AlfalfaGEDB | Msa0594560

M. sativa cultivar zhongmu-4 / Msa0594560

KEGG: K18470
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0043087 GO:0044424 GO:0044464 GO:0050790 GO:0051336 GO:0065007 GO:0065009
PFAM: PF00620.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594560	XP_013455198.1	97.619	378	9	0	1	378	1	378	0.0	763

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594560	sp\|Q3E875\|RGAPX_ARATH	70.899	378	108	1	1	378	1	376	0.0	553

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002240	Msa0594560	0.802639	5.098592e-49	-8.615850e-47
Msa0003890	Msa0594560	0.807125	5.890047e-50	-8.615850e-47
Msa0007440	Msa0594560	0.802148	6.435713e-49	-8.615850e-47
Msa0011170	Msa0594560	0.825910	3.622535e-54	-8.615850e-47
Msa0014710	Msa0594560	0.801403	9.155936e-49	-8.615850e-47
Msa0020410	Msa0594560	0.824754	6.799032e-54	-8.615850e-47
Msa0021510	Msa0594560	0.801682	8.025948e-49	-8.615850e-47
Msa0026910	Msa0594560	0.830865	2.308805e-55	-8.615850e-47
Msa0032080	Msa0594560	0.828523	8.576649e-55	-8.615850e-47
Msa0032100	Msa0594560	0.814796	1.283320e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594560	MtrunA17_Chr4g0013351	97.619	378	9	0	1	378	1	378	0.0	763

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594560	AT5G61530.1	70.899	378	108	1	1	378	1	376	0.0	553
Msa0594560	AT5G61530.5	68.783	378	107	2	1	378	1	367	0.0	531
Msa0594560	AT5G61530.2	68.783	378	107	2	1	378	1	367	0.0	531
Msa0594560	AT5G61530.3	70.950	358	102	1	21	378	21	376	0.0	521
Msa0594560	AT5G61530.4	72.924	277	75	0	1	277	1	277	1.30e-148	422

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Find 112 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTACCTGAAACTATA+AGG	0.355497	4_2:+22542240	None:intergenic
AAAGAAGCTAAGGAATCAGC+GGG	0.570777	4_2:-22543265	Msa0594560:CDS
AAAGAGTAATGTAGCTGAAG+TGG	0.566162	4_2:-22543212	Msa0594560:CDS
AAATGGCACCTGTTATCATG+TGG	0.743338	4_2:-22540272	Msa0594560:CDS
AACAAAAGAGAAGGTGGTTG+TGG	0.457511	4_2:-22543056	Msa0594560:CDS
AAGAAGAGTTTAGAGAGATA+TGG	0.324615	4_2:+22544708	None:intergenic
AAGTAACAACAAAATTATAA+CGG	0.546617	4_2:+22544773	None:intergenic
AAGTCGGTGGGCACGTCTTC+AGG	0.278314	4_2:-22543164	Msa0594560:CDS
AATAAGAGAAGATGCATCCA+TGG	0.561442	4_2:+22539176	None:intergenic
AATGATCGTCACGTCCAGAT+TGG	0.476710	4_2:+22538941	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAGTTTAGAGAGATA+TGG	+	chr4_2:22538758-22538777	None:intergenic	30.0%
ATAAGCACTTATCATGCTAA+GGG	-	chr4_2:22539332-22539351	Msa0594560:intron	30.0%
TTACACAGACAGTGTATTAT+TGG	+	chr4_2:22539680-22539699	None:intergenic	30.0%
AAAAAATGGTGGTCTCTTAT+TGG	+	chr4_2:22539722-22539741	None:intergenic	30.0%
CAAAATACCCTTACAAAAGT+TGG	-	chr4_2:22539761-22539780	Msa0594560:intron	30.0%
TAACTACTTCGCTTCTATAT+AGG	-	chr4_2:22539960-22539979	Msa0594560:intron	30.0%
TTACAAAAACAACTTGACGA+CGG	+	chr4_2:22540004-22540023	None:intergenic	30.0%
ATACGGTAGTAATCAAGAAA+AGG	+	chr4_2:22540133-22540152	None:intergenic	30.0%
TCATTATCATTTGTTTCAGG+TGG	-	chr4_2:22540587-22540606	Msa0594560:intron	30.0%
TACTCACTTGTTCAATTATG+TGG	+	chr4_2:22540895-22540914	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	22538672	22544813	22538672	ID=Msa0594560;Name=Msa0594560
chr4_2	mRNA	22538672	22544813	22538672	ID=Msa0594560-mRNA-1;Parent=Msa0594560;Name=Msa0594560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=230\|1\|1\|1\|0.88\|0.8\|10\|393\|378
chr4_2	exon	22538672	22539210	22538672	ID=Msa0594560-mRNA-1:exon:6127;Parent=Msa0594560-mRNA-1
chr4_2	exon	22540157	22540319	22540157	ID=Msa0594560-mRNA-1:exon:6126;Parent=Msa0594560-mRNA-1
chr4_2	exon	22541726	22541970	22541726	ID=Msa0594560-mRNA-1:exon:6125;Parent=Msa0594560-mRNA-1
chr4_2	exon	22542058	22542135	22542058	ID=Msa0594560-mRNA-1:exon:6124;Parent=Msa0594560-mRNA-1
chr4_2	exon	22542249	22542347	22542249	ID=Msa0594560-mRNA-1:exon:6123;Parent=Msa0594560-mRNA-1
chr4_2	exon	22542608	22542626	22542608	ID=Msa0594560-mRNA-1:exon:6122;Parent=Msa0594560-mRNA-1
chr4_2	exon	22542817	22542879	22542817	ID=Msa0594560-mRNA-1:exon:6121;Parent=Msa0594560-mRNA-1
chr4_2	exon	22543036	22543298	22543036	ID=Msa0594560-mRNA-1:exon:6120;Parent=Msa0594560-mRNA-1
chr4_2	exon	22543386	22543503	22543386	ID=Msa0594560-mRNA-1:exon:6119;Parent=Msa0594560-mRNA-1
chr4_2	exon	22544641	22544813	22544641	ID=Msa0594560-mRNA-1:exon:6118;Parent=Msa0594560-mRNA-1
chr4_2	five_prime_UTR	22544641	22544813	22544641	ID=Msa0594560-mRNA-1:five_prime_utr;Parent=Msa0594560-mRNA-1
chr4_2	five_prime_UTR	22543447	22543503	22543447	ID=Msa0594560-mRNA-1:five_prime_utr;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22543386	22543446	22543386	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22543036	22543298	22543036	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22542817	22542879	22542817	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22542608	22542626	22542608	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22542249	22542347	22542249	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22542058	22542135	22542058	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22541726	22541970	22541726	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22540157	22540319	22540157	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	CDS	22539065	22539210	22539065	ID=Msa0594560-mRNA-1:cds;Parent=Msa0594560-mRNA-1
chr4_2	three_prime_UTR	22538672	22539064	22538672	ID=Msa0594560-mRNA-1:three_prime_utr;Parent=Msa0594560-mRNA-1

Gene Sequence

>Msa0594560

ATGCCTTCTGTAACCTCACCTCAGTGGCAAGATAAGGCGAGTGGTTTCTTTTCTTCCTCAGGGGTCAAGCTTAAAGAAGCTAAGGAATCAGCGGGAACGTTTGTTGGCGAGGTCACAAAGGATACAAAGAGTAATGTAGCTGAAGTGGCGGGAAAAGTTGGGACGGTATTCAAAAGTCGGTGGGCACGTCTTCAGGAGCCGTCTACAAGACATGCTGTACAGGATCGAATGATATCGGCTGCTGCTACGACTGGTGCATTCCTGAGGAGAGGTTTGTCAGGAACAAAAGAGAAGGTGGTTGTGGGGAAATCCAAGGTTGAAGAGGTGGCAAAAATAACGGCGCAAAAAAGTAAGACTATCTTGACAGACATTGAAAGATGGCAAAAGGGAGTTGCTAAAACTGACGTATTTGGAGTTCCGATTGAGATTACTGTACAGAGGCAAGATTGCAGCAAGCCTATTCCTCAGATACTAGTCAATTGTGCAGATTACCTTATAGTTTCAGGATTGAATCTGCCATATCTTTTTAAATCTGAAGGGGACAAAAAGGTTATTCAGCAGTTGGTTTCCCTATACAACCAAGATTCAACTGCTGCAGTGCCTGAAGGCTCAAATCCAGTTGATGTAGCAGCTCTTGTTAAATACTATCTTGCTAGCCTTCCCGAGCCACTGACCACATTGGAGCTTTATCATGAGATCAAAGGTGCTCGAACCAACATATATTCCATGAGAAACATACTTAAGAGGCTTTCTAGTGTGAACTATATGACTCTGGAGTTTATAACCGCACTTTTGCTCCGTGCTAGTCAGAAGTCACTTCTCAATAAGATGGACTCTCGGAGCCTTGCAATGGAAATGGCACCTGTTATCATGTGGCAAAAGGGATGTAGACCTGAAATTTATCGTCAATACTGGAGTCAAATGTCAGAAAGTCCTTCCAAACAGAGATTGAATCCAGAAGCTGGTTCAACTAATTGGGACATGCTTGCTGACGAGAGTGAAGCCATGGATGCATCTTCTCTTATTCCTTTGGATGAAGGCATGCCAGTTGACTTCGGTGCAATCGAAGTTGTTCAGTTGCTCATAGAACATCATAATGCAGTCTTCACAGATGCCAACGAGACAGTTTGGAAATGA

Protein sequence

>Msa0594560

MPSVTSPQWQDKASGFFSSSGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGKVGTVFKSRWARLQEPSTRHAVQDRMISAAATTGAFLRRGLSGTKEKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGVAKTDVFGVPIEITVQRQDCSKPIPQILVNCADYLIVSGLNLPYLFKSEGDKKVIQQLVSLYNQDSTAAVPEGSNPVDVAALVKYYLASLPEPLTTLELYHEIKGARTNIYSMRNILKRLSSVNYMTLEFITALLLRASQKSLLNKMDSRSLAMEMAPVIMWQKGCRPEIYRQYWSQMSESPSKQRLNPEAGSTNWDMLADESEAMDASSLIPLDEGMPVDFGAIEVVQLLIEHHNAVFTDANETVWK*