4_4:54748916-54748935 None:intergenic 20.0%
! AGAGATTATATATAGCAGAT+AGG - chr4_4:54747566-54747585 None:intergenic 25.0%
! TTGAATGATGAGAGAAATAA+GGG - chr4_4:54747589-54747608 None:intergenic 25.0%
! TTTGAATGATGAGAGAAATA+AGG - chr4_4:54747590-54747609 None:intergenic 25.0%
!! TCTAATTCATTTCTTTTGCA+GGG + chr4_4:54747696-54747715 Msa0688620:five_prime_UTR 25.0%
!! AAATGTTCTTACATTTTCCT+TGG - chr4_4:54747896-54747915 None:intergenic 25.0%
! TTAGACTACTAATCCAATTA+TGG - chr4_4:54747995-54748014 None:intergenic 25.0%
!!! GGGATTTTTAATTTTCGAAT+TGG + chr4_4:54748083-54748102 Msa0688620:intron 25.0%
! AACTCAGTCAATAAAAAGTT+TGG - chr4_4:54748234-54748253 None:intergenic 25.0%
!!! TCATTGTTATTTTGGTTCTT+TGG + chr4_4:54748659-54748678 Msa0688620:intron 25.0%
!!! AATGAGTTTTGAAAATCAAG+TGG + chr4_4:54748709-54748728 Msa0688620:intron 25.0%
!!! ATGAGTTTTGAAAATCAAGT+GGG + chr4_4:54748710-54748729 Msa0688620:intron 25.0%
!!! TTAGGTTTTTGAAATTCAAG+TGG + chr4_4:54748834-54748853 Msa0688620:intron 25.0%
! ATTACCTCAATTTATTAGAC+TGG + chr4_4:54749006-54749025 Msa0688620:CDS 25.0%
! TTACCTCAATTTATTAGACT+GGG + chr4_4:54749007-54749026 Msa0688620:CDS 25.0%
!! TAGTTCATAAAGGTGTATTA+AGG - chr4_4:54749258-54749277 None:intergenic 25.0%
!! AGGAATTTGATAGTTCATAA+AGG - chr4_4:54749268-54749287 None:intergenic 25.0%
! AAACCAAACAAGAATAATGT+TGG - chr4_4:54749300-54749319 None:intergenic 25.0%
! ATGATAATCTACTTTACATC+TGG + chr4_4:54749534-54749553 Msa0688620:CDS 25.0%
! TGATAATCTACTTTACATCT+GGG + chr4_4:54749535-54749554 Msa0688620:CDS 25.0%
! TTAAAACCCCAACAAATAAA+AGG + chr4_4:54750378-54750397 Msa0688620:three_prime_UTR 25.0%
!!! TTCCATTCCTTTTATTTGTT+GGG - chr4_4:54750388-54750407 None:intergenic 25.0%
!!! ATTCCATTCCTTTTATTTGT+TGG - chr4_4:54750389-54750408 None:intergenic 25.0%
! GTCTAATTCATTTCTTTTGC+AGG + chr4_4:54747695-54747714 Msa0688620:five_prime_UTR 30.0%
! TTCTTTTCTCTCTCTAACAA+TGG + chr4_4:54747792-54747811 Msa0688620:exon 30.0%
CAGATTTATACCGAATAGAT+CGG + chr4_4:54748349-54748368 Msa0688620:CDS 30.0%
CTTAGTTAAAAGGGTTTGTA+TGG + chr4_4:54748753-54748772 Msa0688620:intron 30.0%
!! TCTTAGTTGAAAGTGTTGTA+TGG + chr4_4:54748877-54748896 Msa0688620:intron 30.0%
TACCTCAATTTATTAGACTG+GGG + chr4_4:54749008-54749027 Msa0688620:CDS 30.0%
TTGCCAACATTATTCTTGTT+TGG + chr4_4:54749294-54749313 Msa0688620:intron 30.0%
ACATTGTTGAAACATACAGA+GGG + chr4_4:54749447-54749466 Msa0688620:CDS 30.0%
! ACTTTGGAAATATCCTTCAA+TGG + chr4_4:54749832-54749851 Msa0688620:CDS 30.0%
CACTTCAAGAGTTCTTTATA+TGG + chr4_4:54749880-54749899 Msa0688620:CDS 30.0%
TAACACGTTACAATGTACAT+AGG - chr4_4:54750169-54750188 None:intergenic 30.0%
!!! TTTTAAAGTGAGCAAGCAAA+GGG - chr4_4:54750282-54750301 None:intergenic 30.0%
!!! TTTTTAAAGTGAGCAAGCAA+AGG - chr4_4:54750283-54750302 None:intergenic 30.0%
! GCTTGCTCACTTTAAAAATA+TGG + chr4_4:54750285-54750304 Msa0688620:three_prime_UTR 30.0%
!! TCCATTCCTTTTATTTGTTG+GGG - chr4_4:54750387-54750406 None:intergenic 30.0%
!! AAAACGTGATTGGGTTTTGA+TGG - chr4_4:54747842-54747861 None:intergenic 35.0%
!!! TTTGGTGTTTTGGCCATAAT+TGG + chr4_4:54747979-54747998 Msa0688620:intron 35.0%
!! TTGATTTGTTTGTTGCCAGT+TGG + chr4_4:54748325-54748344 Msa0688620:intron 35.0%
TTTCGATTATGCACACTACA+TGG + chr4_4:54748379-54748398 Msa0688620:CDS 35.0%
CAGAGTCTTTAAACATGAAC+AGG + chr4_4:54748477-54748496 Msa0688620:CDS 35.0%
GTTCTTGAAAGCTAGAATTC+TGG - chr4_4:54748504-54748523 None:intergenic 35.0%
TCATGAGGAATCAAATCAAC+TGG - chr4_4:54748539-54748558 None:intergenic 35.0%
AAGATAAAACCATAAAGCCC+AGG + chr4_4:54748582-54748601 Msa0688620:CDS 35.0%
!! TGTGCTAGTTGATGATTAGT+TGG + chr4_4:54748803-54748822 Msa0688620:intron 35.0%
! GATTAGTTGGCTATCTGATT+AGG + chr4_4:54748816-54748835 Msa0688620:intron 35.0%
!! TTGTTTTTCAGACTTCTGAG+AGG + chr4_4:54748952-54748971 Msa0688620:intron 35.0%
TTCCCCAGTCTAATAAATTG+AGG - chr4_4:54749013-54749032 None:intergenic 35.0%
! AAGTGCTATTGCAAGAACAT+TGG - chr4_4:54749039-54749058 None:intergenic 35.0%
AATGTTCTTGCAATAGCACT+TGG + chr4_4:54749038-54749057 Msa0688620:CDS 35.0%
TTGGAAACACAGTGTATTTG+TGG + chr4_4:54749057-54749076 Msa0688620:CDS 35.0%
TGGAAACACAGTGTATTTGT+GGG + chr4_4:54749058-54749077 Msa0688620:CDS 35.0%
TATTTGTGGGATGCATCAAA+TGG + chr4_4:54749071-54749090 Msa0688620:CDS 35.0%
! AACAGGTTTTTACACTTACC+TGG + chr4_4:54749228-54749247 Msa0688620:intron 35.0%
AAGGTGTATTAAGGTTAACC+AGG - chr4_4:54749249-54749268 None:intergenic 35.0%
AATAATGTTGGCAAACTAGC+AGG - chr4_4:54749288-54749307 None:intergenic 35.0%
CACATTGTTGAAACATACAG+AGG + chr4_4:54749446-54749465 Msa0688620:CDS 35.0%
! AAGAAGTTTGCGGATTGAAA+TGG + chr4_4:54749477-54749496 Msa0688620:CDS 35.0%
AGATCATACATCTGCAGTAA+AGG + chr4_4:54749610-54749629 Msa0688620:CDS 35.0%
TTCATTCTTGTTCCATAGCA+GGG - chr4_4:54749768-54749787 None:intergenic 35.0%
TTTCATTCTTGTTCCATAGC+AGG - chr4_4:54749769-54749788 None:intergenic 35.0%
TGCTATGGAACAAGAATGAA+AGG + chr4_4:54749768-54749787 Msa0688620:CDS 35.0%
GCTATGGAACAAGAATGAAA+GGG + chr4_4:54749769-54749788 Msa0688620:CDS 35.0%
ATATCCTTCAATGGTGAAGA+TGG + chr4_4:54749841-54749860 Msa0688620:CDS 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG + chr4_4:54749953-54749972 Msa0688620:CDS 35.0%
GTAAAGGGCAGAAAATAACT+TGG - chr4_4:54750083-54750102 None:intergenic 35.0%
GTACTTTACAGTGGAGTAAA+GGG - chr4_4:54750098-54750117 None:intergenic 35.0%
ACCCCAACAAATAAAAGGAA+TGG + chr4_4:54750383-54750402 Msa0688620:three_prime_UTR 35.0%
CTGAAGAGGAAAACGTGATT+GGG - chr4_4:54747851-54747870 None:intergenic 40.0%
CTTACAGAGAAAGAGTTCCA+AGG + chr4_4:54747876-54747895 Msa0688620:CDS 40.0%
! TTGGGGGTTTTCTTAGATTG+TGG + chr4_4:54748045-54748064 Msa0688620:intron 40.0%
TCGGTATAAATCTGTCCAAC+TGG - chr4_4:54748343-54748362 None:intergenic 40.0%
AAATCCATCGCCGATCTATT+CGG - chr4_4:54748362-54748381 None:intergenic 40.0%
ATCAAATCAACTGGAGTAGG+TGG - chr4_4:54748530-54748549 None:intergenic 40.0%
GGAATCAAATCAACTGGAGT+AGG - chr4_4:54748533-54748552 None:intergenic 40.0%
GATGATGAAGTAAGCTCATG+AGG - chr4_4:54748554-54748573 None:intergenic 40.0%
AATAATTCGCCTGGGCTTTA+TGG - chr4_4:54748594-54748613 None:intergenic 40.0%
AGATTTCAGTAAGACACCTG+AGG - chr4_4:54748617-54748636 None:intergenic 40.0%
TAATAGTCATCCACAAGGTC+TGG - chr4_4:54748990-54749009 None:intergenic 40.0%
TGAGGTAATAGTCATCCACA+AGG - chr4_4:54748995-54749014 None:intergenic 40.0%
GGATACAGCTTCAGATAAAC+AGG + chr4_4:54749211-54749230 Msa0688620:CDS 40.0%
CTGCAGTTGAGAACTTTGAA+AGG + chr4_4:54749320-54749339 Msa0688620:intron 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG + chr4_4:54749323-54749342 Msa0688620:intron 40.0%
! GAACTTTGAAAGGTGGTCAT+AGG + chr4_4:54749330-54749349 Msa0688620:CDS 40.0%
AACAACCACATACTCACAAC+CGG + chr4_4:54749377-54749396 Msa0688620:CDS 40.0%
! AGTTTGCGGATTGAAATGGT+CGG + chr4_4:54749481-54749500 Msa0688620:CDS 40.0%
TAGATTATCATTCCCTCCAC+TGG - chr4_4:54749525-54749544 None:intergenic 40.0%
! GCGATCGAACAATCAAGTTT+TGG + chr4_4:54749687-54749706 Msa0688620:CDS 40.0%
!!! AAGTTTTGGAATACCCACAC+CGG + chr4_4:54749701-54749720 Msa0688620:CDS 40.0%
CACAGAATCAGCTAACACTT+TGG + chr4_4:54749816-54749835 Msa0688620:CDS 40.0%
! CAGACGAAACATTGAGGTTT+TGG + chr4_4:54749942-54749961 Msa0688620:CDS 40.0%
ATGTTACTGCTTAGCGAATG+CGG - chr4_4:54750042-54750061 None:intergenic 40.0%
GGTACTTTACAGTGGAGTAA+AGG - chr4_4:54750099-54750118 None:intergenic 40.0%
! TCCACTGTAAAGTACCTATG+AGG + chr4_4:54750103-54750122 Msa0688620:three_prime_UTR 40.0%
AGAACAAAGACCGATATACG+TGG - chr4_4:54750254-54750273 None:intergenic 40.0%
ATATTTGGGGACTGAATGAG+AGG - chr4_4:54750326-54750345 None:intergenic 40.0%
CTCTCTCTAACAATGGCTTC+AGG + chr4_4:54747799-54747818 Msa0688620:exon 45.0%
!! ACGTGATTGGGTTTTGATGG+CGG - chr4_4:54747839-54747858 None:intergenic 45.0%
CCTGAAGAGGAAAACGTGAT+TGG - chr4_4:54747852-54747871 None:intergenic 45.0%
! CCAATCACGTTTTCCTCTTC+AGG + chr4_4:54747849-54747868 Msa0688620:CDS 45.0%
CTCTGTAAGTGTTCCTGAAG+AGG - chr4_4:54747865-54747884 None:intergenic 45.0%
TATACCGAATAGATCGGCGA+TGG + chr4_4:54748355-54748374 Msa0688620:CDS 45.0%
CACACTACATGGTGACAGAA+GGG + chr4_4:54748390-54748409 Msa0688620:CDS 45.0%
ACACTACATGGTGACAGAAG+GGG + chr4_4:54748391-54748410 Msa0688620:CDS 45.0%
ACCTGAGGAATAATTCGCCT+GGG - chr4_4:54748602-54748621 None:intergenic 45.0%
! TCAGACTTCTGAGAGGACTT+TGG + chr4_4:54748959-54748978 Msa0688620:intron 45.0%
GTTACCGTCGAAGAAGAAGA+CGG + chr4_4:54749110-54749129 Msa0688620:CDS 45.0%
CCCAACTCACAGATGTGATA+GGG - chr4_4:54749136-54749155 None:intergenic 45.0%
CCCTATCACATCTGTGAGTT+GGG + chr4_4:54749133-54749152 Msa0688620:CDS 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG + chr4_4:54749189-54749208 Msa0688620:CDS 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG + chr4_4:54749190-54749209 Msa0688620:CDS 45.0%
! AATTTTACCGTCCATCCCTC+CGG - chr4_4:54749399-54749418 None:intergenic 45.0%
GGGCATGAACAAGAAGTTTG+CGG + chr4_4:54749467-54749486 Msa0688620:CDS 45.0%
GGATTGAAATGGTCGGCTAA+CGG + chr4_4:54749488-54749507 Msa0688620:CDS 45.0%
AACGGTCAACAATTAGCCAG+TGG + chr4_4:54749506-54749525 Msa0688620:CDS 45.0%
GTCAACAATTAGCCAGTGGA+GGG + chr4_4:54749510-54749529 Msa0688620:CDS 45.0%
! CTACTTTACATCTGGGACAG+AGG + chr4_4:54749542-54749561 Msa0688620:CDS 45.0%
!! CTTCTAGTTCTCCTACACAG+TGG + chr4_4:54749573-54749592 Msa0688620:CDS 45.0%
!! TTGCTTGGTGTCCATTCCAA+GGG + chr4_4:54749636-54749655 Msa0688620:CDS 45.0%
GCTAGCAAATTCCCTTGGAA+TGG - chr4_4:54749650-54749669 None:intergenic 45.0%
CAGTAGCTAGCAAATTCCCT+TGG - chr4_4:54749655-54749674 None:intergenic 45.0%
!! CAAGGGAATTTGCTAGCTAC+TGG + chr4_4:54749653-54749672 Msa0688620:CDS 45.0%
!! AATTTGCTAGCTACTGGTGG+AGG + chr4_4:54749659-54749678 Msa0688620:CDS 45.0%
CCATAGCAGGGAACATACTT+GGG - chr4_4:54749756-54749775 None:intergenic 45.0%
TCCATAGCAGGGAACATACT+TGG - chr4_4:54749757-54749776 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG - chr4_4:54749848-54749867 None:intergenic 45.0%
! GCAGCTTTTGCTACTACTTC+TGG - chr4_4:54749983-54750002 None:intergenic 45.0%
AATGGCTCAGCTCTTGCTTT+CGG - chr4_4:54750007-54750026 None:intergenic 45.0%
ATGCGGCTCACATGTGAAAA+TGG - chr4_4:54750025-54750044 None:intergenic 45.0%
GCCTCATAGGTACTTTACAG+TGG - chr4_4:54750107-54750126 None:intergenic 45.0%
!! CGTGATTGGGTTTTGATGGC+GGG - chr4_4:54747838-54747857 None:intergenic 50.0%
GCACACTACATGGTGACAGA+AGG + chr4_4:54748389-54748408 Msa0688620:CDS 50.0%
ATGGTGACAGAAGGGGCTAA+AGG + chr4_4:54748398-54748417 Msa0688620:CDS 50.0%
GACAGAAGGGGCTAAAGGTA+AGG + chr4_4:54748403-54748422 Msa0688620:CDS 50.0%
! TCCTGTACGCTTCTCTGGAA+GGG - chr4_4:54748448-54748467 None:intergenic 50.0%
TTCCTGTACGCTTCTCTGGA+AGG - chr4_4:54748449-54748468 None:intergenic 50.0%
TAGCTTCCTGTACGCTTCTC+TGG - chr4_4:54748453-54748472 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+TGG - chr4_4:54748603-54748622 None:intergenic 50.0%
GCCCTATCACATCTGTGAGT+TGG + chr4_4:54749132-54749151 Msa0688620:CDS 50.0%
GCCCAACTCACAGATGTGAT+AGG - chr4_4:54749137-54749156 None:intergenic 50.0%
ATGCCAATATGACGCCCATC+AGG - chr4_4:54749161-54749180 None:intergenic 50.0%
GATGGGCGTCATATTGGCAT+TGG + chr4_4:54749161-54749180 Msa0688620:CDS 50.0%
AACCACATACTCACAACCGG+AGG + chr4_4:54749380-54749399 Msa0688620:CDS 50.0%
ACCACATACTCACAACCGGA+GGG + chr4_4:54749381-54749400 Msa0688620:CDS 50.0%
GGTCAACAATTAGCCAGTGG+AGG + chr4_4:54749509-54749528 Msa0688620:CDS 50.0%
CTGCAGTAAAGGCTCTTGCT+TGG + chr4_4:54749621-54749640 Msa0688620:CDS 50.0%
!! CTTGCTTGGTGTCCATTCCA+AGG + chr4_4:54749635-54749654 Msa0688620:CDS 50.0%
!! GGGAATTTGCTAGCTACTGG+TGG + chr4_4:54749656-54749675 Msa0688620:CDS 50.0%
AACCGAGTTCAAGCATGCAC+CGG - chr4_4:54749723-54749742 None:intergenic 50.0%
TGCTTGAACTCGGTTGACAC+TGG + chr4_4:54749728-54749747 Msa0688620:CDS 50.0%
GCTTGAACTCGGTTGACACT+GGG + chr4_4:54749729-54749748 Msa0688620:CDS 50.0%
CCCAAGTATGTTCCCTGCTA+TGG + chr4_4:54749753-54749772 Msa0688620:CDS 50.0%
AGGGAGTTACTCAGCTCTCA+TGG + chr4_4:54749788-54749807 Msa0688620:CDS 50.0%
GTGAAGATGGCAGAGCTCAA+TGG + chr4_4:54749854-54749873 Msa0688620:CDS 50.0%
TCTTTATATGGCGCAGAGCC+CGG + chr4_4:54749892-54749911 Msa0688620:CDS 50.0%
CAGCAGCAGACGAAACATTG+AGG + chr4_4:54749936-54749955 Msa0688620:CDS 50.0%
CTATCTACGCGTTGCCTCAT+AGG - chr4_4:54750120-54750139 None:intergenic 50.0%
GGCAACGCGTAGATAGAAGA+TGG + chr4_4:54750124-54750143 Msa0688620:three_prime_UTR 50.0%
! ACAACACATGATTTGCCCCG+TGG + chr4_4:54750201-54750220 Msa0688620:three_prime_UTR 50.0%
CGATATACGTGGTTCGTCAC+GGG - chr4_4:54750243-54750262 None:intergenic 50.0%
CCGATATACGTGGTTCGTCA+CGG - chr4_4:54750244-54750263 None:intergenic 50.0%
CCGTGACGAACCACGTATAT+CGG + chr4_4:54750241-54750260 Msa0688620:three_prime_UTR 50.0%
! CCTGTACGCTTCTCTGGAAG+GGG - chr4_4:54748447-54748466 None:intergenic 55.0%
GCCCAGGCGAATTATTCCTC+AGG + chr4_4:54748598-54748617 Msa0688620:CDS 55.0%
TTTGGACGCTCCAGACCTTG+TGG + chr4_4:54748977-54748996 Msa0688620:CDS 55.0%
AGGGCCGTCTTCTTCTTCGA+CGG - chr4_4:54749117-54749136 None:intergenic 55.0%
! TCTGTGAGTTGGGCTCCTGA+TGG + chr4_4:54749143-54749162 Msa0688620:CDS 55.0%
! CTGTGAGTTGGGCTCCTGAT+GGG + chr4_4:54749144-54749163 Msa0688620:CDS 55.0%
! GCTCCTGATGGGCGTCATAT+TGG + chr4_4:54749155-54749174 Msa0688620:CDS 55.0%
GTGGTCATAGGCAGCGAGTA+GGG + chr4_4:54749342-54749361 Msa0688620:CDS 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG + chr4_4:54749349-54749368 Msa0688620:CDS 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG + chr4_4:54749354-54749373 Msa0688620:CDS 55.0%
TCCCTCCGGTTGTGAGTATG+TGG - chr4_4:54749385-54749404 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG + chr4_4:54749385-54749404 Msa0688620:CDS 55.0%
CTCCTACACAGTGGCTTCAC+AGG + chr4_4:54749582-54749601 Msa0688620:CDS 55.0%
AGCCTGTGAAGCCACTGTGT+AGG - chr4_4:54749587-54749606 None:intergenic 55.0%
! GTTCAAGCATGCACCGGTGT+GGG - chr4_4:54749717-54749736 None:intergenic 55.0%
! AGTTCAAGCATGCACCGGTG+TGG - chr4_4:54749718-54749737 None:intergenic 55.0%
CACCGGTGCATGCTTGAACT+CGG + chr4_4:54749718-54749737 Msa0688620:CDS 55.0%
TTGCCACTGTGCAACCATCC+GGG - chr4_4:54749913-54749932 None:intergenic 55.0%
GTTGCCACTGTGCAACCATC+CGG - chr4_4:54749914-54749933 None:intergenic 55.0%
TGGTGTGTGACTACGTCCAC+GGG - chr4_4:54750220-54750239 None:intergenic 55.0%
GTGGTGTGTGACTACGTCCA+CGG - chr4_4:54750221-54750240 None:intergenic 55.0%
TATACGTGGTTCGTCACGGG+TGG - chr4_4:54750240-54750259 None:intergenic 55.0%
! CTGGAAGGGGAGCACACTTC+TGG - chr4_4:54748434-54748453 None:intergenic 60.0%
! CCCCTTCCAGAGAAGCGTAC+AGG + chr4_4:54748444-54748463 Msa0688620:CDS 60.0%
GGTGGTCATAGGCAGCGAGT+AGG + chr4_4:54749341-54749360 Msa0688620:CDS 60.0%
CTCACAACCGGAGGGATGGA+CGG + chr4_4:54749389-54749408 Msa0688620:CDS 60.0%
CTAGCTACTGGTGGAGGCAG+TGG + chr4_4:54749665-54749684 Msa0688620:CDS 60.0%
TATATGGCGCAGAGCCCGGA+TGG + chr4_4:54749896-54749915 Msa0688620:CDS 60.0%
GGTGTGTGACTACGTCCACG+GGG - chr4_4:54750219-54750238 None:intergenic 60.0%
GAGCCCGGATGGTTGCACAG+TGG + chr4_4:54749907-54749926 Msa0688620:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54747548 54750410 54747548 ID=Msa0688620;Name=Msa0688620
chr4_4 mRNA 54747548 54750410 54747548 ID=Msa0688620-mRNA-1;Parent=Msa0688620;Name=Msa0688620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=263|1|1|1|1|1|4|359|454
chr4_4 exon 54747548 54747903 54747548 ID=Msa0688620-mRNA-1:exon:14407;Parent=Msa0688620-mRNA-1
chr4_4 exon 54748344 54748619 54748344 ID=Msa0688620-mRNA-1:exon:14408;Parent=Msa0688620-mRNA-1
chr4_4 exon 54748963 54749232 54748963 ID=Msa0688620-mRNA-1:exon:14409;Parent=Msa0688620-mRNA-1
chr4_4 exon 54749326 54750410 54749326 ID=Msa0688620-mRNA-1:exon:14410;Parent=Msa0688620-mRNA-1
chr4_4 five_prime_UTR 54747548 54747810 54747548 ID=Msa0688620-mRNA-1:five_prime_utr;Parent=Msa0688620-mRNA-1
chr4_4 CDS 54747811 54747903 54747811 ID=Msa0688620-mRNA-1:cds;Parent=Msa0688620-mRNA-1
chr4_4 CDS 54748344 54748619 54748344 ID=Msa0688620-mRNA-1:cds;Parent=Msa0688620-mRNA-1
chr4_4 CDS 54748963 54749232 54748963 ID=Msa0688620-mRNA-1:cds;Parent=Msa0688620-mRNA-1
chr4_4 CDS 54749326 54750051 54749326 ID=Msa0688620-mRNA-1:cds;Parent=Msa0688620-mRNA-1
chr4_4 three_prime_UTR 54750052 54750410 54750052 ID=Msa0688620-mRNA-1:three_prime_utr;Parent=Msa0688620-mRNA-1
Gene Sequence

>Msa0688620

ATGGCTTCAGGTTCTTTGAGTTCTCCCGCCATCAAAACCCAATCACGTTTTCCTCTTCAGGAACACTTACAGAGAAAGAGTTCCAAGGAAAATTTGGACAGATTTATACCGAATAGATCGGCGATGGATTTCGATTATGCACACTACATGGTGACAGAAGGGGCTAAAGGTAAGGAAAATCCAGAAGTGTGCTCCCCTTCCAGAGAAGCGTACAGGAAGCTACTTGCAGAGTCTTTAAACATGAACAGGACCAGAATTCTAGCTTTCAAGAACAAGCCACCTACTCCAGTTGATTTGATTCCTCATGAGCTTACTTCATCATCTCTTCAACAAGATAAAACCATAAAGCCCAGGCGAATTATTCCTCAGACTTCTGAGAGGACTTTGGACGCTCCAGACCTTGTGGATGACTATTACCTCAATTTATTAGACTGGGGAAGCGCCAATGTTCTTGCAATAGCACTTGGAAACACAGTGTATTTGTGGGATGCATCAAATGGTTCTACTTCAGAACTTGTTACCGTCGAAGAAGAAGACGGCCCTATCACATCTGTGAGTTGGGCTCCTGATGGGCGTCATATTGGCATTGGTTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCAGATAAACAGTTGAGAACTTTGAAAGGTGGTCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAACCACATACTCACAACCGGAGGGATGGACGGTAAAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGAACAAGAAGTTTGCGGATTGAAATGGTCGGCTAACGGTCAACAATTAGCCAGTGGAGGGAATGATAATCTACTTTACATCTGGGACAGAGGTACATCAACTTCTAGTTCTCCTACACAGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAGGCTCTTGCTTGGTGTCCATTCCAAGGGAATTTGCTAGCTACTGGTGGAGGCAGTGGCGATCGAACAATCAAGTTTTGGAATACCCACACCGGTGCATGCTTGAACTCGGTTGACACTGGGTCCCAAGTATGTTCCCTGCTATGGAACAAGAATGAAAGGGAGTTACTCAGCTCTCATGGTTTTACACAGAATCAGCTAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAGCTCAATGGTCACACTTCAAGAGTTCTTTATATGGCGCAGAGCCCGGATGGTTGCACAGTGGCAACAGCAGCAGCAGACGAAACATTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGTAGCAAAAGCTGCACCGAAAGCAAGAGCTGAGCCATTTTCACATGTGAGCCGCATTCGCTAA

Protein sequence

>Msa0688620

MASGSLSSPAIKTQSRFPLQEHLQRKSSKENLDRFIPNRSAMDFDYAHYMVTEGAKGKENPEVCSPSREAYRKLLAESLNMNRTRILAFKNKPPTPVDLIPHELTSSSLQQDKTIKPRRIIPQTSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGSTSELVTVEEEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASDKQLRTLKGGHRQRVGSLAWNNHILTTGGMDGKIINNDVRIRAHIVETYRGHEQEVCGLKWSANGQQLASGGNDNLLYIWDRGTSTSSSPTQWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDRTIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLYMAQSPDGCTVATAAADETLRFWNAFGTPEVVAKAAPKARAEPFSHVSRIR*