AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750520 MtrunA17_Chr5g0395821 99.119 454 4 0 1 454 1 454 0.0 937
Msa0750520 MtrunA17_Chr3g0098921 91.503 459 34 4 1 454 1 459 0.0 872
Msa0750520 MtrunA17_Chr7g0267961 75.223 448 105 5 12 454 11 457 0.0 707
Msa0750520 MtrunA17_Chr7g0233651 66.966 445 126 7 15 454 3 431 0.0 591
Msa0750520 MtrunA17_Chr7g0235181 65.011 443 135 7 14 454 2 426 0.0 563
Msa0750520 MtrunA17_Chr7g0234591 61.607 448 147 8 17 454 4 436 0.0 537
Msa0750520 MtrunA17_Chr7g0228191 71.160 319 90 1 124 440 13 331 9.00e-173 488
Msa0750520 MtrunA17_Chr2g0330681 54.499 389 149 9 25 408 4 369 2.49e-131 384
Msa0750520 MtrunA17_Chr2g0330601 58.055 329 106 4 126 452 71 369 2.64e-127 374
Msa0750520 MtrunA17_Chr4g0057131 41.611 447 218 9 11 433 29 456 3.72e-113 341
Msa0750520 MtrunA17_Chr3g0111961 53.618 304 133 4 126 429 168 463 1.18e-112 340
Msa0750520 MtrunA17_Chr2g0308501 49.840 313 147 5 123 430 4 311 1.03e-107 322
Msa0750520 MtrunA17_Chr2g0281451 27.386 241 156 9 140 374 18 245 1.23e-17 85.9
Msa0750520 MtrunA17_Chr6g0448921 26.891 238 155 9 140 371 19 243 2.76e-15 78.6
Msa0750520 MtrunA17_Chr5g0401671 23.630 292 162 8 143 426 312 550 6.54e-15 77.0
Msa0750520 MtrunA17_Chr4g0053651 26.336 262 168 11 177 427 287 534 2.15e-14 75.5
Msa0750520 MtrunA17_Chr1g0176241 27.778 252 152 11 182 426 253 481 2.81e-14 74.7
Msa0750520 MtrunA17_Chr1g0176241 25.510 294 156 10 182 428 122 399 1.17e-13 72.8
Msa0750520 MtrunA17_Chr5g0401661 23.121 346 192 10 83 426 367 640 1.35e-13 73.2
Msa0750520 MtrunA17_Chr3g0136971 24.194 310 192 9 155 434 326 622 1.22e-12 70.1
Msa0750520 MtrunA17_Chr3g0136971 27.273 198 129 7 150 345 434 618 2.14e-12 69.3
Msa0750520 MtrunA17_Chr1g0172501 24.000 300 173 10 178 433 271 559 2.52e-12 68.9
Msa0750520 MtrunA17_Chr3g0093681 24.000 300 173 10 178 433 271 559 9.88e-12 67.0
Msa0750520 MtrunA17_Chr5g0405851 27.374 179 118 5 166 342 240 408 2.00e-11 65.9
Msa0750520 MtrunA17_Chr7g0253861 22.857 210 150 4 220 427 53 252 5.46e-11 63.9
Msa0750520 MtrunA17_Chr1g0185501 26.768 198 128 6 150 341 126 312 6.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750520 AT4G33270.1 79.778 450 89 2 7 454 8 457 0.0 759
Msa0750520 AT4G33260.1 80.317 442 85 2 15 454 6 447 0.0 737
Msa0750520 AT4G33260.2 80.535 411 78 2 15 423 6 416 0.0 701
Msa0750520 AT5G27570.1 69.623 451 130 5 7 454 4 450 0.0 642
Msa0750520 AT5G27080.1 69.585 434 126 4 23 454 13 442 0.0 623
Msa0750520 AT5G26900.1 68.578 436 132 3 20 454 13 444 0.0 612
Msa0750520 AT5G27945.1 62.634 372 123 5 95 454 61 428 1.46e-162 466
Msa0750520 AT4G22910.1 42.822 411 217 4 33 433 62 464 3.39e-115 347
Msa0750520 AT5G13840.1 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa0750520 AT5G13840.2 51.974 304 138 3 126 429 163 458 1.17e-110 335
Msa0750520 AT4G11920.1 41.556 450 227 9 5 433 22 456 2.36e-110 334
Msa0750520 AT1G11160.4 29.101 189 119 7 159 345 40 215 3.86e-16 81.6
Msa0750520 AT1G11160.2 29.101 189 119 7 159 345 40 215 4.24e-16 81.6
Msa0750520 AT1G11160.1 29.101 189 119 7 159 345 40 215 4.36e-16 81.6
Msa0750520 AT5G08390.1 26.891 238 155 9 140 371 19 243 9.51e-16 80.5
Msa0750520 AT1G61210.3 26.201 229 141 8 138 351 6 221 1.51e-15 80.1
Msa0750520 AT1G61210.2 26.201 229 141 8 138 351 6 221 1.71e-15 79.7
Msa0750520 AT1G61210.1 26.201 229 141 8 138 351 6 221 1.72e-15 79.7
Msa0750520 AT1G11160.3 29.341 167 105 6 181 345 18 173 1.98e-15 79.3
Msa0750520 AT5G23430.1 27.189 217 140 8 140 351 19 222 1.36e-14 76.6
Msa0750520 AT5G23430.3 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa0750520 AT5G23430.2 27.189 217 140 8 140 351 19 222 1.41e-14 76.6
Msa0750520 AT5G52820.1 27.451 255 152 12 182 428 244 473 7.98e-14 73.9
Msa0750520 AT5G25150.1 26.000 300 183 10 155 428 329 615 2.42e-13 72.8
Msa0750520 AT5G25150.1 27.551 196 127 7 150 343 433 615 1.97e-11 66.6
Msa0750520 AT5G25150.2 26.000 300 183 10 155 428 329 615 2.88e-13 72.4
Msa0750520 AT5G25150.2 27.551 196 127 7 150 343 433 615 2.18e-11 66.6
Msa0750520 AT3G49660.1 23.922 255 175 9 178 426 71 312 7.49e-13 69.7
Msa0750520 AT3G49660.1 25.373 201 125 9 150 341 128 312 9.93e-11 63.2
Msa0750520 AT5G56130.1 23.077 208 117 4 259 427 16 219 1.06e-11 66.2
Msa0750520 AT5G67320.1 24.221 289 166 12 143 427 330 569 1.55e-11 67.0
Msa0750520 AT2G41500.1 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa0750520 AT2G41500.2 25.614 285 153 11 149 430 311 539 1.60e-11 66.6
Msa0750520 AT5G16750.1 25.238 210 144 7 149 354 32 232 1.90e-11 67.0
Msa0750520 AT2G32700.6 24.453 274 180 13 159 426 532 784 4.42e-11 65.9
Msa0750520 AT2G32700.2 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0750520 AT2G32700.5 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0750520 AT2G32700.1 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0750520 AT2G32700.4 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0750520 AT2G32700.3 24.453 274 180 13 159 426 534 786 4.59e-11 65.5
Msa0750520 AT2G32700.7 24.453 274 180 13 159 426 553 805 5.19e-11 65.5
Msa0750520 AT5G13480.2 26.383 235 149 10 182 409 137 354 6.96e-11 65.1
Msa0750520 AT5G13480.4 26.383 235 149 10 182 409 114 331 8.20e-11 64.7
Msa0750520 AT5G13480.3 26.383 235 149 10 182 409 114 331 8.23e-11 64.7

Find 153 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCGCCTGGGCTTTA+TGG 0.172694 5_2:+3966154 None:intergenic
CAGACGAAACATTGAGGTTT+TGG 0.210103 5_2:-3964803 Msa0750520:CDS
AGATAGGAATTGTATGAATT+AGG 0.210843 5_2:+3967171 None:intergenic
CTGGAAGGGGAGCACACTTC+TGG 0.268112 5_2:+3966314 None:intergenic
GATAGGAATTGTATGAATTA+GGG 0.295845 5_2:+3967172 None:intergenic
TTAAAACCCCAACAAATAAA+AGG 0.309977 5_2:-3964367 Msa0750520:three_prime_UTR
CTCTCTCTAACAATGGCTTC+AGG 0.319079 5_2:-3966916 Msa0750520:exon
CTATCTACGCGTTGCCTCAT+AGG 0.321314 5_2:+3964628 None:intergenic
ATGCGGCTCACATGTGAAAA+TGG 0.326418 5_2:+3964723 None:intergenic
GTTCTTGAAAGCTAGAATTC+TGG 0.331154 5_2:+3966244 None:intergenic
ATGATAATCTACTTTACATC+TGG 0.357040 5_2:-3965211 Msa0750520:CDS
GCGATCGAACAATCAAGTTT+TGG 0.357857 5_2:-3965058 Msa0750520:CDS
TAGCTTCCTGTACGCTTCTC+TGG 0.359002 5_2:+3966295 None:intergenic
AATGGCTCAGCTCTTGCTTT+CGG 0.359726 5_2:+3964741 None:intergenic
CCCTATCACATCTGTGAGTT+GGG 0.371621 5_2:-3965612 Msa0750520:CDS
CACTTCAAGAGTTCTTTATA+TGG 0.372662 5_2:-3964865 Msa0750520:CDS
TCCATAGCAGGGAACATACT+TGG 0.385318 5_2:+3964991 None:intergenic
GTTGCCACTGTGCAACCATC+CGG 0.387110 5_2:+3964834 None:intergenic
AAATCCATCGCCGATCTATT+CGG 0.388532 5_2:+3966386 None:intergenic
GCTCCTGATGGGCGTCATAT+TGG 0.389395 5_2:-3965590 Msa0750520:CDS
CCTGAAGAGGAAAACGTGAT+TGG 0.389938 5_2:+3966866 None:intergenic
GGATACAGCTTCAGATAAAC+AGG 0.391975 5_2:-3965534 Msa0750520:intron
CAGAGTCTTTAAACATGAAC+AGG 0.397977 5_2:-3966268 Msa0750520:CDS
GAACTTTGAAAGGTGGTCAT+AGG 0.402652 5_2:-3965415 Msa0750520:CDS
ATTACCTCAATTTATTAGAC+TGG 0.406978 5_2:-3965739 Msa0750520:CDS
CTGAAGAGGAAAACGTGATT+GGG 0.412005 5_2:+3966867 None:intergenic
TCTGCCATCTTCACCATTGA+AGG 0.425176 5_2:+3964900 None:intergenic
AAGAAGTTTGCGGATTGAAA+TGG 0.432752 5_2:-3965268 Msa0750520:CDS
CCCAAGTATGTTCCCTGCTA+TGG 0.435862 5_2:-3964992 Msa0750520:CDS
TAGGCAGCGAGTAGGGTCTT+TGG 0.438523 5_2:-3965396 Msa0750520:CDS
TAATAGTCATCCACAAGGTC+TGG 0.439377 5_2:+3965758 None:intergenic
TTTCATTCTTGTTCCATAGC+AGG 0.442202 5_2:+3964979 None:intergenic
CACAGAATCAGCTAACACTT+TGG 0.446675 5_2:-3964929 Msa0750520:CDS
GCCCAACTCACAGATGTGAT+AGG 0.447194 5_2:+3965611 None:intergenic
GCCCTATCACATCTGTGAGT+TGG 0.447852 5_2:-3965613 Msa0750520:CDS
CAAGGGAATTTGCTAGCTAC+TGG 0.450097 5_2:-3965092 Msa0750520:CDS
CTTGCTTGGTGTCCATTCCA+AGG 0.450852 5_2:-3965110 Msa0750520:CDS
CTCTGTAAGTGTTCCTGAAG+AGG 0.453227 5_2:+3966853 None:intergenic
TGCTTGAACTCGGTTGACAC+TGG 0.455069 5_2:-3965017 Msa0750520:CDS
TCATGAGGAATCAAATCAAC+TGG 0.456090 5_2:+3966209 None:intergenic
TTGGAAACACAGTGTATTTG+TGG 0.457657 5_2:-3965688 Msa0750520:CDS
TCTTTATATGGCGCAGAGCC+CGG 0.458141 5_2:-3964853 Msa0750520:CDS
AGAGATTATATATAGCAGAT+AGG 0.460787 5_2:+3967155 None:intergenic
GTACTTTACAGTGGAGTAAA+GGG 0.462572 5_2:+3964650 None:intergenic
CTCCTACACAGTGGCTTCAC+AGG 0.468541 5_2:-3965163 Msa0750520:CDS
TGGTGTGTGACTACGTCCAC+GGG 0.468941 5_2:+3964528 None:intergenic
TCAGACTTCTGAGAGGACTT+TGG 0.470401 5_2:-3965786 Msa0750520:intron
TCCTGTACGCTTCTCTGGAA+GGG 0.470590 5_2:+3966300 None:intergenic
GATGGGCGTCATATTGGCAT+TGG 0.470950 5_2:-3965584 Msa0750520:CDS
GGTACTTTACAGTGGAGTAA+AGG 0.472946 5_2:+3964649 None:intergenic
TTTGAATGATGAGAGAAATG+AGG 0.475014 5_2:+3967131 None:intergenic
CTAGCTACTGGTGGAGGCAG+TGG 0.480596 5_2:-3965080 Msa0750520:CDS
CCGTGACGAACCACGTATAT+CGG 0.480622 5_2:-3964504 Msa0750520:three_prime_UTR
TTCATTCTTGTTCCATAGCA+GGG 0.481145 5_2:+3964980 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 5_2:-3965556 Msa0750520:CDS
ATGCCAATATGACGCCCATC+AGG 0.488601 5_2:+3965587 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 5_2:-3964913 Msa0750520:CDS
TTGAATGATGAGAGAAATGA+GGG 0.495853 5_2:+3967132 None:intergenic
ATATCCTTCAATGGTGAAGA+TGG 0.498891 5_2:-3964904 Msa0750520:CDS
AACAACCACATACTCACAAC+CGG 0.499451 5_2:-3965368 Msa0750520:CDS
TGCTATGGAACAAGAATGAA+AGG 0.505330 5_2:-3964977 Msa0750520:CDS
TTCCTGTACGCTTCTCTGGA+AGG 0.508481 5_2:+3966299 None:intergenic
GTGGTGTGTGACTACGTCCA+CGG 0.509034 5_2:+3964527 None:intergenic
TTGCCACTGTGCAACCATCC+GGG 0.511124 5_2:+3964835 None:intergenic
TTGCTTGGTGTCCATTCCAA+GGG 0.513094 5_2:-3965109 Msa0750520:CDS
TCTGTGAGTTGGGCTCCTGA+TGG 0.513830 5_2:-3965602 Msa0750520:CDS
CACCGGTGCATGCTTGAACT+CGG 0.514125 5_2:-3965027 Msa0750520:CDS
TTTCGATTATGCACACTACA+TGG 0.515001 5_2:-3966366 Msa0750520:CDS
CTGTGAGTTGGGCTCCTGAT+GGG 0.515660 5_2:-3965601 Msa0750520:CDS
CCCCTTCCAGAGAAGCGTAC+AGG 0.515877 5_2:-3966301 Msa0750520:CDS
CCGATATACGTGGTTCGTCA+CGG 0.520907 5_2:+3964504 None:intergenic
AGATCATACATCTGCAGTAA+AGG 0.521203 5_2:-3965135 Msa0750520:CDS
AGGGAGTTACTCAGCTCTCA+TGG 0.521335 5_2:-3964957 Msa0750520:CDS
CACCTGAGGAATAATTCGCC+TGG 0.521725 5_2:+3966145 None:intergenic
CACACTACATGGTGACAGAA+GGG 0.522072 5_2:-3966355 Msa0750520:CDS
GGGCATGAACAAGAAGTTTG+CGG 0.522362 5_2:-3965278 Msa0750520:CDS
TAGATTATCATTCCCTCCAC+TGG 0.527433 5_2:+3965223 None:intergenic
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 5_2:-3965425 Msa0750520:intron
TTACCTCAATTTATTAGACT+GGG 0.529967 5_2:-3965738 Msa0750520:CDS
AATGTTCTTGCAATAGCACT+TGG 0.530924 5_2:-3965707 Msa0750520:CDS
CCTGTACGCTTCTCTGGAAG+GGG 0.531549 5_2:+3966301 None:intergenic
ACCCCAACAAATAAAAGGAA+TGG 0.535284 5_2:-3964362 Msa0750520:three_prime_UTR
GCCCAGGCGAATTATTCCTC+AGG 0.535877 5_2:-3966147 Msa0750520:intron
GACAGAAGGGGCTAAAGGTA+AGG 0.539789 5_2:-3966342 Msa0750520:CDS
ATGGTGACAGAAGGGGCTAA+AGG 0.542605 5_2:-3966347 Msa0750520:CDS
GCTAGCAAATTCCCTTGGAA+TGG 0.543063 5_2:+3965098 None:intergenic
GCTTGAACTCGGTTGACACT+GGG 0.546774 5_2:-3965016 Msa0750520:CDS
ACCTGAGGAATAATTCGCCT+GGG 0.547062 5_2:+3966146 None:intergenic
TTTGGACGCTCCAGACCTTG+TGG 0.549436 5_2:-3965768 Msa0750520:CDS
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 5_2:-3965555 Msa0750520:CDS
CTGCAGTAAAGGCTCTTGCT+TGG 0.552397 5_2:-3965124 Msa0750520:CDS
GTGGTCATAGGCAGCGAGTA+GGG 0.553407 5_2:-3965403 Msa0750520:CDS
GGAATCAAATCAACTGGAGT+AGG 0.555155 5_2:+3966215 None:intergenic
GTTCAAGCATGCACCGGTGT+GGG 0.559486 5_2:+3965031 None:intergenic
GTGAAGATGGCAGAGCTCAA+TGG 0.559588 5_2:-3964891 Msa0750520:CDS
TGATAATCTACTTTACATCT+GGG 0.563072 5_2:-3965210 Msa0750520:CDS
ATATTTGGGGACTGAATGAG+AGG 0.567505 5_2:+3964422 None:intergenic
CCCAACTCACAGATGTGATA+GGG 0.567907 5_2:+3965612 None:intergenic
GCACACTACATGGTGACAGA+AGG 0.570973 5_2:-3966356 Msa0750520:CDS
CTACTTTACATCTGGGACAG+AGG 0.574017 5_2:-3965203 Msa0750520:CDS
TTCCCCAGTCTAATAAATTG+AGG 0.574191 5_2:+3965735 None:intergenic
GGCAACGCGTAGATAGAAGA+TGG 0.575004 5_2:-3964621 Msa0750520:three_prime_UTR
CATACTCACAACCGGAGGGA+TGG 0.577159 5_2:-3965360 Msa0750520:CDS
GATGATGAAGTAAGCTCATG+AGG 0.578213 5_2:+3966194 None:intergenic
TCCCTCCGGTTGTGAGTATG+TGG 0.579028 5_2:+3965363 None:intergenic
TATATGGCGCAGAGCCCGGA+TGG 0.579495 5_2:-3964849 Msa0750520:CDS
CGATATACGTGGTTCGTCAC+GGG 0.579804 5_2:+3964505 None:intergenic
TCCACTGTAAAGTACCTATG+AGG 0.581940 5_2:-3964642 Msa0750520:three_prime_UTR
CAGATTTATACCGAATAGAT+CGG 0.585167 5_2:-3966396 Msa0750520:CDS
TATTTGTGGGATGCATCAAA+TGG 0.585182 5_2:-3965674 Msa0750520:CDS
CAGTAGCTAGCAAATTCCCT+TGG 0.590454 5_2:+3965093 None:intergenic
CTCACAACCGGAGGGATGGA+CGG 0.590810 5_2:-3965356 Msa0750520:CDS
AACCGAGTTCAAGCATGCAC+CGG 0.591621 5_2:+3965025 None:intergenic
TGGAAACACAGTGTATTTGT+GGG 0.594599 5_2:-3965687 Msa0750520:CDS
GGTGGTCATAGGCAGCGAGT+AGG 0.596714 5_2:-3965404 Msa0750520:CDS
AATTTGCTAGCTACTGGTGG+AGG 0.597622 5_2:-3965086 Msa0750520:CDS
CAGCAGCAGACGAAACATTG+AGG 0.598798 5_2:-3964809 Msa0750520:CDS
GGGAATTTGCTAGCTACTGG+TGG 0.599431 5_2:-3965089 Msa0750520:CDS
TATACCGAATAGATCGGCGA+TGG 0.599857 5_2:-3966390 Msa0750520:CDS
ATCAAATCAACTGGAGTAGG+TGG 0.601482 5_2:+3966218 None:intergenic
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 5_2:-3965391 Msa0750520:CDS
TAACACGTTACAATGTACAT+AGG 0.602945 5_2:+3964579 None:intergenic
GGATTGAAATGGTCGGCTAA+CGG 0.603805 5_2:-3965257 Msa0750520:CDS
AGTTCAAGCATGCACCGGTG+TGG 0.604168 5_2:+3965030 None:intergenic
ATGTTACTGCTTAGCGAATG+CGG 0.605647 5_2:+3964706 None:intergenic
GTAAAGGGCAGAAAATAACT+TGG 0.606742 5_2:+3964665 None:intergenic
AAGATAAAACCATAAAGCCC+AGG 0.612129 5_2:-3966163 Msa0750520:CDS
CCATAGCAGGGAACATACTT+GGG 0.613427 5_2:+3964992 None:intergenic
AGGGCCGTCTTCTTCTTCGA+CGG 0.614774 5_2:+3965631 None:intergenic
AAGTGCTATTGCAAGAACAT+TGG 0.617527 5_2:+3965709 None:intergenic
CAGTTGAGAACTTTGAAAGG+TGG 0.617886 5_2:-3965422 Msa0750520:CDS
GTCAACAATTAGCCAGTGGA+GGG 0.619435 5_2:-3965235 Msa0750520:CDS
GGTCAACAATTAGCCAGTGG+AGG 0.633558 5_2:-3965236 Msa0750520:CDS
TACCTCAATTTATTAGACTG+GGG 0.642053 5_2:-3965737 Msa0750520:CDS
GCTATGGAACAAGAATGAAA+GGG 0.642631 5_2:-3964976 Msa0750520:CDS
ACCACATACTCACAACCGGA+GGG 0.650856 5_2:-3965364 Msa0750520:CDS
GCCTCATAGGTACTTTACAG+TGG 0.657693 5_2:+3964641 None:intergenic
TATACGTGGTTCGTCACGGG+TGG 0.660616 5_2:+3964508 None:intergenic
ACAACACATGATTTGCCCCG+TGG 0.662203 5_2:-3964544 Msa0750520:three_prime_UTR
AGCCTGTGAAGCCACTGTGT+AGG 0.662766 5_2:+3965161 None:intergenic
ACACTACATGGTGACAGAAG+GGG 0.666148 5_2:-3966354 Msa0750520:CDS
AACGGTCAACAATTAGCCAG+TGG 0.669539 5_2:-3965239 Msa0750520:CDS
CTTACAGAGAAAGAGTTCCA+AGG 0.680127 5_2:-3966839 Msa0750520:CDS
GTTACCGTCGAAGAAGAAGA+CGG 0.688864 5_2:-3965635 Msa0750520:CDS
ACATTGTTGAAACATACAGA+GGG 0.688874 5_2:-3965298 Msa0750520:CDS
AACCACATACTCACAACCGG+AGG 0.695066 5_2:-3965365 Msa0750520:CDS
CACATTGTTGAAACATACAG+AGG 0.702329 5_2:-3965299 Msa0750520:CDS
AGTTTGCGGATTGAAATGGT+CGG 0.710202 5_2:-3965264 Msa0750520:CDS
TGAGGTAATAGTCATCCACA+AGG 0.712406 5_2:+3965753 None:intergenic
AGAACAAAGACCGATATACG+TGG 0.737164 5_2:+3964494 None:intergenic
GGTGTGTGACTACGTCCACG+GGG 0.745352 5_2:+3964529 None:intergenic
CTTCTAGTTCTCCTACACAG+TGG 0.755247 5_2:-3965172 Msa0750520:CDS
GAGCCCGGATGGTTGCACAG+TGG 0.763260 5_2:-3964838 Msa0750520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATAAATTTTGAAATTT+TGG - chr5_2:3964838-3964857 Msa0750520:CDS 10.0%
!!! AGAATAAATTTTGAAATTTT+GGG - chr5_2:3964839-3964858 Msa0750520:CDS 10.0%
!! TTTATTAATTCTTAGTTAAA+AGG - chr5_2:3965525-3965544 Msa0750520:intron 10.0%
!! TTATTAATTCTTAGTTAAAA+GGG - chr5_2:3965526-3965545 Msa0750520:intron 10.0%
!!! TGATATGTTTTTATATATTT+GGG + chr5_2:3967122-3967141 None:intergenic 10.0%
!!! GGATTTTAATTATCAAATTT+TGG - chr5_2:3964773-3964792 Msa0750520:CDS 15.0%
!!! GAATAAATTTTGAAATTTTG+GGG - chr5_2:3964840-3964859 Msa0750520:CDS 15.0%
!!! AATAAATTTTGAAATTTTGG+GGG - chr5_2:3964841-3964860 Msa0750520:CDS 15.0%
!!! AGATTTTTAATTTTCGAATT+GGG - chr5_2:3964896-3964915 Msa0750520:CDS 15.0%
!! AATAACAATGATAAAACATA+AGG + chr5_2:3965432-3965451 None:intergenic 15.0%
!!! ATGTTTTATCATTGTTATTT+TGG - chr5_2:3965433-3965452 Msa0750520:intron 15.0%
!! ACTCATTCAAAATTTAAATT+TGG + chr5_2:3965478-3965497 None:intergenic 15.0%
!!! GATATGTTTTTATATATTTG+GGG + chr5_2:3967121-3967140 None:intergenic 15.0%
!!! CTGATATGTTTTTATATATT+TGG + chr5_2:3967123-3967142 None:intergenic 15.0%
!! TATTCAGATCTTTCAAAATT+AGG - chr5_2:3964734-3964753 Msa0750520:CDS 20.0%
!! ATTCAGATCTTTCAAAATTA+GGG - chr5_2:3964735-3964754 Msa0750520:CDS 20.0%
!!! ATTAGGGTTTTAATGTAAAT+TGG - chr5_2:3964751-3964770 Msa0750520:CDS 20.0%
!!! TTAGGGTTTTAATGTAAATT+GGG - chr5_2:3964752-3964771 Msa0750520:CDS 20.0%
!!! ATTATCAAATTTTGGTGTTT+TGG - chr5_2:3964781-3964800 Msa0750520:CDS 20.0%
!!! GAGATTTTTAATTTTCGAAT+TGG - chr5_2:3964895-3964914 Msa0750520:CDS 20.0%
!!! GATTTTTAATTTTCGAATTG+GGG - chr5_2:3964897-3964916 Msa0750520:CDS 20.0%
!!! ATTTTTAATTTTCGAATTGG+GGG - chr5_2:3964898-3964917 Msa0750520:CDS 20.0%
!! CACAAAATTGCAAAATATTA+TGG + chr5_2:3965698-3965717 None:intergenic 20.0%
! AGAGATTATATATAGCAGAT+AGG + chr5_2:3964375-3964394 None:intergenic 25.0%
!! TCTAATTCATTTCTTTTGCA+GGG - chr5_2:3964508-3964527 Msa0750520:three_prime_UTR 25.0%
!! AAATGTTCTTACATTTTCCT+TGG + chr5_2:3964708-3964727 None:intergenic 25.0%
! TTAGACTACTAATCCAATTA+TGG + chr5_2:3964807-3964826 None:intergenic 25.0%
!!! TCATTGTTATTTTGGTTCTT+TGG - chr5_2:3965441-3965460 Msa0750520:intron 25.0%
!!! AATGAGTTTTGAAAATCAAG+TGG - chr5_2:3965491-3965510 Msa0750520:intron 25.0%
!!! ATGAGTTTTGAAAATCAAGT+GGG - chr5_2:3965492-3965511 Msa0750520:intron 25.0%
!!! TTAGGTTTTTGAAATTCAAG+TGG - chr5_2:3965616-3965635 Msa0750520:CDS 25.0%
! ATTACCTCAATTTATTAGAC+TGG - chr5_2:3965788-3965807 Msa0750520:intron 25.0%
! TTACCTCAATTTATTAGACT+GGG - chr5_2:3965789-3965808 Msa0750520:intron 25.0%
!! AGGAATTTGATAGTTCATAA+AGG + chr5_2:3966050-3966069 None:intergenic 25.0%
! AAACCAAACAAGAATAATGT+TGG + chr5_2:3966082-3966101 None:intergenic 25.0%
! ATGATAATCTACTTTACATC+TGG - chr5_2:3966316-3966335 Msa0750520:CDS 25.0%
! TGATAATCTACTTTACATCT+GGG - chr5_2:3966317-3966336 Msa0750520:CDS 25.0%
! TTAAAACCCCAACAAATAAA+AGG - chr5_2:3967160-3967179 Msa0750520:five_prime_UTR 25.0%
!!! TTCCATTCCTTTTATTTGTT+GGG + chr5_2:3967170-3967189 None:intergenic 25.0%
!!! ATTCCATTCCTTTTATTTGT+TGG + chr5_2:3967171-3967190 None:intergenic 25.0%
TTGAATGATGAGAGAAATGA+GGG + chr5_2:3964398-3964417 None:intergenic 30.0%
TTTGAATGATGAGAGAAATG+AGG + chr5_2:3964399-3964418 None:intergenic 30.0%
! GTCTAATTCATTTCTTTTGC+AGG - chr5_2:3964507-3964526 Msa0750520:three_prime_UTR 30.0%
! TTCTTTTCTCTCTCTAACAA+TGG - chr5_2:3964604-3964623 Msa0750520:three_prime_UTR 30.0%
CAGATTTATACCGAATAGAT+CGG - chr5_2:3965131-3965150 Msa0750520:CDS 30.0%
CTTAGTTAAAAGGGTTTGTA+TGG - chr5_2:3965535-3965554 Msa0750520:CDS 30.0%
!! TCTTAGTTGAAAGTGTTGTA+TGG - chr5_2:3965659-3965678 Msa0750520:CDS 30.0%
TACCTCAATTTATTAGACTG+GGG - chr5_2:3965790-3965809 Msa0750520:intron 30.0%
AAGGTGTATTAATGTTAACC+AGG + chr5_2:3966031-3966050 None:intergenic 30.0%
TTGCCAACATTATTCTTGTT+TGG - chr5_2:3966076-3966095 Msa0750520:intron 30.0%
ACATTGTTGAAACATACAGA+GGG - chr5_2:3966229-3966248 Msa0750520:CDS 30.0%
! ACTTTGGAAATATCCTTCAA+TGG - chr5_2:3966614-3966633 Msa0750520:intron 30.0%
CACTTCAAGAGTTCTTTATA+TGG - chr5_2:3966662-3966681 Msa0750520:intron 30.0%
TAACACGTTACAATGTACAT+AGG + chr5_2:3966951-3966970 None:intergenic 30.0%
!!! TTTTAAAGTGAGCAAGCAAA+GGG + chr5_2:3967064-3967083 None:intergenic 30.0%
!!! TTTTTAAAGTGAGCAAGCAA+AGG + chr5_2:3967065-3967084 None:intergenic 30.0%
! GCTTGCTCACTTTAAAAATA+TGG - chr5_2:3967067-3967086 Msa0750520:five_prime_UTR 30.0%
!! TCCATTCCTTTTATTTGTTG+GGG + chr5_2:3967169-3967188 None:intergenic 30.0%
!! AAAACGTGATTGGGTTTTGA+TGG + chr5_2:3964654-3964673 None:intergenic 35.0%
!!! TTTGGTGTTTTGGCCATAAT+TGG - chr5_2:3964791-3964810 Msa0750520:CDS 35.0%
!! TTGATTTGTTTGTTGCCAGT+TGG - chr5_2:3965107-3965126 Msa0750520:CDS 35.0%
TTTCGATTATGCACACTACA+TGG - chr5_2:3965161-3965180 Msa0750520:CDS 35.0%
CAGAGTCTTTAAACATGAAC+AGG - chr5_2:3965259-3965278 Msa0750520:CDS 35.0%
GTTCTTGAAAGCTAGAATTC+TGG + chr5_2:3965286-3965305 None:intergenic 35.0%
TCATGAGGAATCAAATCAAC+TGG + chr5_2:3965321-3965340 None:intergenic 35.0%
AAGATAAAACCATAAAGCCC+AGG - chr5_2:3965364-3965383 Msa0750520:CDS 35.0%
!! TGTGCTAGTTGATGATTAGT+TGG - chr5_2:3965585-3965604 Msa0750520:CDS 35.0%
! GATTAGTTGGCTATCTGATT+AGG - chr5_2:3965598-3965617 Msa0750520:CDS 35.0%
!! TTGTTTTTCAGACTTCTGAG+AGG - chr5_2:3965734-3965753 Msa0750520:CDS 35.0%
TTCCCCAGTCTAATAAATTG+AGG + chr5_2:3965795-3965814 None:intergenic 35.0%
! AAGTGCTATTGCAAGAACAT+TGG + chr5_2:3965821-3965840 None:intergenic 35.0%
AATGTTCTTGCAATAGCACT+TGG - chr5_2:3965820-3965839 Msa0750520:intron 35.0%
TTGGAAACACAGTGTATTTG+TGG - chr5_2:3965839-3965858 Msa0750520:intron 35.0%
TGGAAACACAGTGTATTTGT+GGG - chr5_2:3965840-3965859 Msa0750520:intron 35.0%
TATTTGTGGGATGCATCAAA+TGG - chr5_2:3965853-3965872 Msa0750520:intron 35.0%
! AACAGGTTTTTACACTTACC+TGG - chr5_2:3966010-3966029 Msa0750520:intron 35.0%
AATAATGTTGGCAAACTAGC+AGG + chr5_2:3966070-3966089 None:intergenic 35.0%
CACATTGTTGAAACATACAG+AGG - chr5_2:3966228-3966247 Msa0750520:CDS 35.0%
! AAGAAGTTTGCGGATTGAAA+TGG - chr5_2:3966259-3966278 Msa0750520:CDS 35.0%
AGATCATACATCTGCAGTAA+AGG - chr5_2:3966392-3966411 Msa0750520:CDS 35.0%
TTCATTCTTGTTCCATAGCA+GGG + chr5_2:3966550-3966569 None:intergenic 35.0%
TTTCATTCTTGTTCCATAGC+AGG + chr5_2:3966551-3966570 None:intergenic 35.0%
TGCTATGGAACAAGAATGAA+AGG - chr5_2:3966550-3966569 Msa0750520:intron 35.0%
GCTATGGAACAAGAATGAAA+GGG - chr5_2:3966551-3966570 Msa0750520:intron 35.0%
ATATCCTTCAATGGTGAAGA+TGG - chr5_2:3966623-3966642 Msa0750520:intron 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG - chr5_2:3966735-3966754 Msa0750520:intron 35.0%
GTAAAGGGCAGAAAATAACT+TGG + chr5_2:3966865-3966884 None:intergenic 35.0%
GTACTTTACAGTGGAGTAAA+GGG + chr5_2:3966880-3966899 None:intergenic 35.0%
ACCCCAACAAATAAAAGGAA+TGG - chr5_2:3967165-3967184 Msa0750520:five_prime_UTR 35.0%
CTGAAGAGGAAAACGTGATT+GGG + chr5_2:3964663-3964682 None:intergenic 40.0%
CTTACAGAGAAAGAGTTCCA+AGG - chr5_2:3964688-3964707 Msa0750520:three_prime_UTR 40.0%
! TTGGGGGTTTTCTTAGATTG+TGG - chr5_2:3964857-3964876 Msa0750520:CDS 40.0%
TCGGTATAAATCTGTCCAAC+TGG + chr5_2:3965125-3965144 None:intergenic 40.0%
AAATCCATCGCCGATCTATT+CGG + chr5_2:3965144-3965163 None:intergenic 40.0%
ATCAAATCAACTGGAGTAGG+TGG + chr5_2:3965312-3965331 None:intergenic 40.0%
GGAATCAAATCAACTGGAGT+AGG + chr5_2:3965315-3965334 None:intergenic 40.0%
GATGATGAAGTAAGCTCATG+AGG + chr5_2:3965336-3965355 None:intergenic 40.0%
AATAATTCGCCTGGGCTTTA+TGG + chr5_2:3965376-3965395 None:intergenic 40.0%
AGATTTCAGTAACACACCTG+AGG + chr5_2:3965399-3965418 None:intergenic 40.0%
TAATAGTCATCCACAAGGTC+TGG + chr5_2:3965772-3965791 None:intergenic 40.0%
TGAGGTAATAGTCATCCACA+AGG + chr5_2:3965777-3965796 None:intergenic 40.0%
GGATACAGCTTCAGATAAAC+AGG - chr5_2:3965993-3966012 Msa0750520:intron 40.0%
CTGCAGTTGAGAACTTTGAA+AGG - chr5_2:3966102-3966121 Msa0750520:intron 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG - chr5_2:3966105-3966124 Msa0750520:intron 40.0%
! GAACTTTGAAAGGTGGTCAT+AGG - chr5_2:3966112-3966131 Msa0750520:intron 40.0%
AACAACCACATACTCACAAC+CGG - chr5_2:3966159-3966178 Msa0750520:CDS 40.0%
! AGTTTGCGGATTGAAATGGT+CGG - chr5_2:3966263-3966282 Msa0750520:CDS 40.0%
TAGATTATCATTCCCTCCAC+TGG + chr5_2:3966307-3966326 None:intergenic 40.0%
! GCGATCGAACAATCAAGTTT+TGG - chr5_2:3966469-3966488 Msa0750520:intron 40.0%
!!! AAGTTTTGGAATACCCACAC+CGG - chr5_2:3966483-3966502 Msa0750520:intron 40.0%
CACAGAATCAGCTAACACTT+TGG - chr5_2:3966598-3966617 Msa0750520:intron 40.0%
! CAGACGAAACATTGAGGTTT+TGG - chr5_2:3966724-3966743 Msa0750520:intron 40.0%
ATGTTACTGCTTAGCGAATG+CGG + chr5_2:3966824-3966843 None:intergenic 40.0%
GGTACTTTACAGTGGAGTAA+AGG + chr5_2:3966881-3966900 None:intergenic 40.0%
! TCCACTGTAAAGTACCTATG+AGG - chr5_2:3966885-3966904 Msa0750520:CDS 40.0%
AGAACAAAGACCGATATACG+TGG + chr5_2:3967036-3967055 None:intergenic 40.0%
ATATTTGGGGACTGAATGAG+AGG + chr5_2:3967108-3967127 None:intergenic 40.0%
CTCTCTCTAACAATGGCTTC+AGG - chr5_2:3964611-3964630 Msa0750520:three_prime_UTR 45.0%
!! ACGTGATTGGGTTTTGATGG+CGG + chr5_2:3964651-3964670 None:intergenic 45.0%
CCTGAAGAGGAAAACGTGAT+TGG + chr5_2:3964664-3964683 None:intergenic 45.0%
! CCAATCACGTTTTCCTCTTC+AGG - chr5_2:3964661-3964680 Msa0750520:three_prime_UTR 45.0%
CTCTGTAAGTGTTCCTGAAG+AGG + chr5_2:3964677-3964696 None:intergenic 45.0%
TATACCGAATAGATCGGCGA+TGG - chr5_2:3965137-3965156 Msa0750520:CDS 45.0%
CACACTACATGGTGACAGAA+GGG - chr5_2:3965172-3965191 Msa0750520:CDS 45.0%
ACACTACATGGTGACAGAAG+GGG - chr5_2:3965173-3965192 Msa0750520:CDS 45.0%
ACCTGAGGAATAATTCGCCT+GGG + chr5_2:3965384-3965403 None:intergenic 45.0%
! TCAGACTTCTGAGAGGACTT+TGG - chr5_2:3965741-3965760 Msa0750520:CDS 45.0%
GTTACCGTCGAAGAAGAAGA+CGG - chr5_2:3965892-3965911 Msa0750520:intron 45.0%
CCCAACTCACAGATGTGATA+GGG + chr5_2:3965918-3965937 None:intergenic 45.0%
CCCTATCACATCTGTGAGTT+GGG - chr5_2:3965915-3965934 Msa0750520:intron 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG - chr5_2:3965971-3965990 Msa0750520:intron 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG - chr5_2:3965972-3965991 Msa0750520:intron 45.0%
! AATTTTACCGTCCATCCCTC+CGG + chr5_2:3966181-3966200 None:intergenic 45.0%
GGGCATGAACAAGAAGTTTG+CGG - chr5_2:3966249-3966268 Msa0750520:CDS 45.0%
GGATTGAAATGGTCGGCTAA+CGG - chr5_2:3966270-3966289 Msa0750520:CDS 45.0%
AACGGTCAACAATTAGCCAG+TGG - chr5_2:3966288-3966307 Msa0750520:CDS 45.0%
GTCAACAATTAGCCAGTGGA+GGG - chr5_2:3966292-3966311 Msa0750520:CDS 45.0%
! CTACTTTACATCTGGGACAG+AGG - chr5_2:3966324-3966343 Msa0750520:CDS 45.0%
!! CTTCTAGTTCTCCTACACAG+TGG - chr5_2:3966355-3966374 Msa0750520:CDS 45.0%
!! TTGCTTGGTGTCCATTCCAA+GGG - chr5_2:3966418-3966437 Msa0750520:intron 45.0%
GCTAGCAAATTCCCTTGGAA+TGG + chr5_2:3966432-3966451 None:intergenic 45.0%
CAGTAGCTAGCAAATTCCCT+TGG + chr5_2:3966437-3966456 None:intergenic 45.0%
!! CAAGGGAATTTGCTAGCTAC+TGG - chr5_2:3966435-3966454 Msa0750520:intron 45.0%
!! AATTTGCTAGCTACTGGTGG+AGG - chr5_2:3966441-3966460 Msa0750520:intron 45.0%
CCATAGCAGGGAACATACTT+GGG + chr5_2:3966538-3966557 None:intergenic 45.0%
TCCATAGCAGGGAACATACT+TGG + chr5_2:3966539-3966558 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG + chr5_2:3966630-3966649 None:intergenic 45.0%
! GCAGCTTTTGCTACTACTTC+TGG + chr5_2:3966765-3966784 None:intergenic 45.0%
AATGGCTCAGCTCTTGCTTT+CGG + chr5_2:3966789-3966808 None:intergenic 45.0%
ATGCGGCTCACATGTGAAAA+TGG + chr5_2:3966807-3966826 None:intergenic 45.0%
GCCTCATAGGTACTTTACAG+TGG + chr5_2:3966889-3966908 None:intergenic 45.0%
!! CGTGATTGGGTTTTGATGGC+GGG + chr5_2:3964650-3964669 None:intergenic 50.0%
GCACACTACATGGTGACAGA+AGG - chr5_2:3965171-3965190 Msa0750520:CDS 50.0%
ATGGTGACAGAAGGGGCTAA+AGG - chr5_2:3965180-3965199 Msa0750520:CDS 50.0%
GACAGAAGGGGCTAAAGGTA+AGG - chr5_2:3965185-3965204 Msa0750520:CDS 50.0%
! TCCTGTACGCTTCTCTGGAA+GGG + chr5_2:3965230-3965249 None:intergenic 50.0%
TTCCTGTACGCTTCTCTGGA+AGG + chr5_2:3965231-3965250 None:intergenic 50.0%
TAGCTTCCTGTACGCTTCTC+TGG + chr5_2:3965235-3965254 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+TGG + chr5_2:3965385-3965404 None:intergenic 50.0%
GCCCTATCACATCTGTGAGT+TGG - chr5_2:3965914-3965933 Msa0750520:intron 50.0%
GCCCAACTCACAGATGTGAT+AGG + chr5_2:3965919-3965938 None:intergenic 50.0%
ATGCCAATATGACGCCCATC+AGG + chr5_2:3965943-3965962 None:intergenic 50.0%
GATGGGCGTCATATTGGCAT+TGG - chr5_2:3965943-3965962 Msa0750520:intron 50.0%
AACCACATACTCACAACCGG+AGG - chr5_2:3966162-3966181 Msa0750520:CDS 50.0%
ACCACATACTCACAACCGGA+GGG - chr5_2:3966163-3966182 Msa0750520:CDS 50.0%
GGTCAACAATTAGCCAGTGG+AGG - chr5_2:3966291-3966310 Msa0750520:CDS 50.0%
CTGCAGTAAAGGCTCTTGCT+TGG - chr5_2:3966403-3966422 Msa0750520:CDS 50.0%
!! CTTGCTTGGTGTCCATTCCA+AGG - chr5_2:3966417-3966436 Msa0750520:intron 50.0%
!! GGGAATTTGCTAGCTACTGG+TGG - chr5_2:3966438-3966457 Msa0750520:intron 50.0%
AACCGAGTTCAAGCATGCAC+CGG + chr5_2:3966505-3966524 None:intergenic 50.0%
TGCTTGAACTCGGTTGACAC+TGG - chr5_2:3966510-3966529 Msa0750520:intron 50.0%
GCTTGAACTCGGTTGACACT+GGG - chr5_2:3966511-3966530 Msa0750520:intron 50.0%
CCCAAGTATGTTCCCTGCTA+TGG - chr5_2:3966535-3966554 Msa0750520:intron 50.0%
AGGGAGTTACTCAGCTCTCA+TGG - chr5_2:3966570-3966589 Msa0750520:intron 50.0%
GTGAAGATGGCAGAGCTCAA+TGG - chr5_2:3966636-3966655 Msa0750520:intron 50.0%
TCTTTATATGGCGCAGAGCC+CGG - chr5_2:3966674-3966693 Msa0750520:intron 50.0%
CAGCAGCAGACGAAACATTG+AGG - chr5_2:3966718-3966737 Msa0750520:intron 50.0%
CTATCTACGCGTTGCCTCAT+AGG + chr5_2:3966902-3966921 None:intergenic 50.0%
GGCAACGCGTAGATAGAAGA+TGG - chr5_2:3966906-3966925 Msa0750520:CDS 50.0%
! ACAACACATGATTTGCCCCG+TGG - chr5_2:3966983-3967002 Msa0750520:five_prime_UTR 50.0%
CGATATACGTGGTTCGTCAC+GGG + chr5_2:3967025-3967044 None:intergenic 50.0%
CCGATATACGTGGTTCGTCA+CGG + chr5_2:3967026-3967045 None:intergenic 50.0%
CCGTGACGAACCACGTATAT+CGG - chr5_2:3967023-3967042 Msa0750520:five_prime_UTR 50.0%
! CCTGTACGCTTCTCTGGAAG+GGG + chr5_2:3965229-3965248 None:intergenic 55.0%
GCCCAGGCGAATTATTCCTC+AGG - chr5_2:3965380-3965399 Msa0750520:CDS 55.0%
TTTGGACGCTCCAGACCTTG+TGG - chr5_2:3965759-3965778 Msa0750520:CDS 55.0%
AGGGCCGTCTTCTTCTTCGA+CGG + chr5_2:3965899-3965918 None:intergenic 55.0%
! TCTGTGAGTTGGGCTCCTGA+TGG - chr5_2:3965925-3965944 Msa0750520:intron 55.0%
! CTGTGAGTTGGGCTCCTGAT+GGG - chr5_2:3965926-3965945 Msa0750520:intron 55.0%
! GCTCCTGATGGGCGTCATAT+TGG - chr5_2:3965937-3965956 Msa0750520:intron 55.0%
GTGGTCATAGGCAGCGAGTA+GGG - chr5_2:3966124-3966143 Msa0750520:intron 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG - chr5_2:3966131-3966150 Msa0750520:intron 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG - chr5_2:3966136-3966155 Msa0750520:intron 55.0%
TCCCTCCGGTTGTGAGTATG+TGG + chr5_2:3966167-3966186 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG - chr5_2:3966167-3966186 Msa0750520:CDS 55.0%
CTCCTACACAGTGGCTTCAC+AGG - chr5_2:3966364-3966383 Msa0750520:CDS 55.0%
AGCCTGTGAAGCCACTGTGT+AGG + chr5_2:3966369-3966388 None:intergenic 55.0%
! GTTCAAGCATGCACCGGTGT+GGG + chr5_2:3966499-3966518 None:intergenic 55.0%
! AGTTCAAGCATGCACCGGTG+TGG + chr5_2:3966500-3966519 None:intergenic 55.0%
CACCGGTGCATGCTTGAACT+CGG - chr5_2:3966500-3966519 Msa0750520:intron 55.0%
TTGCCACTGTGCAACCATCC+GGG + chr5_2:3966695-3966714 None:intergenic 55.0%
GTTGCCACTGTGCAACCATC+CGG + chr5_2:3966696-3966715 None:intergenic 55.0%
TGGTGTGTGACTACGTCCAC+GGG + chr5_2:3967002-3967021 None:intergenic 55.0%
GTGGTGTGTGACTACGTCCA+CGG + chr5_2:3967003-3967022 None:intergenic 55.0%
TATACGTGGTTCGTCACGGG+TGG + chr5_2:3967022-3967041 None:intergenic 55.0%
! CTGGAAGGGGAGCACACTTC+TGG + chr5_2:3965216-3965235 None:intergenic 60.0%
! CCCCTTCCAGAGAAGCGTAC+AGG - chr5_2:3965226-3965245 Msa0750520:CDS 60.0%
GGTGGTCATAGGCAGCGAGT+AGG - chr5_2:3966123-3966142 Msa0750520:intron 60.0%
CTCACAACCGGAGGGATGGA+CGG - chr5_2:3966171-3966190 Msa0750520:CDS 60.0%
CTAGCTACTGGTGGAGGCAG+TGG - chr5_2:3966447-3966466 Msa0750520:intron 60.0%
TATATGGCGCAGAGCCCGGA+TGG - chr5_2:3966678-3966697 Msa0750520:intron 60.0%
GGTGTGTGACTACGTCCACG+GGG + chr5_2:3967001-3967020 None:intergenic 60.0%
GAGCCCGGATGGTTGCACAG+TGG - chr5_2:3966689-3966708 Msa0750520:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3964357 3967192 3964357 ID=Msa0750520;Name=Msa0750520
chr5_2 mRNA 3964357 3967192 3964357 ID=Msa0750520-mRNA-1;Parent=Msa0750520;Name=Msa0750520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=266|1|1|1|1|1|4|359|454
chr5_2 exon 3964357 3965441 3964357 ID=Msa0750520-mRNA-1:exon:1484;Parent=Msa0750520-mRNA-1
chr5_2 exon 3965535 3965804 3965535 ID=Msa0750520-mRNA-1:exon:1483;Parent=Msa0750520-mRNA-1
chr5_2 exon 3966148 3966423 3966148 ID=Msa0750520-mRNA-1:exon:1482;Parent=Msa0750520-mRNA-1
chr5_2 exon 3966834 3967192 3966834 ID=Msa0750520-mRNA-1:exon:1481;Parent=Msa0750520-mRNA-1
chr5_2 five_prime_UTR 3966927 3967192 3966927 ID=Msa0750520-mRNA-1:five_prime_utr;Parent=Msa0750520-mRNA-1
chr5_2 CDS 3966834 3966926 3966834 ID=Msa0750520-mRNA-1:cds;Parent=Msa0750520-mRNA-1
chr5_2 CDS 3966148 3966423 3966148 ID=Msa0750520-mRNA-1:cds;Parent=Msa0750520-mRNA-1
chr5_2 CDS 3965535 3965804 3965535 ID=Msa0750520-mRNA-1:cds;Parent=Msa0750520-mRNA-1
chr5_2 CDS 3964716 3965441 3964716 ID=Msa0750520-mRNA-1:cds;Parent=Msa0750520-mRNA-1
chr5_2 three_prime_UTR 3964357 3964715 3964357 ID=Msa0750520-mRNA-1:three_prime_utr;Parent=Msa0750520-mRNA-1
Gene Sequence

>Msa0750520

ATGGCTTCAGGTTCTTTGAGTTCTCCCGCCATCAAAACCCAATCACGTTTTCCTCTTCAGGAACACTTACAGAGAAAGAGTTCCAAGGAAAATTTGGACAGATTTATACCGAATAGATCGGCGATGGATTTCGATTATGCACACTACATGGTGACAGAAGGGGCTAAAGGTAAGGAAAATCCAGAAGTGTGCTCCCCTTCCAGAGAAGCGTACAGGAAGCTACTTGCAGAGTCTTTAAACATGAACAGGACCAGAATTCTAGCTTTCAAGAACAAGCCACCTACTCCAGTTGATTTGATTCCTCATGAGCTTACTTCATCATCTCTTCAACAAGATAAAACCATAAAGCCCAGGCGAATTATTCCTCAGACTTCTGAGAGGACTTTGGACGCTCCAGACCTTGTGGATGACTATTACCTCAATTTATTAGACTGGGGAAGCGCCAATGTTCTTGCAATAGCACTTGGAAACACAGTGTATTTGTGGGATGCATCAAATGGTTCTACTTCAGAACTTGTTACCGTCGAAGAAGAAGACGGCCCTATCACATCTGTGAGTTGGGCTCCTGATGGGCGTCATATTGGCATTGGTTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCAGATAAACAGTTGAGAACTTTGAAAGGTGGTCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAACCACATACTCACAACCGGAGGGATGGACGGTAAAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGAACAAGAAGTTTGCGGATTGAAATGGTCGGCTAACGGTCAACAATTAGCCAGTGGAGGGAATGATAATCTACTTTACATCTGGGACAGAGGTACATCAACTTCTAGTTCTCCTACACAGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAGGCTCTTGCTTGGTGTCCATTCCAAGGGAATTTGCTAGCTACTGGTGGAGGCAGTGGCGATCGAACAATCAAGTTTTGGAATACCCACACCGGTGCATGCTTGAACTCGGTTGACACTGGGTCCCAAGTATGTTCCCTGCTATGGAACAAGAATGAAAGGGAGTTACTCAGCTCTCATGGTTTTACACAGAATCAGCTAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAGCTCAATGGTCACACTTCAAGAGTTCTTTATATGGCGCAGAGCCCGGATGGTTGCACAGTGGCAACAGCAGCAGCAGACGAAACATTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGTAGCAAAAGCTGCACCGAAAGCAAGAGCTGAGCCATTTTCACATGTGAGCCGCATTCGCTAA

Protein sequence

>Msa0750520

MASGSLSSPAIKTQSRFPLQEHLQRKSSKENLDRFIPNRSAMDFDYAHYMVTEGAKGKENPEVCSPSREAYRKLLAESLNMNRTRILAFKNKPPTPVDLIPHELTSSSLQQDKTIKPRRIIPQTSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGSTSELVTVEEEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASDKQLRTLKGGHRQRVGSLAWNNHILTTGGMDGKIINNDVRIRAHIVETYRGHEQEVCGLKWSANGQQLASGGNDNLLYIWDRGTSTSSSPTQWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDRTIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLYMAQSPDGCTVATAAADETLRFWNAFGTPEVVAKAAPKARAEPFSHVSRIR*