AlfalfaGEDB | Msa0903870

M. sativa cultivar zhongmu-4 / Msa0903870

KEGG: K00472
GO: GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564
PFAM: PF13640.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903870	XP_003618430.1	83.810	315	11	4	1	277	1	313	0.0	513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903870	sp\|Q8L970\|P4H7_ARATH	56.825	315	89	4	6	277	6	316	1.18e-123	358

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024400	Msa0903870	0.800412	1.459164e-48	-8.615850e-47
Msa0068020	Msa0903870	0.809645	1.708202e-50	-8.615850e-47
Msa0177960	Msa0903870	0.801628	8.230632e-49	-8.615850e-47
Msa0190590	Msa0903870	0.801725	7.862075e-49	-8.615850e-47
Msa0217670	Msa0903870	0.802240	6.161275e-49	-8.615850e-47
Msa0257490	Msa0903870	0.817169	3.790849e-52	-8.615850e-47
Msa0280370	Msa0903870	0.813650	2.299015e-51	-8.615850e-47
Msa0296790	Msa0903870	0.815248	1.018767e-51	-8.615850e-47
Msa0385500	Msa0903870	0.823306	1.486727e-53	-8.615850e-47
Msa0610550	Msa0903870	0.801146	1.033315e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903870	MtrunA17_Chr6g0452281	83.810	315	11	4	1	277	1	313	0.0	513
Msa0903870	MtrunA17_Chr2g0286811	53.901	282	86	3	34	275	26	303	6.31e-103	302
Msa0903870	MtrunA17_Chr4g0066531	52.768	271	86	3	43	275	32	298	8.78e-97	286
Msa0903870	MtrunA17_Chr3g0143381	44.882	254	103	3	6	222	26	279	2.13e-70	218
Msa0903870	MtrunA17_Chr5g0406051	48.341	211	73	2	48	222	78	288	4.01e-66	207
Msa0903870	MtrunA17_Chr6g0470551	38.411	302	147	6	6	275	3	297	5.15e-65	205
Msa0903870	MtrunA17_Chr8g0371281	45.798	238	89	4	21	221	41	275	5.78e-65	204
Msa0903870	MtrunA17_Chr8g0371221	45.798	238	90	4	21	221	41	276	5.05e-64	202
Msa0903870	MtrunA17_Chr8g0371251	43.277	238	99	2	21	222	41	278	9.99e-63	199
Msa0903870	MtrunA17_Chr8g0371231	53.103	145	67	1	76	219	55	199	2.59e-51	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903870	AT3G28480.1	56.825	315	89	4	6	277	6	316	1.20e-124	358
Msa0903870	AT3G28480.2	55.418	323	89	4	6	277	6	324	1.82e-123	355
Msa0903870	AT3G28490.1	58.582	268	68	2	44	275	28	288	8.90e-112	324
Msa0903870	AT5G18900.1	52.015	273	89	3	41	275	30	298	6.84e-95	281
Msa0903870	AT3G06300.1	53.731	268	80	4	47	275	37	299	9.88e-94	279
Msa0903870	AT4G25600.1	45.946	259	106	7	36	275	48	291	5.99e-72	223
Msa0903870	AT1G20270.1	49.038	208	70	2	51	222	79	286	1.74e-64	204
Msa0903870	AT2G17720.1	47.867	211	74	2	48	222	80	290	1.02e-63	202
Msa0903870	AT4G35810.1	49.275	207	69	2	51	221	83	289	1.62e-63	201
Msa0903870	AT4G35810.2	49.275	207	69	2	51	221	83	289	1.62e-63	201

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Find 64 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGAGAGATTAGAGAG+AGG	0.547974	6_2:+1302304	None:intergenic
AACAAGGCGTCACCCTTCCG+AGG	0.602551	6_2:+1297977	None:intergenic
AACTGAATAGAAATGAAGAC+AGG	0.561864	6_2:-1297595	Msa0903870:three_prime_UTR
AAGACAGGAGTTCTCCTCTA+GGG	0.559597	6_2:-1297580	Msa0903870:three_prime_UTR
AAGGAGAGATTTATTTGTAA+AGG	0.449994	6_2:+1297545	None:intergenic
AAGGCTAATCAACGACTTGG+CGG	0.579353	6_2:-1298861	Msa0903870:CDS
AATAAGAGAGATTAGAGAGA+GGG	0.438010	6_2:+1302305	None:intergenic
AATGTTAATTAAATGTTAAT+TGG	0.206561	6_2:+1302357	None:intergenic
AATGTTTGCTCTTCTTAGAG+TGG	0.521716	6_2:-1297686	Msa0903870:exon
ACAATGGAAGAAAACGAGGT+TGG	0.559292	6_2:+1302201	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGAGAGATTAGAGAGA+GGG	+	chr6_2:1297625-1297644	None:intergenic	30.0%
AAATAAGAGAGATTAGAGAG+AGG	+	chr6_2:1297626-1297645	None:intergenic	30.0%
TCGATAACGTGTTTATAAGT+CGG	-	chr6_2:1298308-1298327	Msa0903870:intron	30.0%
TATAGGTTTGAATTAGGCTA+TGG	-	chr6_2:1298465-1298484	Msa0903870:intron	30.0%
TTGAATTAGGCTATGGTATT+TGG	-	chr6_2:1298472-1298491	Msa0903870:intron	30.0%
ATTCCTTCACAAATTTCCTA+TGG	-	chr6_2:1298597-1298616	Msa0903870:intron	30.0%
AAAATCGGTGTGTAAAGTAA+GGG	+	chr6_2:1298720-1298739	None:intergenic	30.0%
ATTCCTTCACAAATTTCCTA+GGG	-	chr6_2:1298597-1298616	Msa0903870:intron	30.0%
CCCTCTTATAAACTAATTTC+CGG	+	chr6_2:1299323-1299342	None:intergenic	30.0%
ATATAACAAGAACCATGTGT+TGG	+	chr6_2:1299790-1299809	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	1297502	1302447	1297502	ID=Msa0903870;Name=Msa0903870
chr6_2	mRNA	1297502	1302447	1297502	ID=Msa0903870-mRNA-1;Parent=Msa0903870;Name=Msa0903870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=219\|0.83\|1\|1\|1\|1\|7\|189\|277
chr6_2	exon	1297502	1298004	1297502	ID=Msa0903870-mRNA-1:exon:543;Parent=Msa0903870-mRNA-1
chr6_2	exon	1298603	1298663	1298603	ID=Msa0903870-mRNA-1:exon:542;Parent=Msa0903870-mRNA-1
chr6_2	exon	1298785	1298960	1298785	ID=Msa0903870-mRNA-1:exon:541;Parent=Msa0903870-mRNA-1
chr6_2	exon	1299045	1299102	1299045	ID=Msa0903870-mRNA-1:exon:540;Parent=Msa0903870-mRNA-1
chr6_2	exon	1301794	1301851	1301794	ID=Msa0903870-mRNA-1:exon:539;Parent=Msa0903870-mRNA-1
chr6_2	exon	1301957	1302028	1301957	ID=Msa0903870-mRNA-1:exon:538;Parent=Msa0903870-mRNA-1
chr6_2	exon	1302134	1302447	1302134	ID=Msa0903870-mRNA-1:exon:537;Parent=Msa0903870-mRNA-1
chr6_2	five_prime_UTR	1302229	1302447	1302229	ID=Msa0903870-mRNA-1:five_prime_utr;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1302134	1302228	1302134	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1301957	1302028	1301957	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1301794	1301851	1301794	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1299045	1299102	1299045	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1298785	1298960	1298785	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1298603	1298663	1298603	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	CDS	1297691	1298004	1297691	ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1
chr6_2	three_prime_UTR	1297502	1297690	1297502	ID=Msa0903870-mRNA-1:three_prime_utr;Parent=Msa0903870-mRNA-1

Gene Sequence

>Msa0903870

ATGTTCCAACCTCGTTTTCTTCCATTGTTACTCTGTTTTTTCTTCTCTGTTTCTTCAATTCGATTACCTGGTTTGGAAGAAGAAAACAAAATCACGCGTGGATCGGTTTTTGGAGCAAAAGTCAAGTTTGATCCGACACGTGTTACTCAGCTCTCGTGGAGTCCTAGGGCTTTTCTGTATAAGAATTTTTTGACTGATGAAGAATGTGATCATCTTATTGAATTGGATGAAATAGTTTCTGGTATTGAAGCACGAATTGCCGCATGGACATTCCTTCCCGTAGAGAATGGTGAGTCTATGCAAGTATTGCACTACATGAACGGCGAGAAATACGAACCACATTTTGATTTCTTCCACGACAAGGCTAATCAACGACTTGGCGGCCATCGTGTTGCAACGGTGCTGATGTATTTGTCTAATGTTGAGAAGGGTGGAGAAACCATTTTTCCTCATGCCGAGGGGAGGTTGTCGCAGCCAAAAGATGAGAGCTGGTCAGAATGTGCTCACAAAGGATATGCAGTAAAACCTCGGAAGGGTGACGCCTTGTTGTTCTTCAGTCTTCATCTAGATGCAACCACAGATTCAAAAAGCTTGCATGGAAGCTGTCCAGTGATTGAAGGTGAGAAGTGGTCAGCAACAAAGTGGATTCATGTTGCCGACTTTGAGAAACCGATACGACAAGCATTGGAGGATGATGGAGAGTGTGTTGATGAGAATGAGAATTGTGCTAGGTGGGCTAAAGTTGGCGAATGTGAGAAAAATCCACGTTATATGGTTGGTAATGGAGGAGTTAAAGGAAAATGTATGAAGAGTTGCAATGTTTGCTCTTCTTAG

Protein sequence

>Msa0903870

MFQPRFLPLLLCFFFSVSSIRLPGLEEENKITRGSVFGAKVKFDPTRVTQLSWSPRAFLYKNFLTDEECDHLIELDEIVSGIEARIAAWTFLPVENGESMQVLHYMNGEKYEPHFDFFHDKANQRLGGHRVATVLMYLSNVEKGGETIFPHAEGRLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLDATTDSKSLHGSCPVIEGEKWSATKWIHVADFEKPIRQALEDDGECVDENENCARWAKVGECEKNPRYMVGNGGVKGKCMKSCNVCSS*