Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903370 | XP_003618326.2 | 81.739 | 575 | 72 | 3 | 1 | 547 | 7 | 576 | 0.0 | 907 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903370 | sp|Q4F883|SG101_ARATH | 36.991 | 565 | 280 | 20 | 4 | 535 | 9 | 530 | 7.68e-100 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0903370 | 0.824407 | 8.210405e-54 | -8.615850e-47 |
| Msa0085290 | Msa0903370 | 0.808596 | 2.865035e-50 | -8.615850e-47 |
| Msa0106530 | Msa0903370 | 0.803232 | 3.845515e-49 | -8.615850e-47 |
| Msa0825870 | Msa0903370 | 0.816757 | 4.690088e-52 | -8.615850e-47 |
| Msa0201530 | Msa0903370 | 0.827831 | 1.258664e-54 | -8.615850e-47 |
| Msa0387660 | Msa0903370 | 0.809601 | 1.745958e-50 | -8.615850e-47 |
| Msa0387690 | Msa0903370 | 0.812541 | 4.024436e-51 | -8.615850e-47 |
| Msa0244140 | Msa0903370 | 0.801292 | 9.645631e-49 | -8.615850e-47 |
| Msa0244190 | Msa0903370 | 0.824616 | 7.328629e-54 | -8.615850e-47 |
| Msa0269810 | Msa0903370 | 0.814416 | 1.558368e-51 | -8.615850e-47 |
| Msa0271550 | Msa0903370 | 0.811835 | 5.738232e-51 | -8.615850e-47 |
| Msa0319290 | Msa0903370 | 0.805045 | 1.613750e-49 | -8.615850e-47 |
| Msa0357830 | Msa0903370 | 0.812154 | 4.890305e-51 | -8.615850e-47 |
| Msa0357840 | Msa0903370 | 0.801326 | 9.491089e-49 | -8.615850e-47 |
| Msa0524440 | Msa0903370 | 0.809525 | 1.812472e-50 | -8.615850e-47 |
| Msa0574570 | Msa0903370 | 0.824781 | 6.703039e-54 | -8.615850e-47 |
| Msa0865330 | Msa0903370 | 0.805807 | 1.116994e-49 | -8.615850e-47 |
| Msa0870060 | Msa0903370 | 0.882641 | 8.784123e-71 | -8.615850e-47 |
| Msa0870830 | Msa0903370 | 0.803113 | 4.071085e-49 | -8.615850e-47 |
| Msa0875050 | Msa0903370 | 0.807781 | 4.274097e-50 | -8.615850e-47 |
| Msa0896890 | Msa0903370 | 0.800144 | 1.654494e-48 | -8.615850e-47 |
| Msa0898320 | Msa0903370 | 0.829014 | 6.522161e-55 | -8.615850e-47 |
| Msa0903370 | Msa0919530 | 0.826296 | 2.932354e-54 | -8.615850e-47 |
| Msa0903370 | Msa0935770 | 0.856119 | 3.989563e-62 | -8.615850e-47 |
| Msa0903370 | Msa0936530 | 0.819754 | 9.837846e-53 | -8.615850e-47 |
| Msa0903370 | Msa0936550 | 0.802007 | 6.881050e-49 | -8.615850e-47 |
| Msa0903370 | Msa0943190 | 0.815381 | 9.519211e-52 | -8.615850e-47 |
| Msa0903370 | Msa0972770 | 0.818587 | 1.813033e-52 | -8.615850e-47 |
| Msa0903370 | Msa0973520 | 0.815998 | 6.935404e-52 | -8.615850e-47 |
| Msa0903370 | Msa0973600 | 0.806982 | 6.314886e-50 | -8.615850e-47 |
| Msa0903370 | Msa0998460 | 0.810974 | 8.827856e-51 | -8.615850e-47 |
| Msa0903370 | Msa1100930 | 0.823068 | 1.690039e-53 | -8.615850e-47 |
| Msa0903370 | Msa1130390 | 0.817579 | 3.065177e-52 | -8.615850e-47 |
| Msa0903370 | Msa1201200 | 0.818919 | 1.524287e-52 | -8.615850e-47 |
| Msa0903370 | Msa1210110 | 0.813119 | 3.007575e-51 | -8.615850e-47 |
| Msa0903370 | Msa1236730 | 0.826157 | 3.165409e-54 | -8.615850e-47 |
| Msa0903370 | Msa1246700 | 0.805210 | 1.490134e-49 | -8.615850e-47 |
| Msa0903370 | Msa1317130 | 0.812903 | 3.354911e-51 | -8.615850e-47 |
| Msa0903370 | Msa1344890 | 0.804973 | 1.670006e-49 | -8.615850e-47 |
| Msa0903370 | Msa1457160 | 0.802080 | 6.647877e-49 | -8.615850e-47 |
| Msa0903370 | Msa1458510 | 0.851993 | 6.176505e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903370 | MtrunA17_Chr6g0451511 | 81.597 | 576 | 72 | 3 | 1 | 547 | 7 | 577 | 0.0 | 904 |
| Msa0903370 | MtrunA17_Chr6g0451531 | 55.043 | 585 | 207 | 14 | 1 | 546 | 9 | 576 | 0.0 | 582 |
| Msa0903370 | MtrunA17_Chr3g0107671 | 52.151 | 581 | 230 | 9 | 1 | 546 | 7 | 574 | 0.0 | 567 |
| Msa0903370 | MtrunA17_Chr6g0451541 | 52.241 | 580 | 225 | 11 | 1 | 542 | 9 | 574 | 0.0 | 562 |
| Msa0903370 | MtrunA17_Chr6g0451561 | 52.470 | 587 | 219 | 14 | 1 | 546 | 7 | 574 | 0.0 | 543 |
| Msa0903370 | MtrunA17_Chr3g0107661 | 53.403 | 191 | 80 | 3 | 1 | 185 | 7 | 194 | 1.63e-51 | 177 |
| Msa0903370 | MtrunA17_Chr3g0107651 | 56.250 | 112 | 49 | 0 | 269 | 380 | 25 | 136 | 5.24e-35 | 128 |
| Msa0903370 | MtrunA17_Chr3g0118251 | 22.047 | 508 | 269 | 14 | 111 | 510 | 111 | 599 | 6.41e-24 | 105 |
| Msa0903370 | MtrunA17_Chr8g0384621 | 24.927 | 341 | 226 | 9 | 204 | 517 | 274 | 611 | 5.34e-23 | 103 |
| Msa0903370 | MtrunA17_Chr8g0384621 | 45.652 | 92 | 44 | 3 | 116 | 202 | 125 | 215 | 1.50e-12 | 70.5 |
| Msa0903370 | MtrunA17_Chr3g0118541 | 26.736 | 288 | 161 | 12 | 202 | 455 | 287 | 558 | 5.11e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903370 | AT5G14930.2 | 36.991 | 565 | 280 | 20 | 4 | 535 | 9 | 530 | 7.81e-101 | 315 |
| Msa0903370 | AT3G52430.1 | 27.465 | 426 | 261 | 10 | 123 | 517 | 112 | 520 | 1.58e-36 | 143 |
| Msa0903370 | AT5G14930.3 | 34.263 | 251 | 121 | 8 | 4 | 230 | 9 | 239 | 5.65e-32 | 124 |
Find 89 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCTAGATTCTTGCTTT+TGG | 0.226739 | 6_2:+461408 | Msa0903370:CDS |
| CCATGAAGAACTATTTGATA+TGG | 0.263918 | 6_2:-460106 | None:intergenic |
| GAGGCTTCATCAATGATTCT+TGG | 0.273548 | 6_2:-461148 | None:intergenic |
| GAGTCAATATAAGAAAATTA+AGG | 0.303089 | 6_2:+461610 | Msa0903370:CDS |
| CCGGTCTTCTTCGAAAATTA+TGG | 0.305259 | 6_2:+459244 | Msa0903370:CDS |
| GCAACATTTGTGACAAGTTC+CGG | 0.320944 | 6_2:+459225 | Msa0903370:CDS |
| TTCACTTTATTACTATTAGA+TGG | 0.321607 | 6_2:+460006 | Msa0903370:CDS |
| CAAACACTTGACTTCGATCC+TGG | 0.327055 | 6_2:-460299 | None:intergenic |
| GTGTTTGGTTCTATAGAGTA+TGG | 0.329217 | 6_2:+460315 | Msa0903370:CDS |
| GGATGAGGCAACAAGAAAAT+TGG | 0.331734 | 6_2:+461496 | Msa0903370:CDS |
| AAACCTCTTTGCATCACCTT+TGG | 0.355006 | 6_2:+460048 | Msa0903370:CDS |
| TGTCAATCTTCAATATGAAT+TGG | 0.365538 | 6_2:+459386 | Msa0903370:CDS |
| CCATATCAAATAGTTCTTCA+TGG | 0.366653 | 6_2:+460106 | Msa0903370:CDS |
| TCCAGTGATTATCAGCTTAG+AGG | 0.371768 | 6_2:-459953 | None:intergenic |
| AAGATTGAATATTGTAAGAA+TGG | 0.372020 | 6_2:+461827 | Msa0903370:three_prime_UTR |
| TTGCAAGGACACCGCAAATC+AGG | 0.381433 | 6_2:+460371 | Msa0903370:CDS |
| GTTTCAAATGTTGTTGGTAA+TGG | 0.385871 | 6_2:+459288 | Msa0903370:CDS |
| TGAAGATTGACAGAATTTGA+TGG | 0.388886 | 6_2:-459375 | None:intergenic |
| TTCGGAACTTACTAACATCT+TGG | 0.398246 | 6_2:-461094 | None:intergenic |
| GAAGCAGCAGCAACAACAAC+TGG | 0.402120 | 6_2:+461350 | Msa0903370:CDS |
| AGAACTGCTAAAACAGAATC+AGG | 0.410566 | 6_2:-460264 | None:intergenic |
| AGTTACAATATTTCCACATA+AGG | 0.422650 | 6_2:-461783 | None:intergenic |
| ATAATCACTGGACTTGCTCT+TGG | 0.433666 | 6_2:+459964 | Msa0903370:CDS |
| TAGATTTAGCAGTGGAATAG+AGG | 0.436219 | 6_2:+459200 | None:intergenic |
| ATCTAGTCACTACAAACAAT+TGG | 0.438035 | 6_2:+461313 | Msa0903370:CDS |
| ACCTTTGGTTCTCCACTAGT+TGG | 0.448784 | 6_2:+460063 | Msa0903370:CDS |
| AATTATAATGTGGAATATGT+TGG | 0.449521 | 6_2:+461680 | Msa0903370:CDS |
| AGTCAATATAAGAAAATTAA+GGG | 0.452975 | 6_2:+461611 | Msa0903370:CDS |
| CACAAACTATTGGAAAGAAA+TGG | 0.453048 | 6_2:+461124 | Msa0903370:CDS |
| GAAACTTCTATCACCTTATG+TGG | 0.454329 | 6_2:+461770 | Msa0903370:three_prime_UTR |
| ATTGACAGAATTTGATGGTA+TGG | 0.456226 | 6_2:-459370 | None:intergenic |
| GAATTTGAGAATTATGTGTA+TGG | 0.458115 | 6_2:+461521 | Msa0903370:CDS |
| AGTTCTTGAGACGTCAATCC+AGG | 0.459017 | 6_2:+460281 | Msa0903370:CDS |
| CAGGATCGAAGTCAAGTGTT+TGG | 0.471867 | 6_2:+460300 | Msa0903370:CDS |
| GAAAACAATTATAGAGAAAG+TGG | 0.473349 | 6_2:-461853 | None:intergenic |
| CCTTGGTGAAAGTAGCTACA+TGG | 0.476739 | 6_2:+461580 | Msa0903370:CDS |
| AACATTGTTTCAAATGTTGT+TGG | 0.478673 | 6_2:+459282 | Msa0903370:CDS |
| TCTACGGCGGAACAACTTAT+CGG | 0.482472 | 6_2:+461204 | Msa0903370:CDS |
| TAATAATGAGCAATGTCTAA+TGG | 0.485989 | 6_2:-461239 | None:intergenic |
| AAATGTTACTAAAGATAAAG+TGG | 0.486163 | 6_2:+461376 | Msa0903370:CDS |
| GTGATGAACTTCCTGGGAAG+TGG | 0.492900 | 6_2:-460165 | None:intergenic |
| GTCAATATAAGAAAATTAAG+GGG | 0.494372 | 6_2:+461612 | Msa0903370:CDS |
| CTCAATGAATACCATGTCAA+TGG | 0.497345 | 6_2:+461263 | Msa0903370:CDS |
| ATCACTGGACTTGCTCTTGG+AGG | 0.501122 | 6_2:+459967 | Msa0903370:CDS |
| ACTACAAACAATTGGAGGAT+TGG | 0.502313 | 6_2:+461321 | Msa0903370:CDS |
| CCTTGCAAATTGCTTTGCAA+TGG | 0.507166 | 6_2:-460356 | None:intergenic |
| AAAATCTAGTGACATTGAAA+AGG | 0.507800 | 6_2:+461475 | Msa0903370:CDS |
| CTTCGTACTCGTTGGCTCTA+CGG | 0.512139 | 6_2:+461188 | Msa0903370:CDS |
| ACTAGTTCTTATGTGCCCTT+CGG | 0.528063 | 6_2:+460195 | Msa0903370:CDS |
| CTTGCAATGATCCACTTCCC+AGG | 0.534110 | 6_2:+460154 | Msa0903370:CDS |
| TCCTCTAAGCTGATAATCAC+TGG | 0.534233 | 6_2:+459952 | Msa0903370:CDS |
| TAGACATGGCTCTACTTGAA+TGG | 0.536032 | 6_2:+461000 | Msa0903370:CDS |
| CTTTCACCAAGGAAAATCTC+TGG | 0.540545 | 6_2:-461569 | None:intergenic |
| AAGAATTATCACTATCCTTG+TGG | 0.541843 | 6_2:+461724 | Msa0903370:exon |
| TTGATGAAGCCTCAGAAAGA+AGG | 0.542621 | 6_2:+461158 | Msa0903370:CDS |
| AGCGACGCTCCTTCTTTCTG+AGG | 0.544608 | 6_2:-461167 | None:intergenic |
| TTTCTTTCCAATAGTTTGTG+AGG | 0.545370 | 6_2:-461121 | None:intergenic |
| GGTTTCATCTACTGAACTCA+AGG | 0.548055 | 6_2:+459407 | Msa0903370:CDS |
| CGGAACAACTTATCGGAGAA+TGG | 0.549150 | 6_2:+461211 | Msa0903370:CDS |
| TATAATGTGGAATATGTTGG+AGG | 0.558258 | 6_2:+461683 | Msa0903370:CDS |
| TAGTCACTACAAACAATTGG+AGG | 0.569273 | 6_2:+461316 | Msa0903370:CDS |
| CATGCCTTGAACCTGATTTG+CGG | 0.572134 | 6_2:-460382 | None:intergenic |
| TAGTGACATTGAAAAGGATG+AGG | 0.574070 | 6_2:+461481 | Msa0903370:CDS |
| TCTCCACTAGTTGGTGACAA+AGG | 0.579237 | 6_2:+460072 | Msa0903370:CDS |
| GAGCGTCGCTTCGTACTCGT+TGG | 0.580717 | 6_2:+461180 | Msa0903370:CDS |
| TGGTAATGGACTATCATGGA+AGG | 0.600418 | 6_2:+459302 | Msa0903370:CDS |
| TCCTTTGTGAAAATCATCAG+AGG | 0.604150 | 6_2:+459508 | Msa0903370:CDS |
| CAATGCTCATAATTATAATG+TGG | 0.604459 | 6_2:+461670 | Msa0903370:CDS |
| ACCAACTAGTGGAGAACCAA+AGG | 0.608258 | 6_2:-460064 | None:intergenic |
| AGTCTTTACCACCATTGACA+TGG | 0.609609 | 6_2:-461274 | None:intergenic |
| TCTACTTGAATGGTACAAGA+AGG | 0.611495 | 6_2:+461010 | Msa0903370:CDS |
| AATCCTTTGTCACCAACTAG+TGG | 0.611681 | 6_2:-460075 | None:intergenic |
| AATGAATACCATGTCAATGG+TGG | 0.624112 | 6_2:+461266 | Msa0903370:CDS |
| CCATTGCAAAGCAATTTGCA+AGG | 0.624372 | 6_2:+460356 | Msa0903370:CDS |
| TTATGTGTATGGATTGCTCA+AGG | 0.625770 | 6_2:+461532 | Msa0903370:CDS |
| TGTTGTTATAGATTTAGCAG+TGG | 0.627560 | 6_2:+459192 | None:intergenic |
| CACACGAGATATGTTCCGAA+GGG | 0.637916 | 6_2:-460210 | None:intergenic |
| GAACCAAAGGTGATGCAAAG+AGG | 0.640380 | 6_2:-460051 | None:intergenic |
| ACACACGAGATATGTTCCGA+AGG | 0.646058 | 6_2:-460211 | None:intergenic |
| TTGTTGGTAATGGACTATCA+TGG | 0.647617 | 6_2:+459298 | Msa0903370:CDS |
| ATATCAGTGTCATGTTGTTG+CGG | 0.654632 | 6_2:-460879 | None:intergenic |
| GCTTGATCAATTGAAATCTG+AGG | 0.655762 | 6_2:+459530 | Msa0903370:CDS |
| TCAATATAAGAAAATTAAGG+GGG | 0.670997 | 6_2:+461613 | Msa0903370:CDS |
| CGTACTCGTTGGCTCTACGG+CGG | 0.687866 | 6_2:+461191 | Msa0903370:CDS |
| AAAGTAGCTACATGGCATGG+TGG | 0.693626 | 6_2:+461588 | Msa0903370:CDS |
| CCATGTAGCTACTTTCACCA+AGG | 0.700600 | 6_2:-461580 | None:intergenic |
| GTGAAAGTAGCTACATGGCA+TGG | 0.700779 | 6_2:+461585 | Msa0903370:CDS |
| GAATTCAATGAAGATAGACA+TGG | 0.703021 | 6_2:+460986 | Msa0903370:CDS |
| TTATACATAGCTAAACCACA+AGG | 0.765872 | 6_2:-461739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATGTTTGATCAAATTA+AGG | - | chr6_2:459908-459927 | None:intergenic | 15.0% |
| !!! | CATTACTTTAGAAAAAAATT+TGG | + | chr6_2:460902-460921 | Msa0903370:CDS | 15.0% |
| !!! | AAAAATGAATTTTTTCTCTA+GGG | - | chr6_2:460931-460950 | None:intergenic | 15.0% |
| !!! | AAAAATTCATTTTTCAGAAA+AGG | + | chr6_2:460937-460956 | Msa0903370:CDS | 15.0% |
| !!! | AAAATTCATTTTTCAGAAAA+GGG | + | chr6_2:460938-460957 | Msa0903370:CDS | 15.0% |
| !! | AGTCAATATAAGAAAATTAA+GGG | + | chr6_2:461611-461630 | Msa0903370:CDS | 15.0% |
| !! | TTAATGTTAAGATGAAAAAG+CGG | - | chr6_2:459477-459496 | None:intergenic | 20.0% |
| !! | TAAGAGTAAATAAGCTATAA+GGG | - | chr6_2:459624-459643 | None:intergenic | 20.0% |
| !! | TTCACTTTATTACTATTAGA+TGG | + | chr6_2:460006-460025 | Msa0903370:CDS | 20.0% |
| !!! | CTTAGCAATGTTTTAAATTA+TGG | + | chr6_2:460491-460510 | Msa0903370:intron | 20.0% |
| !!! | AATTAAAGAACTATTTTCTC+CGG | - | chr6_2:460753-460772 | None:intergenic | 20.0% |
| !! | AAAAATACTGTTTAATCACT+AGG | - | chr6_2:460812-460831 | None:intergenic | 20.0% |
| !!! | GAAAAATGAATTTTTTCTCT+AGG | - | chr6_2:460932-460951 | None:intergenic | 20.0% |
| !!! | CTTCATTGAATTCAATTTTT+TGG | - | chr6_2:460979-460998 | None:intergenic | 20.0% |
| !! | ATTCAAAAAACAGAAACATA+GGG | + | chr6_2:461033-461052 | Msa0903370:CDS | 20.0% |
| !! | AAATGTTACTAAAGATAAAG+TGG | + | chr6_2:461376-461395 | Msa0903370:CDS | 20.0% |
| !! | GAGTCAATATAAGAAAATTA+AGG | + | chr6_2:461610-461629 | Msa0903370:CDS | 20.0% |
| !! | GTCAATATAAGAAAATTAAG+GGG | + | chr6_2:461612-461631 | Msa0903370:CDS | 20.0% |
| !! | TCAATATAAGAAAATTAAGG+GGG | + | chr6_2:461613-461632 | Msa0903370:CDS | 20.0% |
| !! | AATTATAATGTGGAATATGT+TGG | + | chr6_2:461680-461699 | Msa0903370:CDS | 20.0% |
| !! | AAGATTGAATATTGTAAGAA+TGG | + | chr6_2:461827-461846 | Msa0903370:three_prime_UTR | 20.0% |
| ! | AACATTGTTTCAAATGTTGT+TGG | + | chr6_2:459282-459301 | Msa0903370:CDS | 25.0% |
| ! | TGTCAATCTTCAATATGAAT+TGG | + | chr6_2:459386-459405 | Msa0903370:CDS | 25.0% |
| ! | TACTCAAAAACTGAAAATGA+AGG | - | chr6_2:459443-459462 | None:intergenic | 25.0% |
| ! | AAAGAGTTAGAATAATGACA+AGG | - | chr6_2:459566-459585 | None:intergenic | 25.0% |
| !!! | CTATGTTATCACTTTTTCAT+AGG | - | chr6_2:459598-459617 | None:intergenic | 25.0% |
| ! | ATGAAAAAGTGATAACATAG+TGG | + | chr6_2:459598-459617 | Msa0903370:intron | 25.0% |
| ! | CTAAGAGTAAATAAGCTATA+AGG | - | chr6_2:459625-459644 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATGTCTCAATG+TGG | - | chr6_2:460584-460603 | None:intergenic | 25.0% |
| !! | TAAAAAAAGTACATGTAGTC+TGG | + | chr6_2:460680-460699 | Msa0903370:intron | 25.0% |
| !! | ATATACGCAAAAAAAGTACA+TGG | - | chr6_2:460724-460743 | None:intergenic | 25.0% |
| ! | GATTCAAAAAACAGAAACAT+AGG | + | chr6_2:461032-461051 | Msa0903370:CDS | 25.0% |
| ! | TAATAATGAGCAATGTCTAA+TGG | - | chr6_2:461242-461261 | None:intergenic | 25.0% |
| ! | AAAATCTAGTGACATTGAAA+AGG | + | chr6_2:461475-461494 | Msa0903370:CDS | 25.0% |
| ! | GAATTTGAGAATTATGTGTA+TGG | + | chr6_2:461521-461540 | Msa0903370:CDS | 25.0% |
| ! | CAATGCTCATAATTATAATG+TGG | + | chr6_2:461670-461689 | Msa0903370:CDS | 25.0% |
| ! | AGTTACAATATTTCCACATA+AGG | - | chr6_2:461786-461805 | None:intergenic | 25.0% |
| ! | GAAAACAATTATAGAGAAAG+TGG | - | chr6_2:461856-461875 | None:intergenic | 25.0% |
| ! | GTTTCAAATGTTGTTGGTAA+TGG | + | chr6_2:459288-459307 | Msa0903370:CDS | 30.0% |
| ! | ATTGACAGAATTTGATGGTA+TGG | - | chr6_2:459373-459392 | None:intergenic | 30.0% |
| TGAAGATTGACAGAATTTGA+TGG | - | chr6_2:459378-459397 | None:intergenic | 30.0% | |
| TGTTTCAATAAGCTAGTGAA+TGG | - | chr6_2:459785-459804 | None:intergenic | 30.0% | |
| CATAATAACAATCCTAATGC+AGG | + | chr6_2:459921-459940 | Msa0903370:intron | 30.0% | |
| CCATGAAGAACTATTTGATA+TGG | - | chr6_2:460109-460128 | None:intergenic | 30.0% | |
| CCATATCAAATAGTTCTTCA+TGG | + | chr6_2:460106-460125 | Msa0903370:CDS | 30.0% | |
| GTATTATTCTGATTCACTAC+AGG | + | chr6_2:460404-460423 | Msa0903370:intron | 30.0% | |
| ! | TTTTTGCGTATATTTGAGTC+CGG | + | chr6_2:460731-460750 | Msa0903370:intron | 30.0% |
| ACTAGGAAATAACTCTAACA+AGG | - | chr6_2:460795-460814 | None:intergenic | 30.0% | |
| GAATTCAATGAAGATAGACA+TGG | + | chr6_2:460986-461005 | Msa0903370:CDS | 30.0% | |
| !! | AATAGTTTGTGAGGCTTTTT+CGG | - | chr6_2:461115-461134 | None:intergenic | 30.0% |
| ! | TTTCTTTCCAATAGTTTGTG+AGG | - | chr6_2:461124-461143 | None:intergenic | 30.0% |
| CACAAACTATTGGAAAGAAA+TGG | + | chr6_2:461124-461143 | Msa0903370:CDS | 30.0% | |
| ATCTAGTCACTACAAACAAT+TGG | + | chr6_2:461313-461332 | Msa0903370:CDS | 30.0% | |
| ! | TAACTCTAGATTCTTGCTTT+TGG | + | chr6_2:461408-461427 | Msa0903370:CDS | 30.0% |
| !! | AACTCTAGATTCTTGCTTTT+GGG | + | chr6_2:461409-461428 | Msa0903370:CDS | 30.0% |
| TATAATGTGGAATATGTTGG+AGG | + | chr6_2:461683-461702 | Msa0903370:CDS | 30.0% | |
| AAGAATTATCACTATCCTTG+TGG | + | chr6_2:461724-461743 | Msa0903370:exon | 30.0% | |
| TTATACATAGCTAAACCACA+AGG | - | chr6_2:461742-461761 | None:intergenic | 30.0% | |
| ! | CCATAATTTTCGAAGAAGAC+CGG | - | chr6_2:459247-459266 | None:intergenic | 35.0% |
| !! | TTGTTGGTAATGGACTATCA+TGG | + | chr6_2:459298-459317 | Msa0903370:CDS | 35.0% |
| TCCTTTGTGAAAATCATCAG+AGG | + | chr6_2:459508-459527 | Msa0903370:CDS | 35.0% | |
| GCTTGATCAATTGAAATCTG+AGG | + | chr6_2:459530-459549 | Msa0903370:CDS | 35.0% | |
| TGTAAGAGTTTACTGTCAGA+AGG | + | chr6_2:459664-459683 | Msa0903370:intron | 35.0% | |
| AATCACGCGGAAACAATATT+TGG | - | chr6_2:459704-459723 | None:intergenic | 35.0% | |
| CCAGTTAAGGACAAATTGTT+CGG | - | chr6_2:459742-459761 | None:intergenic | 35.0% | |
| TGGTTAAAGAGTTCCAGTTA+AGG | - | chr6_2:459755-459774 | None:intergenic | 35.0% | |
| ! | TGTTTTGTGATGAACTTCCT+GGG | - | chr6_2:460174-460193 | None:intergenic | 35.0% |
| ! | ATGTTTTGTGATGAACTTCC+TGG | - | chr6_2:460175-460194 | None:intergenic | 35.0% |
| AGAACTGCTAAAACAGAATC+AGG | - | chr6_2:460267-460286 | None:intergenic | 35.0% | |
| !! | GTGTTTGGTTCTATAGAGTA+TGG | + | chr6_2:460315-460334 | Msa0903370:CDS | 35.0% |
| TATTAAGCTACCTGCATATG+TGG | - | chr6_2:460468-460487 | None:intergenic | 35.0% | |
| AGAGACGTGATTTGAAGAAA+AGG | - | chr6_2:460636-460655 | None:intergenic | 35.0% | |
| ATATCAGTGTCATGTTGTTG+CGG | - | chr6_2:460882-460901 | None:intergenic | 35.0% | |
| TCTACTTGAATGGTACAAGA+AGG | + | chr6_2:461010-461029 | Msa0903370:CDS | 35.0% | |
| TTCGGAACTTACTAACATCT+TGG | - | chr6_2:461097-461116 | None:intergenic | 35.0% | |
| GAAAAAGCCTCACAAACTAT+TGG | + | chr6_2:461114-461133 | Msa0903370:CDS | 35.0% | |
| CTCAATGAATACCATGTCAA+TGG | + | chr6_2:461263-461282 | Msa0903370:CDS | 35.0% | |
| AATGAATACCATGTCAATGG+TGG | + | chr6_2:461266-461285 | Msa0903370:CDS | 35.0% | |
| TAGTCACTACAAACAATTGG+AGG | + | chr6_2:461316-461335 | Msa0903370:CDS | 35.0% | |
| ACTACAAACAATTGGAGGAT+TGG | + | chr6_2:461321-461340 | Msa0903370:CDS | 35.0% | |
| TAGTGACATTGAAAAGGATG+AGG | + | chr6_2:461481-461500 | Msa0903370:CDS | 35.0% | |
| ! | TTATGTGTATGGATTGCTCA+AGG | + | chr6_2:461532-461551 | Msa0903370:CDS | 35.0% |
| GAAACTTCTATCACCTTATG+TGG | + | chr6_2:461770-461789 | Msa0903370:three_prime_UTR | 35.0% | |
| GCAACATTTGTGACAAGTTC+CGG | + | chr6_2:459225-459244 | Msa0903370:CDS | 40.0% | |
| CCGGTCTTCTTCGAAAATTA+TGG | + | chr6_2:459244-459263 | Msa0903370:CDS | 40.0% | |
| !! | TGGTAATGGACTATCATGGA+AGG | + | chr6_2:459302-459321 | Msa0903370:CDS | 40.0% |
| GGTTTCATCTACTGAACTCA+AGG | + | chr6_2:459407-459426 | Msa0903370:CDS | 40.0% | |
| ! | GCCTCTGATGATTTTCACAA+AGG | - | chr6_2:459512-459531 | None:intergenic | 40.0% |
| CCGAACAATTTGTCCTTAAC+TGG | + | chr6_2:459739-459758 | Msa0903370:intron | 40.0% | |
| TCCTCTAAGCTGATAATCAC+TGG | + | chr6_2:459952-459971 | Msa0903370:CDS | 40.0% | |
| TCCAGTGATTATCAGCTTAG+AGG | - | chr6_2:459956-459975 | None:intergenic | 40.0% | |
| ! | ATAATCACTGGACTTGCTCT+TGG | + | chr6_2:459964-459983 | Msa0903370:CDS | 40.0% |
| AAACCTCTTTGCATCACCTT+TGG | + | chr6_2:460048-460067 | Msa0903370:CDS | 40.0% | |
| AATCCTTTGTCACCAACTAG+TGG | - | chr6_2:460078-460097 | None:intergenic | 40.0% | |
| ! | ACTAGTTCTTATGTGCCCTT+CGG | + | chr6_2:460195-460214 | Msa0903370:CDS | 40.0% |
| CCTTGCAAATTGCTTTGCAA+TGG | - | chr6_2:460359-460378 | None:intergenic | 40.0% | |
| CCATTGCAAAGCAATTTGCA+AGG | + | chr6_2:460356-460375 | Msa0903370:CDS | 40.0% | |
| GATTCACTACAGGCATGTAT+TGG | + | chr6_2:460414-460433 | Msa0903370:intron | 40.0% | |
| AATCACGTCTCTTACTACTC+TGG | + | chr6_2:460644-460663 | Msa0903370:intron | 40.0% | |
| ! | TAGACATGGCTCTACTTGAA+TGG | + | chr6_2:461000-461019 | Msa0903370:CDS | 40.0% |
| GAGGCTTCATCAATGATTCT+TGG | - | chr6_2:461151-461170 | None:intergenic | 40.0% | |
| TTGATGAAGCCTCAGAAAGA+AGG | + | chr6_2:461158-461177 | Msa0903370:CDS | 40.0% | |
| AGTCTTTACCACCATTGACA+TGG | - | chr6_2:461277-461296 | None:intergenic | 40.0% | |
| GGATGAGGCAACAAGAAAAT+TGG | + | chr6_2:461496-461515 | Msa0903370:CDS | 40.0% | |
| CTTTCACCAAGGAAAATCTC+TGG | - | chr6_2:461572-461591 | None:intergenic | 40.0% | |
| ! | TTCCGCGTGATTTGTGTTTG+AGG | + | chr6_2:459712-459731 | Msa0903370:intron | 45.0% |
| GACCTCAAACACAAATCACG+CGG | - | chr6_2:459717-459736 | None:intergenic | 45.0% | |
| AGGAGCTACTAACCTGCATT+AGG | - | chr6_2:459936-459955 | None:intergenic | 45.0% | |
| GAACCAAAGGTGATGCAAAG+AGG | - | chr6_2:460054-460073 | None:intergenic | 45.0% | |
| !! | ACCTTTGGTTCTCCACTAGT+TGG | + | chr6_2:460063-460082 | Msa0903370:CDS | 45.0% |
| ACCAACTAGTGGAGAACCAA+AGG | - | chr6_2:460067-460086 | None:intergenic | 45.0% | |
| !! | TCTCCACTAGTTGGTGACAA+AGG | + | chr6_2:460072-460091 | Msa0903370:CDS | 45.0% |
| CACACGAGATATGTTCCGAA+GGG | - | chr6_2:460213-460232 | None:intergenic | 45.0% | |
| ACACACGAGATATGTTCCGA+AGG | - | chr6_2:460214-460233 | None:intergenic | 45.0% | |
| AGTTCTTGAGACGTCAATCC+AGG | + | chr6_2:460281-460300 | Msa0903370:CDS | 45.0% | |
| CAAACACTTGACTTCGATCC+TGG | - | chr6_2:460302-460321 | None:intergenic | 45.0% | |
| CAGGATCGAAGTCAAGTGTT+TGG | + | chr6_2:460300-460319 | Msa0903370:CDS | 45.0% | |
| ! | CATGCCTTGAACCTGATTTG+CGG | - | chr6_2:460385-460404 | None:intergenic | 45.0% |
| AGGATTGTCACCACATATGC+AGG | + | chr6_2:460455-460474 | Msa0903370:intron | 45.0% | |
| CATGTAGTCTGGTCCAAATG+CGG | + | chr6_2:460691-460710 | Msa0903370:intron | 45.0% | |
| ACATGGATCTAGTCCGCATT+TGG | - | chr6_2:460707-460726 | None:intergenic | 45.0% | |
| TCTACGGCGGAACAACTTAT+CGG | + | chr6_2:461204-461223 | Msa0903370:CDS | 45.0% | |
| CGGAACAACTTATCGGAGAA+TGG | + | chr6_2:461211-461230 | Msa0903370:CDS | 45.0% | |
| ! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6_2:461424-461443 | Msa0903370:CDS | 45.0% |
| ! | GTGTCACCAGAGATTTTCCT+TGG | + | chr6_2:461563-461582 | Msa0903370:CDS | 45.0% |
| ! | CCATGTAGCTACTTTCACCA+AGG | - | chr6_2:461583-461602 | None:intergenic | 45.0% |
| CCTTGGTGAAAGTAGCTACA+TGG | + | chr6_2:461580-461599 | Msa0903370:CDS | 45.0% | |
| GTGAAAGTAGCTACATGGCA+TGG | + | chr6_2:461585-461604 | Msa0903370:CDS | 45.0% | |
| AAAGTAGCTACATGGCATGG+TGG | + | chr6_2:461588-461607 | Msa0903370:CDS | 45.0% | |
| ! | AGCTAGTGAATGGACTCGAG+TGG | - | chr6_2:459775-459794 | None:intergenic | 50.0% |
| ! | ATCACTGGACTTGCTCTTGG+AGG | + | chr6_2:459967-459986 | Msa0903370:CDS | 50.0% |
| CTTGCAATGATCCACTTCCC+AGG | + | chr6_2:460154-460173 | Msa0903370:CDS | 50.0% | |
| GTGATGAACTTCCTGGGAAG+TGG | - | chr6_2:460168-460187 | None:intergenic | 50.0% | |
| TTGCAAGGACACCGCAAATC+AGG | + | chr6_2:460371-460390 | Msa0903370:CDS | 50.0% | |
| GACACCGCAAATCAGGTTCA+AGG | + | chr6_2:460378-460397 | Msa0903370:intron | 50.0% | |
| TATCATGACCTAGATCGCGC+TGG | + | chr6_2:460606-460625 | Msa0903370:intron | 50.0% | |
| !! | CTTCGTACTCGTTGGCTCTA+CGG | + | chr6_2:461188-461207 | Msa0903370:CDS | 50.0% |
| GAAGCAGCAGCAACAACAAC+TGG | + | chr6_2:461350-461369 | Msa0903370:CDS | 50.0% | |
| GGCTTGCAATTGTTCGCGCT+AGG | + | chr6_2:460435-460454 | Msa0903370:intron | 55.0% | |
| AAGGTCAACCAGCGCGATCT+AGG | - | chr6_2:460617-460636 | None:intergenic | 55.0% | |
| AGCGACGCTCCTTCTTTCTG+AGG | - | chr6_2:461170-461189 | None:intergenic | 55.0% | |
| ! | GAGCGTCGCTTCGTACTCGT+TGG | + | chr6_2:461180-461199 | Msa0903370:CDS | 60.0% |
| !! | CGTACTCGTTGGCTCTACGG+CGG | + | chr6_2:461191-461210 | Msa0903370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 459204 | 461886 | 459204 | ID=Msa0903370;Name=Msa0903370 |
| chr6_2 | mRNA | 459204 | 461886 | 459204 | ID=Msa0903370-mRNA-1;Parent=Msa0903370;Name=Msa0903370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|162|547 |
| chr6_2 | exon | 459204 | 459551 | 459204 | ID=Msa0903370-mRNA-1:exon:209;Parent=Msa0903370-mRNA-1 |
| chr6_2 | exon | 459943 | 460392 | 459943 | ID=Msa0903370-mRNA-1:exon:210;Parent=Msa0903370-mRNA-1 |
| chr6_2 | exon | 460879 | 461886 | 460879 | ID=Msa0903370-mRNA-1:exon:211;Parent=Msa0903370-mRNA-1 |
| chr6_2 | CDS | 459204 | 459551 | 459204 | ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1 |
| chr6_2 | CDS | 459943 | 460392 | 459943 | ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1 |
| chr6_2 | CDS | 460879 | 461724 | 460879 | ID=Msa0903370-mRNA-1:cds;Parent=Msa0903370-mRNA-1 |
| chr6_2 | three_prime_UTR | 461725 | 461886 | 461725 | ID=Msa0903370-mRNA-1:three_prime_utr;Parent=Msa0903370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
