AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0903370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903370 MtrunA17_Chr6g0451511 81.597 576 72 3 1 547 7 577 0.0 904
Msa0903370 MtrunA17_Chr6g0451531 55.043 585 207 14 1 546 9 576 0.0 582
Msa0903370 MtrunA17_Chr3g0107671 52.151 581 230 9 1 546 7 574 0.0 567
Msa0903370 MtrunA17_Chr6g0451541 52.241 580 225 11 1 542 9 574 0.0 562
Msa0903370 MtrunA17_Chr6g0451561 52.470 587 219 14 1 546 7 574 0.0 543
Msa0903370 MtrunA17_Chr3g0107661 53.403 191 80 3 1 185 7 194 1.63e-51 177
Msa0903370 MtrunA17_Chr3g0107651 56.250 112 49 0 269 380 25 136 5.24e-35 128
Msa0903370 MtrunA17_Chr3g0118251 22.047 508 269 14 111 510 111 599 6.41e-24 105
Msa0903370 MtrunA17_Chr8g0384621 24.927 341 226 9 204 517 274 611 5.34e-23 103
Msa0903370 MtrunA17_Chr8g0384621 45.652 92 44 3 116 202 125 215 1.50e-12 70.5
Msa0903370 MtrunA17_Chr3g0118541 26.736 288 161 12 202 455 287 558 5.11e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903370 AT5G14930.2 36.991 565 280 20 4 535 9 530 7.81e-101 315
Msa0903370 AT3G52430.1 27.465 426 261 10 123 517 112 520 1.58e-36 143
Msa0903370 AT5G14930.3 34.263 251 121 8 4 230 9 239 5.65e-32 124

Find 89 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTCTAGATTCTTGCTTT+TGG 0.226739 6_2:+461408 Msa0903370:CDS
CCATGAAGAACTATTTGATA+TGG 0.263918 6_2:-460106 None:intergenic
GAGGCTTCATCAATGATTCT+TGG 0.273548 6_2:-461148 None:intergenic
GAGTCAATATAAGAAAATTA+AGG 0.303089 6_2:+461610 Msa0903370:CDS
CCGGTCTTCTTCGAAAATTA+TGG 0.305259 6_2:+459244 Msa0903370:CDS
GCAACATTTGTGACAAGTTC+CGG 0.320944 6_2:+459225 Msa0903370:CDS
TTCACTTTATTACTATTAGA+TGG 0.321607 6_2:+460006 Msa0903370:CDS
CAAACACTTGACTTCGATCC+TGG 0.327055 6_2:-460299 None:intergenic
GTGTTTGGTTCTATAGAGTA+TGG 0.329217 6_2:+460315 Msa0903370:CDS
GGATGAGGCAACAAGAAAAT+TGG 0.331734 6_2:+461496 Msa0903370:CDS
AAACCTCTTTGCATCACCTT+TGG 0.355006 6_2:+460048 Msa0903370:CDS
TGTCAATCTTCAATATGAAT+TGG 0.365538 6_2:+459386 Msa0903370:CDS
CCATATCAAATAGTTCTTCA+TGG 0.366653 6_2:+460106 Msa0903370:CDS
TCCAGTGATTATCAGCTTAG+AGG 0.371768 6_2:-459953 None:intergenic
AAGATTGAATATTGTAAGAA+TGG 0.372020 6_2:+461827 Msa0903370:three_prime_UTR
TTGCAAGGACACCGCAAATC+AGG 0.381433 6_2:+460371 Msa0903370:CDS
GTTTCAAATGTTGTTGGTAA+TGG 0.385871 6_2:+459288 Msa0903370:CDS
TGAAGATTGACAGAATTTGA+TGG 0.388886 6_2:-459375 None:intergenic
TTCGGAACTTACTAACATCT+TGG 0.398246 6_2:-461094 None:intergenic
GAAGCAGCAGCAACAACAAC+TGG 0.402120 6_2:+461350 Msa0903370:CDS
AGAACTGCTAAAACAGAATC+AGG 0.410566 6_2:-460264 None:intergenic
AGTTACAATATTTCCACATA+AGG 0.422650 6_2:-461783 None:intergenic
ATAATCACTGGACTTGCTCT+TGG 0.433666 6_2:+459964 Msa0903370:CDS
TAGATTTAGCAGTGGAATAG+AGG 0.436219 6_2:+459200 None:intergenic
ATCTAGTCACTACAAACAAT+TGG 0.438035 6_2:+461313 Msa0903370:CDS
ACCTTTGGTTCTCCACTAGT+TGG 0.448784 6_2:+460063 Msa0903370:CDS
AATTATAATGTGGAATATGT+TGG 0.449521 6_2:+461680 Msa0903370:CDS
AGTCAATATAAGAAAATTAA+GGG 0.452975 6_2:+461611 Msa0903370:CDS
CACAAACTATTGGAAAGAAA+TGG 0.453048 6_2:+461124 Msa0903370:CDS
GAAACTTCTATCACCTTATG+TGG 0.454329 6_2:+461770 Msa0903370:three_prime_UTR
ATTGACAGAATTTGATGGTA+TGG 0.456226 6_2:-459370 None:intergenic
GAATTTGAGAATTATGTGTA+TGG 0.458115 6_2:+461521 Msa0903370:CDS
AGTTCTTGAGACGTCAATCC+AGG 0.459017 6_2:+460281 Msa0903370:CDS
CAGGATCGAAGTCAAGTGTT+TGG 0.471867 6_2:+460300 Msa0903370:CDS
GAAAACAATTATAGAGAAAG+TGG 0.473349 6_2:-461853 None:intergenic
CCTTGGTGAAAGTAGCTACA+TGG 0.476739 6_2:+461580 Msa0903370:CDS
AACATTGTTTCAAATGTTGT+TGG 0.478673 6_2:+459282 Msa0903370:CDS
TCTACGGCGGAACAACTTAT+CGG 0.482472 6_2:+461204 Msa0903370:CDS
TAATAATGAGCAATGTCTAA+TGG 0.485989 6_2:-461239 None:intergenic
AAATGTTACTAAAGATAAAG+TGG 0.486163 6_2:+461376 Msa0903370:CDS
GTGATGAACTTCCTGGGAAG+TGG 0.492900 6_2:-460165 None:intergenic
GTCAATATAAGAAAATTAAG+GGG 0.494372 6_2:+461612 Msa0903370:CDS
CTCAATGAATACCATGTCAA+TGG 0.497345 6_2:+461263 Msa0903370:CDS
ATCACTGGACTTGCTCTTGG+AGG 0.501122 6_2:+459967 Msa0903370:CDS
ACTACAAACAATTGGAGGAT+TGG 0.502313 6_2:+461321 Msa0903370:CDS
CCTTGCAAATTGCTTTGCAA+TGG 0.507166 6_2:-460356 None:intergenic
AAAATCTAGTGACATTGAAA+AGG 0.507800 6_2:+461475 Msa0903370:CDS
CTTCGTACTCGTTGGCTCTA+CGG 0.512139 6_2:+461188 Msa0903370:CDS
ACTAGTTCTTATGTGCCCTT+CGG 0.528063 6_2:+460195 Msa0903370:CDS
CTTGCAATGATCCACTTCCC+AGG 0.534110 6_2:+460154 Msa0903370:CDS
TCCTCTAAGCTGATAATCAC+TGG 0.534233 6_2:+459952 Msa0903370:CDS
TAGACATGGCTCTACTTGAA+TGG 0.536032 6_2:+461000 Msa0903370:CDS
CTTTCACCAAGGAAAATCTC+TGG 0.540545 6_2:-461569 None:intergenic
AAGAATTATCACTATCCTTG+TGG 0.541843 6_2:+461724 Msa0903370:exon
TTGATGAAGCCTCAGAAAGA+AGG 0.542621 6_2:+461158 Msa0903370:CDS
AGCGACGCTCCTTCTTTCTG+AGG 0.544608 6_2:-461167 None:intergenic
TTTCTTTCCAATAGTTTGTG+AGG 0.545370 6_2:-461121 None:intergenic
GGTTTCATCTACTGAACTCA+AGG 0.548055 6_2:+459407 Msa0903370:CDS
CGGAACAACTTATCGGAGAA+TGG 0.549150 6_2:+461211 Msa0903370:CDS
TATAATGTGGAATATGTTGG+AGG 0.558258 6_2:+461683 Msa0903370:CDS
TAGTCACTACAAACAATTGG+AGG 0.569273 6_2:+461316 Msa0903370:CDS
CATGCCTTGAACCTGATTTG+CGG 0.572134 6_2:-460382 None:intergenic
TAGTGACATTGAAAAGGATG+AGG 0.574070 6_2:+461481 Msa0903370:CDS
TCTCCACTAGTTGGTGACAA+AGG 0.579237 6_2:+460072 Msa0903370:CDS
GAGCGTCGCTTCGTACTCGT+TGG 0.580717 6_2:+461180 Msa0903370:CDS
TGGTAATGGACTATCATGGA+AGG 0.600418 6_2:+459302 Msa0903370:CDS
TCCTTTGTGAAAATCATCAG+AGG 0.604150 6_2:+459508 Msa0903370:CDS
CAATGCTCATAATTATAATG+TGG 0.604459 6_2:+461670 Msa0903370:CDS
ACCAACTAGTGGAGAACCAA+AGG 0.608258 6_2:-460064 None:intergenic
AGTCTTTACCACCATTGACA+TGG 0.609609 6_2:-461274 None:intergenic
TCTACTTGAATGGTACAAGA+AGG 0.611495 6_2:+461010 Msa0903370:CDS
AATCCTTTGTCACCAACTAG+TGG 0.611681 6_2:-460075 None:intergenic
AATGAATACCATGTCAATGG+TGG 0.624112 6_2:+461266 Msa0903370:CDS
CCATTGCAAAGCAATTTGCA+AGG 0.624372 6_2:+460356 Msa0903370:CDS
TTATGTGTATGGATTGCTCA+AGG 0.625770 6_2:+461532 Msa0903370:CDS
TGTTGTTATAGATTTAGCAG+TGG 0.627560 6_2:+459192 None:intergenic
CACACGAGATATGTTCCGAA+GGG 0.637916 6_2:-460210 None:intergenic
GAACCAAAGGTGATGCAAAG+AGG 0.640380 6_2:-460051 None:intergenic
ACACACGAGATATGTTCCGA+AGG 0.646058 6_2:-460211 None:intergenic
TTGTTGGTAATGGACTATCA+TGG 0.647617 6_2:+459298 Msa0903370:CDS
ATATCAGTGTCATGTTGTTG+CGG 0.654632 6_2:-460879 None:intergenic
GCTTGATCAATTGAAATCTG+AGG 0.655762 6_2:+459530 Msa0903370:CDS
TCAATATAAGAAAATTAAGG+GGG 0.670997 6_2:+461613 Msa0903370:CDS
CGTACTCGTTGGCTCTACGG+CGG 0.687866 6_2:+461191 Msa0903370:CDS
AAAGTAGCTACATGGCATGG+TGG 0.693626 6_2:+461588 Msa0903370:CDS
CCATGTAGCTACTTTCACCA+AGG 0.700600 6_2:-461580 None:intergenic
GTGAAAGTAGCTACATGGCA+TGG 0.700779 6_2:+461585 Msa0903370:CDS
GAATTCAATGAAGATAGACA+TGG 0.703021 6_2:+460986 Msa0903370:CDS
TTATACATAGCTAAACCACA+AGG 0.765872 6_2:-461739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATGTTTGATCAAATTA+AGG - chr6_2:459908-459927 None:intergenic 15.0%
!!! CATTACTTTAGAAAAAAATT+TGG + chr6_2:460902-460921 Msa0903370:CDS 15.0%
!!! AAAAATGAATTTTTTCTCTA+GGG - chr6_2:460931-460950 None:intergenic 15.0%
!!! AAAAATTCATTTTTCAGAAA+AGG + chr6_2:460937-460956 Msa0903370:CDS 15.0%
!!! AAAATTCATTTTTCAGAAAA+GGG + chr6_2:460938-460957 Msa0903370:CDS 15.0%
!! AGTCAATATAAGAAAATTAA+GGG + chr6_2:461611-461630 Msa0903370:CDS 15.0%
!! TTAATGTTAAGATGAAAAAG+CGG - chr6_2:459477-459496 None:intergenic 20.0%
!! TAAGAGTAAATAAGCTATAA+GGG - chr6_2:459624-459643 None:intergenic 20.0%
!! TTCACTTTATTACTATTAGA+TGG + chr6_2:460006-460025 Msa0903370:CDS 20.0%
!!! CTTAGCAATGTTTTAAATTA+TGG + chr6_2:460491-460510 Msa0903370:intron 20.0%
!!! AATTAAAGAACTATTTTCTC+CGG - chr6_2:460753-460772 None:intergenic 20.0%
!! AAAAATACTGTTTAATCACT+AGG - chr6_2:460812-460831 None:intergenic 20.0%
!!! GAAAAATGAATTTTTTCTCT+AGG - chr6_2:460932-460951 None:intergenic 20.0%
!!! CTTCATTGAATTCAATTTTT+TGG - chr6_2:460979-460998 None:intergenic 20.0%
!! ATTCAAAAAACAGAAACATA+GGG + chr6_2:461033-461052 Msa0903370:CDS 20.0%
!! AAATGTTACTAAAGATAAAG+TGG + chr6_2:461376-461395 Msa0903370:CDS 20.0%
!! GAGTCAATATAAGAAAATTA+AGG + chr6_2:461610-461629 Msa0903370:CDS 20.0%
!! GTCAATATAAGAAAATTAAG+GGG + chr6_2:461612-461631 Msa0903370:CDS 20.0%
!! TCAATATAAGAAAATTAAGG+GGG + chr6_2:461613-461632 Msa0903370:CDS 20.0%
!! AATTATAATGTGGAATATGT+TGG + chr6_2:461680-461699 Msa0903370:CDS 20.0%
!! AAGATTGAATATTGTAAGAA+TGG + chr6_2:461827-461846 Msa0903370:three_prime_UTR 20.0%
! AACATTGTTTCAAATGTTGT+TGG + chr6_2:459282-459301 Msa0903370:CDS 25.0%
! TGTCAATCTTCAATATGAAT+TGG + chr6_2:459386-459405 Msa0903370:CDS 25.0%
! TACTCAAAAACTGAAAATGA+AGG - chr6_2:459443-459462 None:intergenic 25.0%
! AAAGAGTTAGAATAATGACA+AGG - chr6_2:459566-459585 None:intergenic 25.0%
!!! CTATGTTATCACTTTTTCAT+AGG - chr6_2:459598-459617 None:intergenic 25.0%
! ATGAAAAAGTGATAACATAG+TGG + chr6_2:459598-459617 Msa0903370:intron 25.0%
! CTAAGAGTAAATAAGCTATA+AGG - chr6_2:459625-459644 None:intergenic 25.0%
!!! ATGTTTTTTATGTCTCAATG+TGG - chr6_2:460584-460603 None:intergenic 25.0%
!! TAAAAAAAGTACATGTAGTC+TGG + chr6_2:460680-460699 Msa0903370:intron 25.0%
!! ATATACGCAAAAAAAGTACA+TGG - chr6_2:460724-460743 None:intergenic 25.0%
! GATTCAAAAAACAGAAACAT+AGG + chr6_2:461032-461051 Msa0903370:CDS 25.0%
! TAATAATGAGCAATGTCTAA+TGG - chr6_2:461242-461261 None:intergenic 25.0%
! AAAATCTAGTGACATTGAAA+AGG + chr6_2:461475-461494 Msa0903370:CDS 25.0%
! GAATTTGAGAATTATGTGTA+TGG + chr6_2:461521-461540 Msa0903370:CDS 25.0%
! CAATGCTCATAATTATAATG+TGG + chr6_2:461670-461689 Msa0903370:CDS 25.0%
! AGTTACAATATTTCCACATA+AGG - chr6_2:461786-461805 None:intergenic 25.0%
! GAAAACAATTATAGAGAAAG+TGG - chr6_2:461856-461875 None:intergenic 25.0%
! GTTTCAAATGTTGTTGGTAA+TGG + chr6_2:459288-459307 Msa0903370:CDS 30.0%
! ATTGACAGAATTTGATGGTA+TGG - chr6_2:459373-459392 None:intergenic 30.0%
TGAAGATTGACAGAATTTGA+TGG - chr6_2:459378-459397 None:intergenic 30.0%
TGTTTCAATAAGCTAGTGAA+TGG - chr6_2:459785-459804 None:intergenic 30.0%
CATAATAACAATCCTAATGC+AGG + chr6_2:459921-459940 Msa0903370:intron 30.0%
CCATGAAGAACTATTTGATA+TGG - chr6_2:460109-460128 None:intergenic 30.0%
CCATATCAAATAGTTCTTCA+TGG + chr6_2:460106-460125 Msa0903370:CDS 30.0%
GTATTATTCTGATTCACTAC+AGG + chr6_2:460404-460423 Msa0903370:intron 30.0%
! TTTTTGCGTATATTTGAGTC+CGG + chr6_2:460731-460750 Msa0903370:intron 30.0%
ACTAGGAAATAACTCTAACA+AGG - chr6_2:460795-460814 None:intergenic 30.0%
GAATTCAATGAAGATAGACA+TGG + chr6_2:460986-461005 Msa0903370:CDS 30.0%
!! AATAGTTTGTGAGGCTTTTT+CGG - chr6_2:461115-461134 None:intergenic 30.0%
! TTTCTTTCCAATAGTTTGTG+AGG - chr6_2:461124-461143 None:intergenic 30.0%
CACAAACTATTGGAAAGAAA+TGG + chr6_2:461124-461143 Msa0903370:CDS 30.0%
ATCTAGTCACTACAAACAAT+TGG + chr6_2:461313-461332 Msa0903370:CDS 30.0%
! TAACTCTAGATTCTTGCTTT+TGG + chr6_2:461408-461427 Msa0903370:CDS 30.0%
!! AACTCTAGATTCTTGCTTTT+GGG + chr6_2:461409-461428 Msa0903370:CDS 30.0%
TATAATGTGGAATATGTTGG+AGG + chr6_2:461683-461702 Msa0903370:CDS 30.0%
AAGAATTATCACTATCCTTG+TGG + chr6_2:461724-461743 Msa0903370:exon 30.0%
TTATACATAGCTAAACCACA+AGG - chr6_2:461742-461761 None:intergenic 30.0%
! CCATAATTTTCGAAGAAGAC+CGG - chr6_2:459247-459266 None:intergenic 35.0%
!! TTGTTGGTAATGGACTATCA+TGG + chr6_2:459298-459317 Msa0903370:CDS 35.0%
TCCTTTGTGAAAATCATCAG+AGG + chr6_2:459508-459527 Msa0903370:CDS 35.0%
GCTTGATCAATTGAAATCTG+AGG + chr6_2:459530-459549 Msa0903370:CDS 35.0%
TGTAAGAGTTTACTGTCAGA+AGG + chr6_2:459664-459683 Msa0903370:intron 35.0%
AATCACGCGGAAACAATATT+TGG - chr6_2:459704-459723 None:intergenic 35.0%
CCAGTTAAGGACAAATTGTT+CGG - chr6_2:459742-459761 None:intergenic 35.0%
TGGTTAAAGAGTTCCAGTTA+AGG - chr6_2:459755-459774 None:intergenic 35.0%
! TGTTTTGTGATGAACTTCCT+GGG - chr6_2:460174-460193 None:intergenic 35.0%
! ATGTTTTGTGATGAACTTCC+TGG - chr6_2:460175-460194 None:intergenic 35.0%
AGAACTGCTAAAACAGAATC+AGG - chr6_2:460267-460286 None:intergenic 35.0%
!! GTGTTTGGTTCTATAGAGTA+TGG + chr6_2:460315-460334 Msa0903370:CDS 35.0%
TATTAAGCTACCTGCATATG+TGG - chr6_2:460468-460487 None:intergenic 35.0%
AGAGACGTGATTTGAAGAAA+AGG - chr6_2:460636-460655 None:intergenic 35.0%
ATATCAGTGTCATGTTGTTG+CGG - chr6_2:460882-460901 None:intergenic 35.0%
TCTACTTGAATGGTACAAGA+AGG + chr6_2:461010-461029 Msa0903370:CDS 35.0%
TTCGGAACTTACTAACATCT+TGG - chr6_2:461097-461116 None:intergenic 35.0%
GAAAAAGCCTCACAAACTAT+TGG + chr6_2:461114-461133 Msa0903370:CDS 35.0%
CTCAATGAATACCATGTCAA+TGG + chr6_2:461263-461282 Msa0903370:CDS 35.0%
AATGAATACCATGTCAATGG+TGG + chr6_2:461266-461285 Msa0903370:CDS 35.0%
TAGTCACTACAAACAATTGG+AGG + chr6_2:461316-461335 Msa0903370:CDS 35.0%
ACTACAAACAATTGGAGGAT+TGG + chr6_2:461321-461340 Msa0903370:CDS 35.0%
TAGTGACATTGAAAAGGATG+AGG + chr6_2:461481-461500 Msa0903370:CDS 35.0%
! TTATGTGTATGGATTGCTCA+AGG + chr6_2:461532-461551 Msa0903370:CDS 35.0%
GAAACTTCTATCACCTTATG+TGG + chr6_2:461770-461789 Msa0903370:three_prime_UTR 35.0%
GCAACATTTGTGACAAGTTC+CGG + chr6_2:459225-459244 Msa0903370:CDS 40.0%
CCGGTCTTCTTCGAAAATTA+TGG + chr6_2:459244-459263 Msa0903370:CDS 40.0%
!! TGGTAATGGACTATCATGGA+AGG + chr6_2:459302-459321 Msa0903370:CDS 40.0%
GGTTTCATCTACTGAACTCA+AGG + chr6_2:459407-459426 Msa0903370:CDS 40.0%
! GCCTCTGATGATTTTCACAA+AGG - chr6_2:459512-459531 None:intergenic 40.0%
CCGAACAATTTGTCCTTAAC+TGG + chr6_2:459739-459758 Msa0903370:intron 40.0%
TCCTCTAAGCTGATAATCAC+TGG + chr6_2:459952-459971 Msa0903370:CDS 40.0%
TCCAGTGATTATCAGCTTAG+AGG - chr6_2:459956-459975 None:intergenic 40.0%
! ATAATCACTGGACTTGCTCT+TGG + chr6_2:459964-459983 Msa0903370:CDS 40.0%
AAACCTCTTTGCATCACCTT+TGG + chr6_2:460048-460067 Msa0903370:CDS 40.0%
AATCCTTTGTCACCAACTAG+TGG - chr6_2:460078-460097 None:intergenic 40.0%
! ACTAGTTCTTATGTGCCCTT+CGG + chr6_2:460195-460214 Msa0903370:CDS 40.0%
CCTTGCAAATTGCTTTGCAA+TGG - chr6_2:460359-460378 None:intergenic 40.0%
CCATTGCAAAGCAATTTGCA+AGG + chr6_2:460356-460375 Msa0903370:CDS 40.0%
GATTCACTACAGGCATGTAT+TGG + chr6_2:460414-460433 Msa0903370:intron 40.0%
AATCACGTCTCTTACTACTC+TGG + chr6_2:460644-460663 Msa0903370:intron 40.0%
! TAGACATGGCTCTACTTGAA+TGG + chr6_2:461000-461019 Msa0903370:CDS 40.0%
GAGGCTTCATCAATGATTCT+TGG - chr6_2:461151-461170 None:intergenic 40.0%
TTGATGAAGCCTCAGAAAGA+AGG + chr6_2:461158-461177 Msa0903370:CDS 40.0%
AGTCTTTACCACCATTGACA+TGG - chr6_2:461277-461296 None:intergenic 40.0%
GGATGAGGCAACAAGAAAAT+TGG + chr6_2:461496-461515 Msa0903370:CDS 40.0%
CTTTCACCAAGGAAAATCTC+TGG - chr6_2:461572-461591 None:intergenic 40.0%
! TTCCGCGTGATTTGTGTTTG+AGG + chr6_2:459712-459731 Msa0903370:intron 45.0%
GACCTCAAACACAAATCACG+CGG - chr6_2:459717-459736 None:intergenic 45.0%
AGGAGCTACTAACCTGCATT+AGG - chr6_2:459936-459955 None:intergenic 45.0%
GAACCAAAGGTGATGCAAAG+AGG - chr6_2:460054-460073 None:intergenic 45.0%
!! ACCTTTGGTTCTCCACTAGT+TGG + chr6_2:460063-460082 Msa0903370:CDS 45.0%
ACCAACTAGTGGAGAACCAA+AGG - chr6_2:460067-460086 None:intergenic 45.0%
!! TCTCCACTAGTTGGTGACAA+AGG + chr6_2:460072-460091 Msa0903370:CDS 45.0%
CACACGAGATATGTTCCGAA+GGG - chr6_2:460213-460232 None:intergenic 45.0%
ACACACGAGATATGTTCCGA+AGG - chr6_2:460214-460233 None:intergenic 45.0%
AGTTCTTGAGACGTCAATCC+AGG + chr6_2:460281-460300 Msa0903370:CDS 45.0%
CAAACACTTGACTTCGATCC+TGG - chr6_2:460302-460321 None:intergenic 45.0%
CAGGATCGAAGTCAAGTGTT+TGG + chr6_2:460300-460319 Msa0903370:CDS 45.0%
! CATGCCTTGAACCTGATTTG+CGG - chr6_2:460385-460404 None:intergenic 45.0%
AGGATTGTCACCACATATGC+AGG + chr6_2:460455-460474 Msa0903370:intron 45.0%
CATGTAGTCTGGTCCAAATG+CGG + chr6_2:460691-460710 Msa0903370:intron 45.0%
ACATGGATCTAGTCCGCATT+TGG - chr6_2:460707-460726 None:intergenic 45.0%
TCTACGGCGGAACAACTTAT+CGG + chr6_2:461204-461223 Msa0903370:CDS 45.0%
CGGAACAACTTATCGGAGAA+TGG + chr6_2:461211-461230 Msa0903370:CDS 45.0%
! CTTTTGGGCACATGTTGAAG+AGG + chr6_2:461424-461443 Msa0903370:CDS 45.0%
! GTGTCACCAGAGATTTTCCT+TGG + chr6_2:461563-461582 Msa0903370:CDS 45.0%
! CCATGTAGCTACTTTCACCA+AGG - chr6_2:461583-461602 None:intergenic 45.0%
CCTTGGTGAAAGTAGCTACA+TGG + chr6_2:461580-461599 Msa0903370:CDS 45.0%
GTGAAAGTAGCTACATGGCA+TGG + chr6_2:461585-461604 Msa0903370:CDS 45.0%
AAAGTAGCTACATGGCATGG+TGG + chr6_2:461588-461607 Msa0903370:CDS 45.0%
! AGCTAGTGAATGGACTCGAG+TGG - chr6_2:459775-459794 None:intergenic 50.0%
! ATCACTGGACTTGCTCTTGG+AGG + chr6_2:459967-459986 Msa0903370:CDS 50.0%
CTTGCAATGATCCACTTCCC+AGG + chr6_2:460154-460173 Msa0903370:CDS 50.0%
GTGATGAACTTCCTGGGAAG+TGG - chr6_2:460168-460187 None:intergenic 50.0%
TTGCAAGGACACCGCAAATC+AGG + chr6_2:460371-460390 Msa0903370:CDS 50.0%
GACACCGCAAATCAGGTTCA+AGG + chr6_2:460378-460397 Msa0903370:intron 50.0%
TATCATGACCTAGATCGCGC+TGG + chr6_2:460606-460625 Msa0903370:intron 50.0%
!! CTTCGTACTCGTTGGCTCTA+CGG + chr6_2:461188-461207 Msa0903370:CDS 50.0%
GAAGCAGCAGCAACAACAAC+TGG + chr6_2:461350-461369 Msa0903370:CDS 50.0%
GGCTTGCAATTGTTCGCGCT+AGG + chr6_2:460435-460454 Msa0903370:intron 55.0%
AAGGTCAACCAGCGCGATCT+AGG - chr6_2:460617-460636 None:intergenic 55.0%
AGCGACGCTCCTTCTTTCTG+AGG - chr6_2:461170-461189 None:intergenic 55.0%
! GAGCGTCGCTTCGTACTCGT+TGG + chr6_2:461180-461199 Msa0903370:CDS 60.0%
!! CGTACTCGTTGGCTCTACGG+CGG + chr6_2:461191-461210 Msa0903370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 459204 461886 459204 ID=Msa0903370;Name=Msa0903370
chr6_2 mRNA 459204 461886 459204 ID=Msa0903370-mRNA-1;Parent=Msa0903370;Name=Msa0903370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|162|547
chr6_2 exon 459204 459551 459204 ID=Msa0903370-mRNA-1:exon:209;Parent=Msa0903370-mRNA-1
chr6_2 exon 459943 460392 459943 ID=Msa0903370-mRNA-1:exon:210;Parent=Msa0903370-mRNA-1
chr6_2 exon 460879 461886 460879 ID=Msa0903370-mRNA-1:exon:211;Parent=Msa0903370-mRNA-1
chr6_2 CDS 459204 459551 459204 ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1
chr6_2 CDS 459943 460392 459943 ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1
chr6_2 CDS 460879 461724 460879 ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1
chr6_2 three_prime_UTR 461725 461886 461725 ID=Msa0903370-mRNA-1:three_prime_utr;Parent=Msa0903370-mRNA-1
Gene Sequence

>Msa0903370

TTTAGCAGTGGAATAGAGGTTGCAACATTTGTGACAAGTTCCGGTCTTCTTCGAAAATTATGGAATGTGAGTGATGCAAACATTGTTTCAAATGTTGTTGGTAATGGACTATCATGGAAGGTTTATAAAGAACAAGATACTGATGTAACAATTGTAGCATTTGAGACCATACCATCAAATTCTGTCAATCTTCAATATGAATTGGTTTCATCTACTGAACTCAAGGAGAAGAATTTCCTTCATTTTCAGTTTTTGAGTACTAAAGCAAATCCGCTTTTTCATCTTAACATTAATGCAGTTTCACTCCTTTGTGAAAATCATCAGAGGCTTGATCAATTGAAATCTGAGGTTAGTAGCTCCTCTAAGCTGATAATCACTGGACTTGCTCTTGGAGGATCAATTGCTTCACTCTTCACTTTATTACTATTAGATGGCTTTGACTCGAGAAAGAAAAAACCTCTTTGCATCACCTTTGGTTCTCCACTAGTTGGTGACAAAGGATTGCAAAAATCCATATCAAATAGTTCTTCATGGAATTCTTGTTTTCTTCATGTTGTTTCTTGCAATGATCCACTTCCCAGGAAGTTCATCACAAAACATACTAGTTCTTATGTGCCCTTCGGAACATATCTCGTGTGTTATGATACATACTCTACTTGTTTTGAGAATCCTGATTCTGTTTTAGCAGTTCTTGAGACGTCAATCCAGGATCGAAGTCAAGTGTTTGGTTCTATAGAGTATGGAAATATTGTTGAAAAACTCCATTGCAAAGCAATTTGCAAGGACACCGCAAATCAGCCGCAACAACATGACACTGATATCATTACTTTAGAAAAAAATTTGGAGTCCCTAGAGAAAAAATTCATTTTTCAGAAAAGGGAAAAAGTTGATCAATCCAAAAAATTGAATTCAATGAAGATAGACATGGCTCTACTTGAATGGTACAAGAAGGATTCAAAAAACAGAAACATAGGGTACTATGATAGCTATAAGAAAATGTACTCATCAAGTGACCAAGATGTTAGTAAGTTCCGAAAAAGCCTCACAAACTATTGGAAAGAAATGGTCCAAGAATCATTGATGAAGCCTCAGAAAGAAGGAGCGTCGCTTCGTACTCGTTGGCTCTACGGCGGAACAACTTATCGGAGAATGGTTGAACCATTAGACATTGCTCATTATTATCTCAATGAATACCATGTCAATGGTGGTAAAGACTATGTGACAACAGCAAGATCTAGTCACTACAAACAATTGGAGGATTGGCTTGCAGAAGCAGCAGCAACAACAACTGGCTCAAATGTTACTAAAGATAAAGTGGAATCAATTTTAACTCTAGATTCTTGCTTTTGGGCACATGTTGAAGAGGCTCTTATTTCATGCAAAAAATTGTATGAAAAATCTAGTGACATTGAAAAGGATGAGGCAACAAGAAAATTGGTTGAATTTGAGAATTATGTGTATGGATTGCTCAAGGAATATGCAGTGTCACCAGAGATTTTCCTTGGTGAAAGTAGCTACATGGCATGGTGGAGTCAATATAAGAAAATTAAGGGGGCTTCATATAGTTCAAAACTCACATATTTTATGAGCAATGCTCATAATTATAATGTGGAATATGTTGGAGGAACTTATAAGTTTGATTGA

Protein sequence

>Msa0903370

FSSGIEVATFVTSSGLLRKLWNVSDANIVSNVVGNGLSWKVYKEQDTDVTIVAFETIPSNSVNLQYELVSSTELKEKNFLHFQFLSTKANPLFHLNINAVSLLCENHQRLDQLKSEVSSSSKLIITGLALGGSIASLFTLLLLDGFDSRKKKPLCITFGSPLVGDKGLQKSISNSSSWNSCFLHVVSCNDPLPRKFITKHTSSYVPFGTYLVCYDTYSTCFENPDSVLAVLETSIQDRSQVFGSIEYGNIVEKLHCKAICKDTANQPQQHDTDIITLEKNLESLEKKFIFQKREKVDQSKKLNSMKIDMALLEWYKKDSKNRNIGYYDSYKKMYSSSDQDVSKFRKSLTNYWKEMVQESLMKPQKEGASLRTRWLYGGTTYRRMVEPLDIAHYYLNEYHVNGGKDYVTTARSSHYKQLEDWLAEAAATTTGSNVTKDKVESILTLDSCFWAHVEEALISCKKLYEKSSDIEKDEATRKLVEFENYVYGLLKEYAVSPEIFLGESSYMAWWSQYKKIKGASYSSKLTYFMSNAHNYNVEYVGGTYKFD*