Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896890 | GAU35569.1 | 76.965 | 369 | 84 | 1 | 1 | 369 | 64 | 431 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896890 | A0A2Z6NVK3 | 76.965 | 369 | 84 | 1 | 1 | 369 | 64 | 431 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047110 | Msa0896890 | 0.801248 | 9.848417e-49 | -8.615850e-47 |
| Msa0661650 | Msa0896890 | 0.803424 | 3.509954e-49 | -8.615850e-47 |
| Msa0760130 | Msa0896890 | 0.800518 | 1.387805e-48 | -8.615850e-47 |
| Msa0780360 | Msa0896890 | 0.814021 | 1.904085e-51 | -8.615850e-47 |
| Msa0796690 | Msa0896890 | 0.813938 | 1.986848e-51 | -8.615850e-47 |
| Msa0594560 | Msa0896890 | 0.805476 | 1.310694e-49 | -8.615850e-47 |
| Msa0896890 | Msa0903370 | 0.800144 | 1.654494e-48 | -8.615850e-47 |
| Msa0896890 | Msa0943190 | 0.801130 | 1.041239e-48 | -8.615850e-47 |
| Msa0896890 | Msa0962340 | 0.812382 | 4.361684e-51 | -8.615850e-47 |
| Msa0896890 | Msa0973600 | 0.812390 | 4.343586e-51 | -8.615850e-47 |
| Msa0896890 | Msa0974080 | 0.813217 | 2.862774e-51 | -8.615850e-47 |
| Msa0896890 | Msa1075650 | 0.808723 | 2.691668e-50 | -8.615850e-47 |
| Msa0896890 | Msa1130550 | 0.814214 | 1.726801e-51 | -8.615850e-47 |
| Msa0896890 | Msa1210110 | 0.806571 | 7.709644e-50 | -8.615850e-47 |
| Msa0896890 | Msa1394380 | 0.805047 | 1.611839e-49 | -8.615850e-47 |
| Msa0896890 | Msa1436480 | 0.802839 | 4.637462e-49 | -8.615850e-47 |
| Msa0896890 | Msa1461550 | 0.803409 | 3.534115e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896890 | MtrunA17_Chr6g0482091 | 41.569 | 255 | 144 | 3 | 116 | 365 | 156 | 410 | 9.07e-54 | 183 |
| Msa0896890 | MtrunA17_Chr6g0482111 | 37.729 | 273 | 167 | 2 | 92 | 361 | 1194 | 1466 | 4.52e-47 | 171 |
| Msa0896890 | MtrunA17_Chr3g0081531 | 41.949 | 236 | 134 | 2 | 131 | 363 | 1156 | 1391 | 5.50e-46 | 168 |
| Msa0896890 | MtrunA17_Chr6g0482261 | 35.470 | 234 | 145 | 1 | 130 | 363 | 8 | 235 | 2.69e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTTGCCTGAGAATTTA+AGG | 0.141317 | 6_1:+88061075 | Msa0896890:CDS |
| CAGAATTTCCAAGGCTTTCT+TGG | 0.181579 | 6_1:-88061842 | None:intergenic |
| TCACATTCATGCAGTTTAAT+TGG | 0.185572 | 6_1:-88061307 | None:intergenic |
| AGCTATATGGTGATAGAATT+TGG | 0.209577 | 6_1:+88061264 | Msa0896890:CDS |
| GGGAAGCCAACTAGTTTATT+TGG | 0.226997 | 6_1:+88062161 | Msa0896890:CDS |
| TACAAGTGATGATTCAAAAT+TGG | 0.249810 | 6_1:+88061795 | Msa0896890:CDS |
| TCAGAAATGCTTGAAGTTAA+TGG | 0.261018 | 6_1:+88061152 | Msa0896890:CDS |
| ATTTGTTCATCTGATATTTC+AGG | 0.331132 | 6_1:-88061101 | None:intergenic |
| TGCATGAATGTGAAGAATAA+AGG | 0.378043 | 6_1:+88061317 | Msa0896890:CDS |
| TTTGCCGAGTCGTCAAGAAT+TGG | 0.399003 | 6_1:+88061690 | Msa0896890:CDS |
| GCTATATGGTGATAGAATTT+GGG | 0.406693 | 6_1:+88061265 | Msa0896890:CDS |
| TTTCTTCCAAATAAACTAGT+TGG | 0.410595 | 6_1:-88062167 | None:intergenic |
| ATTCCCAAGTTATCTTCATA+AGG | 0.415474 | 6_1:-88061044 | None:intergenic |
| TCATTAGATATGCAGCTATA+TGG | 0.416306 | 6_1:+88061251 | Msa0896890:CDS |
| TTGACACAAATTCTCTGAAC+TGG | 0.417086 | 6_1:-88062125 | None:intergenic |
| TCAGGCAGCCTTAAATTCTC+AGG | 0.433284 | 6_1:-88061083 | None:intergenic |
| GCTTTCTTGGTTTCTTCACT+CGG | 0.437063 | 6_1:-88061829 | None:intergenic |
| AATTGGCATTCTAATAGCAT+TGG | 0.442766 | 6_1:-88061290 | None:intergenic |
| ATGTCCTTATGAAGATAACT+TGG | 0.452853 | 6_1:+88061040 | Msa0896890:CDS |
| GTGTCAATAGAGAGTGAGTT+GGG | 0.459553 | 6_1:+88062141 | Msa0896890:CDS |
| TTCATGGATGTTGATGATGT+TGG | 0.501106 | 6_1:-88061904 | None:intergenic |
| GGCTCCAATTCTTGACGACT+CGG | 0.515083 | 6_1:-88061694 | None:intergenic |
| GTTGAGAGCGGAGCAAGAAT+CGG | 0.515197 | 6_1:+88062347 | Msa0896890:CDS |
| ATGATGTTGGTTCTATAAGA+TGG | 0.517758 | 6_1:-88061891 | None:intergenic |
| TGTCAATCACTGCAGTGGCT+AGG | 0.521011 | 6_1:+88062235 | Msa0896890:CDS |
| GTCAATCACTGCAGTGGCTA+GGG | 0.524146 | 6_1:+88062236 | Msa0896890:CDS |
| AAAAGAGAAACATTTGAAGC+AGG | 0.526242 | 6_1:+88062276 | Msa0896890:CDS |
| TGAAGAAACCAAGAAAGCCT+TGG | 0.537656 | 6_1:+88061834 | Msa0896890:CDS |
| GATGGCACATTTGTTTAGAG+AGG | 0.542801 | 6_1:-88061873 | None:intergenic |
| GAGTTCTTTCAGAATTTCCA+AGG | 0.547092 | 6_1:-88061851 | None:intergenic |
| GAATCGGCTAAGGCTACTAA+AGG | 0.551085 | 6_1:+88062363 | Msa0896890:CDS |
| GAGATGAGTTGAGGAAGCGA+AGG | 0.558651 | 6_1:+88062319 | Msa0896890:CDS |
| TGTGTCAATAGAGAGTGAGT+TGG | 0.565145 | 6_1:+88062140 | Msa0896890:CDS |
| AAGCTCAAAGAGATGAGTTG+AGG | 0.595628 | 6_1:+88062310 | Msa0896890:CDS |
| AGCGGAGCAAGAATCGGCTA+AGG | 0.595913 | 6_1:+88062353 | Msa0896890:CDS |
| GCGAAGGTTGCGGTTGAGAG+CGG | 0.597545 | 6_1:+88062335 | Msa0896890:CDS |
| AGTTGAGGAAGCGAAGGTTG+CGG | 0.602172 | 6_1:+88062325 | Msa0896890:CDS |
| ATGAAGCATATGTCTCAGCA+TGG | 0.619026 | 6_1:-88061765 | None:intergenic |
| TGTCCTTATGAAGATAACTT+GGG | 0.620604 | 6_1:+88061041 | Msa0896890:CDS |
| AAGGATACATTGAGGATGAG+TGG | 0.620800 | 6_1:+88062382 | Msa0896890:CDS |
| AGCATATGTCTCAGCATGGA+GGG | 0.627120 | 6_1:-88061761 | None:intergenic |
| AAACATGTCAATCACTGCAG+TGG | 0.650335 | 6_1:+88062230 | Msa0896890:CDS |
| GGCTACTAAAGGATACATTG+AGG | 0.656887 | 6_1:+88062374 | Msa0896890:CDS |
| CAGATGATGATGTTTCGATG+AGG | 0.669938 | 6_1:+88061959 | Msa0896890:CDS |
| AAGCATATGTCTCAGCATGG+AGG | 0.675214 | 6_1:-88061762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTTGTTCATCTGATATTTC+AGG | - | chr6_1:88061104-88061123 | None:intergenic | 25.0% |
| ! | AACTTCATTGTCAATTGAAA+TGG | + | chr6_1:88061358-88061377 | Msa0896890:intron | 25.0% |
| ! | AGTGAAACAAAAGATAGTAA+GGG | - | chr6_1:88061393-88061412 | None:intergenic | 25.0% |
| ! | AAGTGAAACAAAAGATAGTA+AGG | - | chr6_1:88061394-88061413 | None:intergenic | 25.0% |
| ! | TAATGATTACGTTCAGTATA+TGG | + | chr6_1:88061516-88061535 | Msa0896890:intron | 25.0% |
| ! | CATATGTTAATCATCTAATC+TGG | - | chr6_1:88061631-88061650 | None:intergenic | 25.0% |
| ! | TACAAGTGATGATTCAAAAT+TGG | + | chr6_1:88061795-88061814 | Msa0896890:CDS | 25.0% |
| !! | ATATTGCAAAGTAGTTTTCA+TGG | - | chr6_1:88061923-88061942 | None:intergenic | 25.0% |
| ! | TTTCTTCCAAATAAACTAGT+TGG | - | chr6_1:88062170-88062189 | None:intergenic | 25.0% |
| ! | ATTTGTTCATCTGATATTTC+AGG | - | chr6_1:88061104-88061123 | None:intergenic | 25.0% |
| ! | AACTTCATTGTCAATTGAAA+TGG | + | chr6_1:88061358-88061377 | Msa0896890:intron | 25.0% |
| ! | AGTGAAACAAAAGATAGTAA+GGG | - | chr6_1:88061393-88061412 | None:intergenic | 25.0% |
| ! | AAGTGAAACAAAAGATAGTA+AGG | - | chr6_1:88061394-88061413 | None:intergenic | 25.0% |
| ! | TAATGATTACGTTCAGTATA+TGG | + | chr6_1:88061516-88061535 | Msa0896890:intron | 25.0% |
| ! | CATATGTTAATCATCTAATC+TGG | - | chr6_1:88061631-88061650 | None:intergenic | 25.0% |
| ! | TACAAGTGATGATTCAAAAT+TGG | + | chr6_1:88061795-88061814 | Msa0896890:CDS | 25.0% |
| !! | ATATTGCAAAGTAGTTTTCA+TGG | - | chr6_1:88061923-88061942 | None:intergenic | 25.0% |
| ! | TTTCTTCCAAATAAACTAGT+TGG | - | chr6_1:88062170-88062189 | None:intergenic | 25.0% |
| ! | TGGATAACACACAATTTTCT+AGG | + | chr6_1:88061000-88061019 | Msa0896890:CDS | 30.0% |
| ! | GGATAACACACAATTTTCTA+GGG | + | chr6_1:88061001-88061020 | Msa0896890:CDS | 30.0% |
| ATGTCCTTATGAAGATAACT+TGG | + | chr6_1:88061040-88061059 | Msa0896890:CDS | 30.0% | |
| TGTCCTTATGAAGATAACTT+GGG | + | chr6_1:88061041-88061060 | Msa0896890:CDS | 30.0% | |
| ATTCCCAAGTTATCTTCATA+AGG | - | chr6_1:88061047-88061066 | None:intergenic | 30.0% | |
| TCAGAAATGCTTGAAGTTAA+TGG | + | chr6_1:88061152-88061171 | Msa0896890:CDS | 30.0% | |
| TCATTAGATATGCAGCTATA+TGG | + | chr6_1:88061251-88061270 | Msa0896890:CDS | 30.0% | |
| AGCTATATGGTGATAGAATT+TGG | + | chr6_1:88061264-88061283 | Msa0896890:CDS | 30.0% | |
| GCTATATGGTGATAGAATTT+GGG | + | chr6_1:88061265-88061284 | Msa0896890:CDS | 30.0% | |
| AATTGGCATTCTAATAGCAT+TGG | - | chr6_1:88061293-88061312 | None:intergenic | 30.0% | |
| TCACATTCATGCAGTTTAAT+TGG | - | chr6_1:88061310-88061329 | None:intergenic | 30.0% | |
| TGCATGAATGTGAAGAATAA+AGG | + | chr6_1:88061317-88061336 | Msa0896890:CDS | 30.0% | |
| CACAAAATTGACAACGAATT+TGG | + | chr6_1:88061488-88061507 | Msa0896890:intron | 30.0% | |
| TGTTAATCATCTAATCTGGA+TGG | - | chr6_1:88061627-88061646 | None:intergenic | 30.0% | |
| TCATCACTAAAAAGTTCTTC+TGG | - | chr6_1:88061718-88061737 | None:intergenic | 30.0% | |
| !! | ATGATGTTGGTTCTATAAGA+TGG | - | chr6_1:88061894-88061913 | None:intergenic | 30.0% |
| AAAGCTACAAAAACTTGAAG+AGG | + | chr6_1:88062083-88062102 | Msa0896890:CDS | 30.0% | |
| AAGCTACAAAAACTTGAAGA+GGG | + | chr6_1:88062084-88062103 | Msa0896890:CDS | 30.0% | |
| ! | AAAAGAGAAACATTTGAAGC+AGG | + | chr6_1:88062276-88062295 | Msa0896890:CDS | 30.0% |
| ! | TGGATAACACACAATTTTCT+AGG | + | chr6_1:88061000-88061019 | Msa0896890:CDS | 30.0% |
| ! | GGATAACACACAATTTTCTA+GGG | + | chr6_1:88061001-88061020 | Msa0896890:CDS | 30.0% |
| ATGTCCTTATGAAGATAACT+TGG | + | chr6_1:88061040-88061059 | Msa0896890:CDS | 30.0% | |
| TGTCCTTATGAAGATAACTT+GGG | + | chr6_1:88061041-88061060 | Msa0896890:CDS | 30.0% | |
| ATTCCCAAGTTATCTTCATA+AGG | - | chr6_1:88061047-88061066 | None:intergenic | 30.0% | |
| TCAGAAATGCTTGAAGTTAA+TGG | + | chr6_1:88061152-88061171 | Msa0896890:CDS | 30.0% | |
| TCATTAGATATGCAGCTATA+TGG | + | chr6_1:88061251-88061270 | Msa0896890:CDS | 30.0% | |
| AGCTATATGGTGATAGAATT+TGG | + | chr6_1:88061264-88061283 | Msa0896890:CDS | 30.0% | |
| GCTATATGGTGATAGAATTT+GGG | + | chr6_1:88061265-88061284 | Msa0896890:CDS | 30.0% | |
| AATTGGCATTCTAATAGCAT+TGG | - | chr6_1:88061293-88061312 | None:intergenic | 30.0% | |
| TCACATTCATGCAGTTTAAT+TGG | - | chr6_1:88061310-88061329 | None:intergenic | 30.0% | |
| TGCATGAATGTGAAGAATAA+AGG | + | chr6_1:88061317-88061336 | Msa0896890:CDS | 30.0% | |
| CACAAAATTGACAACGAATT+TGG | + | chr6_1:88061488-88061507 | Msa0896890:intron | 30.0% | |
| TGTTAATCATCTAATCTGGA+TGG | - | chr6_1:88061627-88061646 | None:intergenic | 30.0% | |
| TCATCACTAAAAAGTTCTTC+TGG | - | chr6_1:88061718-88061737 | None:intergenic | 30.0% | |
| !! | ATGATGTTGGTTCTATAAGA+TGG | - | chr6_1:88061894-88061913 | None:intergenic | 30.0% |
| AAAGCTACAAAAACTTGAAG+AGG | + | chr6_1:88062083-88062102 | Msa0896890:CDS | 30.0% | |
| AAGCTACAAAAACTTGAAGA+GGG | + | chr6_1:88062084-88062103 | Msa0896890:CDS | 30.0% | |
| ! | AAAAGAGAAACATTTGAAGC+AGG | + | chr6_1:88062276-88062295 | Msa0896890:CDS | 30.0% |
| AAAATCTAGGTAGGCTTGTA+GGG | - | chr6_1:88061417-88061436 | None:intergenic | 35.0% | |
| CAGTTCAAGAAAATCTAGGT+AGG | - | chr6_1:88061426-88061445 | None:intergenic | 35.0% | |
| AGTGCAGTTCAAGAAAATCT+AGG | - | chr6_1:88061430-88061449 | None:intergenic | 35.0% | |
| TTGTCTGCAGGAAGAAATTT+AGG | - | chr6_1:88061667-88061686 | None:intergenic | 35.0% | |
| GAGTTCTTTCAGAATTTCCA+AGG | - | chr6_1:88061854-88061873 | None:intergenic | 35.0% | |
| !! | TTCATGGATGTTGATGATGT+TGG | - | chr6_1:88061907-88061926 | None:intergenic | 35.0% |
| !! | TTTTAGCTGACTTTACTCAG+TGG | + | chr6_1:88062004-88062023 | Msa0896890:CDS | 35.0% |
| TTGACACAAATTCTCTGAAC+TGG | - | chr6_1:88062128-88062147 | None:intergenic | 35.0% | |
| AAAATCTAGGTAGGCTTGTA+GGG | - | chr6_1:88061417-88061436 | None:intergenic | 35.0% | |
| CAGTTCAAGAAAATCTAGGT+AGG | - | chr6_1:88061426-88061445 | None:intergenic | 35.0% | |
| AGTGCAGTTCAAGAAAATCT+AGG | - | chr6_1:88061430-88061449 | None:intergenic | 35.0% | |
| TTGTCTGCAGGAAGAAATTT+AGG | - | chr6_1:88061667-88061686 | None:intergenic | 35.0% | |
| GAGTTCTTTCAGAATTTCCA+AGG | - | chr6_1:88061854-88061873 | None:intergenic | 35.0% | |
| !! | TTCATGGATGTTGATGATGT+TGG | - | chr6_1:88061907-88061926 | None:intergenic | 35.0% |
| !! | TTTTAGCTGACTTTACTCAG+TGG | + | chr6_1:88062004-88062023 | Msa0896890:CDS | 35.0% |
| TTGACACAAATTCTCTGAAC+TGG | - | chr6_1:88062128-88062147 | None:intergenic | 35.0% | |
| GCATCTTGCCTGAGAATTTA+AGG | + | chr6_1:88061075-88061094 | Msa0896890:CDS | 40.0% | |
| GAAAATCTAGGTAGGCTTGT+AGG | - | chr6_1:88061418-88061437 | None:intergenic | 40.0% | |
| ATGAAGCATATGTCTCAGCA+TGG | - | chr6_1:88061768-88061787 | None:intergenic | 40.0% | |
| GCTTTCTTGGTTTCTTCACT+CGG | - | chr6_1:88061832-88061851 | None:intergenic | 40.0% | |
| TGAAGAAACCAAGAAAGCCT+TGG | + | chr6_1:88061834-88061853 | Msa0896890:CDS | 40.0% | |
| CAGAATTTCCAAGGCTTTCT+TGG | - | chr6_1:88061845-88061864 | None:intergenic | 40.0% | |
| GATGGCACATTTGTTTAGAG+AGG | - | chr6_1:88061876-88061895 | None:intergenic | 40.0% | |
| ! | CAGATGATGATGTTTCGATG+AGG | + | chr6_1:88061959-88061978 | Msa0896890:CDS | 40.0% |
| TGTGTCAATAGAGAGTGAGT+TGG | + | chr6_1:88062140-88062159 | Msa0896890:CDS | 40.0% | |
| GTGTCAATAGAGAGTGAGTT+GGG | + | chr6_1:88062141-88062160 | Msa0896890:CDS | 40.0% | |
| ! | GGGAAGCCAACTAGTTTATT+TGG | + | chr6_1:88062161-88062180 | Msa0896890:CDS | 40.0% |
| AAACATGTCAATCACTGCAG+TGG | + | chr6_1:88062230-88062249 | Msa0896890:CDS | 40.0% | |
| AAGCTCAAAGAGATGAGTTG+AGG | + | chr6_1:88062310-88062329 | Msa0896890:CDS | 40.0% | |
| GGCTACTAAAGGATACATTG+AGG | + | chr6_1:88062374-88062393 | Msa0896890:CDS | 40.0% | |
| AAGGATACATTGAGGATGAG+TGG | + | chr6_1:88062382-88062401 | Msa0896890:CDS | 40.0% | |
| GCATCTTGCCTGAGAATTTA+AGG | + | chr6_1:88061075-88061094 | Msa0896890:CDS | 40.0% | |
| GAAAATCTAGGTAGGCTTGT+AGG | - | chr6_1:88061418-88061437 | None:intergenic | 40.0% | |
| ATGAAGCATATGTCTCAGCA+TGG | - | chr6_1:88061768-88061787 | None:intergenic | 40.0% | |
| GCTTTCTTGGTTTCTTCACT+CGG | - | chr6_1:88061832-88061851 | None:intergenic | 40.0% | |
| TGAAGAAACCAAGAAAGCCT+TGG | + | chr6_1:88061834-88061853 | Msa0896890:CDS | 40.0% | |
| CAGAATTTCCAAGGCTTTCT+TGG | - | chr6_1:88061845-88061864 | None:intergenic | 40.0% | |
| GATGGCACATTTGTTTAGAG+AGG | - | chr6_1:88061876-88061895 | None:intergenic | 40.0% | |
| ! | CAGATGATGATGTTTCGATG+AGG | + | chr6_1:88061959-88061978 | Msa0896890:CDS | 40.0% |
| TGTGTCAATAGAGAGTGAGT+TGG | + | chr6_1:88062140-88062159 | Msa0896890:CDS | 40.0% | |
| GTGTCAATAGAGAGTGAGTT+GGG | + | chr6_1:88062141-88062160 | Msa0896890:CDS | 40.0% | |
| ! | GGGAAGCCAACTAGTTTATT+TGG | + | chr6_1:88062161-88062180 | Msa0896890:CDS | 40.0% |
| AAACATGTCAATCACTGCAG+TGG | + | chr6_1:88062230-88062249 | Msa0896890:CDS | 40.0% | |
| AAGCTCAAAGAGATGAGTTG+AGG | + | chr6_1:88062310-88062329 | Msa0896890:CDS | 40.0% | |
| GGCTACTAAAGGATACATTG+AGG | + | chr6_1:88062374-88062393 | Msa0896890:CDS | 40.0% | |
| AAGGATACATTGAGGATGAG+TGG | + | chr6_1:88062382-88062401 | Msa0896890:CDS | 40.0% | |
| TCAGGCAGCCTTAAATTCTC+AGG | - | chr6_1:88061086-88061105 | None:intergenic | 45.0% | |
| TTTGCCGAGTCGTCAAGAAT+TGG | + | chr6_1:88061690-88061709 | Msa0896890:CDS | 45.0% | |
| AGCATATGTCTCAGCATGGA+GGG | - | chr6_1:88061764-88061783 | None:intergenic | 45.0% | |
| AAGCATATGTCTCAGCATGG+AGG | - | chr6_1:88061765-88061784 | None:intergenic | 45.0% | |
| GAATCGGCTAAGGCTACTAA+AGG | + | chr6_1:88062363-88062382 | Msa0896890:CDS | 45.0% | |
| TCAGGCAGCCTTAAATTCTC+AGG | - | chr6_1:88061086-88061105 | None:intergenic | 45.0% | |
| TTTGCCGAGTCGTCAAGAAT+TGG | + | chr6_1:88061690-88061709 | Msa0896890:CDS | 45.0% | |
| AGCATATGTCTCAGCATGGA+GGG | - | chr6_1:88061764-88061783 | None:intergenic | 45.0% | |
| AAGCATATGTCTCAGCATGG+AGG | - | chr6_1:88061765-88061784 | None:intergenic | 45.0% | |
| GAATCGGCTAAGGCTACTAA+AGG | + | chr6_1:88062363-88062382 | Msa0896890:CDS | 45.0% | |
| CTCGGCAAAATGTTGTCTGC+AGG | - | chr6_1:88061679-88061698 | None:intergenic | 50.0% | |
| GGCTCCAATTCTTGACGACT+CGG | - | chr6_1:88061697-88061716 | None:intergenic | 50.0% | |
| TGTCAATCACTGCAGTGGCT+AGG | + | chr6_1:88062235-88062254 | Msa0896890:CDS | 50.0% | |
| GTCAATCACTGCAGTGGCTA+GGG | + | chr6_1:88062236-88062255 | Msa0896890:CDS | 50.0% | |
| ! | GAGATGAGTTGAGGAAGCGA+AGG | + | chr6_1:88062319-88062338 | Msa0896890:CDS | 50.0% |
| AGTTGAGGAAGCGAAGGTTG+CGG | + | chr6_1:88062325-88062344 | Msa0896890:CDS | 50.0% | |
| GTTGAGAGCGGAGCAAGAAT+CGG | + | chr6_1:88062347-88062366 | Msa0896890:CDS | 50.0% | |
| CTCGGCAAAATGTTGTCTGC+AGG | - | chr6_1:88061679-88061698 | None:intergenic | 50.0% | |
| GGCTCCAATTCTTGACGACT+CGG | - | chr6_1:88061697-88061716 | None:intergenic | 50.0% | |
| TGTCAATCACTGCAGTGGCT+AGG | + | chr6_1:88062235-88062254 | Msa0896890:CDS | 50.0% | |
| GTCAATCACTGCAGTGGCTA+GGG | + | chr6_1:88062236-88062255 | Msa0896890:CDS | 50.0% | |
| ! | GAGATGAGTTGAGGAAGCGA+AGG | + | chr6_1:88062319-88062338 | Msa0896890:CDS | 50.0% |
| AGTTGAGGAAGCGAAGGTTG+CGG | + | chr6_1:88062325-88062344 | Msa0896890:CDS | 50.0% | |
| GTTGAGAGCGGAGCAAGAAT+CGG | + | chr6_1:88062347-88062366 | Msa0896890:CDS | 50.0% | |
| AGCGGAGCAAGAATCGGCTA+AGG | + | chr6_1:88062353-88062372 | Msa0896890:CDS | 55.0% | |
| AGCGGAGCAAGAATCGGCTA+AGG | + | chr6_1:88062353-88062372 | Msa0896890:CDS | 55.0% | |
| GCGAAGGTTGCGGTTGAGAG+CGG | + | chr6_1:88062335-88062354 | Msa0896890:CDS | 60.0% | |
| GCGAAGGTTGCGGTTGAGAG+CGG | + | chr6_1:88062335-88062354 | Msa0896890:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 88060999 | 88062452 | 88060999 | ID=Msa0896890;Name=Msa0896890 |
| chr6_1 | mRNA | 88060999 | 88062452 | 88060999 | ID=Msa0896890-mRNA-1;Parent=Msa0896890;Name=Msa0896890-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.5|1|1|2|0|369 |
| chr6_1 | exon | 88060999 | 88061338 | 88060999 | ID=Msa0896890-mRNA-1:exon:14843;Parent=Msa0896890-mRNA-1 |
| chr6_1 | exon | 88061683 | 88062452 | 88061683 | ID=Msa0896890-mRNA-1:exon:14844;Parent=Msa0896890-mRNA-1 |
| chr6_1 | CDS | 88060999 | 88061338 | 88060999 | ID=Msa0896890-mRNA-1:cds;Parent=Msa0896890-mRNA-1 |
| chr6_1 | CDS | 88061683 | 88062452 | 88061683 | ID=Msa0896890-mRNA-1:cds;Parent=Msa0896890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
