AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 156 sgRNAs with CRISPR-Local

Find 546 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCACGATGGAACGTTTC+TGG 0.171901 1_4:-65324404 Msa0177960:three_prime_UTR
GTCTTTGTTTGTCTTATTAT+AGG 0.217286 1_4:-65325519 Msa0177960:three_prime_UTR
ATTCAAAATTAATATTAAAA+AGG 0.227965 1_4:+65318683 None:intergenic
CTGTTTATTTCCTTCTATAA+GGG 0.277716 1_4:-65325594 Msa0177960:three_prime_UTR
GACTTCCTTATGTCGTTTAA+TGG 0.278873 1_4:-65324133 Msa0177960:three_prime_UTR
TTTCTCTGGAGGATCCTTAA+TGG 0.279006 1_4:-65324762 Msa0177960:three_prime_UTR
ATGATGGAGCTGTGAGATTA+TGG 0.280439 1_4:-65319092 Msa0177960:three_prime_UTR
ACTTCAACTATTGCTCTTAC+TGG 0.290120 1_4:-65321050 Msa0177960:three_prime_UTR
ACAGATTCTGTATCGAGTTT+AGG 0.294590 1_4:-65324430 Msa0177960:three_prime_UTR
ACGATGCAACCTTGAGAATA+TGG 0.299157 1_4:-65323955 Msa0177960:three_prime_UTR
TTGATGGAACTGTTAAAATC+TGG 0.307851 1_4:-65324369 Msa0177960:three_prime_UTR
ACTGTTTATTTCCTTCTATA+AGG 0.311282 1_4:-65325595 Msa0177960:three_prime_UTR
TTGTTTGATTGCATATGATA+TGG 0.321150 1_4:-65318912 Msa0177960:three_prime_UTR
TCATCATCACTATGATGATT+TGG 0.328094 1_4:+65325444 None:intergenic
AACTGTATGACAGTGGTTCC+TGG 0.340668 1_4:-65319612 Msa0177960:intron
GAATGGGCTTCCCAGCTTAA+TGG 0.341217 1_4:-65324738 Msa0177960:intron
GGGAAGCCCATTCTCCATTA+AGG 0.345840 1_4:+65324748 None:intergenic
GGAGAGCCGCCAGGAGGATC+AGG 0.348540 1_4:+65325294 None:intergenic
CAAGCATGTATATGTCCTTT+AGG 0.349274 1_4:-65318849 Msa0177960:three_prime_UTR
GATGGTGATGGTGGTGGTGG+TGG 0.352453 1_4:-65325161 Msa0177960:three_prime_UTR
ATTATCTTGCCCCTTATAGA+AGG 0.354025 1_4:+65325584 None:intergenic
AGAGGAAATGTCCTCATTGC+TGG 0.358059 1_4:-65324199 Msa0177960:three_prime_UTR
TCTGTGAATTAAGTGGAATT+TGG 0.367696 1_4:+65325691 None:intergenic
GGTGATGGTGATGGTGGTGG+TGG 0.377763 1_4:-65325164 Msa0177960:three_prime_UTR
AATCTGAAAGGCACGTTAGA+TGG 0.390124 1_4:-65324334 Msa0177960:three_prime_UTR
GTTAAAATCTGGGATGCGTC+TGG 0.391279 1_4:-65324358 Msa0177960:three_prime_UTR
GCATGGATAAAATGACCATC+TGG 0.392161 1_4:-65319576 Msa0177960:three_prime_UTR
TGCCTCATCTGTTGGGCTGC+AGG 0.397890 1_4:+65324818 None:intergenic
GATGGTGATGGTGATGGTGG+TGG 0.401482 1_4:-65325167 Msa0177960:three_prime_UTR
CCTCATGCTCACAAATGCTT+CGG 0.405559 1_4:+65319533 None:intergenic
GGAGGATCAGGGCCACCATC+TGG 0.408902 1_4:+65325306 None:intergenic
GCCACAAGTGCCTCATCTGT+TGG 0.411659 1_4:+65324810 None:intergenic
GAAGGAAATAAACAGTAAAC+TGG 0.413205 1_4:+65325602 None:intergenic
AACAATATATACCATTAAGC+TGG 0.414279 1_4:+65324727 None:intergenic
CTCATGCTCACAAATGCTTC+GGG 0.414517 1_4:+65319534 None:intergenic
AGTGGTTCCTGGGCTGCAAT+TGG 0.415085 1_4:-65319601 Msa0177960:three_prime_UTR
GCTCTTACTGGTTCTGTGGA+TGG 0.419290 1_4:-65321038 Msa0177960:three_prime_UTR
GATGAGGCACTTGTGGCAAC+AGG 0.424253 1_4:-65324804 Msa0177960:three_prime_UTR
CCACCATCTGGATGGTCATC+AGG 0.425496 1_4:+65325318 None:intergenic
CCACAAGTGCCTCATCTGTT+GGG 0.429128 1_4:+65324811 None:intergenic
TGTTTGATTGCATATGATAT+GGG 0.430437 1_4:-65318911 Msa0177960:three_prime_UTR
TGGTTCAGCTTTGTAGAAGT+TGG 0.432550 1_4:+65325622 None:intergenic
CGACGGCGGCGGCTGCTGTA+TGG 0.432845 1_4:+65325825 None:intergenic
CCTGGCGGCTCTCCCGATCC+AGG 0.435267 1_4:-65325285 Msa0177960:intron
CTCACAAATGCTTCGGGCTA+AGG 0.436027 1_4:+65319540 None:intergenic
GGTTCCTGGGCTGCAATTGG+AGG 0.441360 1_4:-65319598 Msa0177960:three_prime_UTR
GAATGTGTCAGAACATTTAG+AGG 0.443558 1_4:-65319054 Msa0177960:three_prime_UTR
GGATGGTCATCAGGTGCATC+AGG 0.450048 1_4:+65325327 None:intergenic
GGAGGATCCTTAATGGAGAA+TGG 0.450325 1_4:-65324755 Msa0177960:three_prime_UTR
CTATGTAGGCCACCTGGATC+GGG 0.450861 1_4:+65325273 None:intergenic
GATGGTGATGGTGATGGTGA+TGG 0.452355 1_4:-65325173 Msa0177960:three_prime_UTR
TGTTCAATCCACTGAATGAA+TGG 0.457960 1_4:+65325851 None:intergenic
GGCACATCGTATGTGGCTAC+TGG 0.459735 1_4:-65319120 Msa0177960:three_prime_UTR
GCTATGTAGGCCACCTGGAT+CGG 0.460020 1_4:+65325272 None:intergenic
TGCTAAACATGTTAATCCCT+CGG 0.466251 1_4:+65321082 None:intergenic
CCGCCGTCGTCTCCATTCTC+AGG 0.468798 1_4:-65325811 Msa0177960:intron
TTGTATTGCTTAAAGTATCA+AGG 0.475310 1_4:+65325475 None:intergenic
GATGGTGGCCCTGATCCTCC+TGG 0.475492 1_4:-65325303 Msa0177960:three_prime_UTR
TCAAGTTCCATTGAGTGTGT+TGG 0.479203 1_4:-65320194 Msa0177960:three_prime_UTR
TGATGGAGCTGTGAGATTAT+GGG 0.479339 1_4:-65319091 Msa0177960:three_prime_UTR
TGCGAATCCAACACACTCAA+TGG 0.480617 1_4:+65320187 None:intergenic
GGTGATGGTGATGGTGATGG+TGG 0.481615 1_4:-65325170 Msa0177960:three_prime_UTR
GAGGATCCTTAATGGAGAAT+GGG 0.481827 1_4:-65324754 Msa0177960:three_prime_UTR
CATCGTCAGAGGGAACTTCA+TGG 0.482786 1_4:+65325358 None:intergenic
TGATGGAACTGTTAAAATCT+GGG 0.483493 1_4:-65324368 Msa0177960:three_prime_UTR
CGTGACCATTAAACGACATA+AGG 0.485564 1_4:+65324128 None:intergenic
CACATACGATGTGCCAAGCC+AGG 0.485853 1_4:+65319128 None:intergenic
GGTGGTGGTGGTAATGGTGG+TGG 0.491312 1_4:-65325140 Msa0177960:three_prime_UTR
CATGCCTCCAATTGCAGCCC+AGG 0.491862 1_4:+65319594 None:intergenic
CCTGGATCGGGAGAGCCGCC+AGG 0.491870 1_4:+65325285 None:intergenic
GATGGAACGTTTCTGGCATC+AGG 0.495719 1_4:-65324397 Msa0177960:three_prime_UTR
AGGAAGAAGTTCATCGTCAG+AGG 0.495964 1_4:+65325347 None:intergenic
CGGAGGTTAATATTTGCCAT+TGG 0.497479 1_4:+65325901 None:intergenic
GATTCTGTGCATACATTCAC+TGG 0.498391 1_4:-65325107 Msa0177960:three_prime_UTR
AAGAGTGTCTGTGAATTAAG+TGG 0.502002 1_4:+65325684 None:intergenic
GAAGAGAACGCACCTGAGAA+TGG 0.503141 1_4:+65325799 None:intergenic
CTGAAAATCCATTCATTCAG+TGG 0.503142 1_4:-65325859 Msa0177960:CDS
CATAACATAAAACAACAATC+TGG 0.505603 1_4:+65318802 None:intergenic
TATTGCTCTTACTGGTTCTG+TGG 0.506596 1_4:-65321042 Msa0177960:three_prime_UTR
GTGATGACGTAGGATTTCTC+TGG 0.509352 1_4:-65324776 Msa0177960:three_prime_UTR
AGGAACGCCCGCTGTCCTAA+AGG 0.509497 1_4:+65318834 None:intergenic
CCCAACAGATGAGGCACTTG+TGG 0.512260 1_4:-65324811 Msa0177960:three_prime_UTR
AATCCTCCTCAGTGTGGATG+TGG 0.512568 1_4:-65324168 Msa0177960:three_prime_UTR
GTTAATCCCTCGGTATGGTA+TGG 0.513418 1_4:+65321092 None:intergenic
GTTAAATCTTACAGTGGCTC+AGG 0.519678 1_4:-65324231 Msa0177960:intron
GCAATGAGGACATTTCCTCT+TGG 0.527044 1_4:+65324202 None:intergenic
CATATTGTGAATATCACTAC+AGG 0.527149 1_4:-65321008 Msa0177960:three_prime_UTR
CTGGCTTGGCACATCGTATG+TGG 0.530171 1_4:-65319127 Msa0177960:three_prime_UTR
CTGGGCTGCAATTGGAGGCA+TGG 0.532320 1_4:-65319593 Msa0177960:three_prime_UTR
TGTTTATTTCCTTCTATAAG+GGG 0.535426 1_4:-65325593 Msa0177960:three_prime_UTR
AGATTATGGGACAGTCGATC+TGG 0.536579 1_4:-65319078 Msa0177960:three_prime_UTR
CAGCTTTGTAGAAGTTGGAA+AGG 0.541395 1_4:+65325627 None:intergenic
TTAAATATCGCAGATGGTGA+TGG 0.545678 1_4:-65325191 Msa0177960:intron
GCACTTGTGGCAACAGGAGC+TGG 0.547872 1_4:-65324798 Msa0177960:three_prime_UTR
GAGAATGGAGACGACGGCGG+CGG 0.547883 1_4:+65325814 None:intergenic
ACAATATATACCATTAAGCT+GGG 0.549455 1_4:+65324728 None:intergenic
TGGAACTTGAATGAGAAGGC+AGG 0.549465 1_4:+65320207 None:intergenic
GGCACGTTAGATGGTCCTGA+AGG 0.554207 1_4:-65324325 Msa0177960:three_prime_UTR
AGGAGAAGAATATGAAGCAG+TGG 0.555430 1_4:+65325647 None:intergenic
GTTTGATTGCATATGATATG+GGG 0.555606 1_4:-65318910 Msa0177960:three_prime_UTR
TATATGTCCTTTAGGACAGC+GGG 0.559132 1_4:-65318841 Msa0177960:three_prime_UTR
TTAGGGAGAACAATATGTAC+TGG 0.559850 1_4:-65323983 Msa0177960:intron
ACTGTATGACAGTGGTTCCT+GGG 0.563238 1_4:-65319611 Msa0177960:intron
GGAGAAGAATATGAAGCAGT+GGG 0.563614 1_4:+65325648 None:intergenic
GTGGCTACTGGATCTAATGA+TGG 0.564521 1_4:-65319108 Msa0177960:three_prime_UTR
CCGAAGCATTTGTGAGCATG+AGG 0.565837 1_4:-65319533 Msa0177960:intron
ATTTCTGCTCTAGAATGTCT+AGG 0.565900 1_4:+65318731 None:intergenic
CAACAATCTGGCTTCTGTAG+AGG 0.567925 1_4:+65318814 None:intergenic
GAGAGCCGCCAGGAGGATCA+GGG 0.578266 1_4:+65325295 None:intergenic
GCACGTTAGATGGTCCTGAA+GGG 0.585298 1_4:-65324324 Msa0177960:three_prime_UTR
TAATCACGAGTACCTTGTCT+CGG 0.589265 1_4:-65318995 Msa0177960:three_prime_UTR
CACGTTAGATGGTCCTGAAG+GGG 0.591663 1_4:-65324323 Msa0177960:three_prime_UTR
AACATGTTAATCCCTCGGTA+TGG 0.591723 1_4:+65321087 None:intergenic
CATACATTCACTGGTCATGA+TGG 0.599726 1_4:-65325098 Msa0177960:intron
GATGGTGATGGTGATGGTGA+TGG 0.603742 1_4:-65325179 Msa0177960:three_prime_UTR
CATGGATAAAATGACCATCT+GGG 0.612989 1_4:-65319575 Msa0177960:three_prime_UTR
AAATCTTACAGTGGCTCAGG+TGG 0.615875 1_4:-65324228 Msa0177960:intron
TATAATAAGACAAACAAAGA+CGG 0.616375 1_4:+65325521 None:intergenic
GATCAGGGCCACCATCTGGA+TGG 0.617941 1_4:+65325310 None:intergenic
GGAACTTGAATGAGAAGGCA+GGG 0.618213 1_4:+65320208 None:intergenic
TGCCTGCAGCCCAACAGATG+AGG 0.618221 1_4:-65324820 Msa0177960:three_prime_UTR
ATCGGGAGTAAAATCACCAC+AGG 0.624969 1_4:+65324093 None:intergenic
GTGACATGTTCAACCTGGCT+TGG 0.626776 1_4:-65319141 Msa0177960:three_prime_UTR
GGTCATCCATACCATACCGA+GGG 0.627020 1_4:-65321098 Msa0177960:three_prime_UTR
GATCTAAAGAAGCCGAGACA+AGG 0.627111 1_4:+65318983 None:intergenic
AGTTTAGGATTTAGCCACGA+TGG 0.627308 1_4:-65324415 Msa0177960:three_prime_UTR
GATGCGTCTGGAAATCTGAA+AGG 0.634031 1_4:-65324346 Msa0177960:three_prime_UTR
ATCGCAGATGGTGATGGTGA+TGG 0.637108 1_4:-65325185 Msa0177960:intron
AGTGTGTTGGATTCGCACCA+AGG 0.639273 1_4:-65320181 Msa0177960:intron
GGAAGAAGTTCATCGTCAGA+GGG 0.639941 1_4:+65325348 None:intergenic
ATGTCGTTTAATGGTCACGC+TGG 0.641738 1_4:-65324124 Msa0177960:three_prime_UTR
ATGGAGTGACATGTTCAACC+TGG 0.644264 1_4:-65319146 Msa0177960:three_prime_UTR
GGAGTGCTCTACATCCCAGA+TGG 0.644840 1_4:+65319561 None:intergenic
ATGACGTAGGATTTCTCTGG+AGG 0.647613 1_4:-65324773 Msa0177960:three_prime_UTR
ACGTTAGATGGTCCTGAAGG+GGG 0.655427 1_4:-65324322 Msa0177960:three_prime_UTR
CCTGATGACCATCCAGATGG+TGG 0.659469 1_4:-65325318 Msa0177960:three_prime_UTR
GCACCTGAGAATGGAGACGA+CGG 0.662780 1_4:+65325808 None:intergenic
TTGATGAATCCTCCTCAGTG+TGG 0.662951 1_4:-65324174 Msa0177960:three_prime_UTR
ATTCATCAAAACCAGCAATG+AGG 0.666974 1_4:+65324188 None:intergenic
AATGTGTCAGAACATTTAGA+GGG 0.671297 1_4:-65319053 Msa0177960:three_prime_UTR
GAAAGCATTCATGTTGTGCG+AGG 0.671673 1_4:-65323917 Msa0177960:intron
ATTCCACATCCACACTGAGG+AGG 0.672492 1_4:+65324165 None:intergenic
CCTGAGAATGGAGACGACGG+CGG 0.675601 1_4:+65325811 None:intergenic
ACAGGAGCTGGTGATGACGT+AGG 0.681696 1_4:-65324786 Msa0177960:three_prime_UTR
GGATCGGGAGAGCCGCCAGG+AGG 0.683258 1_4:+65325288 None:intergenic
AGGTCATCCATACCATACCG+AGG 0.684577 1_4:-65321099 Msa0177960:three_prime_UTR
TCAATGGAACTTGAATGAGA+AGG 0.685059 1_4:+65320203 None:intergenic
GTATATGTCCTTTAGGACAG+CGG 0.693297 1_4:-65318842 Msa0177960:three_prime_UTR
TGGCTCAGGTGGCATCCAAG+AGG 0.696728 1_4:-65324217 Msa0177960:three_prime_UTR
CACGCTGGTAGTGTGACCTG+TGG 0.697317 1_4:-65324109 Msa0177960:three_prime_UTR
GGTTGGCGTCTAAAATAACA+CGG 0.705161 1_4:+65325881 None:intergenic
GCACCTGATGACCATCCAGA+TGG 0.708312 1_4:-65325321 Msa0177960:three_prime_UTR
ATGCCAGAAACGTTCCATCG+TGG 0.721913 1_4:+65324401 None:intergenic
GCTATTCCACATCCACACTG+AGG 0.751183 1_4:+65324162 None:intergenic
GGTGGCCCTGATCCTCCTGG+CGG 0.759172 1_4:-65325300 Msa0177960:three_prime_UTR
TGGCGTCTAAAATAACACGG+AGG 0.847487 1_4:+65325884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTTAATATTGTAATTTT+GGG + chr1_4:65320677-65320696 None:intergenic 10.0%
!!! TAAACTTAATATTGTAATTT+TGG + chr1_4:65320678-65320697 None:intergenic 10.0%
!!! ATATATTGTTTTCTTATGAA+AGG - chr1_4:65319790-65319809 Msa0177960:intron 15.0%
!!! AAAGTTATGTAACAATTTTT+GGG - chr1_4:65322678-65322697 Msa0177960:intron 15.0%
!! ATAATTTCAAAAATAACTGT+AGG - chr1_4:65323273-65323292 Msa0177960:intron 15.0%
!! ATTCTTTGTATTTAATGTAT+CGG + chr1_4:65323334-65323353 None:intergenic 15.0%
!!! TATCCTATTGTATTTTAATT+TGG - chr1_4:65325284-65325303 Msa0177960:intron 15.0%
!! ATTCCAAATTAAAATACAAT+AGG + chr1_4:65325290-65325309 None:intergenic 15.0%
!! TATAATAAGACAAACAAAGA+CGG + chr1_4:65318986-65319005 None:intergenic 20.0%
!!! ATTATTTTAAATATCGCAGA+TGG - chr1_4:65319307-65319326 Msa0177960:intron 20.0%
!!! GATATTTTTTAATGCTTTCT+TGG - chr1_4:65319633-65319652 Msa0177960:intron 20.0%
!! TATCTAGTATAATATAAGTG+TGG - chr1_4:65319968-65319987 Msa0177960:intron 20.0%
!! GACATAATATAATATTCTGA+TGG + chr1_4:65321261-65321280 None:intergenic 20.0%
!! TCATCATACTAAGAATTTAA+AGG - chr1_4:65321337-65321356 Msa0177960:intron 20.0%
!! CATCATACTAAGAATTTAAA+GGG - chr1_4:65321338-65321357 Msa0177960:intron 20.0%
!! ATCATACTAAGAATTTAAAG+GGG - chr1_4:65321339-65321358 Msa0177960:intron 20.0%
!! AAGAATTATACGGTTTATTA+AGG + chr1_4:65321407-65321426 None:intergenic 20.0%
!!! AGGTTTTCAAAAGAATTATA+CGG + chr1_4:65321417-65321436 None:intergenic 20.0%
!!! AAATCAACCACTTTTTTTTA+AGG + chr1_4:65322228-65322247 None:intergenic 20.0%
!!! TTATGTTAAACCTTTTGAAT+TGG - chr1_4:65322307-65322326 Msa0177960:intron 20.0%
!! AATTGGTATTCAATGATTTA+TGG - chr1_4:65322324-65322343 Msa0177960:intron 20.0%
!! AATAGATATGTCTTAAGAAA+CGG - chr1_4:65322613-65322632 Msa0177960:intron 20.0%
!! AAAAAAATTGATAAGCAAGA+AGG + chr1_4:65322646-65322665 None:intergenic 20.0%
!!! CAAAGTTATGTAACAATTTT+TGG - chr1_4:65322677-65322696 Msa0177960:intron 20.0%
!! CATATCGTATCATAAAAATA+AGG + chr1_4:65322884-65322903 None:intergenic 20.0%
!! ATCATATCATGTAAATAACA+GGG + chr1_4:65323308-65323327 None:intergenic 20.0%
!! TATCATATCATGTAAATAAC+AGG + chr1_4:65323309-65323328 None:intergenic 20.0%
!!! TTAGTTATGTTTCTAAGATT+TGG - chr1_4:65323643-65323662 Msa0177960:intron 20.0%
!! AATATGTTAGAAACTAATGT+GGG + chr1_4:65323748-65323767 None:intergenic 20.0%
!! AAATATGTTAGAAACTAATG+TGG + chr1_4:65323749-65323768 None:intergenic 20.0%
!!! ATCCCAATTTTAATCATATT+GGG + chr1_4:65323846-65323865 None:intergenic 20.0%
!!! TATCCCAATTTTAATCATAT+TGG + chr1_4:65323847-65323866 None:intergenic 20.0%
!! AAACTCGATTACATTATATA+TGG - chr1_4:65323876-65323895 Msa0177960:intron 20.0%
!!! AAATTGATTAGTCAAAAGTT+TGG - chr1_4:65323954-65323973 Msa0177960:three_prime_UTR 20.0%
!!! TGCAACTTTATTTATGTAAA+AGG - chr1_4:65324201-65324220 Msa0177960:three_prime_UTR 20.0%
!!! GCAACTTTATTTATGTAAAA+GGG - chr1_4:65324202-65324221 Msa0177960:three_prime_UTR 20.0%
!!! ACTATTCATATTTAAGGTTT+AGG + chr1_4:65324711-65324730 None:intergenic 20.0%
!! AAACCTTAAATATGAATAGT+TGG - chr1_4:65324711-65324730 Msa0177960:intron 20.0%
!!! CTCAAAAGTTTTTTGTTTTA+TGG - chr1_4:65325858-65325877 Msa0177960:CDS 20.0%
! TAGCGAGAAAATTGATTAAA+AGG + chr1_4:65318760-65318779 None:intergenic 25.0%
! ACTGTTTATTTCCTTCTATA+AGG - chr1_4:65318909-65318928 Msa0177960:three_prime_UTR 25.0%
! CTGTTTATTTCCTTCTATAA+GGG - chr1_4:65318910-65318929 Msa0177960:three_prime_UTR 25.0%
! TGTTTATTTCCTTCTATAAG+GGG - chr1_4:65318911-65318930 Msa0177960:three_prime_UTR 25.0%
!! GTCTTTGTTTGTCTTATTAT+AGG - chr1_4:65318985-65319004 Msa0177960:three_prime_UTR 25.0%
!! TTGTATTGCTTAAAGTATCA+AGG + chr1_4:65319032-65319051 None:intergenic 25.0%
! ACATAAACAAATAGAGTAGA+AGG + chr1_4:65319436-65319455 None:intergenic 25.0%
! ACAATATATACCATTAAGCT+GGG + chr1_4:65319779-65319798 None:intergenic 25.0%
! AACAATATATACCATTAAGC+TGG + chr1_4:65319780-65319799 None:intergenic 25.0%
! TTATGAAAGGCAAATATTAG+TGG - chr1_4:65319803-65319822 Msa0177960:intron 25.0%
!!! ATATTAGTGGTTAGTTTGTT+AGG - chr1_4:65319816-65319835 Msa0177960:intron 25.0%
!!! TATTAGTGGTTAGTTTGTTA+GGG - chr1_4:65319817-65319836 Msa0177960:intron 25.0%
!! ACAAAAAAGTGCAAGAAATT+AGG - chr1_4:65320905-65320924 Msa0177960:intron 25.0%
! ATGTTATAACCGATAAAGAA+AGG - chr1_4:65321016-65321035 Msa0177960:three_prime_UTR 25.0%
! GATAAATCTCTGATTAGATA+AGG - chr1_4:65321205-65321224 Msa0177960:intron 25.0%
!!! CATTTTGTTTGTGTTTTCTT+GGG + chr1_4:65321283-65321302 None:intergenic 25.0%
!!! ACATTTTGTTTGTGTTTTCT+TGG + chr1_4:65321284-65321303 None:intergenic 25.0%
! AAGAAAACACAAACAAAATG+TGG - chr1_4:65321283-65321302 Msa0177960:intron 25.0%
! TTCTTAGTATGATGAGAATT+GGG + chr1_4:65321332-65321351 None:intergenic 25.0%
! ATTCTTAGTATGATGAGAAT+TGG + chr1_4:65321333-65321352 None:intergenic 25.0%
! TCATACTAAGAATTTAAAGG+GGG - chr1_4:65321340-65321359 Msa0177960:intron 25.0%
! TTTATGTAGATCTATTGTTG+GGG + chr1_4:65321530-65321549 None:intergenic 25.0%
! CTTTATGTAGATCTATTGTT+GGG + chr1_4:65321531-65321550 None:intergenic 25.0%
! ACTTTATGTAGATCTATTGT+TGG + chr1_4:65321532-65321551 None:intergenic 25.0%
! ATCTCAAGCTAAATACATTT+GGG + chr1_4:65321619-65321638 None:intergenic 25.0%
! TATCTCAAGCTAAATACATT+TGG + chr1_4:65321620-65321639 None:intergenic 25.0%
!!! TGTATTTAGCTTGAGATAAA+AGG - chr1_4:65321622-65321641 Msa0177960:intron 25.0%
! TGAAGTAAAACACTTAATGA+TGG + chr1_4:65321654-65321673 None:intergenic 25.0%
! AGGAAAAGTCTATGAATAAT+CGG - chr1_4:65322033-65322052 Msa0177960:intron 25.0%
! TCCAATACCTTAAAAAAAAG+TGG - chr1_4:65322218-65322237 Msa0177960:intron 25.0%
!!! ACCACTTTTTTTTAAGGTAT+TGG + chr1_4:65322222-65322241 None:intergenic 25.0%
! AACATAAACCTTAGTAGAAA+GGG + chr1_4:65322294-65322313 None:intergenic 25.0%
! TAACATAAACCTTAGTAGAA+AGG + chr1_4:65322295-65322314 None:intergenic 25.0%
! TCATTGAATACCAATTCAAA+AGG + chr1_4:65322320-65322339 None:intergenic 25.0%
!! TAACTTGTATCACACAAAAA+AGG - chr1_4:65322590-65322609 Msa0177960:intron 25.0%
! GTTCTTTGTATTTATCGTAA+AGG + chr1_4:65322907-65322926 None:intergenic 25.0%
!!! TTTTTGAAATTATTGCCTTG+AGG + chr1_4:65323266-65323285 None:intergenic 25.0%
!!! TCGTTAACCTTTACTTTTAT+AGG - chr1_4:65323385-65323404 Msa0177960:intron 25.0%
!!! ATTTTTTGTGCATTAGTCTT+TGG - chr1_4:65323579-65323598 Msa0177960:intron 25.0%
!!! TTTTTTGTGCATTAGTCTTT+GGG - chr1_4:65323580-65323599 Msa0177960:intron 25.0%
! CATAACTAAAGACATATGAA+AGG + chr1_4:65323632-65323651 None:intergenic 25.0%
! ATATGTTAGAAACTAATGTG+GGG + chr1_4:65323747-65323766 None:intergenic 25.0%
! TAATCATATTGGGGATAATT+GGG + chr1_4:65323836-65323855 None:intergenic 25.0%
! TTAATCATATTGGGGATAAT+TGG + chr1_4:65323837-65323856 None:intergenic 25.0%
! ATCCCCAATATGATTAAAAT+TGG - chr1_4:65323840-65323859 Msa0177960:intron 25.0%
! TCCCCAATATGATTAAAATT+GGG - chr1_4:65323841-65323860 Msa0177960:intron 25.0%
!!! TCCCAATTTTAATCATATTG+GGG + chr1_4:65323845-65323864 None:intergenic 25.0%
! GATTACATTATATATGGAGA+TGG - chr1_4:65323882-65323901 Msa0177960:intron 25.0%
!! AATGATGTTCTTTTGTAATG+TGG - chr1_4:65324077-65324096 Msa0177960:intron 25.0%
!!! TATAAATTTAGCTTTCTGCT+TGG - chr1_4:65324233-65324252 Msa0177960:intron 25.0%
! ATGCCAACTATTCATATTTA+AGG + chr1_4:65324717-65324736 None:intergenic 25.0%
! TTGGCATAAGTGAAAATTAT+GGG - chr1_4:65324730-65324749 Msa0177960:intron 25.0%
! GTCTTAATCTAATGATGATT+TGG - chr1_4:65324820-65324839 Msa0177960:three_prime_UTR 25.0%
!! CATATTTAATTAGGAGTACA+AGG + chr1_4:65324847-65324866 None:intergenic 25.0%
! TTAAGGAACAAAGTTATTGA+GGG + chr1_4:65324872-65324891 None:intergenic 25.0%
! TTTAAGGAACAAAGTTATTG+AGG + chr1_4:65324873-65324892 None:intergenic 25.0%
! TTGTTTGATTGCATATGATA+TGG - chr1_4:65325592-65325611 Msa0177960:three_prime_UTR 25.0%
! TGTTTGATTGCATATGATAT+GGG - chr1_4:65325593-65325612 Msa0177960:three_prime_UTR 25.0%
! CATAACATAAAACAACAATC+TGG + chr1_4:65325705-65325724 None:intergenic 25.0%
!!! TGTTGTTTTATGTTATGTTG+TGG - chr1_4:65325708-65325727 Msa0177960:intron 25.0%
!! AGAAATGTGATTGTCTTTTA+AGG - chr1_4:65325790-65325809 Msa0177960:intron 25.0%
TCTGTGAATTAAGTGGAATT+TGG + chr1_4:65318816-65318835 None:intergenic 30.0%
GAAGGAAATAAACAGTAAAC+TGG + chr1_4:65318905-65318924 None:intergenic 30.0%
TCATCATCACTATGATGATT+TGG + chr1_4:65319063-65319082 None:intergenic 30.0%
AATCATCAATGTTGCTATGT+AGG + chr1_4:65319248-65319267 None:intergenic 30.0%
ACAATAACTGTTATCACATG+GGG + chr1_4:65319542-65319561 None:intergenic 30.0%
CACAATAACTGTTATCACAT+GGG + chr1_4:65319543-65319562 None:intergenic 30.0%
ACACAATAACTGTTATCACA+TGG + chr1_4:65319544-65319563 None:intergenic 30.0%
TGTGATAACAGTTATTGTGT+TGG - chr1_4:65319544-65319563 Msa0177960:three_prime_UTR 30.0%
GTGATAACAGTTATTGTGTT+GGG - chr1_4:65319545-65319564 Msa0177960:three_prime_UTR 30.0%
ACACAAATCATATATGTGCA+AGG - chr1_4:65319593-65319612 Msa0177960:three_prime_UTR 30.0%
AATACATAGCTATTGATGTG+TGG - chr1_4:65319937-65319956 Msa0177960:intron 30.0%
GTATAATATAAGTGTGGCAT+TGG - chr1_4:65319974-65319993 Msa0177960:intron 30.0%
TTGATGGAACTGTTAAAATC+TGG - chr1_4:65320135-65320154 Msa0177960:intron 30.0%
TGATGGAACTGTTAAAATCT+GGG - chr1_4:65320136-65320155 Msa0177960:intron 30.0%
! GAAACTATCAAAAGCACAAA+AGG + chr1_4:65320241-65320260 None:intergenic 30.0%
TGAAGATAGATTACTACCAT+CGG + chr1_4:65320432-65320451 None:intergenic 30.0%
GTAGTAATCTATCTTCATCT+TGG - chr1_4:65320435-65320454 Msa0177960:intron 30.0%
! TTCTTTTCACTTGATACCTT+AGG - chr1_4:65320503-65320522 Msa0177960:intron 30.0%
! TCTTTTCACTTGATACCTTA+GGG - chr1_4:65320504-65320523 Msa0177960:intron 30.0%
CAACTAACTCCTTTCTTTAT+CGG + chr1_4:65321028-65321047 None:intergenic 30.0%
! CTGCCTTATTACAAAAATGT+CGG - chr1_4:65321097-65321116 Msa0177960:three_prime_UTR 30.0%
! TGATTAGATAAGGCTTTAGT+TGG - chr1_4:65321215-65321234 Msa0177960:intron 30.0%
TCTGATATGTATCTTTGTGA+TGG - chr1_4:65321490-65321509 Msa0177960:intron 30.0%
ACTGTAAACTTTCCAAGTAT+GGG + chr1_4:65321575-65321594 None:intergenic 30.0%
AACTGTAAACTTTCCAAGTA+TGG + chr1_4:65321576-65321595 None:intergenic 30.0%
! AAGCTAAATACATTTGGGAT+CGG + chr1_4:65321614-65321633 None:intergenic 30.0%
! AGTGTTTTACTTCAATTCCT+AGG - chr1_4:65321660-65321679 Msa0177960:intron 30.0%
! AATGCTTTATTACTCGTAAC+CGG - chr1_4:65321886-65321905 Msa0177960:intron 30.0%
AGCAAACGGAATGTAAATAT+TGG + chr1_4:65321946-65321965 None:intergenic 30.0%
AATATTTACATTCCGTTTGC+TGG - chr1_4:65321945-65321964 Msa0177960:intron 30.0%
TAGTGCACTTAACAAGTATA+AGG + chr1_4:65322099-65322118 None:intergenic 30.0%
!! ATAATGGGTGTTTAAGGAAA+AGG + chr1_4:65322132-65322151 None:intergenic 30.0%
AATACATGGATAATAGATCC+AGG + chr1_4:65322407-65322426 None:intergenic 30.0%
CATCTACAGAAATGAATACA+TGG + chr1_4:65322421-65322440 None:intergenic 30.0%
CTTGATATTGATAAGGAAAG+TGG + chr1_4:65322720-65322739 None:intergenic 30.0%
TTCCTTATCAATATCAAGCA+AGG - chr1_4:65322722-65322741 Msa0177960:intron 30.0%
AGTGAAATTGAGAAATATCC+TGG - chr1_4:65322758-65322777 Msa0177960:intron 30.0%
GTTGGAGCATATAAATCATA+TGG - chr1_4:65322955-65322974 Msa0177960:intron 30.0%
AATTTGACAAAGTTGTGATG+TGG - chr1_4:65323047-65323066 Msa0177960:intron 30.0%
!! AATTTGTTAAGCACGACTTA+GGG - chr1_4:65323129-65323148 Msa0177960:intron 30.0%
! AGGCAATATAAAATTGACTC+TGG + chr1_4:65323246-65323265 None:intergenic 30.0%
! GTCAATTTTATATTGCCTCA+AGG - chr1_4:65323248-65323267 Msa0177960:intron 30.0%
TGGATGACCTATAAAAGTAA+AGG + chr1_4:65323395-65323414 None:intergenic 30.0%
CATATTGTGAATATCACTAC+AGG - chr1_4:65323496-65323515 Msa0177960:intron 30.0%
!!! TTTTTGTGCATTAGTCTTTG+GGG - chr1_4:65323581-65323600 Msa0177960:intron 30.0%
TTATAAACATAGGTTCGTTC+AGG + chr1_4:65323708-65323727 None:intergenic 30.0%
TGAACGAACCTATGTTTATA+AGG - chr1_4:65323707-65323726 Msa0177960:intron 30.0%
GAACGAACCTATGTTTATAA+GGG - chr1_4:65323708-65323727 Msa0177960:intron 30.0%
TGTCTTTCCCTTATAAACAT+AGG + chr1_4:65323718-65323737 None:intergenic 30.0%
! TAACATATTTTCACGAGTCA+GGG - chr1_4:65323759-65323778 Msa0177960:intron 30.0%
AATCATATTGGGGATAATTG+GGG + chr1_4:65323835-65323854 None:intergenic 30.0%
!! TAATCAACCCAACTGTTTTT+GGG - chr1_4:65324023-65324042 Msa0177960:intron 30.0%
GATAAAACCCAAAAACAGTT+GGG + chr1_4:65324033-65324052 None:intergenic 30.0%
AGATAAAACCCAAAAACAGT+TGG + chr1_4:65324034-65324053 None:intergenic 30.0%
!!! GTTTTTGGGTTTTATCTCAT+CGG - chr1_4:65324037-65324056 Msa0177960:intron 30.0%
AAGGATAAGTGATGAAAGTT+TGG + chr1_4:65324150-65324169 None:intergenic 30.0%
AAATGTTGTATCTTGTTGAC+AGG - chr1_4:65324264-65324283 Msa0177960:intron 30.0%
ATGACTGTAACTCTATAATG+CGG + chr1_4:65324483-65324502 None:intergenic 30.0%
CTACTTCTTTCAAACATCAA+CGG + chr1_4:65324551-65324570 None:intergenic 30.0%
GTTGATGTTTGAAAGAAGTA+GGG - chr1_4:65324550-65324569 Msa0177960:intron 30.0%
TATTTACGAGTCATAACACT+TGG + chr1_4:65324603-65324622 None:intergenic 30.0%
GTTGGCATAAGTGAAAATTA+TGG - chr1_4:65324729-65324748 Msa0177960:intron 30.0%
TTGAGGGCTCATATTTAATT+AGG + chr1_4:65324856-65324875 None:intergenic 30.0%
! AATCAACACCCATTTTCTTA+TGG - chr1_4:65325121-65325140 Msa0177960:three_prime_UTR 30.0%
! ATCAACACCCATTTTCTTAT+GGG - chr1_4:65325122-65325141 Msa0177960:three_prime_UTR 30.0%
GATTTCACCCATAAGAAAAT+GGG + chr1_4:65325132-65325151 None:intergenic 30.0%
! CATTTTCTTATGGGTGAAAT+CGG - chr1_4:65325131-65325150 Msa0177960:three_prime_UTR 30.0%
! ATTTTCTTATGGGTGAAATC+GGG - chr1_4:65325132-65325151 Msa0177960:three_prime_UTR 30.0%
AGTCTCACCATATTGAAAAT+GGG + chr1_4:65325182-65325201 None:intergenic 30.0%
AATGTGTCAGAACATTTAGA+GGG - chr1_4:65325451-65325470 Msa0177960:three_prime_UTR 30.0%
GTTTGATTGCATATGATATG+GGG - chr1_4:65325594-65325613 Msa0177960:three_prime_UTR 30.0%
!!! CTAATCAAAACCCCTTTTTT+TGG - chr1_4:65325628-65325647 Msa0177960:CDS 30.0%
! CATAAGGTTTCGAATTTTGA+CGG - chr1_4:65325749-65325768 Msa0177960:intron 30.0%
!!! AGTTTTTTGTTTTATGGCGA+TGG - chr1_4:65325864-65325883 Msa0177960:CDS 30.0%
!!! GTTTTTTGTTTTATGGCGAT+GGG - chr1_4:65325865-65325884 Msa0177960:CDS 30.0%
!!! GAATGAATGGATTTTCAGGT+TGG + chr1_4:65318643-65318662 None:intergenic 35.0%
!! CACTGAATGAATGGATTTTC+AGG + chr1_4:65318647-65318666 None:intergenic 35.0%
CTGAAAATCCATTCATTCAG+TGG - chr1_4:65318645-65318664 Msa0177960:three_prime_UTR 35.0%
TGTTCAATCCACTGAATGAA+TGG + chr1_4:65318656-65318675 None:intergenic 35.0%
!! AAGAGTGTCTGTGAATTAAG+TGG + chr1_4:65318823-65318842 None:intergenic 35.0%
ATTATCTTGCCCCTTATAGA+AGG + chr1_4:65318923-65318942 None:intergenic 35.0%
TTAAATATCGCAGATGGTGA+TGG - chr1_4:65319313-65319332 Msa0177960:intron 35.0%
CTTTCTTGGATTCTTGTGTA+GGG - chr1_4:65319647-65319666 Msa0177960:intron 35.0%
TTTCTTGGATTCTTGTGTAG+GGG - chr1_4:65319648-65319667 Msa0177960:intron 35.0%
ATGTTTCAACCCATACGATT+GGG - chr1_4:65319905-65319924 Msa0177960:intron 35.0%
!! GTTTGTTATCAATCTTGTGC+AGG - chr1_4:65320047-65320066 Msa0177960:intron 35.0%
ACAGATTCTGTATCGAGTTT+AGG - chr1_4:65320074-65320093 Msa0177960:intron 35.0%
TGAGCCACTGTAAGATTTAA+CGG + chr1_4:65320274-65320293 None:intergenic 35.0%
ATTCATCAAAACCAGCAATG+AGG + chr1_4:65320319-65320338 None:intergenic 35.0%
! GACTTCCTTATGTCGTTTAA+TGG - chr1_4:65320371-65320390 Msa0177960:intron 35.0%
GAAGATAGATTACTACCATC+GGG + chr1_4:65320431-65320450 None:intergenic 35.0%
AGTACATATTGTTCTCCCTA+AGG + chr1_4:65320522-65320541 None:intergenic 35.0%
TTAGGGAGAACAATATGTAC+TGG - chr1_4:65320521-65320540 Msa0177960:intron 35.0%
!!! TTTTGGGTTCCATATTCTCA+AGG + chr1_4:65320561-65320580 None:intergenic 35.0%
AGAATATGGAACCCAAAAAG+TGG - chr1_4:65320563-65320582 Msa0177960:intron 35.0%
!!! GAATGCTTTCTCCACTTTTT+GGG + chr1_4:65320577-65320596 None:intergenic 35.0%
!! TGAATGCTTTCTCCACTTTT+TGG + chr1_4:65320578-65320597 None:intergenic 35.0%
TTAGAAGTTCTCTTGTAGAC+AGG + chr1_4:65320729-65320748 None:intergenic 35.0%
AAAGGAGTTAGTTGTACAGT+AGG - chr1_4:65321034-65321053 Msa0177960:three_prime_UTR 35.0%
! TGGCCGACATTTTTGTAATA+AGG + chr1_4:65321103-65321122 None:intergenic 35.0%
!! AGAGTAGTTCTAATACTGTG+TGG + chr1_4:65321123-65321142 None:intergenic 35.0%
TCAGAGATTTATCCCTTTGA+GGG + chr1_4:65321198-65321217 None:intergenic 35.0%
ATCAGAGATTTATCCCTTTG+AGG + chr1_4:65321199-65321218 None:intergenic 35.0%
AATGTGGATCTTCTATCATC+CGG - chr1_4:65321299-65321318 Msa0177960:intron 35.0%
! CATATCAGATTTGCTCTACA+AGG + chr1_4:65321479-65321498 None:intergenic 35.0%
! AGAAAGATGTGGATTAAGCT+TGG - chr1_4:65321712-65321731 Msa0177960:intron 35.0%
! ATGCTTTATTACTCGTAACC+GGG - chr1_4:65321887-65321906 Msa0177960:intron 35.0%
GTATACATACAACAACTACC+CGG + chr1_4:65321908-65321927 None:intergenic 35.0%
TCCTTAAACACCCATTATGA+TGG - chr1_4:65322134-65322153 Msa0177960:intron 35.0%
ATGTTCACTACCACATAATG+GGG + chr1_4:65322177-65322196 None:intergenic 35.0%
CATGTTCACTACCACATAAT+GGG + chr1_4:65322178-65322197 None:intergenic 35.0%
ACATGTTCACTACCACATAA+TGG + chr1_4:65322179-65322198 None:intergenic 35.0%
GAATCTACAGGAGTAAATAC+AGG + chr1_4:65322385-65322404 None:intergenic 35.0%
TATTTACTCCTGTAGATTCC+TGG - chr1_4:65322386-65322405 Msa0177960:intron 35.0%
TAATAGATCCAGGAATCTAC+AGG + chr1_4:65322397-65322416 None:intergenic 35.0%
TATTCATTTCTGTAGATGCC+TGG - chr1_4:65322423-65322442 Msa0177960:intron 35.0%
TATCATCCAAAACAGAAACC+TGG - chr1_4:65322449-65322468 Msa0177960:intron 35.0%
TCAGAGCTCTTTAGACTATT+TGG - chr1_4:65322499-65322518 Msa0177960:intron 35.0%
CAGAGCTCTTTAGACTATTT+GGG - chr1_4:65322500-65322519 Msa0177960:intron 35.0%
ATTGATAAGCAAGAAGGTTG+TGG + chr1_4:65322640-65322659 None:intergenic 35.0%
GACCTTGCTTGATATTGATA+AGG + chr1_4:65322727-65322746 None:intergenic 35.0%
ATTCATGTCAAATTGCAGCT+TGG - chr1_4:65322806-65322825 Msa0177960:intron 35.0%
!! CAGCTTGGTCGATTTTATAT+AGG - chr1_4:65322821-65322840 Msa0177960:intron 35.0%
TTATATGCTCCAACTTGAGA+GGG + chr1_4:65322949-65322968 None:intergenic 35.0%
TTTATATGCTCCAACTTGAG+AGG + chr1_4:65322950-65322969 None:intergenic 35.0%
! AGAAGCATATTGAGATAGAC+TGG + chr1_4:65323102-65323121 None:intergenic 35.0%
AGTCGTGCTTAACAAATTGA+GGG + chr1_4:65323127-65323146 None:intergenic 35.0%
AAGTCGTGCTTAACAAATTG+AGG + chr1_4:65323128-65323147 None:intergenic 35.0%
!! CAATTTGTTAAGCACGACTT+AGG - chr1_4:65323128-65323147 Msa0177960:intron 35.0%
CTCAATATGAAATGAGCCTA+TGG + chr1_4:65323163-65323182 None:intergenic 35.0%
TGCTAAACATGTTAATCCCT+CGG + chr1_4:65323425-65323444 None:intergenic 35.0%
ACTTCAACTATTGCTCTTAC+TGG - chr1_4:65323454-65323473 Msa0177960:intron 35.0%
TAATGTGAGACTCAACATTC+TGG + chr1_4:65323673-65323692 None:intergenic 35.0%
TTAGAAACTAATGTGGGGAA+GGG + chr1_4:65323742-65323761 None:intergenic 35.0%
! CTAACATATTTTCACGAGTC+AGG - chr1_4:65323758-65323777 Msa0177960:intron 35.0%
! GATTAGTCAAAAGTTTGGCT+TGG - chr1_4:65323959-65323978 Msa0177960:three_prime_UTR 35.0%
! GTAATCAACCCAACTGTTTT+TGG - chr1_4:65324022-65324041 Msa0177960:intron 35.0%
AAAAGGAACAAACTAGCACA+AGG + chr1_4:65324169-65324188 None:intergenic 35.0%
TCAATGGAACTTGAATGAGA+AGG + chr1_4:65324304-65324323 None:intergenic 35.0%
!! GCTAGTCTTAAAACATACCT+TGG + chr1_4:65324343-65324362 None:intergenic 35.0%
TGACTGTAACTCTATAATGC+GGG + chr1_4:65324482-65324501 None:intergenic 35.0%
CGTTGATGTTTGAAAGAAGT+AGG - chr1_4:65324549-65324568 Msa0177960:intron 35.0%
GTAATTCCATCTCATTCTCA+AGG - chr1_4:65324665-65324684 Msa0177960:intron 35.0%
ATCATTCCTTGAGAATGAGA+TGG + chr1_4:65324674-65324693 None:intergenic 35.0%
TCCTTAAAACTGTATGACAG+TGG - chr1_4:65324885-65324904 Msa0177960:intron 35.0%
! ACCACTGTCATACAGTTTTA+AGG + chr1_4:65324889-65324908 None:intergenic 35.0%
CATGGATAAAATGACCATCT+GGG - chr1_4:65324929-65324948 Msa0177960:intron 35.0%
CGATTTCACCCATAAGAAAA+TGG + chr1_4:65325133-65325152 None:intergenic 35.0%
GAGTCTCACCATATTGAAAA+TGG + chr1_4:65325183-65325202 None:intergenic 35.0%
ATAGGATATGCATGAACATC+AGG + chr1_4:65325272-65325291 None:intergenic 35.0%
GAATGTGTCAGAACATTTAG+AGG - chr1_4:65325450-65325469 Msa0177960:three_prime_UTR 35.0%
ATGCTTGTGTGCCAAAAAAA+GGG + chr1_4:65325642-65325661 None:intergenic 35.0%
CAAGCATGTATATGTCCTTT+AGG - chr1_4:65325655-65325674 Msa0177960:CDS 35.0%
GAGTCAAAAACTGTTGCATA+AGG - chr1_4:65325733-65325752 Msa0177960:intron 35.0%
!! ATTTCTGCTCTAGAATGTCT+AGG + chr1_4:65325776-65325795 None:intergenic 35.0%
! GGTTGGCGTCTAAAATAACA+CGG + chr1_4:65318626-65318645 None:intergenic 40.0%
GGAGAAGAATATGAAGCAGT+GGG + chr1_4:65318859-65318878 None:intergenic 40.0%
AGGAGAAGAATATGAAGCAG+TGG + chr1_4:65318860-65318879 None:intergenic 40.0%
! CAGCTTTGTAGAAGTTGGAA+AGG + chr1_4:65318880-65318899 None:intergenic 40.0%
! TGGTTCAGCTTTGTAGAAGT+TGG + chr1_4:65318885-65318904 None:intergenic 40.0%
GATTCTGTGCATACATTCAC+TGG - chr1_4:65319397-65319416 Msa0177960:intron 40.0%
CATACATTCACTGGTCATGA+TGG - chr1_4:65319406-65319425 Msa0177960:intron 40.0%
! TGTTTTTCCTTTTTCCGTCC+TGG - chr1_4:65319453-65319472 Msa0177960:intron 40.0%
AATCAAACCAGGACGGAAAA+AGG + chr1_4:65319463-65319482 None:intergenic 40.0%
!! TTTTTCCGTCCTGGTTTGAT+TGG - chr1_4:65319462-65319481 Msa0177960:intron 40.0%
!! TTTTCCGTCCTGGTTTGATT+GGG - chr1_4:65319463-65319482 Msa0177960:intron 40.0%
GCTTTCTTGGATTCTTGTGT+AGG - chr1_4:65319646-65319665 Msa0177960:intron 40.0%
! TTTCTCTGGAGGATCCTTAA+TGG - chr1_4:65319742-65319761 Msa0177960:intron 40.0%
GAGGATCCTTAATGGAGAAT+GGG - chr1_4:65319750-65319769 Msa0177960:intron 40.0%
!! AGTGGTTAGTTTGTTAGGGT+AGG - chr1_4:65319821-65319840 Msa0177960:intron 40.0%
!! GTGGTTAGTTTGTTAGGGTA+GGG - chr1_4:65319822-65319841 Msa0177960:intron 40.0%
!! TGGTTAGTTTGTTAGGGTAG+GGG - chr1_4:65319823-65319842 Msa0177960:intron 40.0%
TAGTAGCAGAGATTGAACTC+TGG - chr1_4:65319859-65319878 Msa0177960:intron 40.0%
ACATCGAAGGAGTTCAATGT+AGG + chr1_4:65319889-65319908 None:intergenic 40.0%
GATGTTTCAACCCATACGAT+TGG - chr1_4:65319904-65319923 Msa0177960:intron 40.0%
ATGCAGATACCCAATCGTAT+GGG + chr1_4:65319917-65319936 None:intergenic 40.0%
TATGCAGATACCCAATCGTA+TGG + chr1_4:65319918-65319937 None:intergenic 40.0%
!! TGTGGCATTGGCATGATAAT+TGG - chr1_4:65319986-65320005 Msa0177960:intron 40.0%
! AGTTTAGGATTTAGCCACGA+TGG - chr1_4:65320089-65320108 Msa0177960:intron 40.0%
! AATCTGAAAGGCACGTTAGA+TGG - chr1_4:65320170-65320189 Msa0177960:intron 40.0%
GTTGCCGTTAAATCTTACAG+TGG - chr1_4:65320267-65320286 Msa0177960:intron 40.0%
GTTAAATCTTACAGTGGCTC+AGG - chr1_4:65320273-65320292 Msa0177960:intron 40.0%
CGTGACCATTAAACGACATA+AGG + chr1_4:65320379-65320398 None:intergenic 40.0%
ACGATGCAACCTTGAGAATA+TGG - chr1_4:65320549-65320568 Msa0177960:intron 40.0%
! GTTTAAGATGCTTCGAACAC+CGG - chr1_4:65320693-65320712 Msa0177960:intron 40.0%
! CTCAAATTCTAGTTGAGGCA+AGG + chr1_4:65320872-65320891 None:intergenic 40.0%
! CGCTTCTCAAATTCTAGTTG+AGG + chr1_4:65320877-65320896 None:intergenic 40.0%
CAGTGATCTTATAGTGAGCT+AGG - chr1_4:65321070-65321089 Msa0177960:three_prime_UTR 40.0%
ATGAGAATTGGGCATCTAAC+CGG + chr1_4:65321321-65321340 None:intergenic 40.0%
AAAACCTTCTGATACTCCTC+TGG - chr1_4:65321430-65321449 Msa0177960:intron 40.0%
CTACATAGTCTACCCATACT+TGG - chr1_4:65321560-65321579 Msa0177960:intron 40.0%
CATCTTTCTCACAAACTGCT+AGG + chr1_4:65321701-65321720 None:intergenic 40.0%
AGCAGTTTGTGAGAAAGATG+TGG - chr1_4:65321701-65321720 Msa0177960:intron 40.0%
AGTCTTGCATATGCTCTCTT+GGG + chr1_4:65321827-65321846 None:intergenic 40.0%
AAACACACAACAATGGGGTT+TGG + chr1_4:65321856-65321875 None:intergenic 40.0%
CATTGGCAATATCCAGCAAA+CGG + chr1_4:65321960-65321979 None:intergenic 40.0%
! CAAAGTGAGGAGTATGCTAA+TGG - chr1_4:65321992-65322011 Msa0177960:intron 40.0%
! GGTGACTGACTTTACAATAG+AGG - chr1_4:65322013-65322032 Msa0177960:intron 40.0%
AATCGGAACCTGATTGTTGT+TGG - chr1_4:65322050-65322069 Msa0177960:intron 40.0%
AACGGTTTCCAACAACAATC+AGG + chr1_4:65322061-65322080 None:intergenic 40.0%
AGGCTCAACTTGATGCAAAA+CGG + chr1_4:65322079-65322098 None:intergenic 40.0%
!! GCCATCATAATGGGTGTTTA+AGG + chr1_4:65322138-65322157 None:intergenic 40.0%
ATCTGCAGTGCCATCATAAT+GGG + chr1_4:65322147-65322166 None:intergenic 40.0%
AATCTGCAGTGCCATCATAA+TGG + chr1_4:65322148-65322167 None:intergenic 40.0%
TTATGATGGCACTGCAGATT+AGG - chr1_4:65322148-65322167 Msa0177960:intron 40.0%
TACTGCTTATTGCCTAGACA+AGG - chr1_4:65322250-65322269 Msa0177960:intron 40.0%
ACCTTAGTAGAAAGGGTAGT+TGG + chr1_4:65322287-65322306 None:intergenic 40.0%
!! CTGTTTTGGATGATAGATCC+AGG + chr1_4:65322444-65322463 None:intergenic 40.0%
AGCTCTTTAGACTATTTGGG+CGG - chr1_4:65322503-65322522 Msa0177960:intron 40.0%
CTAGATTTGACAACATTCCC+AGG + chr1_4:65322556-65322575 None:intergenic 40.0%
CTGGGAATGTTGTCAAATCT+AGG - chr1_4:65322554-65322573 Msa0177960:intron 40.0%
!! ACTGATTTGTGTACCTCTCA+AGG - chr1_4:65322999-65323018 Msa0177960:intron 40.0%
GTGTTCACTAAATCCTTGAG+AGG + chr1_4:65323015-65323034 None:intergenic 40.0%
GCTAGGGAGAAGATCAAATT+GGG + chr1_4:65323073-65323092 None:intergenic 40.0%
TGCTAGGGAGAAGATCAAAT+TGG + chr1_4:65323074-65323093 None:intergenic 40.0%
GTCGTGCTTAACAAATTGAG+GGG + chr1_4:65323126-65323145 None:intergenic 40.0%
AGAGAGACAAAGGAGACATA+TGG - chr1_4:65323195-65323214 Msa0177960:intron 40.0%
! CATATGGTGACACCATGTTT+TGG - chr1_4:65323211-65323230 Msa0177960:intron 40.0%
TGGTGTGTAGTTCCAAAACA+TGG + chr1_4:65323226-65323245 None:intergenic 40.0%
AACATGTTAATCCCTCGGTA+TGG + chr1_4:65323420-65323439 None:intergenic 40.0%
!! TATTGCTCTTACTGGTTCTG+TGG - chr1_4:65323462-65323481 Msa0177960:intron 40.0%
GTTAGAAACTAATGTGGGGA+AGG + chr1_4:65323743-65323762 None:intergenic 40.0%
!! TAGTCAAAAGTTTGGCTTGG+TGG - chr1_4:65323962-65323981 Msa0177960:three_prime_UTR 40.0%
!! TTGGGTTGATTACCTACTCA+AGG + chr1_4:65324015-65324034 None:intergenic 40.0%
TAATGTGGTCTGTGTAGTAC+TGG - chr1_4:65324092-65324111 Msa0177960:three_prime_UTR 40.0%
TTGCAGCATGCAAAGACAAA+AGG + chr1_4:65324186-65324205 None:intergenic 40.0%
TCAAGTTCCATTGAGTGTGT+TGG - chr1_4:65324310-65324329 Msa0177960:intron 40.0%
TCATGTCCATGTATGCTTGT+CGG - chr1_4:65324405-65324424 Msa0177960:three_prime_UTR 40.0%
GCATGGATAAAATGACCATC+TGG - chr1_4:65324928-65324947 Msa0177960:intron 40.0%
TTTGTGAGCATGAGGTTTGT+TGG - chr1_4:65324979-65324998 Msa0177960:intron 40.0%
! TGTGGAGCCCATTTTCAATA+TGG - chr1_4:65325172-65325191 Msa0177960:three_prime_UTR 40.0%
TTTCCATTCTCTGAGCAGTA+TGG - chr1_4:65325339-65325358 Msa0177960:three_prime_UTR 40.0%
! ATGATGGAGCTGTGAGATTA+TGG - chr1_4:65325412-65325431 Msa0177960:three_prime_UTR 40.0%
TGATGGAGCTGTGAGATTAT+GGG - chr1_4:65325413-65325432 Msa0177960:three_prime_UTR 40.0%
TAATCACGAGTACCTTGTCT+CGG - chr1_4:65325509-65325528 Msa0177960:three_prime_UTR 40.0%
! GCTCGTGTTTTCGATGTTAA+AGG - chr1_4:65325549-65325568 Msa0177960:three_prime_UTR 40.0%
TGCTTGTGTGCCAAAAAAAG+GGG + chr1_4:65325641-65325660 None:intergenic 40.0%
CATGCTTGTGTGCCAAAAAA+AGG + chr1_4:65325643-65325662 None:intergenic 40.0%
!! GTATATGTCCTTTAGGACAG+CGG - chr1_4:65325662-65325681 Msa0177960:CDS 40.0%
!! TATATGTCCTTTAGGACAGC+GGG - chr1_4:65325663-65325682 Msa0177960:CDS 40.0%
! TGGCGTCTAAAATAACACGG+AGG + chr1_4:65318623-65318642 None:intergenic 45.0%
!! AGTGCTGCTTTCACTTGTGT+AGG - chr1_4:65318787-65318806 Msa0177960:three_prime_UTR 45.0%
GGAAGAAGTTCATCGTCAGA+GGG + chr1_4:65319159-65319178 None:intergenic 45.0%
AGGAAGAAGTTCATCGTCAG+AGG + chr1_4:65319160-65319179 None:intergenic 45.0%
!! TTTGATTGGGTTGGGAACCT+AGG - chr1_4:65319476-65319495 Msa0177960:intron 45.0%
! AGAAGCACACTACAAGTCCT+AGG + chr1_4:65319496-65319515 None:intergenic 45.0%
CTTGTAGTGTGCTTCTCTCT+AGG - chr1_4:65319500-65319519 Msa0177960:intron 45.0%
! GTGATGACGTAGGATTTCTC+TGG - chr1_4:65319728-65319747 Msa0177960:intron 45.0%
ATGACGTAGGATTTCTCTGG+AGG - chr1_4:65319731-65319750 Msa0177960:intron 45.0%
GGAGGATCCTTAATGGAGAA+TGG - chr1_4:65319749-65319768 Msa0177960:intron 45.0%
!! GGTTAGTTTGTTAGGGTAGG+GGG - chr1_4:65319824-65319843 Msa0177960:intron 45.0%
TCGAAGGAGTTCAATGTAGG+AGG + chr1_4:65319886-65319905 None:intergenic 45.0%
! CGTATGGGTTGAAACATCGA+AGG + chr1_4:65319902-65319921 None:intergenic 45.0%
!! CTGGCATCAGGAAGTTTTGA+TGG - chr1_4:65320119-65320138 Msa0177960:intron 45.0%
! GTTAAAATCTGGGATGCGTC+TGG - chr1_4:65320146-65320165 Msa0177960:intron 45.0%
GATGCGTCTGGAAATCTGAA+AGG - chr1_4:65320158-65320177 Msa0177960:intron 45.0%
AAATCTTACAGTGGCTCAGG+TGG - chr1_4:65320276-65320295 Msa0177960:intron 45.0%
GCAATGAGGACATTTCCTCT+TGG + chr1_4:65320305-65320324 None:intergenic 45.0%
AGAGGAAATGTCCTCATTGC+TGG - chr1_4:65320305-65320324 Msa0177960:intron 45.0%
TTGATGAATCCTCCTCAGTG+TGG - chr1_4:65320330-65320349 Msa0177960:intron 45.0%
! ATGTCGTTTAATGGTCACGC+TGG - chr1_4:65320380-65320399 Msa0177960:intron 45.0%
ATCGGGAGTAAAATCACCAC+AGG + chr1_4:65320414-65320433 None:intergenic 45.0%
! TGTGGTGATTTTACTCCCGA+TGG - chr1_4:65320413-65320432 Msa0177960:intron 45.0%
!! GAAAGCATTCATGTTGTGCG+AGG - chr1_4:65320587-65320606 Msa0177960:intron 45.0%
AGTTCTCTTGTAGACAGGAG+AGG + chr1_4:65320724-65320743 None:intergenic 45.0%
GTGAGTGAGCAAAGGAAAGT+TGG - chr1_4:65321163-65321182 Msa0177960:intron 45.0%
TTGGTATCAGACACCCTCAA+AGG - chr1_4:65321182-65321201 Msa0177960:intron 45.0%
TGGTATCAGACACCCTCAAA+GGG - chr1_4:65321183-65321202 Msa0177960:intron 45.0%
TGGTCAAAGAAAGCCACTAG+TGG + chr1_4:65321241-65321260 None:intergenic 45.0%
AATTTACTCCCAACCTCCAG+AGG + chr1_4:65321449-65321468 None:intergenic 45.0%
! CATTTGGGATCGGCTAGAAA+AGG + chr1_4:65321604-65321623 None:intergenic 45.0%
ACACTGGGTGTGAAAAGAGA+GGG - chr1_4:65321773-65321792 Msa0177960:intron 45.0%
GAGTCTTGCATATGCTCTCT+TGG + chr1_4:65321828-65321847 None:intergenic 45.0%
ACCCCATTGTTGTGTGTTTG+AGG - chr1_4:65321857-65321876 Msa0177960:intron 45.0%
CCCTCAAACACACAACAATG+GGG + chr1_4:65321861-65321880 None:intergenic 45.0%
CCCCATTGTTGTGTGTTTGA+GGG - chr1_4:65321858-65321877 Msa0177960:intron 45.0%
GCCCTCAAACACACAACAAT+GGG + chr1_4:65321862-65321881 None:intergenic 45.0%
TGCCCTCAAACACACAACAA+TGG + chr1_4:65321863-65321882 None:intergenic 45.0%
CTTTGACGCTCACTCATCAT+TGG + chr1_4:65321977-65321996 None:intergenic 45.0%
! TTCACTACCACATAATGGGG+TGG + chr1_4:65322174-65322193 None:intergenic 45.0%
GCCAACTACCCTTTCTACTA+AGG - chr1_4:65322283-65322302 Msa0177960:intron 45.0%
TACAGGTAGCAGCAACAAGA+GGG + chr1_4:65322368-65322387 None:intergenic 45.0%
ATACAGGTAGCAGCAACAAG+AGG + chr1_4:65322369-65322388 None:intergenic 45.0%
!! AGAGTGCCAGGTTTCTGTTT+TGG + chr1_4:65322458-65322477 None:intergenic 45.0%
GCTCTTTAGACTATTTGGGC+GGG - chr1_4:65322504-65322523 Msa0177960:intron 45.0%
CTCTTTAGACTATTTGGGCG+GGG - chr1_4:65322505-65322524 Msa0177960:intron 45.0%
TTTGACAACATTCCCAGGAC+AGG + chr1_4:65322551-65322570 None:intergenic 45.0%
TTCAACACTCCCTCTCAAGT+TGG - chr1_4:65322937-65322956 Msa0177960:intron 45.0%
GATAGACTGGCACATTGCTA+GGG + chr1_4:65323089-65323108 None:intergenic 45.0%
AGATAGACTGGCACATTGCT+AGG + chr1_4:65323090-65323109 None:intergenic 45.0%
TGTTAAGCACGACTTAGGGT+TGG - chr1_4:65323133-65323152 Msa0177960:intron 45.0%
AGAGTGAGAGAGAGAGACAA+AGG - chr1_4:65323185-65323204 Msa0177960:intron 45.0%
GTTAATCCCTCGGTATGGTA+TGG + chr1_4:65323415-65323434 None:intergenic 45.0%
ACACTATGAGCTCCTTGAGT+AGG - chr1_4:65324000-65324019 Msa0177960:intron 45.0%
! GTGATGAAAGTTTGGAGCCT+TGG + chr1_4:65324142-65324161 None:intergenic 45.0%
GGAACTTGAATGAGAAGGCA+GGG + chr1_4:65324299-65324318 None:intergenic 45.0%
TGGAACTTGAATGAGAAGGC+AGG + chr1_4:65324300-65324319 None:intergenic 45.0%
TGCGAATCCAACACACTCAA+TGG + chr1_4:65324320-65324339 None:intergenic 45.0%
CATGATCCGACAAGCATACA+TGG + chr1_4:65324414-65324433 None:intergenic 45.0%
TGTCGGATCATGCATGTGTA+TGG - chr1_4:65324422-65324441 Msa0177960:three_prime_UTR 45.0%
ACCGTCAGTGACTTTGTTCA+CGG - chr1_4:65324623-65324642 Msa0177960:intron 45.0%
ACCGTGAACAAAGTCACTGA+CGG + chr1_4:65324627-65324646 None:intergenic 45.0%
AACTGTATGACAGTGGTTCC+TGG - chr1_4:65324892-65324911 Msa0177960:intron 45.0%
ACTGTATGACAGTGGTTCCT+GGG - chr1_4:65324893-65324912 Msa0177960:intron 45.0%
CTCATGCTCACAAATGCTTC+GGG + chr1_4:65324973-65324992 None:intergenic 45.0%
CCTCATGCTCACAAATGCTT+CGG + chr1_4:65324974-65324993 None:intergenic 45.0%
TGTTAGAACTACTCGACGAG+AGG + chr1_4:65325075-65325094 None:intergenic 45.0%
TTCTTATGGGTGAAATCGGG+TGG - chr1_4:65325135-65325154 Msa0177960:three_prime_UTR 45.0%
TCTTATGGGTGAAATCGGGT+GGG - chr1_4:65325136-65325155 Msa0177960:three_prime_UTR 45.0%
TGGGCTCCACATAAAGTTGT+GGG + chr1_4:65325163-65325182 None:intergenic 45.0%
ATGGGCTCCACATAAAGTTG+TGG + chr1_4:65325164-65325183 None:intergenic 45.0%
ACTCCATACTGCTCAGAGAA+TGG + chr1_4:65325345-65325364 None:intergenic 45.0%
ATGGAGTGACATGTTCAACC+TGG - chr1_4:65325358-65325377 Msa0177960:three_prime_UTR 45.0%
GTGGCTACTGGATCTAATGA+TGG - chr1_4:65325396-65325415 Msa0177960:three_prime_UTR 45.0%
AGATTATGGGACAGTCGATC+TGG - chr1_4:65325426-65325445 Msa0177960:three_prime_UTR 45.0%
GATCTAAAGAAGCCGAGACA+AGG + chr1_4:65325524-65325543 None:intergenic 45.0%
! CAACAATCTGGCTTCTGTAG+AGG + chr1_4:65325693-65325712 None:intergenic 45.0%
!! ATTCAAAATTAATATTAAAA+AGG + chr1_4:65325824-65325843 None:intergenic 5.0%
GAAGAGAACGCACCTGAGAA+TGG + chr1_4:65318708-65318727 None:intergenic 50.0%
CATCGTCAGAGGGAACTTCA+TGG + chr1_4:65319149-65319168 None:intergenic 50.0%
ATGTTGCTATGTAGGCCACC+TGG + chr1_4:65319240-65319259 None:intergenic 50.0%
!! ATCGCAGATGGTGATGGTGA+TGG - chr1_4:65319319-65319338 Msa0177960:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - chr1_4:65319325-65319344 Msa0177960:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - chr1_4:65319325-65319344 Msa0177960:intron 50.0%
CCAACCCAATCAAACCAGGA+CGG + chr1_4:65319470-65319489 None:intergenic 50.0%
! CGTCCTGGTTTGATTGGGTT+GGG - chr1_4:65319468-65319487 Msa0177960:intron 50.0%
GTTCCCAACCCAATCAAACC+AGG + chr1_4:65319474-65319493 None:intergenic 50.0%
CCACAAGTGCCTCATCTGTT+GGG + chr1_4:65319696-65319715 None:intergenic 50.0%
GGGAAGCCCATTCTCCATTA+AGG + chr1_4:65319759-65319778 None:intergenic 50.0%
! GAATGGGCTTCCCAGCTTAA+TGG - chr1_4:65319766-65319785 Msa0177960:intron 50.0%
TAGCCACGATGGAACGTTTC+TGG - chr1_4:65320100-65320119 Msa0177960:intron 50.0%
ATGCCAGAAACGTTCCATCG+TGG + chr1_4:65320106-65320125 None:intergenic 50.0%
!! GATGGAACGTTTCTGGCATC+AGG - chr1_4:65320107-65320126 Msa0177960:intron 50.0%
GCACGTTAGATGGTCCTGAA+GGG - chr1_4:65320180-65320199 Msa0177960:intron 50.0%
CACGTTAGATGGTCCTGAAG+GGG - chr1_4:65320181-65320200 Msa0177960:intron 50.0%
ACGTTAGATGGTCCTGAAGG+GGG - chr1_4:65320182-65320201 Msa0177960:three_prime_UTR 50.0%
AATCCTCCTCAGTGTGGATG+TGG - chr1_4:65320336-65320355 Msa0177960:intron 50.0%
ATTCCACATCCACACTGAGG+AGG + chr1_4:65320342-65320361 None:intergenic 50.0%
GCTATTCCACATCCACACTG+AGG + chr1_4:65320345-65320364 None:intergenic 50.0%
CTACTCTTTAACATGCCCCC+TGG - chr1_4:65321136-65321155 Msa0177960:intron 50.0%
! AGGCTTTAGTTGGCCACTAG+TGG - chr1_4:65321225-65321244 Msa0177960:intron 50.0%
! GGGGACTGAAATGATGATGC+TGG - chr1_4:65321359-65321378 Msa0177960:intron 50.0%
ACCTTCTGATACTCCTCTGG+AGG - chr1_4:65321433-65321452 Msa0177960:intron 50.0%
!! ACCTCCAGAGGAGTATCAGA+AGG + chr1_4:65321437-65321456 None:intergenic 50.0%
! TCTGATACTCCTCTGGAGGT+TGG - chr1_4:65321437-65321456 Msa0177960:intron 50.0%
! CTGATACTCCTCTGGAGGTT+GGG - chr1_4:65321438-65321457 Msa0177960:intron 50.0%
TGGGATCGGCTAGAAAAGGA+AGG + chr1_4:65321600-65321619 None:intergenic 50.0%
GGTGAGCTGGACAATATCCT+AGG + chr1_4:65321680-65321699 None:intergenic 50.0%
TCACAAACTGCTAGGTGAGC+TGG + chr1_4:65321693-65321712 None:intergenic 50.0%
AAGATGTGCTGTGACGACAC+TGG - chr1_4:65321757-65321776 Msa0177960:intron 50.0%
AGATGTGCTGTGACGACACT+GGG - chr1_4:65321758-65321777 Msa0177960:intron 50.0%
GACACTGGGTGTGAAAAGAG+AGG - chr1_4:65321772-65321791 Msa0177960:intron 50.0%
GCATATGCTCTCTTGGGTCT+AGG + chr1_4:65321821-65321840 None:intergenic 50.0%
GATGAGTGAGCGTCAAAGTG+AGG - chr1_4:65321979-65321998 Msa0177960:intron 50.0%
GATTAGGCCACCCCATTATG+TGG - chr1_4:65322164-65322183 Msa0177960:intron 50.0%
GCAGACAATGTGCCTTGTCT+AGG + chr1_4:65322265-65322284 None:intergenic 50.0%
CAGCAACAAGAGGGTTCCAT+GGG + chr1_4:65322359-65322378 None:intergenic 50.0%
ACAGAAACCTGGCACTCTCA+TGG - chr1_4:65322460-65322479 Msa0177960:intron 50.0%
!! TGTAAGACCATGAGAGTGCC+AGG + chr1_4:65322470-65322489 None:intergenic 50.0%
TTTAGACTATTTGGGCGGGG+AGG - chr1_4:65322508-65322527 Msa0177960:intron 50.0%
TTAGACTATTTGGGCGGGGA+GGG - chr1_4:65322509-65322528 Msa0177960:intron 50.0%
TCTTACGTTCAGACCTGTCC+TGG - chr1_4:65322535-65322554 Msa0177960:intron 50.0%
CTTACGTTCAGACCTGTCCT+GGG - chr1_4:65322536-65322555 Msa0177960:intron 50.0%
GAAGCTATAGTGAGTGTGCC+AGG + chr1_4:65322779-65322798 None:intergenic 50.0%
!! ACTTAGGGTTGGCTCTCCAT+AGG - chr1_4:65323144-65323163 Msa0177960:intron 50.0%
AGGTCATCCATACCATACCG+AGG - chr1_4:65323405-65323424 Msa0177960:intron 50.0%
GGTCATCCATACCATACCGA+GGG - chr1_4:65323406-65323425 Msa0177960:intron 50.0%
!! GCTCTTACTGGTTCTGTGGA+TGG - chr1_4:65323466-65323485 Msa0177960:intron 50.0%
CTGCAAGAGCTGACTAACCA+AGG - chr1_4:65324122-65324141 Msa0177960:three_prime_UTR 50.0%
AGTGTGTTGGATTCGCACCA+AGG - chr1_4:65324323-65324342 Msa0177960:three_prime_UTR 50.0%
GCACGAATGCACATAGACAC+AGG + chr1_4:65324379-65324398 None:intergenic 50.0%
CTCACAAATGCTTCGGGCTA+AGG + chr1_4:65324967-65324986 None:intergenic 50.0%
! CCGAAGCATTTGTGAGCATG+AGG - chr1_4:65324971-65324990 Msa0177960:intron 50.0%
TAGAACTACTCGACGAGAGG+AGG + chr1_4:65325072-65325091 None:intergenic 50.0%
GTGGGTCCCACAACTTTATG+TGG - chr1_4:65325154-65325173 Msa0177960:three_prime_UTR 50.0%
GTGACATGTTCAACCTGGCT+TGG - chr1_4:65325363-65325382 Msa0177960:three_prime_UTR 50.0%
GCACCTGAGAATGGAGACGA+CGG + chr1_4:65318699-65318718 None:intergenic 55.0%
GGATGGTCATCAGGTGCATC+AGG + chr1_4:65319180-65319199 None:intergenic 55.0%
GCACCTGATGACCATCCAGA+TGG - chr1_4:65319183-65319202 Msa0177960:intron 55.0%
CCACCATCTGGATGGTCATC+AGG + chr1_4:65319189-65319208 None:intergenic 55.0%
CCTGATGACCATCCAGATGG+TGG - chr1_4:65319186-65319205 Msa0177960:intron 55.0%
CTATGTAGGCCACCTGGATC+GGG + chr1_4:65319234-65319253 None:intergenic 55.0%
GCTATGTAGGCCACCTGGAT+CGG + chr1_4:65319235-65319254 None:intergenic 55.0%
!! GGTGATGGTGATGGTGATGG+TGG - chr1_4:65319328-65319347 Msa0177960:intron 55.0%
!! GATGGTGATGGTGATGGTGG+TGG - chr1_4:65319337-65319356 Msa0177960:intron 55.0%
! CCGTCCTGGTTTGATTGGGT+TGG - chr1_4:65319467-65319486 Msa0177960:intron 55.0%
! CCCAACAGATGAGGCACTTG+TGG - chr1_4:65319693-65319712 Msa0177960:intron 55.0%
GCCACAAGTGCCTCATCTGT+TGG + chr1_4:65319697-65319716 None:intergenic 55.0%
! GATGAGGCACTTGTGGCAAC+AGG - chr1_4:65319700-65319719 Msa0177960:intron 55.0%
! ACAGGAGCTGGTGATGACGT+AGG - chr1_4:65319718-65319737 Msa0177960:intron 55.0%
!! AGTTTGTTAGGGTAGGGGGC+TGG - chr1_4:65319828-65319847 Msa0177960:intron 55.0%
GGCACGTTAGATGGTCCTGA+AGG - chr1_4:65320179-65320198 Msa0177960:intron 55.0%
CTTACCTCAACTCCCCCTTC+AGG + chr1_4:65320197-65320216 None:intergenic 55.0%
AGGGGGAGTTGAGGTAAGAC+TGG - chr1_4:65320199-65320218 Msa0177960:three_prime_UTR 55.0%
!! GTAGACAGGAGAGGTGTTGC+CGG + chr1_4:65320715-65320734 None:intergenic 55.0%
TCTTTAACATGCCCCCTGGC+AGG - chr1_4:65321140-65321159 Msa0177960:intron 55.0%
CTTTAACATGCCCCCTGGCA+GGG - chr1_4:65321141-65321160 Msa0177960:intron 55.0%
TTTGCTCACTCACCCTGCCA+GGG + chr1_4:65321156-65321175 None:intergenic 55.0%
CAACAAGAGGGTTCCATGGG+CGG + chr1_4:65322356-65322375 None:intergenic 55.0%
GCAGCAACAAGAGGGTTCCA+TGG + chr1_4:65322360-65322379 None:intergenic 55.0%
TAGACTATTTGGGCGGGGAG+GGG - chr1_4:65322510-65322529 Msa0177960:intron 55.0%
AGTGGTTCCTGGGCTGCAAT+TGG - chr1_4:65324903-65324922 Msa0177960:intron 55.0%
! GGAGTGCTCTACATCCCAGA+TGG + chr1_4:65324946-65324965 None:intergenic 55.0%
CACATACGATGTGCCAAGCC+AGG + chr1_4:65325379-65325398 None:intergenic 55.0%
!! CTGGCTTGGCACATCGTATG+TGG - chr1_4:65325377-65325396 Msa0177960:three_prime_UTR 55.0%
GGCACATCGTATGTGGCTAC+TGG - chr1_4:65325384-65325403 Msa0177960:three_prime_UTR 55.0%
CCTGAGAATGGAGACGACGG+CGG + chr1_4:65318696-65318715 None:intergenic 60.0%
GATCAGGGCCACCATCTGGA+TGG + chr1_4:65319197-65319216 None:intergenic 60.0%
!! GGTGATGGTGATGGTGGTGG+TGG - chr1_4:65319340-65319359 Msa0177960:intron 60.0%
!! GATGGTGATGGTGGTGGTGG+TGG - chr1_4:65319343-65319362 Msa0177960:intron 60.0%
!! GGTGGTGGTGGTGGTGGTAA+TGG - chr1_4:65319358-65319377 Msa0177960:intron 60.0%
!! GGTGGTGGTGGTGGTAATGG+TGG - chr1_4:65319361-65319380 Msa0177960:intron 60.0%
!! GGTGGTGGTGGTAATGGTGG+TGG - chr1_4:65319364-65319383 Msa0177960:intron 60.0%
TGCCTGCAGCCCAACAGATG+AGG - chr1_4:65319684-65319703 Msa0177960:intron 60.0%
TGCCTCATCTGTTGGGCTGC+AGG + chr1_4:65319689-65319708 None:intergenic 60.0%
GCACTTGTGGCAACAGGAGC+TGG - chr1_4:65319706-65319725 Msa0177960:intron 60.0%
TGGTCCTGAAGGGGGAGTTG+AGG - chr1_4:65320190-65320209 Msa0177960:three_prime_UTR 60.0%
TGGCTCAGGTGGCATCCAAG+AGG - chr1_4:65320287-65320306 Msa0177960:intron 60.0%
! CACGCTGGTAGTGTGACCTG+TGG - chr1_4:65320395-65320414 Msa0177960:intron 60.0%
TTGCTCACTCACCCTGCCAG+GGG + chr1_4:65321155-65321174 None:intergenic 60.0%
CTTTGCTCACTCACCCTGCC+AGG + chr1_4:65321157-65321176 None:intergenic 60.0%
CTGGCAGGGTGAGTGAGCAA+AGG - chr1_4:65321155-65321174 Msa0177960:intron 60.0%
TTTATGGAGCCCTCCGCCCA+TGG - chr1_4:65322340-65322359 Msa0177960:intron 60.0%
AAGAGGGTTCCATGGGCGGA+GGG + chr1_4:65322352-65322371 None:intergenic 60.0%
AGACTATTTGGGCGGGGAGG+GGG - chr1_4:65322511-65322530 Msa0177960:intron 60.0%
GGTTCCTGGGCTGCAATTGG+AGG - chr1_4:65324906-65324925 Msa0177960:intron 60.0%
CATGCCTCCAATTGCAGCCC+AGG + chr1_4:65324913-65324932 None:intergenic 60.0%
CTGGGCTGCAATTGGAGGCA+TGG - chr1_4:65324911-65324930 Msa0177960:intron 60.0%
AGGAACGCCCGCTGTCCTAA+AGG + chr1_4:65325673-65325692 None:intergenic 60.0%
GAGAATGGAGACGACGGCGG+CGG + chr1_4:65318693-65318712 None:intergenic 65.0%
CCGCCGTCGTCTCCATTCTC+AGG - chr1_4:65318693-65318712 Msa0177960:three_prime_UTR 65.0%
GGAGGATCAGGGCCACCATC+TGG + chr1_4:65319201-65319220 None:intergenic 65.0%
! GATGGTGGCCCTGATCCTCC+TGG - chr1_4:65319201-65319220 Msa0177960:intron 65.0%
GAGAGCCGCCAGGAGGATCA+GGG + chr1_4:65319212-65319231 None:intergenic 65.0%
!! GGTGATGGTGGTGGTGGTGG+TGG - chr1_4:65319346-65319365 Msa0177960:intron 65.0%
!! GATGGTGGTGGTGGTGGTGG+TGG - chr1_4:65319349-65319368 Msa0177960:intron 65.0%
TGCTCACTCACCCTGCCAGG+GGG + chr1_4:65321154-65321173 None:intergenic 65.0%
CAAGAGGGTTCCATGGGCGG+AGG + chr1_4:65322353-65322372 None:intergenic 65.0%
GGTGGCCCTGATCCTCCTGG+CGG - chr1_4:65319204-65319223 Msa0177960:intron 70.0%
GGAGAGCCGCCAGGAGGATC+AGG + chr1_4:65319213-65319232 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_4:65319352-65319371 Msa0177960:intron 70.0%
CGACGGCGGCGGCTGCTGTA+TGG + chr1_4:65318682-65318701 None:intergenic 75.0%
GGATCGGGAGAGCCGCCAGG+AGG + chr1_4:65319219-65319238 None:intergenic 75.0%
CCTGGATCGGGAGAGCCGCC+AGG + chr1_4:65319222-65319241 None:intergenic 75.0%
CCTGGCGGCTCTCCCGATCC+AGG - chr1_4:65319219-65319238 Msa0177960:intron 75.0%
GGCGGCTCTCCCGATCCAGG+TGG - chr1_4:65319222-65319241 Msa0177960:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65318606 65325920 65318606 ID=Msa0177960;Name=Msa0177960
chr1_4 mRNA 65318606 65325920 65318606 ID=Msa0177960-mRNA-1;Parent=Msa0177960;Name=Msa0177960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.9|0.81|1|1|0.90|11|1764|66
chr1_4 exon 65318606 65319169 65318606 ID=Msa0177960-mRNA-1:exon:21245;Parent=Msa0177960-mRNA-1
chr1_4 exon 65319534 65319621 65319534 ID=Msa0177960-mRNA-1:exon:21244;Parent=Msa0177960-mRNA-1
chr1_4 exon 65320182 65320240 65320182 ID=Msa0177960-mRNA-1:exon:21243;Parent=Msa0177960-mRNA-1
chr1_4 exon 65321004 65321119 65321004 ID=Msa0177960-mRNA-1:exon:21242;Parent=Msa0177960-mRNA-1
chr1_4 exon 65323918 65324001 65323918 ID=Msa0177960-mRNA-1:exon:21241;Parent=Msa0177960-mRNA-1
chr1_4 exon 65324092 65324239 65324092 ID=Msa0177960-mRNA-1:exon:21240;Parent=Msa0177960-mRNA-1
chr1_4 exon 65324315 65324457 65324315 ID=Msa0177960-mRNA-1:exon:21239;Parent=Msa0177960-mRNA-1
chr1_4 exon 65324739 65324858 65324739 ID=Msa0177960-mRNA-1:exon:21238;Parent=Msa0177960-mRNA-1
chr1_4 exon 65325099 65325200 65325099 ID=Msa0177960-mRNA-1:exon:21237;Parent=Msa0177960-mRNA-1
chr1_4 exon 65325286 65325717 65325286 ID=Msa0177960-mRNA-1:exon:21236;Parent=Msa0177960-mRNA-1
chr1_4 exon 65325812 65325920 65325812 ID=Msa0177960-mRNA-1:exon:21235;Parent=Msa0177960-mRNA-1
chr1_4 CDS 65325812 65325920 65325812 ID=Msa0177960-mRNA-1:cds;Parent=Msa0177960-mRNA-1
chr1_4 CDS 65325626 65325717 65325626 ID=Msa0177960-mRNA-1:cds;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65325286 65325625 65325286 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65325099 65325200 65325099 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65324739 65324858 65324739 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65324315 65324457 65324315 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65324092 65324239 65324092 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65323918 65324001 65323918 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65321004 65321119 65321004 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65320182 65320240 65320182 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65319534 65319621 65319534 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
chr1_4 three_prime_UTR 65318606 65319169 65318606 ID=Msa0177960-mRNA-1:three_prime_utr;Parent=Msa0177960-mRNA-1
Gene Sequence

>Msa0177960

ATGGCAAATATTAACCTCCGTGTTATTTTAGACGCCAACCTGAAAATCCATTCATTCAGTGGATTGAACACTACCATACAGCAGCCGCCGCCGTCGTCTCCATTCTCAGGTTTCCAAATTCCACTTAATTCACAGACACTCTTGTTGCTTGCTTTTCCCACTGCTTCATATTCTTCTCCTTTCCAACTTCTACAAAGCTGA

Protein sequence

>Msa0177960

MANINLRVILDANLKIHSFSGLNTTIQQPPPSSPFSGFQIPLNSQTLLLLAFPTASYSSPFQLLQS*