Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903870 | XP_003618430.1 | 83.810 | 315 | 11 | 4 | 1 | 277 | 1 | 313 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903870 | sp|Q8L970|P4H7_ARATH | 56.825 | 315 | 89 | 4 | 6 | 277 | 6 | 316 | 1.18e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa0903870 | 0.800412 | 1.459164e-48 | -8.615850e-47 |
| Msa0068020 | Msa0903870 | 0.809645 | 1.708202e-50 | -8.615850e-47 |
| Msa0610550 | Msa0903870 | 0.801146 | 1.033315e-48 | -8.615850e-47 |
| Msa0693210 | Msa0903870 | 0.804467 | 2.130178e-49 | -8.615850e-47 |
| Msa0177960 | Msa0903870 | 0.801628 | 8.230632e-49 | -8.615850e-47 |
| Msa0190590 | Msa0903870 | 0.801725 | 7.862075e-49 | -8.615850e-47 |
| Msa0217670 | Msa0903870 | 0.802240 | 6.161275e-49 | -8.615850e-47 |
| Msa0385500 | Msa0903870 | 0.823306 | 1.486727e-53 | -8.615850e-47 |
| Msa0257490 | Msa0903870 | 0.817169 | 3.790849e-52 | -8.615850e-47 |
| Msa0280370 | Msa0903870 | 0.813650 | 2.299015e-51 | -8.615850e-47 |
| Msa0296790 | Msa0903870 | 0.815248 | 1.018767e-51 | -8.615850e-47 |
| Msa0870750 | Msa0903870 | 0.923947 | 1.355235e-89 | -8.615850e-47 |
| Msa0903870 | Msa0936480 | 0.911186 | 8.083437e-83 | -8.615850e-47 |
| Msa0903870 | Msa0973420 | 0.924121 | 1.074387e-89 | -8.615850e-47 |
| Msa0903870 | Msa1175350 | 0.804972 | 1.670981e-49 | -8.615850e-47 |
| Msa0903870 | Msa1315890 | 0.811154 | 8.069570e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903870 | MtrunA17_Chr6g0452281 | 83.810 | 315 | 11 | 4 | 1 | 277 | 1 | 313 | 0.0 | 513 |
| Msa0903870 | MtrunA17_Chr2g0286811 | 53.901 | 282 | 86 | 3 | 34 | 275 | 26 | 303 | 6.31e-103 | 302 |
| Msa0903870 | MtrunA17_Chr4g0066531 | 52.768 | 271 | 86 | 3 | 43 | 275 | 32 | 298 | 8.78e-97 | 286 |
| Msa0903870 | MtrunA17_Chr3g0143381 | 44.882 | 254 | 103 | 3 | 6 | 222 | 26 | 279 | 2.13e-70 | 218 |
| Msa0903870 | MtrunA17_Chr5g0406051 | 48.341 | 211 | 73 | 2 | 48 | 222 | 78 | 288 | 4.01e-66 | 207 |
| Msa0903870 | MtrunA17_Chr6g0470551 | 38.411 | 302 | 147 | 6 | 6 | 275 | 3 | 297 | 5.15e-65 | 205 |
| Msa0903870 | MtrunA17_Chr8g0371281 | 45.798 | 238 | 89 | 4 | 21 | 221 | 41 | 275 | 5.78e-65 | 204 |
| Msa0903870 | MtrunA17_Chr8g0371221 | 45.798 | 238 | 90 | 4 | 21 | 221 | 41 | 276 | 5.05e-64 | 202 |
| Msa0903870 | MtrunA17_Chr8g0371251 | 43.277 | 238 | 99 | 2 | 21 | 222 | 41 | 278 | 9.99e-63 | 199 |
| Msa0903870 | MtrunA17_Chr8g0371231 | 53.103 | 145 | 67 | 1 | 76 | 219 | 55 | 199 | 2.59e-51 | 167 |
| Msa0903870 | MtrunA17_Chr3g0143361 | 54.545 | 143 | 60 | 1 | 76 | 218 | 32 | 169 | 2.71e-49 | 161 |
| Msa0903870 | MtrunA17_Chr8g0371241 | 51.034 | 145 | 54 | 2 | 76 | 219 | 31 | 159 | 1.75e-43 | 145 |
| Msa0903870 | MtrunA17_Chr1g0213811 | 40.865 | 208 | 71 | 4 | 51 | 216 | 78 | 275 | 3.31e-43 | 148 |
| Msa0903870 | MtrunA17_Chr4g0053801 | 35.470 | 234 | 108 | 4 | 27 | 222 | 66 | 294 | 8.02e-40 | 140 |
| Msa0903870 | MtrunA17_Chr3g0143371 | 50.794 | 126 | 56 | 2 | 76 | 200 | 32 | 152 | 4.17e-35 | 123 |
| Msa0903870 | MtrunA17_Chr3g0143351 | 46.667 | 150 | 68 | 3 | 76 | 222 | 32 | 172 | 7.76e-35 | 124 |
| Msa0903870 | MtrunA17_Chr5g0401481 | 32.727 | 220 | 91 | 4 | 51 | 216 | 86 | 302 | 4.60e-31 | 117 |
| Msa0903870 | MtrunA17_Chr3g0098671 | 55.738 | 61 | 22 | 2 | 95 | 153 | 31 | 88 | 2.86e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903870 | AT3G28480.1 | 56.825 | 315 | 89 | 4 | 6 | 277 | 6 | 316 | 1.20e-124 | 358 |
| Msa0903870 | AT3G28480.2 | 55.418 | 323 | 89 | 4 | 6 | 277 | 6 | 324 | 1.82e-123 | 355 |
| Msa0903870 | AT3G28490.1 | 58.582 | 268 | 68 | 2 | 44 | 275 | 28 | 288 | 8.90e-112 | 324 |
| Msa0903870 | AT5G18900.1 | 52.015 | 273 | 89 | 3 | 41 | 275 | 30 | 298 | 6.84e-95 | 281 |
| Msa0903870 | AT3G06300.1 | 53.731 | 268 | 80 | 4 | 47 | 275 | 37 | 299 | 9.88e-94 | 279 |
| Msa0903870 | AT4G25600.1 | 45.946 | 259 | 106 | 7 | 36 | 275 | 48 | 291 | 5.99e-72 | 223 |
| Msa0903870 | AT1G20270.1 | 49.038 | 208 | 70 | 2 | 51 | 222 | 79 | 286 | 1.74e-64 | 204 |
| Msa0903870 | AT2G17720.1 | 47.867 | 211 | 74 | 2 | 48 | 222 | 80 | 290 | 1.02e-63 | 202 |
| Msa0903870 | AT4G35810.1 | 49.275 | 207 | 69 | 2 | 51 | 221 | 83 | 289 | 1.62e-63 | 201 |
| Msa0903870 | AT4G35810.2 | 49.275 | 207 | 69 | 2 | 51 | 221 | 83 | 289 | 1.62e-63 | 201 |
| Msa0903870 | AT4G25600.4 | 44.351 | 239 | 100 | 6 | 56 | 275 | 3 | 227 | 4.01e-63 | 198 |
| Msa0903870 | AT4G25600.3 | 44.351 | 239 | 100 | 6 | 56 | 275 | 6 | 230 | 4.08e-63 | 198 |
| Msa0903870 | AT4G25600.2 | 44.351 | 239 | 100 | 6 | 56 | 275 | 15 | 239 | 4.29e-63 | 199 |
| Msa0903870 | AT5G66060.1 | 48.341 | 211 | 73 | 2 | 48 | 222 | 78 | 288 | 1.05e-61 | 197 |
| Msa0903870 | AT2G43080.1 | 39.216 | 204 | 82 | 2 | 51 | 217 | 80 | 278 | 7.37e-42 | 145 |
| Msa0903870 | AT2G23096.1 | 38.806 | 201 | 85 | 4 | 51 | 216 | 71 | 268 | 4.45e-40 | 140 |
| Msa0903870 | AT4G33910.1 | 35.294 | 238 | 111 | 4 | 24 | 223 | 56 | 288 | 2.29e-39 | 139 |
| Msa0903870 | AT4G35820.1 | 40.933 | 193 | 50 | 4 | 51 | 200 | 91 | 262 | 1.61e-37 | 134 |
| Msa0903870 | AT5G66060.2 | 44.444 | 162 | 52 | 3 | 48 | 173 | 78 | 237 | 1.36e-35 | 128 |
| Msa0903870 | AT1G20270.2 | 43.089 | 123 | 35 | 1 | 51 | 138 | 79 | 201 | 6.45e-28 | 107 |
| Msa0903870 | AT1G20270.3 | 43.089 | 123 | 35 | 1 | 51 | 138 | 79 | 201 | 6.45e-28 | 107 |
Find 64 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTAATTAAATGTTAAT+TGG | 0.206561 | 6_2:+1302357 | None:intergenic |
| CTTTAGGATGAAATAGTTTC+TGG | 0.221539 | 6_2:-1299086 | Msa0903870:intron |
| TCTGACCAGCTCTCATCTTT+TGG | 0.243925 | 6_2:+1298626 | None:intergenic |
| GTTGGTAATGGAGGAGTTAA+AGG | 0.311233 | 6_2:-1297728 | Msa0903870:CDS |
| TTCAATTCGATTACCTGGTT+TGG | 0.335287 | 6_2:-1302153 | Msa0903870:CDS |
| ATGTGATCATCTTATTGAAT+TGG | 0.366986 | 6_2:-1301793 | Msa0903870:intron |
| GATTCCCACAGATTTGAGTT+TGG | 0.395465 | 6_2:+1302405 | None:intergenic |
| GAGATTTATTTGTAAAGGAA+AGG | 0.436384 | 6_2:+1297550 | None:intergenic |
| AATAAGAGAGATTAGAGAGA+GGG | 0.438010 | 6_2:+1302305 | None:intergenic |
| TCCTCCAATGCTTGTCGTAT+CGG | 0.438442 | 6_2:+1297833 | None:intergenic |
| TCTTCTTAGAGTGGTTATCA+TGG | 0.439591 | 6_2:-1297677 | Msa0903870:exon |
| AAGGAGAGATTTATTTGTAA+AGG | 0.449994 | 6_2:+1297545 | None:intergenic |
| CCACGTTATATGGTTGGTAA+TGG | 0.471479 | 6_2:-1297740 | Msa0903870:CDS |
| AGACATTTGTTAAATGTGAA+AGG | 0.472931 | 6_2:+1297526 | None:intergenic |
| GTTTCTTCAATTCGATTACC+TGG | 0.477062 | 6_2:-1302158 | Msa0903870:CDS |
| CACTTCTCACCTTCAATCAC+TGG | 0.491510 | 6_2:+1297896 | None:intergenic |
| AGATTTATTTGTAAAGGAAA+GGG | 0.496125 | 6_2:+1297551 | None:intergenic |
| CTCAGCTCTCGTGGAGTCCT+AGG | 0.504470 | 6_2:-1301956 | Msa0903870:intron |
| CGACAAGCATTGGAGGATGA+TGG | 0.516551 | 6_2:-1297827 | Msa0903870:CDS |
| AATGTTTGCTCTTCTTAGAG+TGG | 0.521716 | 6_2:-1297686 | Msa0903870:exon |
| TGTGCTCACAAAGGATATGC+AGG | 0.524271 | 6_2:-1298602 | Msa0903870:intron |
| CGCAGCCAAAAGATGAGAGC+TGG | 0.532075 | 6_2:-1298631 | Msa0903870:CDS |
| TTGTCTAATGTTGAGAAGGG+TGG | 0.535297 | 6_2:-1298810 | Msa0903870:CDS |
| AAATAAGAGAGATTAGAGAG+AGG | 0.547974 | 6_2:+1302304 | None:intergenic |
| ACCGATACGACAAGCATTGG+AGG | 0.549713 | 6_2:-1297834 | Msa0903870:CDS |
| TGTGCTAGGTGGGCTAAAGT+TGG | 0.553043 | 6_2:-1297779 | Msa0903870:CDS |
| ACAATGGAAGAAAACGAGGT+TGG | 0.559292 | 6_2:+1302201 | None:intergenic |
| AAGACAGGAGTTCTCCTCTA+GGG | 0.559597 | 6_2:-1297580 | Msa0903870:three_prime_UTR |
| AACTGAATAGAAATGAAGAC+AGG | 0.561864 | 6_2:-1297595 | Msa0903870:three_prime_UTR |
| GAAACCGATACGACAAGCAT+TGG | 0.562936 | 6_2:-1297837 | Msa0903870:CDS |
| GTCGTTGATTAGCCTTGTCG+TGG | 0.563771 | 6_2:+1298868 | None:intergenic |
| TCGTATCGGTTTCTCAAAGT+CGG | 0.564192 | 6_2:+1297847 | None:intergenic |
| GGAAGCTGTCCAGTGATTGA+AGG | 0.566220 | 6_2:-1297905 | Msa0903870:CDS |
| CGTTATATGGTTGGTAATGG+AGG | 0.570195 | 6_2:-1297737 | Msa0903870:CDS |
| GATTTCAGTAAAACCTCGGA+AGG | 0.570685 | 6_2:-1297990 | Msa0903870:intron |
| CACGTGTTACTCAGCTCTCG+TGG | 0.573617 | 6_2:-1301965 | Msa0903870:CDS |
| AAGGCTAATCAACGACTTGG+CGG | 0.579353 | 6_2:-1298861 | Msa0903870:CDS |
| GAAGACAGGAGTTCTCCTCT+AGG | 0.584321 | 6_2:-1297581 | Msa0903870:three_prime_UTR |
| CTGTGATTTCAGTAAAACCT+CGG | 0.587062 | 6_2:-1297994 | Msa0903870:intron |
| GACAAGGCTAATCAACGACT+TGG | 0.590163 | 6_2:-1298864 | Msa0903870:CDS |
| CAAGTATTGCACTACATGAA+CGG | 0.597351 | 6_2:-1298921 | Msa0903870:CDS |
| TGGCGGCCATCGTGTTGCAA+CGG | 0.600471 | 6_2:-1298844 | Msa0903870:CDS |
| GTATTTGTCTAATGTTGAGA+AGG | 0.600995 | 6_2:-1298814 | Msa0903870:CDS |
| AACAAGGCGTCACCCTTCCG+AGG | 0.602551 | 6_2:+1297977 | None:intergenic |
| AGACGCCAAACTCAAATCTG+TGG | 0.603988 | 6_2:-1302410 | Msa0903870:five_prime_UTR |
| GACGCCAAACTCAAATCTGT+GGG | 0.606114 | 6_2:-1302409 | Msa0903870:five_prime_UTR |
| TATTTGTCTAATGTTGAGAA+GGG | 0.614235 | 6_2:-1298813 | Msa0903870:CDS |
| GAATGAGAATTGTGCTAGGT+GGG | 0.627537 | 6_2:-1297789 | Msa0903870:CDS |
| ATGAGAATGAGAATTGTGCT+AGG | 0.631627 | 6_2:-1297793 | Msa0903870:CDS |
| AGAAGTGGTCAGCAACAAAG+TGG | 0.631807 | 6_2:-1297880 | Msa0903870:CDS |
| CCATTACCAACCATATAACG+TGG | 0.638057 | 6_2:+1297740 | None:intergenic |
| GAAAGTCTTACCTCGGCATG+AGG | 0.646247 | 6_2:+1298774 | None:intergenic |
| TTGAAGCACGAATTGCCGCA+TGG | 0.649902 | 6_2:-1299061 | Msa0903870:CDS |
| TCGTGGAAGAAATCAAAATG+TGG | 0.654542 | 6_2:+1298885 | None:intergenic |
| AGAATGAGAATTGTGCTAGG+TGG | 0.675466 | 6_2:-1297790 | Msa0903870:CDS |
| TGGTCAGAATGTGCTCACAA+AGG | 0.676168 | 6_2:-1298611 | Msa0903870:CDS |
| CAGTGATTGAAGGTGAGAAG+TGG | 0.688855 | 6_2:-1297895 | Msa0903870:CDS |
| AGTAACAATGGAAGAAAACG+AGG | 0.692940 | 6_2:+1302197 | None:intergenic |
| GCATGGACATTCCTTCCCGT+AGG | 0.694487 | 6_2:-1299044 | Msa0903870:intron |
| GAGAGCTGAGTAACACGTGT+CGG | 0.695014 | 6_2:+1301969 | None:intergenic |
| ATTTCAGTAAAACCTCGGAA+GGG | 0.704588 | 6_2:-1297989 | Msa0903870:intron |
| TCAGCACCGTTGCAACACGA+TGG | 0.711185 | 6_2:+1298838 | None:intergenic |
| TACGGGAAGGAATGTCCATG+CGG | 0.724567 | 6_2:+1299046 | None:intergenic |
| ATGAAGACTGAAGAACAACA+AGG | 0.733543 | 6_2:+1297961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTAATTAAATGTTAAT+TGG | + | chr6_2:1297573-1297592 | None:intergenic | 10.0% |
| !! | ATAAAAAATTATAGTAAACA+AGG | - | chr6_2:1300003-1300022 | Msa0903870:intron | 10.0% |
| !! | TAAAAAATTATAGTAAACAA+GGG | - | chr6_2:1300004-1300023 | Msa0903870:intron | 10.0% |
| !!! | AAAATCTTATCTTTTTTTGT+TGG | - | chr6_2:1297873-1297892 | Msa0903870:CDS | 15.0% |
| !!! | AAATCTTATCTTTTTTTGTT+GGG | - | chr6_2:1297874-1297893 | Msa0903870:CDS | 15.0% |
| !!! | TTGATTTTTTTTTTTTGTTG+TGG | - | chr6_2:1298053-1298072 | Msa0903870:intron | 15.0% |
| !!! | GTATTTTTAGTGATTATTAT+TGG | - | chr6_2:1298160-1298179 | Msa0903870:intron | 15.0% |
| !! | TCTGAAAATATGTTTATAAA+CGG | - | chr6_2:1298687-1298706 | Msa0903870:intron | 15.0% |
| !! | AATAAACTGAAAACAATTTA+TGG | + | chr6_2:1301565-1301584 | None:intergenic | 15.0% |
| !!! | AATCTTATCTTTTTTTGTTG+GGG | - | chr6_2:1297875-1297894 | Msa0903870:CDS | 20.0% |
| !!! | GTTTTCAATTTTTTGTTTTC+AGG | - | chr6_2:1297899-1297918 | Msa0903870:CDS | 20.0% |
| !!! | TTAGTGATTATTATTGGTTT+TGG | - | chr6_2:1298166-1298185 | Msa0903870:intron | 20.0% |
| !!! | TCTACTTATAAACACATTTT+CGG | + | chr6_2:1298417-1298436 | None:intergenic | 20.0% |
| !! | CTGAAAATATGTTTATAAAC+GGG | - | chr6_2:1298688-1298707 | Msa0903870:intron | 20.0% |
| !!! | CTGAAAATATTTTTATACGT+GGG | - | chr6_2:1299454-1299473 | Msa0903870:intron | 20.0% |
| !! | TTTAATTGTGGTGTATATAT+AGG | - | chr6_2:1300443-1300462 | Msa0903870:intron | 20.0% |
| !! | TTAATTGTGGTGTATATATA+GGG | - | chr6_2:1300444-1300463 | Msa0903870:intron | 20.0% |
| !! | TACAAATATTTGTAGAGAAA+GGG | + | chr6_2:1300520-1300539 | None:intergenic | 20.0% |
| !! | TTACAAATATTTGTAGAGAA+AGG | + | chr6_2:1300521-1300540 | None:intergenic | 20.0% |
| !! | AAAGATTAAACAAAAGAAAG+AGG | + | chr6_2:1300825-1300844 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTGTTTAATCTTT+AGG | - | chr6_2:1300825-1300844 | Msa0903870:intron | 20.0% |
| !! | ACAAATAGATTAATCAAAAC+AGG | + | chr6_2:1301473-1301492 | None:intergenic | 20.0% |
| !!! | TGTTTATATTTCGAGTTTAT+TGG | + | chr6_2:1301841-1301860 | None:intergenic | 20.0% |
| !! | AGATTTATTTGTAAAGGAAA+GGG | + | chr6_2:1302379-1302398 | None:intergenic | 20.0% |
| ! | AAGAAAAAACAGAGTAACAA+TGG | + | chr6_2:1297745-1297764 | None:intergenic | 25.0% |
| ! | AGAATGAGAATTCAAGAAAT+GGG | + | chr6_2:1297835-1297854 | None:intergenic | 25.0% |
| ! | AAGAATGAGAATTCAAGAAA+TGG | + | chr6_2:1297836-1297855 | None:intergenic | 25.0% |
| ! | AAAAAAGGTTTATACTACCT+AGG | + | chr6_2:1297991-1298010 | None:intergenic | 25.0% |
| ! | TTTGAACAACACAAGAAAAA+AGG | + | chr6_2:1298006-1298025 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTGTTGTTCAAA+AGG | - | chr6_2:1298006-1298025 | Msa0903870:intron | 25.0% |
| !!! | TTTTCTTGTGTTGTTCAAAA+GGG | - | chr6_2:1298007-1298026 | Msa0903870:intron | 25.0% |
| ! | ATGTGATCATCTTATTGAAT+TGG | - | chr6_2:1298134-1298153 | Msa0903870:intron | 25.0% |
| ! | CTAATTCAAACCTATAAAAC+CGG | + | chr6_2:1298461-1298480 | None:intergenic | 25.0% |
| ! | AAAATATGTTTATAAACGGG+AGG | - | chr6_2:1298691-1298710 | Msa0903870:intron | 25.0% |
| !! | CTGCTTAAAAACATATTTTC+AGG | + | chr6_2:1299026-1299045 | None:intergenic | 25.0% |
| !!! | CTGAAAATATGTTTTTAAGC+AGG | - | chr6_2:1299024-1299043 | Msa0903870:intron | 25.0% |
| ! | TCCTTAAAAAAATCTTACAG+TGG | - | chr6_2:1299246-1299265 | Msa0903870:intron | 25.0% |
| !!! | ACCACTGTAAGATTTTTTTA+AGG | + | chr6_2:1299250-1299269 | None:intergenic | 25.0% |
| !! | CCACGTATAAAAATATTTTC+AGG | + | chr6_2:1299456-1299475 | None:intergenic | 25.0% |
| !!! | CCTGAAAATATTTTTATACG+TGG | - | chr6_2:1299453-1299472 | Msa0903870:intron | 25.0% |
| !!! | AAAATATTTTTATACGTGGG+AGG | - | chr6_2:1299457-1299476 | Msa0903870:intron | 25.0% |
| !! | TTTTGTGATATTATAGTCGA+AGG | - | chr6_2:1299553-1299572 | Msa0903870:intron | 25.0% |
| ! | TACATGTCAAAATTCATCAT+AGG | - | chr6_2:1299701-1299720 | Msa0903870:intron | 25.0% |
| !!! | ATTGTTTTTATTCCAACACA+TGG | - | chr6_2:1299775-1299794 | Msa0903870:intron | 25.0% |
| !! | CTTGTTATATGGATAAGTAA+AGG | - | chr6_2:1299800-1299819 | Msa0903870:intron | 25.0% |
| !! | AAATGTGTTAGAAACTTGTT+TGG | - | chr6_2:1299860-1299879 | Msa0903870:intron | 25.0% |
| ! | GATCAATCTCAAAAAAATGT+TGG | + | chr6_2:1299890-1299909 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGAGATTGATCCA+TGG | - | chr6_2:1299892-1299911 | Msa0903870:intron | 25.0% |
| !! | AACACAGATTCATAATGTTT+TGG | + | chr6_2:1300052-1300071 | None:intergenic | 25.0% |
| !!! | TGTAACTTGATAATGATGAA+TGG | + | chr6_2:1300322-1300341 | None:intergenic | 25.0% |
| ! | TCATCATTATCAAGTTACAA+AGG | - | chr6_2:1300323-1300342 | Msa0903870:intron | 25.0% |
| ! | TAGGGTCTATTTGAATATAA+TGG | - | chr6_2:1300462-1300481 | Msa0903870:intron | 25.0% |
| ! | CTGGTAACAATTTAATAAAC+TGG | + | chr6_2:1300615-1300634 | None:intergenic | 25.0% |
| ! | CTTCATAAGAAAGAATTTGT+AGG | + | chr6_2:1300686-1300705 | None:intergenic | 25.0% |
| ! | GTGAAACAAAAAACCTAAAA+CGG | + | chr6_2:1300937-1300956 | None:intergenic | 25.0% |
| ! | TATTTGTCTAATGTTGAGAA+GGG | - | chr6_2:1301114-1301133 | Msa0903870:intron | 25.0% |
| ! | TTCACATGTATTTGATTATC+TGG | - | chr6_2:1301173-1301192 | Msa0903870:intron | 25.0% |
| !!! | AGTAATTTGATTGCTTTTTC+AGG | - | chr6_2:1301264-1301283 | Msa0903870:intron | 25.0% |
| !!! | GTAATTTGATTGCTTTTTCA+GGG | - | chr6_2:1301265-1301284 | Msa0903870:intron | 25.0% |
| !!! | TAATTTGATTGCTTTTTCAG+GGG | - | chr6_2:1301266-1301285 | Msa0903870:intron | 25.0% |
| ! | AAGATATTAGCTCATTTCAA+TGG | - | chr6_2:1301371-1301390 | Msa0903870:intron | 25.0% |
| !!! | AAATACTTTTGAGACTGTTT+AGG | - | chr6_2:1301509-1301528 | Msa0903870:intron | 25.0% |
| ! | AGCTTATTGTTAGATTATGA+GGG | + | chr6_2:1301864-1301883 | None:intergenic | 25.0% |
| ! | AAGCTTATTGTTAGATTATG+AGG | + | chr6_2:1301865-1301884 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTGTCTCATTTTT+TGG | - | chr6_2:1301878-1301897 | Msa0903870:intron | 25.0% |
| ! | GAGATTTATTTGTAAAGGAA+AGG | + | chr6_2:1302380-1302399 | None:intergenic | 25.0% |
| ! | AAGGAGAGATTTATTTGTAA+AGG | + | chr6_2:1302385-1302404 | None:intergenic | 25.0% |
| !! | AGACATTTGTTAAATGTGAA+AGG | + | chr6_2:1302404-1302423 | None:intergenic | 25.0% |
| AATAAGAGAGATTAGAGAGA+GGG | + | chr6_2:1297625-1297644 | None:intergenic | 30.0% | |
| AAATAAGAGAGATTAGAGAG+AGG | + | chr6_2:1297626-1297645 | None:intergenic | 30.0% | |
| ! | ATTATGTTGTGTTGTTATGC+AGG | - | chr6_2:1298076-1298095 | Msa0903870:intron | 30.0% |
| ! | TTATGTTGTGTTGTTATGCA+GGG | - | chr6_2:1298077-1298096 | Msa0903870:intron | 30.0% |
| ! | TTTCTGTATGTGTTTCTGTT+AGG | - | chr6_2:1298202-1298221 | Msa0903870:intron | 30.0% |
| TCGATAACGTGTTTATAAGT+CGG | - | chr6_2:1298308-1298327 | Msa0903870:intron | 30.0% | |
| !! | ACCTTATAAGCTGATTTTGT+AGG | - | chr6_2:1298342-1298361 | Msa0903870:intron | 30.0% |
| !! | CCTTATAAGCTGATTTTGTA+GGG | - | chr6_2:1298343-1298362 | Msa0903870:intron | 30.0% |
| !! | CGGTTTTATAGGTTTGAATT+AGG | - | chr6_2:1298459-1298478 | Msa0903870:intron | 30.0% |
| TATAGGTTTGAATTAGGCTA+TGG | - | chr6_2:1298465-1298484 | Msa0903870:intron | 30.0% | |
| TTGAATTAGGCTATGGTATT+TGG | - | chr6_2:1298472-1298491 | Msa0903870:intron | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr6_2:1298597-1298616 | Msa0903870:intron | 30.0% | |
| AAAATCGGTGTGTAAAGTAA+GGG | + | chr6_2:1298720-1298739 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTTCCTA+GGG | - | chr6_2:1298597-1298616 | Msa0903870:intron | 30.0% | |
| ! | GTGAGATCAGTGTTATTAAA+TGG | + | chr6_2:1299296-1299315 | None:intergenic | 30.0% |
| CCCTCTTATAAACTAATTTC+CGG | + | chr6_2:1299323-1299342 | None:intergenic | 30.0% | |
| ! | CCGGAAATTAGTTTATAAGA+GGG | - | chr6_2:1299320-1299339 | Msa0903870:intron | 30.0% |
| ATATAACAAGAACCATGTGT+TGG | + | chr6_2:1299790-1299809 | None:intergenic | 30.0% | |
| ! | AACACATGGTTCTTGTTATA+TGG | - | chr6_2:1299789-1299808 | Msa0903870:intron | 30.0% |
| ! | GTGTCGTTAAAGATTCAAAA+TGG | + | chr6_2:1299829-1299848 | None:intergenic | 30.0% |
| AACATTATGAATCTGTGTTC+AGG | - | chr6_2:1300053-1300072 | Msa0903870:intron | 30.0% | |
| AACCATTAAGCATGAAGATA+TGG | + | chr6_2:1300097-1300116 | None:intergenic | 30.0% | |
| !!! | TTTTTTAAAGATGACGCCAA+CGG | + | chr6_2:1300285-1300304 | None:intergenic | 30.0% |
| !! | ACTTGATAATGATGAATGGT+TGG | + | chr6_2:1300318-1300337 | None:intergenic | 30.0% |
| AACCTTGATGCATTTAATTG+TGG | - | chr6_2:1300431-1300450 | Msa0903870:intron | 30.0% | |
| ATACCAACACTTCAAATTGA+AGG | - | chr6_2:1300540-1300559 | Msa0903870:intron | 30.0% | |
| CATATGTCAAACAACTGAAT+TGG | + | chr6_2:1300763-1300782 | None:intergenic | 30.0% | |
| !! | CTTTAGGATGAAATAGTTTC+TGG | - | chr6_2:1300841-1300860 | Msa0903870:intron | 30.0% |
| GTATTTGTCTAATGTTGAGA+AGG | - | chr6_2:1301113-1301132 | Msa0903870:intron | 30.0% | |
| TCAAATTACTCATCTAGTCA+TGG | + | chr6_2:1301254-1301273 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTTGTCCAAAC+AGG | - | chr6_2:1301680-1301699 | Msa0903870:intron | 30.0% |
| ! | TTAAGTTGTTTGTCCAAACA+GGG | - | chr6_2:1301681-1301700 | Msa0903870:intron | 30.0% |
| ! | TCAGTAAGCTATTCTGTTTT+TGG | - | chr6_2:1301776-1301795 | Msa0903870:intron | 30.0% |
| !! | CAGTAAGCTATTCTGTTTTT+GGG | - | chr6_2:1301777-1301796 | Msa0903870:intron | 30.0% |
| !!! | AGTAAGCTATTCTGTTTTTG+GGG | - | chr6_2:1301778-1301797 | Msa0903870:intron | 30.0% |
| !!! | TTTGTCTCATTTTTTGGCTT+AGG | - | chr6_2:1301884-1301903 | Msa0903870:intron | 30.0% |
| TGAGAAAAATCCACGTTATA+TGG | - | chr6_2:1302177-1302196 | Msa0903870:CDS | 30.0% | |
| AAAAATCCACGTTATATGGT+TGG | - | chr6_2:1302181-1302200 | Msa0903870:CDS | 30.0% | |
| AACTGAATAGAAATGAAGAC+AGG | - | chr6_2:1302332-1302351 | Msa0903870:five_prime_UTR | 30.0% | |
| !!! | TTAGAGAGAGGGTTTTGTTT+AGG | + | chr6_2:1297614-1297633 | None:intergenic | 35.0% |
| AGTAACAATGGAAGAAAACG+AGG | + | chr6_2:1297733-1297752 | None:intergenic | 35.0% | |
| GTTTCTTCAATTCGATTACC+TGG | - | chr6_2:1297769-1297788 | Msa0903870:CDS | 35.0% | |
| TTCAATTCGATTACCTGGTT+TGG | - | chr6_2:1297774-1297793 | Msa0903870:CDS | 35.0% | |
| ! | TTGTTTTCTTCTTCCAAACC+AGG | + | chr6_2:1297790-1297809 | None:intergenic | 35.0% |
| !!! | CAATTTTTTGTTTTCAGGCG+TGG | - | chr6_2:1297904-1297923 | Msa0903870:CDS | 35.0% |
| ! | GTTGTTCAAAAGGGTTGTTT+TGG | - | chr6_2:1298016-1298035 | Msa0903870:intron | 35.0% |
| ATAACGTGTTTATAAGTCGG+AGG | - | chr6_2:1298311-1298330 | Msa0903870:intron | 35.0% | |
| CAAAATCAGCTTATAAGGTG+AGG | + | chr6_2:1298341-1298360 | None:intergenic | 35.0% | |
| CCCTACAAAATCAGCTTATA+AGG | + | chr6_2:1298346-1298365 | None:intergenic | 35.0% | |
| ! | TGATTTTGTAGGGTTCAGTT+AGG | - | chr6_2:1298353-1298372 | Msa0903870:intron | 35.0% |
| !! | GGTTCAGTTAGGATTTGTTA+TGG | - | chr6_2:1298364-1298383 | Msa0903870:intron | 35.0% |
| ! | AAACACATTTTCGGAACATC+AGG | + | chr6_2:1298408-1298427 | None:intergenic | 35.0% |
| !!! | AATTTTTTGCCTACCAGCAT+TGG | + | chr6_2:1298530-1298549 | None:intergenic | 35.0% |
| CTGTTATTAAATGGCAGTCA+CGG | + | chr6_2:1298654-1298673 | None:intergenic | 35.0% | |
| ! | TGACTGCCATTTAATAACAG+TGG | - | chr6_2:1298654-1298673 | Msa0903870:intron | 35.0% |
| GTGAGACCACTGTTATTAAA+TGG | + | chr6_2:1298663-1298682 | None:intergenic | 35.0% | |
| CAAAATCGGTGTGTAAAGTA+AGG | + | chr6_2:1298721-1298740 | None:intergenic | 35.0% | |
| !!! | ACTTTACACACCGATTTTGT+AGG | - | chr6_2:1298722-1298741 | Msa0903870:intron | 35.0% |
| CAAGCTCAATCCTACAAAAT+CGG | + | chr6_2:1298735-1298754 | None:intergenic | 35.0% | |
| ! | TTGTTTACACAGCAGACTTT+TGG | + | chr6_2:1298880-1298899 | None:intergenic | 35.0% |
| CATTCCTTCACAAATTTCCT+AGG | - | chr6_2:1298596-1298615 | Msa0903870:intron | 35.0% | |
| TTATTAAATGGCAGCCATAG+TGG | + | chr6_2:1298987-1299006 | None:intergenic | 35.0% | |
| ! | GTGAGACCAGTGTTATTAAA+TGG | + | chr6_2:1298999-1299018 | None:intergenic | 35.0% |
| !! | AAAACTGGCTTGTAAGGTAA+GGG | + | chr6_2:1299056-1299075 | None:intergenic | 35.0% |
| TTATTAAATGGCAGCCATGA+CGG | + | chr6_2:1299284-1299303 | None:intergenic | 35.0% | |
| ! | GCCGGAAATTAGTTTATAAG+AGG | - | chr6_2:1299319-1299338 | Msa0903870:intron | 35.0% |
| CTAACTCAAACATGCAAAAC+TGG | + | chr6_2:1299363-1299382 | None:intergenic | 35.0% | |
| !! | CAGTTTTGCATGTTTGAGTT+AGG | - | chr6_2:1299361-1299380 | Msa0903870:intron | 35.0% |
| ACAGAAGCGATTTATAAGGT+TGG | + | chr6_2:1299486-1299505 | None:intergenic | 35.0% | |
| ACCTTATAAATCGCTTCTGT+AGG | - | chr6_2:1299486-1299505 | Msa0903870:intron | 35.0% | |
| CCTTATAAATCGCTTCTGTA+GGG | - | chr6_2:1299487-1299506 | Msa0903870:intron | 35.0% | |
| ATTATAGTCGAAGGATAAGC+TGG | - | chr6_2:1299562-1299581 | Msa0903870:intron | 35.0% | |
| AAACAAATCACTCATCTCCA+TGG | + | chr6_2:1299912-1299931 | None:intergenic | 35.0% | |
| CTCCATATCTTCATGCTTAA+TGG | - | chr6_2:1300092-1300111 | Msa0903870:intron | 35.0% | |
| TCCTATCTAGATTCTTCCTT+TGG | - | chr6_2:1300146-1300165 | Msa0903870:intron | 35.0% | |
| TCCAAAGGAAGAATCTAGAT+AGG | + | chr6_2:1300150-1300169 | None:intergenic | 35.0% | |
| ! | CTACATTTTCACAACTCCAA+AGG | + | chr6_2:1300165-1300184 | None:intergenic | 35.0% |
| TTGGAGTTGTGAAAATGTAG+CGG | - | chr6_2:1300165-1300184 | Msa0903870:intron | 35.0% | |
| AAGATGATGAGGGAAAAAGT+AGG | + | chr6_2:1300215-1300234 | None:intergenic | 35.0% | |
| CCTCATAAACAAGATGATGA+GGG | + | chr6_2:1300225-1300244 | None:intergenic | 35.0% | |
| CACCACAATTAAATGCATCA+AGG | + | chr6_2:1300436-1300455 | None:intergenic | 35.0% | |
| AAAGGGTTATTGTGAAAGCT+GGG | + | chr6_2:1300503-1300522 | None:intergenic | 35.0% | |
| !! | ACTTCAAATTGAAGGCGTTT+CGG | - | chr6_2:1300548-1300567 | Msa0903870:intron | 35.0% |
| AATTTGTAGGTATGAAGCAC+CGG | + | chr6_2:1300673-1300692 | None:intergenic | 35.0% | |
| ! | CAAGTATTGCACTACATGAA+CGG | - | chr6_2:1301006-1301025 | Msa0903870:intron | 35.0% |
| TCGTGGAAGAAATCAAAATG+TGG | + | chr6_2:1301045-1301064 | None:intergenic | 35.0% | |
| !!! | TTTTGATTTCTTCCACGACA+AGG | - | chr6_2:1301047-1301066 | Msa0903870:intron | 35.0% |
| TACATGTGAAAGTCTTACCT+CGG | + | chr6_2:1301163-1301182 | None:intergenic | 35.0% | |
| ! | TTTCTTTTGTTAGCGAGTGT+AGG | + | chr6_2:1301221-1301240 | None:intergenic | 35.0% |
| CTGTGATTTCAGTAAAACCT+CGG | - | chr6_2:1301933-1301952 | Msa0903870:intron | 35.0% | |
| ATTTCAGTAAAACCTCGGAA+GGG | - | chr6_2:1301938-1301957 | Msa0903870:intron | 35.0% | |
| ATGAAGACTGAAGAACAACA+AGG | + | chr6_2:1301969-1301988 | None:intergenic | 35.0% | |
| ! | ATGCAAGCTTTTTGAATCTG+TGG | + | chr6_2:1302002-1302021 | None:intergenic | 35.0% |
| ACAGATTCAAAAAGCTTGCA+TGG | - | chr6_2:1302001-1302020 | Msa0903870:CDS | 35.0% | |
| ATGAGAATGAGAATTGTGCT+AGG | - | chr6_2:1302134-1302153 | Msa0903870:CDS | 35.0% | |
| AATGTTTGCTCTTCTTAGAG+TGG | - | chr6_2:1302241-1302260 | Msa0903870:five_prime_UTR | 35.0% | |
| TCTTCTTAGAGTGGTTATCA+TGG | - | chr6_2:1302250-1302269 | Msa0903870:five_prime_UTR | 35.0% | |
| ! | GATTCCCACAGATTTGAGTT+TGG | + | chr6_2:1297525-1297544 | None:intergenic | 40.0% |
| ACAATGGAAGAAAACGAGGT+TGG | + | chr6_2:1297729-1297748 | None:intergenic | 40.0% | |
| !!! | TTTTGTTTTCAGGCGTGGAT+CGG | - | chr6_2:1297909-1297928 | Msa0903870:CDS | 40.0% |
| !!! | AAGGGTTGTTTTGGTTTTCG+AGG | - | chr6_2:1298025-1298044 | Msa0903870:intron | 40.0% |
| CATGTTCCATATTGAGAGTC+TGG | - | chr6_2:1298267-1298286 | Msa0903870:intron | 40.0% | |
| ! | TTTTCGCCAGACTCTCAATA+TGG | + | chr6_2:1298276-1298295 | None:intergenic | 40.0% |
| GCATTTATCGTCTTACAAGC+CGG | - | chr6_2:1298439-1298458 | Msa0903870:intron | 40.0% | |
| !! | GTCTTACAAGCCGGTTTTAT+AGG | - | chr6_2:1298448-1298467 | Msa0903870:intron | 40.0% |
| TAGGCTATGGTATTTGGTCA+TGG | - | chr6_2:1298478-1298497 | Msa0903870:intron | 40.0% | |
| CTATGGTATTTGGTCATGGT+GGG | - | chr6_2:1298482-1298501 | Msa0903870:intron | 40.0% | |
| GTCCTATAAACAAGCCAATC+CGG | - | chr6_2:1298551-1298570 | Msa0903870:intron | 40.0% | |
| TGAAGGAATGTCCACCATAA+GGG | + | chr6_2:1298586-1298605 | None:intergenic | 40.0% | |
| CCACCATAGGAAATTTGTGA+AGG | + | chr6_2:1298603-1298622 | None:intergenic | 40.0% | |
| CCTTCACAAATTTCCTATGG+TGG | - | chr6_2:1298600-1298619 | Msa0903870:intron | 40.0% | |
| GATCTTAAGATGACCACCAT+AGG | + | chr6_2:1298616-1298635 | None:intergenic | 40.0% | |
| TTATTAAATGGCAGTCACGG+TGG | + | chr6_2:1298651-1298670 | None:intergenic | 40.0% | |
| ! | CGATTTTGTAGGATTGAGCT+TGG | - | chr6_2:1298733-1298752 | Msa0903870:intron | 40.0% |
| TCTTATCAGTTATCACACCC+AGG | + | chr6_2:1298806-1298825 | None:intergenic | 40.0% | |
| TTGTGAAGGAATGTCTACCA+TGG | + | chr6_2:1298925-1298944 | None:intergenic | 40.0% | |
| ! | TGGCTGCCATTTAATAACAC+TGG | - | chr6_2:1298990-1299009 | Msa0903870:intron | 40.0% |
| !! | CAAAACTGGCTTGTAAGGTA+AGG | + | chr6_2:1299057-1299076 | None:intergenic | 40.0% |
| !! | ACCTTACAAGCCAGTTTTGT+AGG | - | chr6_2:1299058-1299077 | Msa0903870:CDS | 40.0% |
| CTAACTCAAGCCTACAAAAC+TGG | + | chr6_2:1299071-1299090 | None:intergenic | 40.0% | |
| !! | CAGTTTTGTAGGCTTGAGTT+AGG | - | chr6_2:1299069-1299088 | Msa0903870:CDS | 40.0% |
| TGCTCCTTATGTTCAGTTCT+GGG | - | chr6_2:1299117-1299136 | Msa0903870:intron | 40.0% | |
| ! | GAAAGTCTCAGTGTTGTTGA+TGG | - | chr6_2:1299146-1299165 | Msa0903870:intron | 40.0% |
| !! | GTGTTGTTGATGGTGGTATA+TGG | - | chr6_2:1299156-1299175 | Msa0903870:intron | 40.0% |
| !! | TTGTTGATGGTGGTATATGG+CGG | - | chr6_2:1299159-1299178 | Msa0903870:intron | 40.0% |
| !! | TGTGTTATGAGGCGGATTTT+TGG | + | chr6_2:1299189-1299208 | None:intergenic | 40.0% |
| TAACACTGATCTCACATTGC+CGG | - | chr6_2:1299301-1299320 | Msa0903870:intron | 40.0% | |
| TCAAACATGCAAAACTGGCT+TGG | + | chr6_2:1299358-1299377 | None:intergenic | 40.0% | |
| ! | TGCTCGAGATTTTCAATCCT+TGG | - | chr6_2:1299409-1299428 | Msa0903870:intron | 40.0% |
| CCCTACAGAAGCGATTTATA+AGG | + | chr6_2:1299490-1299509 | None:intergenic | 40.0% | |
| AGTGAAGTCAGAACTAGTTC+TGG | - | chr6_2:1299629-1299648 | Msa0903870:intron | 40.0% | |
| ! | GTGAAGTCAGAACTAGTTCT+GGG | - | chr6_2:1299630-1299649 | Msa0903870:intron | 40.0% |
| GATGTTTCTCAACAAGCAAC+AGG | - | chr6_2:1299652-1299671 | Msa0903870:intron | 40.0% | |
| ! | CCCTCATCATCTTGTTTATG+AGG | - | chr6_2:1300222-1300241 | Msa0903870:intron | 40.0% |
| GCCTCATAAACAAGATGATG+AGG | + | chr6_2:1300226-1300245 | None:intergenic | 40.0% | |
| GAAAGGGTTATTGTGAAAGC+TGG | + | chr6_2:1300504-1300523 | None:intergenic | 40.0% | |
| ! | ACGCCTTCAATTTGAAGTGT+TGG | + | chr6_2:1300546-1300565 | None:intergenic | 40.0% |
| ACAGACACAAACACTGAACA+AGG | + | chr6_2:1300649-1300668 | None:intergenic | 40.0% | |
| TGGTGTCTACTACTTACCTA+CGG | + | chr6_2:1300902-1300921 | None:intergenic | 40.0% | |
| TAGTAGACACCATCATGCTT+TGG | - | chr6_2:1300910-1300929 | Msa0903870:intron | 40.0% | |
| TAAAACGGACCAAAGCATGA+TGG | + | chr6_2:1300922-1300941 | None:intergenic | 40.0% | |
| ! | ATCATGCTTTGGTCCGTTTT+AGG | - | chr6_2:1300921-1300940 | Msa0903870:intron | 40.0% |
| AGCTCTTATCCATCAGAGAA+TGG | - | chr6_2:1300973-1300992 | Msa0903870:intron | 40.0% | |
| ATAGACTCACCATTCTCTGA+TGG | + | chr6_2:1300985-1301004 | None:intergenic | 40.0% | |
| TTGTCTAATGTTGAGAAGGG+TGG | - | chr6_2:1301117-1301136 | Msa0903870:intron | 40.0% | |
| !!! | TTTGATTGCTTTTTCAGGGG+AGG | - | chr6_2:1301269-1301288 | Msa0903870:intron | 40.0% |
| AGACTGTTTAGGAGAGCTTA+TGG | - | chr6_2:1301520-1301539 | Msa0903870:intron | 40.0% | |
| ATGAAAATGCACACCCTGTT+TGG | + | chr6_2:1301697-1301716 | None:intergenic | 40.0% | |
| !! | TTTTTGGGGACGAATGAGAT+TGG | - | chr6_2:1301792-1301811 | Msa0903870:intron | 40.0% |
| !! | TTTTGGGGACGAATGAGATT+GGG | - | chr6_2:1301793-1301812 | Msa0903870:intron | 40.0% |
| GATTTCAGTAAAACCTCGGA+AGG | - | chr6_2:1301937-1301956 | Msa0903870:intron | 40.0% | |
| !! | TCGTATCGGTTTCTCAAAGT+CGG | + | chr6_2:1302083-1302102 | None:intergenic | 40.0% |
| AGAATGAGAATTGTGCTAGG+TGG | - | chr6_2:1302137-1302156 | Msa0903870:CDS | 40.0% | |
| GAATGAGAATTGTGCTAGGT+GGG | - | chr6_2:1302138-1302157 | Msa0903870:CDS | 40.0% | |
| CCATTACCAACCATATAACG+TGG | + | chr6_2:1302190-1302209 | None:intergenic | 40.0% | |
| !! | CCACGTTATATGGTTGGTAA+TGG | - | chr6_2:1302187-1302206 | Msa0903870:CDS | 40.0% |
| !! | CGTTATATGGTTGGTAATGG+AGG | - | chr6_2:1302190-1302209 | Msa0903870:CDS | 40.0% |
| !! | GTTGGTAATGGAGGAGTTAA+AGG | - | chr6_2:1302199-1302218 | Msa0903870:CDS | 40.0% |
| AGACGCCAAACTCAAATCTG+TGG | - | chr6_2:1297517-1297536 | Msa0903870:three_prime_UTR | 45.0% | |
| GACGCCAAACTCAAATCTGT+GGG | - | chr6_2:1297518-1297537 | Msa0903870:three_prime_UTR | 45.0% | |
| GCTATGGTATTTGGTCATGG+TGG | - | chr6_2:1298481-1298500 | Msa0903870:intron | 45.0% | |
| GTGAAGGAATGTCCACCATA+AGG | + | chr6_2:1298587-1298606 | None:intergenic | 45.0% | |
| GCTGTGTAAACAACCCATTG+CGG | - | chr6_2:1298887-1298906 | Msa0903870:CDS | 45.0% | |
| CTGCCCTAGGAAATTTGTGA+AGG | + | chr6_2:1298939-1298958 | None:intergenic | 45.0% | |
| !!! | GATTTTAAGACGACTGCCCT+AGG | + | chr6_2:1298952-1298971 | None:intergenic | 45.0% |
| !! | GCCTACAAAACTGGCTTGTA+AGG | + | chr6_2:1299062-1299081 | None:intergenic | 45.0% |
| ! | ACATAAGGAGCACGACATGA+GGG | + | chr6_2:1299109-1299128 | None:intergenic | 45.0% |
| ! | AACATAAGGAGCACGACATG+AGG | + | chr6_2:1299110-1299129 | None:intergenic | 45.0% |
| GTGCTCCTTATGTTCAGTTC+TGG | - | chr6_2:1299116-1299135 | Msa0903870:intron | 45.0% | |
| CACACCCAGAACTGAACATA+AGG | + | chr6_2:1299124-1299143 | None:intergenic | 45.0% | |
| ! | AGTCTCAGTGTTGTTGATGG+TGG | - | chr6_2:1299149-1299168 | Msa0903870:intron | 45.0% |
| GGTTGTCTTAAGATCCGTCA+TGG | - | chr6_2:1299267-1299286 | Msa0903870:intron | 45.0% | |
| !! | ATGCAAAACTGGCTTGGTGA+GGG | + | chr6_2:1299352-1299371 | None:intergenic | 45.0% |
| GTAAGACTCTCAACACACCA+AGG | + | chr6_2:1299429-1299448 | None:intergenic | 45.0% | |
| CGCTTCTGTAGGGTTGAATT+AGG | - | chr6_2:1299497-1299516 | Msa0903870:intron | 45.0% | |
| GGATAAGCTGGAGAAGTCTA+TGG | - | chr6_2:1299574-1299593 | Msa0903870:intron | 45.0% | |
| TAAGCTGGAGAAGTCTATGG+TGG | - | chr6_2:1299577-1299596 | Msa0903870:intron | 45.0% | |
| !! | ATGGTGGCGGATAATGAATC+TGG | - | chr6_2:1299593-1299612 | Msa0903870:intron | 45.0% |
| !!! | CTTTATTTTCTCAGCGCCGT+TGG | - | chr6_2:1300266-1300285 | Msa0903870:intron | 45.0% |
| AACACTGAACAAGGACACGT+CGG | + | chr6_2:1300640-1300659 | None:intergenic | 45.0% | |
| TTCAGTGTTTGTGTCTGTGC+CGG | - | chr6_2:1300651-1300670 | Msa0903870:intron | 45.0% | |
| TCTACTACTTACCTACGGGA+AGG | + | chr6_2:1300897-1300916 | None:intergenic | 45.0% | |
| GGTGTCTACTACTTACCTAC+GGG | + | chr6_2:1300901-1300920 | None:intergenic | 45.0% | |
| GACAAGGCTAATCAACGACT+TGG | - | chr6_2:1301063-1301082 | Msa0903870:intron | 45.0% | |
| ! | AAGGCTAATCAACGACTTGG+CGG | - | chr6_2:1301066-1301085 | Msa0903870:intron | 45.0% |
| !! | AACCATTTTTCCTCATGCCG+AGG | - | chr6_2:1301143-1301162 | Msa0903870:intron | 45.0% |
| TACCTCGGCATGAGGAAAAA+TGG | + | chr6_2:1301148-1301167 | None:intergenic | 45.0% | |
| ! | TCTGACCAGCTCTCATCTTT+TGG | + | chr6_2:1301304-1301323 | None:intergenic | 45.0% |
| TGGTCAGAATGTGCTCACAA+AGG | - | chr6_2:1301316-1301335 | Msa0903870:intron | 45.0% | |
| TGTGCTCACAAAGGATATGC+AGG | - | chr6_2:1301325-1301344 | Msa0903870:intron | 45.0% | |
| CACTTCTCACCTTCAATCAC+TGG | + | chr6_2:1302034-1302053 | None:intergenic | 45.0% | |
| CAGTGATTGAAGGTGAGAAG+TGG | - | chr6_2:1302032-1302051 | Msa0903870:intron | 45.0% | |
| AGAAGTGGTCAGCAACAAAG+TGG | - | chr6_2:1302047-1302066 | Msa0903870:intron | 45.0% | |
| GAAACCGATACGACAAGCAT+TGG | - | chr6_2:1302090-1302109 | Msa0903870:intron | 45.0% | |
| TCCTCCAATGCTTGTCGTAT+CGG | + | chr6_2:1302097-1302116 | None:intergenic | 45.0% | |
| AAGACAGGAGTTCTCCTCTA+GGG | - | chr6_2:1302347-1302366 | Msa0903870:five_prime_UTR | 45.0% | |
| GGAAAGGGTAAAAACCCTAG+AGG | + | chr6_2:1302364-1302383 | None:intergenic | 45.0% | |
| !!! | TTACTATAATTTTTTATATT+GGG | + | chr6_2:1300000-1300019 | None:intergenic | 5.0% |
| !!! | TTTACTATAATTTTTTATAT+TGG | + | chr6_2:1300001-1300020 | None:intergenic | 5.0% |
| !! | TTCAGGCGTGGATCGGTTTT+TGG | - | chr6_2:1297916-1297935 | Msa0903870:CDS | 50.0% |
| GAGAGCTGAGTAACACGTGT+CGG | + | chr6_2:1297961-1297980 | None:intergenic | 50.0% | |
| ! | CATCAGGAGCACAACATGAG+CGG | + | chr6_2:1298392-1298411 | None:intergenic | 50.0% |
| TCACACAGTGTTGCCAATGC+TGG | - | chr6_2:1298514-1298533 | Msa0903870:intron | 50.0% | |
| ACAGTGTTGCCAATGCTGGT+AGG | - | chr6_2:1298518-1298537 | Msa0903870:intron | 50.0% | |
| !! | GGCCGGATTGGCTTGTTTAT+AGG | + | chr6_2:1298556-1298575 | None:intergenic | 50.0% |
| AAACAAGCCAATCCGGCCTA+TGG | - | chr6_2:1298558-1298577 | Msa0903870:intron | 50.0% | |
| AAATGGCAGTCACGGTGGAA+TGG | + | chr6_2:1298646-1298665 | None:intergenic | 50.0% | |
| ! | TCAGGACAGGAGTGCAACAA+GGG | + | chr6_2:1298775-1298794 | None:intergenic | 50.0% |
| ! | ATCAGGACAGGAGTGCAACA+AGG | + | chr6_2:1298776-1298795 | None:intergenic | 50.0% |
| CTGTCCTGATGTTCAGTCCT+GGG | - | chr6_2:1298786-1298805 | Msa0903870:CDS | 50.0% | |
| GAGAGTCTCACACAGTGTTG+TGG | - | chr6_2:1298834-1298853 | Msa0903870:CDS | 50.0% | |
| AGTCTCACACAGTGTTGTGG+AGG | - | chr6_2:1298837-1298856 | Msa0903870:CDS | 50.0% | |
| GTCTCACACAGTGTTGTGGA+GGG | - | chr6_2:1298838-1298857 | Msa0903870:CDS | 50.0% | |
| GTGTTGTGGAGGGTGGAATA+TGG | - | chr6_2:1298848-1298867 | Msa0903870:CDS | 50.0% | |
| TGGAGGGTGGAATATGGTGA+AGG | - | chr6_2:1298854-1298873 | Msa0903870:CDS | 50.0% | |
| GTCTACCATGGCAGTGACAT+AGG | + | chr6_2:1298913-1298932 | None:intergenic | 50.0% | |
| ! | CATAAGGAGCACGACATGAG+GGG | + | chr6_2:1299108-1299127 | None:intergenic | 50.0% |
| !! | TGATGGTGGTATATGGCGGA+AGG | - | chr6_2:1299163-1299182 | Msa0903870:intron | 50.0% |
| !! | CATGCAAAACTGGCTTGGTG+AGG | + | chr6_2:1299353-1299372 | None:intergenic | 50.0% |
| GGGTTATTGTGAAAGCTGGG+AGG | + | chr6_2:1300500-1300519 | None:intergenic | 50.0% | |
| TTGAAGCACGAATTGCCGCA+TGG | - | chr6_2:1300866-1300885 | Msa0903870:intron | 50.0% | |
| TACGGGAAGGAATGTCCATG+CGG | + | chr6_2:1300884-1300903 | None:intergenic | 50.0% | |
| !! | GTCGTTGATTAGCCTTGTCG+TGG | + | chr6_2:1301062-1301081 | None:intergenic | 50.0% |
| GAAAGTCTTACCTCGGCATG+AGG | + | chr6_2:1301156-1301175 | None:intergenic | 50.0% | |
| !! | GTGTAGGAGTGTTCGTCATG+TGG | + | chr6_2:1301205-1301224 | None:intergenic | 50.0% |
| ATCTCTTGCTTCCACCTGCA+CGG | - | chr6_2:1301446-1301465 | Msa0903870:intron | 50.0% | |
| TAATCAAAACAGGCCCGTGC+AGG | + | chr6_2:1301463-1301482 | None:intergenic | 50.0% | |
| GGAAGCTGTCCAGTGATTGA+AGG | - | chr6_2:1302022-1302041 | Msa0903870:intron | 50.0% | |
| !! | ACCGATACGACAAGCATTGG+AGG | - | chr6_2:1302093-1302112 | Msa0903870:intron | 50.0% |
| !! | CGACAAGCATTGGAGGATGA+TGG | - | chr6_2:1302100-1302119 | Msa0903870:intron | 50.0% |
| !! | TGTGCTAGGTGGGCTAAAGT+TGG | - | chr6_2:1302148-1302167 | Msa0903870:CDS | 50.0% |
| GAAGACAGGAGTTCTCCTCT+AGG | - | chr6_2:1302346-1302365 | Msa0903870:five_prime_UTR | 50.0% | |
| ! | CACGTGTTACTCAGCTCTCG+TGG | - | chr6_2:1297962-1297981 | Msa0903870:CDS | 55.0% |
| CCAGGACTGAACATCAGGAC+AGG | + | chr6_2:1298788-1298807 | None:intergenic | 55.0% | |
| CCTGTCCTGATGTTCAGTCC+TGG | - | chr6_2:1298785-1298804 | Msa0903870:CDS | 55.0% | |
| CACACCCAGGACTGAACATC+AGG | + | chr6_2:1298793-1298812 | None:intergenic | 55.0% | |
| TCACACAGTGTTGTGGAGGG+TGG | - | chr6_2:1298841-1298860 | Msa0903870:CDS | 55.0% | |
| GCAGTGACATAGGCCGCAAT+GGG | + | chr6_2:1298903-1298922 | None:intergenic | 55.0% | |
| TCCGCCATGCTGTTCCACTA+TGG | - | chr6_2:1298970-1298989 | Msa0903870:intron | 55.0% | |
| ! | GCCATAGTGGAACAGCATGG+CGG | + | chr6_2:1298974-1298993 | None:intergenic | 55.0% |
| ! | GCAGCCATAGTGGAACAGCA+TGG | + | chr6_2:1298977-1298996 | None:intergenic | 55.0% |
| CAGTGGCGTGTGTTATGAGG+CGG | + | chr6_2:1299197-1299216 | None:intergenic | 55.0% | |
| CTGCAGTGGCGTGTGTTATG+AGG | + | chr6_2:1299200-1299219 | None:intergenic | 55.0% | |
| GCTGGAGAAGTCTATGGTGG+CGG | - | chr6_2:1299580-1299599 | Msa0903870:intron | 55.0% | |
| TCACACGCGTCAGTGTCATG+CGG | + | chr6_2:1300577-1300596 | None:intergenic | 55.0% | |
| GCATGGACATTCCTTCCCGT+AGG | - | chr6_2:1300883-1300902 | Msa0903870:intron | 55.0% | |
| TCAGCACCGTTGCAACACGA+TGG | + | chr6_2:1301092-1301111 | None:intergenic | 55.0% | |
| CGCAGCCAAAAGATGAGAGC+TGG | - | chr6_2:1301296-1301315 | Msa0903870:intron | 55.0% | |
| TCTCTTGCTTCCACCTGCAC+GGG | - | chr6_2:1301447-1301466 | Msa0903870:intron | 55.0% | |
| CTCAGCTCTCGTGGAGTCCT+AGG | - | chr6_2:1297971-1297990 | Msa0903870:CDS | 60.0% | |
| !! | ACCATAAGGGCGCCATAGGC+CGG | + | chr6_2:1298573-1298592 | None:intergenic | 60.0% |
| !! | GTCCACCATAAGGGCGCCAT+AGG | + | chr6_2:1298577-1298596 | None:intergenic | 60.0% |
| ! | GGACAGGAGTGCAACAAGGG+TGG | + | chr6_2:1298772-1298791 | None:intergenic | 60.0% |
| GGCAGTGACATAGGCCGCAA+TGG | + | chr6_2:1298904-1298923 | None:intergenic | 60.0% | |
| TGCGGCCTATGTCACTGCCA+TGG | - | chr6_2:1298905-1298924 | Msa0903870:CDS | 60.0% | |
| CACACGCCACTGCAGCCTTA+TGG | - | chr6_2:1299205-1299224 | Msa0903870:intron | 60.0% | |
| ACAGCGCCATAAGGCTGCAG+TGG | + | chr6_2:1299214-1299233 | None:intergenic | 60.0% | |
| ! | GCAGCCTTATGGCGCTGTCA+TGG | - | chr6_2:1299216-1299235 | Msa0903870:intron | 60.0% |
| GCCTTATGGCGCTGTCATGG+CGG | - | chr6_2:1299219-1299238 | Msa0903870:intron | 60.0% | |
| TCCGCCATGACAGCGCCATA+AGG | + | chr6_2:1299223-1299242 | None:intergenic | 60.0% | |
| GAACAAGGACACGTCGGCAC+TGG | + | chr6_2:1300634-1300653 | None:intergenic | 60.0% | |
| TGGCGGCCATCGTGTTGCAA+CGG | - | chr6_2:1301083-1301102 | Msa0903870:intron | 60.0% | |
| TCAAAACAGGCCCGTGCAGG+TGG | + | chr6_2:1301460-1301479 | None:intergenic | 60.0% | |
| ! | AACAAGGCGTCACCCTTCCG+AGG | + | chr6_2:1301953-1301972 | None:intergenic | 60.0% |
| !! | AAGGGCGCCATAGGCCGGAT+TGG | + | chr6_2:1298568-1298587 | None:intergenic | 65.0% |
| TCCGGCCTATGGCGCCCTTA+TGG | - | chr6_2:1298569-1298588 | Msa0903870:intron | 65.0% | |
| GGCCTATGGCGCCCTTATGG+TGG | - | chr6_2:1298572-1298591 | Msa0903870:intron | 65.0% | |
| GCAGTCACGGTGGAATGGCG+TGG | + | chr6_2:1298641-1298660 | None:intergenic | 65.0% | |
| GCACGACATGAGGGGCTCGA+TGG | + | chr6_2:1299100-1299119 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 1297502 | 1302447 | 1297502 | ID=Msa0903870;Name=Msa0903870 |
| chr6_2 | mRNA | 1297502 | 1302447 | 1297502 | ID=Msa0903870-mRNA-1;Parent=Msa0903870;Name=Msa0903870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=219|0.83|1|1|1|1|7|189|277 |
| chr6_2 | exon | 1297502 | 1298004 | 1297502 | ID=Msa0903870-mRNA-1:exon:543;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1298603 | 1298663 | 1298603 | ID=Msa0903870-mRNA-1:exon:542;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1298785 | 1298960 | 1298785 | ID=Msa0903870-mRNA-1:exon:541;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1299045 | 1299102 | 1299045 | ID=Msa0903870-mRNA-1:exon:540;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1301794 | 1301851 | 1301794 | ID=Msa0903870-mRNA-1:exon:539;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1301957 | 1302028 | 1301957 | ID=Msa0903870-mRNA-1:exon:538;Parent=Msa0903870-mRNA-1 |
| chr6_2 | exon | 1302134 | 1302447 | 1302134 | ID=Msa0903870-mRNA-1:exon:537;Parent=Msa0903870-mRNA-1 |
| chr6_2 | five_prime_UTR | 1302229 | 1302447 | 1302229 | ID=Msa0903870-mRNA-1:five_prime_utr;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1302134 | 1302228 | 1302134 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1301957 | 1302028 | 1301957 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1301794 | 1301851 | 1301794 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1299045 | 1299102 | 1299045 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1298785 | 1298960 | 1298785 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1298603 | 1298663 | 1298603 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | CDS | 1297691 | 1298004 | 1297691 | ID=Msa0903870-mRNA-1:cds;Parent=Msa0903870-mRNA-1 |
| chr6_2 | three_prime_UTR | 1297502 | 1297690 | 1297502 | ID=Msa0903870-mRNA-1:three_prime_utr;Parent=Msa0903870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
