AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381800 MtrunA17_Chr5g0395821 99.119 454 4 0 1 454 1 454 0.0 937
Msa1381800 MtrunA17_Chr3g0098921 91.503 459 34 4 1 454 1 459 0.0 872
Msa1381800 MtrunA17_Chr7g0267961 75.223 448 105 5 12 454 11 457 0.0 707
Msa1381800 MtrunA17_Chr7g0233651 66.966 445 126 7 15 454 3 431 0.0 591
Msa1381800 MtrunA17_Chr7g0235181 65.011 443 135 7 14 454 2 426 0.0 563
Msa1381800 MtrunA17_Chr7g0234591 61.607 448 147 8 17 454 4 436 0.0 537
Msa1381800 MtrunA17_Chr7g0228191 71.160 319 90 1 124 440 13 331 9.00e-173 488
Msa1381800 MtrunA17_Chr2g0330681 54.499 389 149 9 25 408 4 369 2.49e-131 384
Msa1381800 MtrunA17_Chr2g0330601 58.055 329 106 4 126 452 71 369 2.64e-127 374
Msa1381800 MtrunA17_Chr4g0057131 41.611 447 218 9 11 433 29 456 3.72e-113 341
Msa1381800 MtrunA17_Chr3g0111961 53.618 304 133 4 126 429 168 463 1.18e-112 340
Msa1381800 MtrunA17_Chr2g0308501 49.840 313 147 5 123 430 4 311 1.03e-107 322
Msa1381800 MtrunA17_Chr2g0281451 27.386 241 156 9 140 374 18 245 1.23e-17 85.9
Msa1381800 MtrunA17_Chr6g0448921 26.891 238 155 9 140 371 19 243 2.76e-15 78.6
Msa1381800 MtrunA17_Chr5g0401671 23.630 292 162 8 143 426 312 550 6.54e-15 77.0
Msa1381800 MtrunA17_Chr4g0053651 26.336 262 168 11 177 427 287 534 2.15e-14 75.5
Msa1381800 MtrunA17_Chr1g0176241 27.778 252 152 11 182 426 253 481 2.81e-14 74.7
Msa1381800 MtrunA17_Chr1g0176241 25.510 294 156 10 182 428 122 399 1.17e-13 72.8
Msa1381800 MtrunA17_Chr5g0401661 23.121 346 192 10 83 426 367 640 1.35e-13 73.2
Msa1381800 MtrunA17_Chr3g0136971 24.194 310 192 9 155 434 326 622 1.22e-12 70.1
Msa1381800 MtrunA17_Chr3g0136971 27.273 198 129 7 150 345 434 618 2.14e-12 69.3
Msa1381800 MtrunA17_Chr1g0172501 24.000 300 173 10 178 433 271 559 2.52e-12 68.9
Msa1381800 MtrunA17_Chr3g0093681 24.000 300 173 10 178 433 271 559 9.88e-12 67.0
Msa1381800 MtrunA17_Chr5g0405851 27.374 179 118 5 166 342 240 408 2.00e-11 65.9
Msa1381800 MtrunA17_Chr7g0253861 22.857 210 150 4 220 427 53 252 5.46e-11 63.9
Msa1381800 MtrunA17_Chr1g0185501 26.768 198 128 6 150 341 126 312 6.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381800 AT4G33270.1 79.778 450 89 2 7 454 8 457 0.0 759
Msa1381800 AT4G33260.1 80.317 442 85 2 15 454 6 447 0.0 737
Msa1381800 AT4G33260.2 80.535 411 78 2 15 423 6 416 0.0 701
Msa1381800 AT5G27570.1 69.623 451 130 5 7 454 4 450 0.0 642
Msa1381800 AT5G27080.1 69.585 434 126 4 23 454 13 442 0.0 623
Msa1381800 AT5G26900.1 68.578 436 132 3 20 454 13 444 0.0 612
Msa1381800 AT5G27945.1 62.634 372 123 5 95 454 61 428 1.46e-162 466
Msa1381800 AT4G22910.1 42.822 411 217 4 33 433 62 464 3.39e-115 347
Msa1381800 AT5G13840.1 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa1381800 AT5G13840.2 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa1381800 AT4G11920.1 41.556 450 227 9 5 433 22 456 2.36e-110 334
Msa1381800 AT1G11160.4 29.101 189 119 7 159 345 40 215 3.86e-16 81.6
Msa1381800 AT1G11160.2 29.101 189 119 7 159 345 40 215 4.24e-16 81.6
Msa1381800 AT1G11160.1 29.101 189 119 7 159 345 40 215 4.36e-16 81.6
Msa1381800 AT5G08390.1 26.891 238 155 9 140 371 19 243 9.51e-16 80.5
Msa1381800 AT1G61210.3 26.201 229 141 8 138 351 6 221 1.51e-15 80.1
Msa1381800 AT1G61210.2 26.201 229 141 8 138 351 6 221 1.71e-15 79.7
Msa1381800 AT1G61210.1 26.201 229 141 8 138 351 6 221 1.72e-15 79.7
Msa1381800 AT1G11160.3 29.341 167 105 6 181 345 18 173 1.98e-15 79.3
Msa1381800 AT5G23430.1 27.189 217 140 8 140 351 19 222 1.36e-14 76.6
Msa1381800 AT5G23430.3 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa1381800 AT5G23430.2 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa1381800 AT5G52820.1 27.451 255 152 12 182 428 244 473 7.98e-14 73.9
Msa1381800 AT5G25150.1 26.000 300 183 10 155 428 329 615 2.42e-13 72.8
Msa1381800 AT5G25150.1 27.551 196 127 7 150 343 433 615 1.97e-11 66.6
Msa1381800 AT5G25150.2 26.000 300 183 10 155 428 329 615 2.88e-13 72.4
Msa1381800 AT5G25150.2 27.551 196 127 7 150 343 433 615 2.18e-11 66.6
Msa1381800 AT3G49660.1 23.922 255 175 9 178 426 71 312 7.49e-13 69.7
Msa1381800 AT3G49660.1 25.373 201 125 9 150 341 128 312 9.93e-11 63.2
Msa1381800 AT5G56130.1 23.077 208 117 4 259 427 16 219 1.06e-11 66.2
Msa1381800 AT5G67320.1 24.221 289 166 12 143 427 330 569 1.55e-11 67.0
Msa1381800 AT2G41500.1 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa1381800 AT2G41500.2 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa1381800 AT5G16750.1 25.238 210 144 7 149 354 32 232 1.90e-11 67.0
Msa1381800 AT2G32700.6 24.453 274 180 13 159 426 532 784 4.42e-11 65.9
Msa1381800 AT2G32700.2 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa1381800 AT2G32700.5 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa1381800 AT2G32700.1 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa1381800 AT2G32700.4 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa1381800 AT2G32700.3 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa1381800 AT2G32700.7 24.453 274 180 13 159 426 553 805 5.19e-11 65.5
Msa1381800 AT5G13480.2 26.383 235 149 10 182 409 137 354 6.96e-11 65.1
Msa1381800 AT5G13480.4 26.383 235 149 10 182 409 114 331 8.20e-11 64.7
Msa1381800 AT5G13480.3 26.383 235 149 10 182 409 114 331 8.23e-11 64.7

Find 153 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCGCCTGGGCTTTA+TGG 0.172694 tig0020453:-95137 None:intergenic
CAGACGAAACATTGAGGTTT+TGG 0.210103 tig0020453:+96488 Msa1381800:CDS
AGATAGGAATTGTATGAATT+AGG 0.210843 tig0020453:-94093 None:intergenic
TTTGAATGATGAGAGAAATA+AGG 0.244865 tig0020453:-94133 None:intergenic
CTGGAAGGGGAGCACACTTC+TGG 0.268112 tig0020453:-94977 None:intergenic
GATAGGAATTGTATGAATTA+GGG 0.295845 tig0020453:-94092 None:intergenic
TTAAAACCCCAACAAATAAA+AGG 0.309977 tig0020453:+96924 Msa1381800:three_prime_UTR
CTCTCTCTAACAATGGCTTC+AGG 0.319079 tig0020453:+94345 Msa1381800:exon
CTATCTACGCGTTGCCTCAT+AGG 0.321314 tig0020453:-96663 None:intergenic
ATGCGGCTCACATGTGAAAA+TGG 0.326418 tig0020453:-96568 None:intergenic
GTTCTTGAAAGCTAGAATTC+TGG 0.331154 tig0020453:-95047 None:intergenic
ATGATAATCTACTTTACATC+TGG 0.357040 tig0020453:+96080 Msa1381800:CDS
GCGATCGAACAATCAAGTTT+TGG 0.357857 tig0020453:+96233 Msa1381800:CDS
TAGCTTCCTGTACGCTTCTC+TGG 0.359002 tig0020453:-94996 None:intergenic
AATGGCTCAGCTCTTGCTTT+CGG 0.359726 tig0020453:-96550 None:intergenic
CCCTATCACATCTGTGAGTT+GGG 0.371621 tig0020453:+95679 Msa1381800:CDS
CACTTCAAGAGTTCTTTATA+TGG 0.372662 tig0020453:+96426 Msa1381800:CDS
TTGAATGATGAGAGAAATAA+GGG 0.380069 tig0020453:-94132 None:intergenic
TCCATAGCAGGGAACATACT+TGG 0.385318 tig0020453:-96300 None:intergenic
GTTGCCACTGTGCAACCATC+CGG 0.387110 tig0020453:-96457 None:intergenic
AAATCCATCGCCGATCTATT+CGG 0.388532 tig0020453:-94905 None:intergenic
GCTCCTGATGGGCGTCATAT+TGG 0.389395 tig0020453:+95701 Msa1381800:CDS
CCTGAAGAGGAAAACGTGAT+TGG 0.389938 tig0020453:-94395 None:intergenic
GGATACAGCTTCAGATAAAC+AGG 0.391975 tig0020453:+95757 Msa1381800:CDS
CAGAGTCTTTAAACATGAAC+AGG 0.397977 tig0020453:+95023 Msa1381800:CDS
GAACTTTGAAAGGTGGTCAT+AGG 0.402652 tig0020453:+95876 Msa1381800:CDS
ATTACCTCAATTTATTAGAC+TGG 0.406978 tig0020453:+95552 Msa1381800:CDS
CTGAAGAGGAAAACGTGATT+GGG 0.412005 tig0020453:-94394 None:intergenic
TCTGCCATCTTCACCATTGA+AGG 0.425176 tig0020453:-96391 None:intergenic
AAGAAGTTTGCGGATTGAAA+TGG 0.432752 tig0020453:+96023 Msa1381800:CDS
CCCAAGTATGTTCCCTGCTA+TGG 0.435862 tig0020453:+96299 Msa1381800:CDS
TAGGCAGCGAGTAGGGTCTT+TGG 0.438523 tig0020453:+95895 Msa1381800:CDS
TAATAGTCATCCACAAGGTC+TGG 0.439377 tig0020453:-95533 None:intergenic
TTTCATTCTTGTTCCATAGC+AGG 0.442202 tig0020453:-96312 None:intergenic
CACAGAATCAGCTAACACTT+TGG 0.446675 tig0020453:+96362 Msa1381800:CDS
GCCCAACTCACAGATGTGAT+AGG 0.447194 tig0020453:-95680 None:intergenic
GCCCTATCACATCTGTGAGT+TGG 0.447852 tig0020453:+95678 Msa1381800:CDS
CAAGGGAATTTGCTAGCTAC+TGG 0.450097 tig0020453:+96199 Msa1381800:CDS
CTTGCTTGGTGTCCATTCCA+AGG 0.450852 tig0020453:+96181 Msa1381800:CDS
CTCTGTAAGTGTTCCTGAAG+AGG 0.453227 tig0020453:-94408 None:intergenic
TGCTTGAACTCGGTTGACAC+TGG 0.455069 tig0020453:+96274 Msa1381800:CDS
TCATGAGGAATCAAATCAAC+TGG 0.456090 tig0020453:-95082 None:intergenic
TTGGAAACACAGTGTATTTG+TGG 0.457657 tig0020453:+95603 Msa1381800:CDS
TCTTTATATGGCGCAGAGCC+CGG 0.458141 tig0020453:+96438 Msa1381800:CDS
AGAGATTATATATAGCAGAT+AGG 0.460787 tig0020453:-94109 None:intergenic
GTACTTTACAGTGGAGTAAA+GGG 0.462572 tig0020453:-96641 None:intergenic
CTCCTACACAGTGGCTTCAC+AGG 0.468541 tig0020453:+96128 Msa1381800:CDS
TGGTGTGTGACTACGTCCAC+GGG 0.468941 tig0020453:-96763 None:intergenic
TCAGACTTCTGAGAGGACTT+TGG 0.470401 tig0020453:+95505 Msa1381800:intron
TCCTGTACGCTTCTCTGGAA+GGG 0.470590 tig0020453:-94991 None:intergenic
GATGGGCGTCATATTGGCAT+TGG 0.470950 tig0020453:+95707 Msa1381800:CDS
GGTACTTTACAGTGGAGTAA+AGG 0.472946 tig0020453:-96642 None:intergenic
CTAGCTACTGGTGGAGGCAG+TGG 0.480596 tig0020453:+96211 Msa1381800:CDS
CCGTGACGAACCACGTATAT+CGG 0.480622 tig0020453:+96787 Msa1381800:three_prime_UTR
TTCATTCTTGTTCCATAGCA+GGG 0.481145 tig0020453:-96311 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 tig0020453:+95735 Msa1381800:CDS
ATGCCAATATGACGCCCATC+AGG 0.488601 tig0020453:-95704 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 tig0020453:+96378 Msa1381800:CDS
ATATCCTTCAATGGTGAAGA+TGG 0.498891 tig0020453:+96387 Msa1381800:CDS
AACAACCACATACTCACAAC+CGG 0.499451 tig0020453:+95923 Msa1381800:CDS
TGCTATGGAACAAGAATGAA+AGG 0.505330 tig0020453:+96314 Msa1381800:CDS
TTCCTGTACGCTTCTCTGGA+AGG 0.508481 tig0020453:-94992 None:intergenic
GTGGTGTGTGACTACGTCCA+CGG 0.509034 tig0020453:-96764 None:intergenic
TTGCCACTGTGCAACCATCC+GGG 0.511124 tig0020453:-96456 None:intergenic
CACCTGAGGAATAATTCGCC+TGG 0.512239 tig0020453:-95146 None:intergenic
TTGCTTGGTGTCCATTCCAA+GGG 0.513094 tig0020453:+96182 Msa1381800:CDS
TCTGTGAGTTGGGCTCCTGA+TGG 0.513830 tig0020453:+95689 Msa1381800:CDS
CACCGGTGCATGCTTGAACT+CGG 0.514125 tig0020453:+96264 Msa1381800:CDS
TTTCGATTATGCACACTACA+TGG 0.515001 tig0020453:+94925 Msa1381800:CDS
CTGTGAGTTGGGCTCCTGAT+GGG 0.515660 tig0020453:+95690 Msa1381800:CDS
CCCCTTCCAGAGAAGCGTAC+AGG 0.515877 tig0020453:+94990 Msa1381800:CDS
CCGATATACGTGGTTCGTCA+CGG 0.520907 tig0020453:-96787 None:intergenic
AGATCATACATCTGCAGTAA+AGG 0.521203 tig0020453:+96156 Msa1381800:CDS
AGGGAGTTACTCAGCTCTCA+TGG 0.521335 tig0020453:+96334 Msa1381800:CDS
CACACTACATGGTGACAGAA+GGG 0.522072 tig0020453:+94936 Msa1381800:CDS
GGGCATGAACAAGAAGTTTG+CGG 0.522362 tig0020453:+96013 Msa1381800:CDS
TAGATTATCATTCCCTCCAC+TGG 0.527433 tig0020453:-96068 None:intergenic
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 tig0020453:+95866 Msa1381800:intron
TTACCTCAATTTATTAGACT+GGG 0.529967 tig0020453:+95553 Msa1381800:CDS
AATGTTCTTGCAATAGCACT+TGG 0.530924 tig0020453:+95584 Msa1381800:CDS
CCTGTACGCTTCTCTGGAAG+GGG 0.531549 tig0020453:-94990 None:intergenic
ACCCCAACAAATAAAAGGAA+TGG 0.535284 tig0020453:+96929 Msa1381800:three_prime_UTR
GCCCAGGCGAATTATTCCTC+AGG 0.535877 tig0020453:+95144 Msa1381800:CDS
ACCTGAGGAATAATTCGCCT+GGG 0.538294 tig0020453:-95145 None:intergenic
GACAGAAGGGGCTAAAGGTA+AGG 0.539789 tig0020453:+94949 Msa1381800:CDS
ATGGTGACAGAAGGGGCTAA+AGG 0.542605 tig0020453:+94944 Msa1381800:CDS
GCTAGCAAATTCCCTTGGAA+TGG 0.543063 tig0020453:-96193 None:intergenic
GCTTGAACTCGGTTGACACT+GGG 0.546774 tig0020453:+96275 Msa1381800:CDS
TTTGGACGCTCCAGACCTTG+TGG 0.549436 tig0020453:+95523 Msa1381800:CDS
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 tig0020453:+95736 Msa1381800:CDS
CTGCAGTAAAGGCTCTTGCT+TGG 0.552397 tig0020453:+96167 Msa1381800:CDS
GTGGTCATAGGCAGCGAGTA+GGG 0.553407 tig0020453:+95888 Msa1381800:CDS
GGAATCAAATCAACTGGAGT+AGG 0.555155 tig0020453:-95076 None:intergenic
GTTCAAGCATGCACCGGTGT+GGG 0.559486 tig0020453:-96260 None:intergenic
GTGAAGATGGCAGAGCTCAA+TGG 0.559588 tig0020453:+96400 Msa1381800:CDS
TGATAATCTACTTTACATCT+GGG 0.563072 tig0020453:+96081 Msa1381800:CDS
ATATTTGGGGACTGAATGAG+AGG 0.567505 tig0020453:-96869 None:intergenic
CCCAACTCACAGATGTGATA+GGG 0.567907 tig0020453:-95679 None:intergenic
GCACACTACATGGTGACAGA+AGG 0.570973 tig0020453:+94935 Msa1381800:CDS
CTACTTTACATCTGGGACAG+AGG 0.574017 tig0020453:+96088 Msa1381800:CDS
TTCCCCAGTCTAATAAATTG+AGG 0.574191 tig0020453:-95556 None:intergenic
GGCAACGCGTAGATAGAAGA+TGG 0.575004 tig0020453:+96670 Msa1381800:three_prime_UTR
CATACTCACAACCGGAGGGA+TGG 0.577159 tig0020453:+95931 Msa1381800:CDS
GATGATGAAGTAAGCTCATG+AGG 0.578213 tig0020453:-95097 None:intergenic
TCCCTCCGGTTGTGAGTATG+TGG 0.579028 tig0020453:-95928 None:intergenic
TATATGGCGCAGAGCCCGGA+TGG 0.579495 tig0020453:+96442 Msa1381800:CDS
CGATATACGTGGTTCGTCAC+GGG 0.579804 tig0020453:-96786 None:intergenic
TCCACTGTAAAGTACCTATG+AGG 0.581940 tig0020453:+96649 Msa1381800:three_prime_UTR
CAGATTTATACCGAATAGAT+CGG 0.585167 tig0020453:+94895 Msa1381800:CDS
TATTTGTGGGATGCATCAAA+TGG 0.585182 tig0020453:+95617 Msa1381800:CDS
CAGTAGCTAGCAAATTCCCT+TGG 0.590454 tig0020453:-96198 None:intergenic
CTCACAACCGGAGGGATGGA+CGG 0.590810 tig0020453:+95935 Msa1381800:CDS
AACCGAGTTCAAGCATGCAC+CGG 0.591621 tig0020453:-96266 None:intergenic
TGGAAACACAGTGTATTTGT+GGG 0.594599 tig0020453:+95604 Msa1381800:CDS
GGTGGTCATAGGCAGCGAGT+AGG 0.596714 tig0020453:+95887 Msa1381800:CDS
AATTTGCTAGCTACTGGTGG+AGG 0.597622 tig0020453:+96205 Msa1381800:CDS
CAGCAGCAGACGAAACATTG+AGG 0.598798 tig0020453:+96482 Msa1381800:CDS
GGGAATTTGCTAGCTACTGG+TGG 0.599431 tig0020453:+96202 Msa1381800:CDS
TATACCGAATAGATCGGCGA+TGG 0.599857 tig0020453:+94901 Msa1381800:CDS
ATCAAATCAACTGGAGTAGG+TGG 0.601482 tig0020453:-95073 None:intergenic
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 tig0020453:+95900 Msa1381800:CDS
TAACACGTTACAATGTACAT+AGG 0.602945 tig0020453:-96712 None:intergenic
GGATTGAAATGGTCGGCTAA+CGG 0.603805 tig0020453:+96034 Msa1381800:CDS
AGTTCAAGCATGCACCGGTG+TGG 0.604168 tig0020453:-96261 None:intergenic
ATGTTACTGCTTAGCGAATG+CGG 0.605647 tig0020453:-96585 None:intergenic
GTAAAGGGCAGAAAATAACT+TGG 0.606742 tig0020453:-96626 None:intergenic
AAGATAAAACCATAAAGCCC+AGG 0.612129 tig0020453:+95128 Msa1381800:CDS
CCATAGCAGGGAACATACTT+GGG 0.613427 tig0020453:-96299 None:intergenic
AGGGCCGTCTTCTTCTTCGA+CGG 0.614774 tig0020453:-95660 None:intergenic
AAGTGCTATTGCAAGAACAT+TGG 0.617527 tig0020453:-95582 None:intergenic
CAGTTGAGAACTTTGAAAGG+TGG 0.617886 tig0020453:+95869 Msa1381800:intron
GTCAACAATTAGCCAGTGGA+GGG 0.619435 tig0020453:+96056 Msa1381800:CDS
GGTCAACAATTAGCCAGTGG+AGG 0.633558 tig0020453:+96055 Msa1381800:CDS
TACCTCAATTTATTAGACTG+GGG 0.642053 tig0020453:+95554 Msa1381800:CDS
GCTATGGAACAAGAATGAAA+GGG 0.642631 tig0020453:+96315 Msa1381800:CDS
ACCACATACTCACAACCGGA+GGG 0.650856 tig0020453:+95927 Msa1381800:CDS
GCCTCATAGGTACTTTACAG+TGG 0.657693 tig0020453:-96650 None:intergenic
TATACGTGGTTCGTCACGGG+TGG 0.660616 tig0020453:-96783 None:intergenic
ACAACACATGATTTGCCCCG+TGG 0.662203 tig0020453:+96747 Msa1381800:three_prime_UTR
AGCCTGTGAAGCCACTGTGT+AGG 0.662766 tig0020453:-96130 None:intergenic
ACACTACATGGTGACAGAAG+GGG 0.666148 tig0020453:+94937 Msa1381800:CDS
AACGGTCAACAATTAGCCAG+TGG 0.669539 tig0020453:+96052 Msa1381800:CDS
CTTACAGAGAAAGAGTTCCA+AGG 0.680127 tig0020453:+94422 Msa1381800:CDS
GTTACCGTCGAAGAAGAAGA+CGG 0.688864 tig0020453:+95656 Msa1381800:CDS
ACATTGTTGAAACATACAGA+GGG 0.688874 tig0020453:+95993 Msa1381800:CDS
AACCACATACTCACAACCGG+AGG 0.695066 tig0020453:+95926 Msa1381800:CDS
CACATTGTTGAAACATACAG+AGG 0.702329 tig0020453:+95992 Msa1381800:CDS
AGTTTGCGGATTGAAATGGT+CGG 0.710202 tig0020453:+96027 Msa1381800:CDS
TGAGGTAATAGTCATCCACA+AGG 0.712406 tig0020453:-95538 None:intergenic
AGAACAAAGACCGATATACG+TGG 0.737164 tig0020453:-96797 None:intergenic
GGTGTGTGACTACGTCCACG+GGG 0.745352 tig0020453:-96762 None:intergenic
CTTCTAGTTCTCCTACACAG+TGG 0.755247 tig0020453:+96119 Msa1381800:CDS
GAGCCCGGATGGTTGCACAG+TGG 0.763260 tig0020453:+96453 Msa1381800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATAAATTTTGAAATTT+TGG + tig0020453:94572-94591 Msa1381800:intron 10.0%
!!! AGAATAAATTTTGAAATTTT+GGG + tig0020453:94573-94592 Msa1381800:intron 10.0%
!!! TTGTGAATAAATTTTAAAAT+TGG + tig0020453:94608-94627 Msa1381800:intron 10.0%
!!! TGTGAATAAATTTTAAAATT+GGG + tig0020453:94609-94628 Msa1381800:intron 10.0%
!! TTTATTAATTCTTAGTTAAA+AGG + tig0020453:95289-95308 Msa1381800:intron 10.0%
!! TTATTAATTCTTAGTTAAAA+GGG + tig0020453:95290-95309 Msa1381800:intron 10.0%
!!! TGATATGTTTTTATATATTT+GGG - tig0020453:96886-96905 None:intergenic 10.0%
!!! GGATTTTAATTATCAAATTT+TGG + tig0020453:94507-94526 Msa1381800:intron 15.0%
!!! GAATAAATTTTGAAATTTTG+GGG + tig0020453:94574-94593 Msa1381800:intron 15.0%
!!! AATAAATTTTGAAATTTTGG+GGG + tig0020453:94575-94594 Msa1381800:intron 15.0%
!! AATAACAATGATAAAACATA+AGG - tig0020453:95196-95215 None:intergenic 15.0%
!!! ATGTTTTATCATTGTTATTT+TGG + tig0020453:95197-95216 Msa1381800:intron 15.0%
!! ACTCATTCAAAATTTAAATT+TGG - tig0020453:95242-95261 None:intergenic 15.0%
!!! GATATGTTTTTATATATTTG+GGG - tig0020453:96885-96904 None:intergenic 15.0%
!!! CTGATATGTTTTTATATATT+TGG - tig0020453:96887-96906 None:intergenic 15.0%
!! TATTCAGATCTTTCAAAATT+AGG + tig0020453:94468-94487 Msa1381800:intron 20.0%
!! ATTCAGATCTTTCAAAATTA+GGG + tig0020453:94469-94488 Msa1381800:intron 20.0%
!!! ATTAGGGTTTTAATGTAAAT+TGG + tig0020453:94485-94504 Msa1381800:intron 20.0%
!!! TTAGGGTTTTAATGTAAATT+GGG + tig0020453:94486-94505 Msa1381800:intron 20.0%
!!! ATTATCAAATTTTGGTGTTT+TGG + tig0020453:94515-94534 Msa1381800:intron 20.0%
!!! GGATTTTTAATTTTCGAATT+GGG + tig0020453:94630-94649 Msa1381800:intron 20.0%
!!! GATTTTTAATTTTCGAATTG+GGG + tig0020453:94631-94650 Msa1381800:intron 20.0%
!!! ATTTTTAATTTTCGAATTGG+GGG + tig0020453:94632-94651 Msa1381800:intron 20.0%
!! CACAAAATTGCAAAATATTA+TGG - tig0020453:95462-95481 None:intergenic 20.0%
! AGAGATTATATATAGCAGAT+AGG - tig0020453:94112-94131 None:intergenic 25.0%
! TTGAATGATGAGAGAAATAA+GGG - tig0020453:94135-94154 None:intergenic 25.0%
! TTTGAATGATGAGAGAAATA+AGG - tig0020453:94136-94155 None:intergenic 25.0%
!! TCTAATTCATTTCTTTTGCA+GGG + tig0020453:94242-94261 Msa1381800:five_prime_UTR 25.0%
!! AAATGTTCTTACATTTTCCT+TGG - tig0020453:94442-94461 None:intergenic 25.0%
! TTAGACTACTAATCCAATTA+TGG - tig0020453:94541-94560 None:intergenic 25.0%
!!! GGGATTTTTAATTTTCGAAT+TGG + tig0020453:94629-94648 Msa1381800:intron 25.0%
! AACTCAGTCAATAAAAAGTT+TGG - tig0020453:94780-94799 None:intergenic 25.0%
!!! TCATTGTTATTTTGGTTCTT+TGG + tig0020453:95205-95224 Msa1381800:intron 25.0%
!!! AATGAGTTTTGAAAATCAAG+TGG + tig0020453:95255-95274 Msa1381800:intron 25.0%
!!! ATGAGTTTTGAAAATCAAGT+GGG + tig0020453:95256-95275 Msa1381800:intron 25.0%
!!! TTAGGTTTTTGAAATTCAAG+TGG + tig0020453:95380-95399 Msa1381800:intron 25.0%
! ATTACCTCAATTTATTAGAC+TGG + tig0020453:95552-95571 Msa1381800:CDS 25.0%
! TTACCTCAATTTATTAGACT+GGG + tig0020453:95553-95572 Msa1381800:CDS 25.0%
!! TAGTTCATAAAGGTGTATTA+AGG - tig0020453:95804-95823 None:intergenic 25.0%
!! AGGAATTTGATAGTTCATAA+AGG - tig0020453:95814-95833 None:intergenic 25.0%
! AAACCAAACAAGAATAATGT+TGG - tig0020453:95846-95865 None:intergenic 25.0%
! ATGATAATCTACTTTACATC+TGG + tig0020453:96080-96099 Msa1381800:CDS 25.0%
! TGATAATCTACTTTACATCT+GGG + tig0020453:96081-96100 Msa1381800:CDS 25.0%
! TTAAAACCCCAACAAATAAA+AGG + tig0020453:96924-96943 Msa1381800:three_prime_UTR 25.0%
!!! TTCCATTCCTTTTATTTGTT+GGG - tig0020453:96934-96953 None:intergenic 25.0%
!!! ATTCCATTCCTTTTATTTGT+TGG - tig0020453:96935-96954 None:intergenic 25.0%
! GTCTAATTCATTTCTTTTGC+AGG + tig0020453:94241-94260 Msa1381800:five_prime_UTR 30.0%
! TTCTTTTCTCTCTCTAACAA+TGG + tig0020453:94338-94357 Msa1381800:exon 30.0%
CAGATTTATACCGAATAGAT+CGG + tig0020453:94895-94914 Msa1381800:CDS 30.0%
CTTAGTTAAAAGGGTTTGTA+TGG + tig0020453:95299-95318 Msa1381800:intron 30.0%
!! TCTTAGTTGAAAGTGTTGTA+TGG + tig0020453:95423-95442 Msa1381800:intron 30.0%
TACCTCAATTTATTAGACTG+GGG + tig0020453:95554-95573 Msa1381800:CDS 30.0%
TTGCCAACATTATTCTTGTT+TGG + tig0020453:95840-95859 Msa1381800:intron 30.0%
ACATTGTTGAAACATACAGA+GGG + tig0020453:95993-96012 Msa1381800:CDS 30.0%
! ACTTTGGAAATATCCTTCAA+TGG + tig0020453:96378-96397 Msa1381800:CDS 30.0%
CACTTCAAGAGTTCTTTATA+TGG + tig0020453:96426-96445 Msa1381800:CDS 30.0%
TAACACGTTACAATGTACAT+AGG - tig0020453:96715-96734 None:intergenic 30.0%
!!! TTTTAAAGTGAGCAAGCAAA+GGG - tig0020453:96828-96847 None:intergenic 30.0%
!!! TTTTTAAAGTGAGCAAGCAA+AGG - tig0020453:96829-96848 None:intergenic 30.0%
! GCTTGCTCACTTTAAAAATA+TGG + tig0020453:96831-96850 Msa1381800:three_prime_UTR 30.0%
!! TCCATTCCTTTTATTTGTTG+GGG - tig0020453:96933-96952 None:intergenic 30.0%
!! AAAACGTGATTGGGTTTTGA+TGG - tig0020453:94388-94407 None:intergenic 35.0%
!!! TTTGGTGTTTTGGCCATAAT+TGG + tig0020453:94525-94544 Msa1381800:intron 35.0%
!! TTGATTTGTTTGTTGCCAGT+TGG + tig0020453:94871-94890 Msa1381800:intron 35.0%
TTTCGATTATGCACACTACA+TGG + tig0020453:94925-94944 Msa1381800:CDS 35.0%
CAGAGTCTTTAAACATGAAC+AGG + tig0020453:95023-95042 Msa1381800:CDS 35.0%
GTTCTTGAAAGCTAGAATTC+TGG - tig0020453:95050-95069 None:intergenic 35.0%
TCATGAGGAATCAAATCAAC+TGG - tig0020453:95085-95104 None:intergenic 35.0%
AAGATAAAACCATAAAGCCC+AGG + tig0020453:95128-95147 Msa1381800:CDS 35.0%
!! TGTGCTAGTTGATGATTAGT+TGG + tig0020453:95349-95368 Msa1381800:intron 35.0%
! GATTAGTTGGCTATCTGATT+AGG + tig0020453:95362-95381 Msa1381800:intron 35.0%
!! TTGTTTTTCAGACTTCTGAG+AGG + tig0020453:95498-95517 Msa1381800:intron 35.0%
TTCCCCAGTCTAATAAATTG+AGG - tig0020453:95559-95578 None:intergenic 35.0%
! AAGTGCTATTGCAAGAACAT+TGG - tig0020453:95585-95604 None:intergenic 35.0%
AATGTTCTTGCAATAGCACT+TGG + tig0020453:95584-95603 Msa1381800:CDS 35.0%
TTGGAAACACAGTGTATTTG+TGG + tig0020453:95603-95622 Msa1381800:CDS 35.0%
TGGAAACACAGTGTATTTGT+GGG + tig0020453:95604-95623 Msa1381800:CDS 35.0%
TATTTGTGGGATGCATCAAA+TGG + tig0020453:95617-95636 Msa1381800:CDS 35.0%
! AACAGGTTTTTACACTTACC+TGG + tig0020453:95774-95793 Msa1381800:intron 35.0%
AAGGTGTATTAAGGTTAACC+AGG - tig0020453:95795-95814 None:intergenic 35.0%
AATAATGTTGGCAAACTAGC+AGG - tig0020453:95834-95853 None:intergenic 35.0%
CACATTGTTGAAACATACAG+AGG + tig0020453:95992-96011 Msa1381800:CDS 35.0%
! AAGAAGTTTGCGGATTGAAA+TGG + tig0020453:96023-96042 Msa1381800:CDS 35.0%
AGATCATACATCTGCAGTAA+AGG + tig0020453:96156-96175 Msa1381800:CDS 35.0%
TTCATTCTTGTTCCATAGCA+GGG - tig0020453:96314-96333 None:intergenic 35.0%
TTTCATTCTTGTTCCATAGC+AGG - tig0020453:96315-96334 None:intergenic 35.0%
TGCTATGGAACAAGAATGAA+AGG + tig0020453:96314-96333 Msa1381800:CDS 35.0%
GCTATGGAACAAGAATGAAA+GGG + tig0020453:96315-96334 Msa1381800:CDS 35.0%
ATATCCTTCAATGGTGAAGA+TGG + tig0020453:96387-96406 Msa1381800:CDS 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG + tig0020453:96499-96518 Msa1381800:CDS 35.0%
GTAAAGGGCAGAAAATAACT+TGG - tig0020453:96629-96648 None:intergenic 35.0%
GTACTTTACAGTGGAGTAAA+GGG - tig0020453:96644-96663 None:intergenic 35.0%
ACCCCAACAAATAAAAGGAA+TGG + tig0020453:96929-96948 Msa1381800:three_prime_UTR 35.0%
CTGAAGAGGAAAACGTGATT+GGG - tig0020453:94397-94416 None:intergenic 40.0%
CTTACAGAGAAAGAGTTCCA+AGG + tig0020453:94422-94441 Msa1381800:CDS 40.0%
! TTGGGGGTTTTCTTAGATTG+TGG + tig0020453:94591-94610 Msa1381800:intron 40.0%
TCGGTATAAATCTGTCCAAC+TGG - tig0020453:94889-94908 None:intergenic 40.0%
AAATCCATCGCCGATCTATT+CGG - tig0020453:94908-94927 None:intergenic 40.0%
ATCAAATCAACTGGAGTAGG+TGG - tig0020453:95076-95095 None:intergenic 40.0%
GGAATCAAATCAACTGGAGT+AGG - tig0020453:95079-95098 None:intergenic 40.0%
GATGATGAAGTAAGCTCATG+AGG - tig0020453:95100-95119 None:intergenic 40.0%
AATAATTCGCCTGGGCTTTA+TGG - tig0020453:95140-95159 None:intergenic 40.0%
AGATTTCAGTAAGACACCTG+AGG - tig0020453:95163-95182 None:intergenic 40.0%
TAATAGTCATCCACAAGGTC+TGG - tig0020453:95536-95555 None:intergenic 40.0%
TGAGGTAATAGTCATCCACA+AGG - tig0020453:95541-95560 None:intergenic 40.0%
GGATACAGCTTCAGATAAAC+AGG + tig0020453:95757-95776 Msa1381800:CDS 40.0%
CTGCAGTTGAGAACTTTGAA+AGG + tig0020453:95866-95885 Msa1381800:intron 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG + tig0020453:95869-95888 Msa1381800:intron 40.0%
! GAACTTTGAAAGGTGGTCAT+AGG + tig0020453:95876-95895 Msa1381800:CDS 40.0%
AACAACCACATACTCACAAC+CGG + tig0020453:95923-95942 Msa1381800:CDS 40.0%
! AGTTTGCGGATTGAAATGGT+CGG + tig0020453:96027-96046 Msa1381800:CDS 40.0%
TAGATTATCATTCCCTCCAC+TGG - tig0020453:96071-96090 None:intergenic 40.0%
! GCGATCGAACAATCAAGTTT+TGG + tig0020453:96233-96252 Msa1381800:CDS 40.0%
!!! AAGTTTTGGAATACCCACAC+CGG + tig0020453:96247-96266 Msa1381800:CDS 40.0%
CACAGAATCAGCTAACACTT+TGG + tig0020453:96362-96381 Msa1381800:CDS 40.0%
! CAGACGAAACATTGAGGTTT+TGG + tig0020453:96488-96507 Msa1381800:CDS 40.0%
ATGTTACTGCTTAGCGAATG+CGG - tig0020453:96588-96607 None:intergenic 40.0%
GGTACTTTACAGTGGAGTAA+AGG - tig0020453:96645-96664 None:intergenic 40.0%
! TCCACTGTAAAGTACCTATG+AGG + tig0020453:96649-96668 Msa1381800:three_prime_UTR 40.0%
AGAACAAAGACCGATATACG+TGG - tig0020453:96800-96819 None:intergenic 40.0%
ATATTTGGGGACTGAATGAG+AGG - tig0020453:96872-96891 None:intergenic 40.0%
CTCTCTCTAACAATGGCTTC+AGG + tig0020453:94345-94364 Msa1381800:exon 45.0%
!! ACGTGATTGGGTTTTGATGG+CGG - tig0020453:94385-94404 None:intergenic 45.0%
CCTGAAGAGGAAAACGTGAT+TGG - tig0020453:94398-94417 None:intergenic 45.0%
! CCAATCACGTTTTCCTCTTC+AGG + tig0020453:94395-94414 Msa1381800:CDS 45.0%
CTCTGTAAGTGTTCCTGAAG+AGG - tig0020453:94411-94430 None:intergenic 45.0%
TATACCGAATAGATCGGCGA+TGG + tig0020453:94901-94920 Msa1381800:CDS 45.0%
CACACTACATGGTGACAGAA+GGG + tig0020453:94936-94955 Msa1381800:CDS 45.0%
ACACTACATGGTGACAGAAG+GGG + tig0020453:94937-94956 Msa1381800:CDS 45.0%
ACCTGAGGAATAATTCGCCT+GGG - tig0020453:95148-95167 None:intergenic 45.0%
! TCAGACTTCTGAGAGGACTT+TGG + tig0020453:95505-95524 Msa1381800:intron 45.0%
GTTACCGTCGAAGAAGAAGA+CGG + tig0020453:95656-95675 Msa1381800:CDS 45.0%
CCCAACTCACAGATGTGATA+GGG - tig0020453:95682-95701 None:intergenic 45.0%
CCCTATCACATCTGTGAGTT+GGG + tig0020453:95679-95698 Msa1381800:CDS 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG + tig0020453:95735-95754 Msa1381800:CDS 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG + tig0020453:95736-95755 Msa1381800:CDS 45.0%
! AATTTTACCGTCCATCCCTC+CGG - tig0020453:95945-95964 None:intergenic 45.0%
GGGCATGAACAAGAAGTTTG+CGG + tig0020453:96013-96032 Msa1381800:CDS 45.0%
GGATTGAAATGGTCGGCTAA+CGG + tig0020453:96034-96053 Msa1381800:CDS 45.0%
AACGGTCAACAATTAGCCAG+TGG + tig0020453:96052-96071 Msa1381800:CDS 45.0%
GTCAACAATTAGCCAGTGGA+GGG + tig0020453:96056-96075 Msa1381800:CDS 45.0%
! CTACTTTACATCTGGGACAG+AGG + tig0020453:96088-96107 Msa1381800:CDS 45.0%
!! CTTCTAGTTCTCCTACACAG+TGG + tig0020453:96119-96138 Msa1381800:CDS 45.0%
!! TTGCTTGGTGTCCATTCCAA+GGG + tig0020453:96182-96201 Msa1381800:CDS 45.0%
GCTAGCAAATTCCCTTGGAA+TGG - tig0020453:96196-96215 None:intergenic 45.0%
CAGTAGCTAGCAAATTCCCT+TGG - tig0020453:96201-96220 None:intergenic 45.0%
!! CAAGGGAATTTGCTAGCTAC+TGG + tig0020453:96199-96218 Msa1381800:CDS 45.0%
!! AATTTGCTAGCTACTGGTGG+AGG + tig0020453:96205-96224 Msa1381800:CDS 45.0%
CCATAGCAGGGAACATACTT+GGG - tig0020453:96302-96321 None:intergenic 45.0%
TCCATAGCAGGGAACATACT+TGG - tig0020453:96303-96322 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG - tig0020453:96394-96413 None:intergenic 45.0%
! GCAGCTTTTGCTACTACTTC+TGG - tig0020453:96529-96548 None:intergenic 45.0%
AATGGCTCAGCTCTTGCTTT+CGG - tig0020453:96553-96572 None:intergenic 45.0%
ATGCGGCTCACATGTGAAAA+TGG - tig0020453:96571-96590 None:intergenic 45.0%
GCCTCATAGGTACTTTACAG+TGG - tig0020453:96653-96672 None:intergenic 45.0%
!! CGTGATTGGGTTTTGATGGC+GGG - tig0020453:94384-94403 None:intergenic 50.0%
GCACACTACATGGTGACAGA+AGG + tig0020453:94935-94954 Msa1381800:CDS 50.0%
ATGGTGACAGAAGGGGCTAA+AGG + tig0020453:94944-94963 Msa1381800:CDS 50.0%
GACAGAAGGGGCTAAAGGTA+AGG + tig0020453:94949-94968 Msa1381800:CDS 50.0%
! TCCTGTACGCTTCTCTGGAA+GGG - tig0020453:94994-95013 None:intergenic 50.0%
TTCCTGTACGCTTCTCTGGA+AGG - tig0020453:94995-95014 None:intergenic 50.0%
TAGCTTCCTGTACGCTTCTC+TGG - tig0020453:94999-95018 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+TGG - tig0020453:95149-95168 None:intergenic 50.0%
GCCCTATCACATCTGTGAGT+TGG + tig0020453:95678-95697 Msa1381800:CDS 50.0%
GCCCAACTCACAGATGTGAT+AGG - tig0020453:95683-95702 None:intergenic 50.0%
ATGCCAATATGACGCCCATC+AGG - tig0020453:95707-95726 None:intergenic 50.0%
GATGGGCGTCATATTGGCAT+TGG + tig0020453:95707-95726 Msa1381800:CDS 50.0%
AACCACATACTCACAACCGG+AGG + tig0020453:95926-95945 Msa1381800:CDS 50.0%
ACCACATACTCACAACCGGA+GGG + tig0020453:95927-95946 Msa1381800:CDS 50.0%
GGTCAACAATTAGCCAGTGG+AGG + tig0020453:96055-96074 Msa1381800:CDS 50.0%
CTGCAGTAAAGGCTCTTGCT+TGG + tig0020453:96167-96186 Msa1381800:CDS 50.0%
!! CTTGCTTGGTGTCCATTCCA+AGG + tig0020453:96181-96200 Msa1381800:CDS 50.0%
!! GGGAATTTGCTAGCTACTGG+TGG + tig0020453:96202-96221 Msa1381800:CDS 50.0%
AACCGAGTTCAAGCATGCAC+CGG - tig0020453:96269-96288 None:intergenic 50.0%
TGCTTGAACTCGGTTGACAC+TGG + tig0020453:96274-96293 Msa1381800:CDS 50.0%
GCTTGAACTCGGTTGACACT+GGG + tig0020453:96275-96294 Msa1381800:CDS 50.0%
CCCAAGTATGTTCCCTGCTA+TGG + tig0020453:96299-96318 Msa1381800:CDS 50.0%
AGGGAGTTACTCAGCTCTCA+TGG + tig0020453:96334-96353 Msa1381800:CDS 50.0%
GTGAAGATGGCAGAGCTCAA+TGG + tig0020453:96400-96419 Msa1381800:CDS 50.0%
TCTTTATATGGCGCAGAGCC+CGG + tig0020453:96438-96457 Msa1381800:CDS 50.0%
CAGCAGCAGACGAAACATTG+AGG + tig0020453:96482-96501 Msa1381800:CDS 50.0%
CTATCTACGCGTTGCCTCAT+AGG - tig0020453:96666-96685 None:intergenic 50.0%
GGCAACGCGTAGATAGAAGA+TGG + tig0020453:96670-96689 Msa1381800:three_prime_UTR 50.0%
! ACAACACATGATTTGCCCCG+TGG + tig0020453:96747-96766 Msa1381800:three_prime_UTR 50.0%
CGATATACGTGGTTCGTCAC+GGG - tig0020453:96789-96808 None:intergenic 50.0%
CCGATATACGTGGTTCGTCA+CGG - tig0020453:96790-96809 None:intergenic 50.0%
CCGTGACGAACCACGTATAT+CGG + tig0020453:96787-96806 Msa1381800:three_prime_UTR 50.0%
! CCTGTACGCTTCTCTGGAAG+GGG - tig0020453:94993-95012 None:intergenic 55.0%
GCCCAGGCGAATTATTCCTC+AGG + tig0020453:95144-95163 Msa1381800:CDS 55.0%
TTTGGACGCTCCAGACCTTG+TGG + tig0020453:95523-95542 Msa1381800:CDS 55.0%
AGGGCCGTCTTCTTCTTCGA+CGG - tig0020453:95663-95682 None:intergenic 55.0%
! TCTGTGAGTTGGGCTCCTGA+TGG + tig0020453:95689-95708 Msa1381800:CDS 55.0%
! CTGTGAGTTGGGCTCCTGAT+GGG + tig0020453:95690-95709 Msa1381800:CDS 55.0%
! GCTCCTGATGGGCGTCATAT+TGG + tig0020453:95701-95720 Msa1381800:CDS 55.0%
GTGGTCATAGGCAGCGAGTA+GGG + tig0020453:95888-95907 Msa1381800:CDS 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG + tig0020453:95895-95914 Msa1381800:CDS 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG + tig0020453:95900-95919 Msa1381800:CDS 55.0%
TCCCTCCGGTTGTGAGTATG+TGG - tig0020453:95931-95950 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG + tig0020453:95931-95950 Msa1381800:CDS 55.0%
CTCCTACACAGTGGCTTCAC+AGG + tig0020453:96128-96147 Msa1381800:CDS 55.0%
AGCCTGTGAAGCCACTGTGT+AGG - tig0020453:96133-96152 None:intergenic 55.0%
! GTTCAAGCATGCACCGGTGT+GGG - tig0020453:96263-96282 None:intergenic 55.0%
! AGTTCAAGCATGCACCGGTG+TGG - tig0020453:96264-96283 None:intergenic 55.0%
CACCGGTGCATGCTTGAACT+CGG + tig0020453:96264-96283 Msa1381800:CDS 55.0%
TTGCCACTGTGCAACCATCC+GGG - tig0020453:96459-96478 None:intergenic 55.0%
GTTGCCACTGTGCAACCATC+CGG - tig0020453:96460-96479 None:intergenic 55.0%
TGGTGTGTGACTACGTCCAC+GGG - tig0020453:96766-96785 None:intergenic 55.0%
GTGGTGTGTGACTACGTCCA+CGG - tig0020453:96767-96786 None:intergenic 55.0%
TATACGTGGTTCGTCACGGG+TGG - tig0020453:96786-96805 None:intergenic 55.0%
! CTGGAAGGGGAGCACACTTC+TGG - tig0020453:94980-94999 None:intergenic 60.0%
! CCCCTTCCAGAGAAGCGTAC+AGG + tig0020453:94990-95009 Msa1381800:CDS 60.0%
GGTGGTCATAGGCAGCGAGT+AGG + tig0020453:95887-95906 Msa1381800:CDS 60.0%
CTCACAACCGGAGGGATGGA+CGG + tig0020453:95935-95954 Msa1381800:CDS 60.0%
CTAGCTACTGGTGGAGGCAG+TGG + tig0020453:96211-96230 Msa1381800:CDS 60.0%
TATATGGCGCAGAGCCCGGA+TGG + tig0020453:96442-96461 Msa1381800:CDS 60.0%
GGTGTGTGACTACGTCCACG+GGG - tig0020453:96765-96784 None:intergenic 60.0%
GAGCCCGGATGGTTGCACAG+TGG + tig0020453:96453-96472 Msa1381800:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0020453 gene 94094 96956 94094 ID=Msa1381800;Name=Msa1381800
tig0020453 mRNA 94094 96956 94094 ID=Msa1381800-mRNA-1;Parent=Msa1381800;Name=Msa1381800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=263|1|1|1|1|1|4|359|454
tig0020453 exon 94094 94449 94094 ID=Msa1381800-mRNA-1:exon:7740;Parent=Msa1381800-mRNA-1
tig0020453 exon 94890 95165 94890 ID=Msa1381800-mRNA-1:exon:7741;Parent=Msa1381800-mRNA-1
tig0020453 exon 95509 95778 95509 ID=Msa1381800-mRNA-1:exon:7742;Parent=Msa1381800-mRNA-1
tig0020453 exon 95872 96956 95872 ID=Msa1381800-mRNA-1:exon:7743;Parent=Msa1381800-mRNA-1
tig0020453 five_prime_UTR 94094 94356 94094 ID=Msa1381800-mRNA-1:five_prime_utr;Parent=Msa1381800-mRNA-1
tig0020453 CDS 94357 94449 94357 ID=Msa1381800-mRNA-1:cds;Parent=Msa1381800-mRNA-1
tig0020453 CDS 94890 95165 94890 ID=Msa1381800-mRNA-1:cds;Parent=Msa1381800-mRNA-1
tig0020453 CDS 95509 95778 95509 ID=Msa1381800-mRNA-1:cds;Parent=Msa1381800-mRNA-1
tig0020453 CDS 95872 96597 95872 ID=Msa1381800-mRNA-1:cds;Parent=Msa1381800-mRNA-1
tig0020453 three_prime_UTR 96598 96956 96598 ID=Msa1381800-mRNA-1:three_prime_utr;Parent=Msa1381800-mRNA-1
Gene Sequence

>Msa1381800

ATGGCTTCAGGTTCTTTGAGTTCTCCCGCCATCAAAACCCAATCACGTTTTCCTCTTCAGGAACACTTACAGAGAAAGAGTTCCAAGGAAAATTTGGACAGATTTATACCGAATAGATCGGCGATGGATTTCGATTATGCACACTACATGGTGACAGAAGGGGCTAAAGGTAAGGAAAATCCAGAAGTGTGCTCCCCTTCCAGAGAAGCGTACAGGAAGCTACTTGCAGAGTCTTTAAACATGAACAGGACCAGAATTCTAGCTTTCAAGAACAAGCCACCTACTCCAGTTGATTTGATTCCTCATGAGCTTACTTCATCATCTCTTCAACAAGATAAAACCATAAAGCCCAGGCGAATTATTCCTCAGACTTCTGAGAGGACTTTGGACGCTCCAGACCTTGTGGATGACTATTACCTCAATTTATTAGACTGGGGAAGCGCCAATGTTCTTGCAATAGCACTTGGAAACACAGTGTATTTGTGGGATGCATCAAATGGTTCTACTTCAGAACTTGTTACCGTCGAAGAAGAAGACGGCCCTATCACATCTGTGAGTTGGGCTCCTGATGGGCGTCATATTGGCATTGGTTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCAGATAAACAGTTGAGAACTTTGAAAGGTGGTCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAACCACATACTCACAACCGGAGGGATGGACGGTAAAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGAACAAGAAGTTTGCGGATTGAAATGGTCGGCTAACGGTCAACAATTAGCCAGTGGAGGGAATGATAATCTACTTTACATCTGGGACAGAGGTACATCAACTTCTAGTTCTCCTACACAGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAGGCTCTTGCTTGGTGTCCATTCCAAGGGAATTTGCTAGCTACTGGTGGAGGCAGTGGCGATCGAACAATCAAGTTTTGGAATACCCACACCGGTGCATGCTTGAACTCGGTTGACACTGGGTCCCAAGTATGTTCCCTGCTATGGAACAAGAATGAAAGGGAGTTACTCAGCTCTCATGGTTTTACACAGAATCAGCTAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAGCTCAATGGTCACACTTCAAGAGTTCTTTATATGGCGCAGAGCCCGGATGGTTGCACAGTGGCAACAGCAGCAGCAGACGAAACATTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGTAGCAAAAGCTGCACCGAAAGCAAGAGCTGAGCCATTTTCACATGTGAGCCGCATTCGCTAA

Protein sequence

>Msa1381800

MASGSLSSPAIKTQSRFPLQEHLQRKSSKENLDRFIPNRSAMDFDYAHYMVTEGAKGKENPEVCSPSREAYRKLLAESLNMNRTRILAFKNKPPTPVDLIPHELTSSSLQQDKTIKPRRIIPQTSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGSTSELVTVEEEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASDKQLRTLKGGHRQRVGSLAWNNHILTTGGMDGKIINNDVRIRAHIVETYRGHEQEVCGLKWSANGQQLASGGNDNLLYIWDRGTSTSSSPTQWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDRTIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLYMAQSPDGCTVATAAADETLRFWNAFGTPEVVAKAAPKARAEPFSHVSRIR*