AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217670 MtrunA17_Chr2g0319561 100.000 114 0 0 1 114 1 114 1.32e-82 236
Msa0217670 MtrunA17_Chr4g0024171 87.719 114 13 1 1 114 1 113 2.92e-72 210
Msa0217670 MtrunA17_Chr3g0098971 77.193 114 24 1 1 114 1 112 3.05e-60 180
Msa0217670 MtrunA17_Chr5g0444201 72.973 111 28 1 4 114 2 110 1.47e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217670 AT4G27130.1 86.842 114 14 1 1 114 1 113 1.01e-71 209
Msa0217670 AT5G54760.2 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0217670 AT5G54760.4 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0217670 AT5G54760.3 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0217670 AT5G54760.1 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0217670 AT1G54290.1 85.088 114 16 1 1 114 1 113 2.56e-70 206
Msa0217670 AT5G54940.1 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0217670 AT5G54940.3 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0217670 AT5G54940.2 74.561 114 27 1 1 114 1 112 3.07e-58 175

Find 53 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGGGGCATTCTATTT+TGG 0.190968 2_1:+64634709 Msa0217670:five_prime_UTR
TTCGTTGAGATTGCGTTGTT+TGG 0.226356 2_1:-64633628 None:intergenic
AAGAATAGAAACCCTAAAAT+TGG 0.267545 2_1:-64633672 None:intergenic
AATGCTGAGGACGCCGGTGC+TGG 0.285317 2_1:+64635729 Msa0217670:CDS
AAGGAGCATATTAAAATTCA+TGG 0.292939 2_1:+64637017 Msa0217670:CDS
ACAAGTGTTAAAGTTGTATC+TGG 0.320511 2_1:+64637061 Msa0217670:three_prime_UTR
TTCGCTGCTGTATACGAATA+TGG 0.326573 2_1:-64635770 None:intergenic
ATTCATTACCTGGACTAAAA+AGG 0.327921 2_1:-64636039 None:intergenic
AATTATAGGTTTGAGCTATC+TGG 0.330296 2_1:+64634688 Msa0217670:intron
ACAGTTGTGATGCAGTATTA+TGG 0.339469 2_1:+64637147 Msa0217670:three_prime_UTR
TCGTTGAGATTGCGTTGTTT+GGG 0.354219 2_1:-64633627 None:intergenic
CCTGTCCTTGCTCTGGGTCC+TGG 0.375764 2_1:-64635899 None:intergenic
GGCATCTGAAATCTTGAATC+TGG 0.385123 2_1:-64637292 None:intergenic
CATTTAACATTTCAGATGCT+TGG 0.412230 2_1:+64637232 Msa0217670:three_prime_UTR
TTCAAGATTTCAGATGCCTT+TGG 0.413205 2_1:+64637297 Msa0217670:three_prime_UTR
AGACATACCTGTCCTTGCTC+TGG 0.415595 2_1:-64635906 None:intergenic
TACAACAAAACTCCTTCTTA+AGG 0.416659 2_1:-64635863 None:intergenic
TATCTGGCTCATTTCGAGTT+GGG 0.430050 2_1:+64637077 Msa0217670:three_prime_UTR
ACGCATCGAAACCCTAATCT+AGG 0.432304 2_1:+64633715 Msa0217670:five_prime_UTR
ATTCATGGTTTCTGAGCAGC+TGG 0.441134 2_1:+64637032 Msa0217670:exon
TTGTGGAATTTCTTGTGGTC+TGG 0.441805 2_1:+64637113 Msa0217670:three_prime_UTR
AGGTTTGAGCTATCTGGTGG+TGG 0.442246 2_1:+64634694 Msa0217670:intron
CGAAACCCTAATCTAGGATC+AGG 0.444875 2_1:+64633721 Msa0217670:five_prime_UTR
GATTTCAGATGCCTTTGGCT+TGG 0.455364 2_1:+64637302 Msa0217670:three_prime_UTR
GACATACCTGTCCTTGCTCT+GGG 0.463686 2_1:-64635905 None:intergenic
TGAATTCTTTCTTCAATCCC+TGG 0.465760 2_1:-64635818 None:intergenic
AGAAACCCTAAAATTGGATA+AGG 0.468111 2_1:-64633666 None:intergenic
GTGTAGGTTATTCAACTTCA+AGG 0.470369 2_1:+64635993 Msa0217670:intron
TTGTAATGGTACAGTTGTCC+AGG 0.470439 2_1:+64635881 Msa0217670:CDS
ATGCTGAGGACGCCGGTGCT+GGG 0.477491 2_1:+64635730 Msa0217670:CDS
TCAGCATTTGCCTCAGCAAA+AGG 0.478903 2_1:-64635714 None:intergenic
ATTCGTATACAGCAGCGAAA+TGG 0.491023 2_1:+64635774 Msa0217670:CDS
ATGGAATTTATGACATTATG+TGG 0.492829 2_1:+64637166 Msa0217670:three_prime_UTR
TGATTGATTAACAATTAAAG+AGG 0.494724 2_1:+64637334 Msa0217670:three_prime_UTR
GGTTTGAGCTATCTGGTGGT+GGG 0.505983 2_1:+64634695 Msa0217670:intron
GTATCTGGCTCATTTCGAGT+TGG 0.505995 2_1:+64637076 Msa0217670:three_prime_UTR
CGCCGGTGCTGGGTCATCAA+AGG 0.522725 2_1:+64635740 Msa0217670:CDS
TGTGATTGTGGAATTTCTTG+TGG 0.543118 2_1:+64637108 Msa0217670:three_prime_UTR
GTTTGAGCTATCTGGTGGTG+GGG 0.543960 2_1:+64634696 Msa0217670:five_prime_UTR
ACAGGCTGGAATCGTGAAGA+AGG 0.545416 2_1:+64636998 Msa0217670:intron
AAAAGCTTGACAACTGTCCA+GGG 0.558576 2_1:+64635801 Msa0217670:CDS
GCTTCAATAATATGTATCAA+AGG 0.574990 2_1:+64637194 Msa0217670:three_prime_UTR
TTCAACTTCAAGGCGATCAG+AGG 0.577444 2_1:+64636003 Msa0217670:CDS
GAGGCAAATGCTGAGGACGC+CGG 0.578099 2_1:+64635723 Msa0217670:CDS
CTCCTTTGATGACCCAGCAC+CGG 0.583753 2_1:-64635742 None:intergenic
GATTCTGAAAGACCTTAAGA+AGG 0.584832 2_1:+64635851 Msa0217670:CDS
CCAGGACCCAGAGCAAGGAC+AGG 0.587475 2_1:+64635899 Msa0217670:CDS
TGGGTATATATATGTGATTG+TGG 0.594702 2_1:+64637096 Msa0217670:three_prime_UTR
CAAAACTTGTTCCAAGCCAA+AGG 0.597344 2_1:-64637313 None:intergenic
GCACAAATTCCTACTGCCTA+CGG 0.609588 2_1:+64634759 Msa0217670:CDS
TATAGGTTTGAGCTATCTGG+TGG 0.628578 2_1:+64634691 Msa0217670:intron
GTTGTCCAGGACCCAGAGCA+AGG 0.630590 2_1:+64635894 Msa0217670:CDS
TCCAACTTACCGTAGGCAGT+AGG 0.690363 2_1:-64634768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGTAAATGAAATTT+GGG + chr2_1:64634155-64634174 Msa0217670:intron 10.0%
!!! TTTGAATTTTTATTATCTTT+AGG + chr2_1:64634957-64634976 Msa0217670:intron 10.0%
!! GTTATAAGTAAAAAAAAATA+GGG - chr2_1:64635193-64635212 None:intergenic 10.0%
!! GTTATATTGTAAATGAAATT+TGG + chr2_1:64634154-64634173 Msa0217670:intron 15.0%
!! TATATTGTAAATGAAATTTG+GGG + chr2_1:64634156-64634175 Msa0217670:intron 15.0%
!!! ATAATTTGTGTATCAATTTT+AGG + chr2_1:64634197-64634216 Msa0217670:intron 15.0%
!! AATAAGAAACAATTAATTCA+CGG - chr2_1:64634236-64634255 None:intergenic 15.0%
!! AAGATATTGTAAATGAAATT+TGG + chr2_1:64634259-64634278 Msa0217670:intron 15.0%
!! AGATATTGTAAATGAAATTT+GGG + chr2_1:64634260-64634279 Msa0217670:intron 15.0%
!!! TTGTAAATGTAAATGAATTT+TGG + chr2_1:64634370-64634389 Msa0217670:intron 15.0%
!!! TGTAAATGTAAATGAATTTT+GGG + chr2_1:64634371-64634390 Msa0217670:intron 15.0%
!!! AATGTTTTGATTCTAATTAT+AGG + chr2_1:64634674-64634693 Msa0217670:intron 15.0%
!! CGTTATAAGTAAAAAAAAAT+AGG - chr2_1:64635194-64635213 None:intergenic 15.0%
!!! TTTTCTAAAATAGTTTTTTC+TGG + chr2_1:64635322-64635341 Msa0217670:intron 15.0%
!!! TTTCTAAAATAGTTTTTTCT+GGG + chr2_1:64635323-64635342 Msa0217670:intron 15.0%
!!! GTTTTTAATGTTTATACTTT+GGG + chr2_1:64635370-64635389 Msa0217670:intron 15.0%
!!! CTTCAAATAACATTTTTTTA+TGG + chr2_1:64635971-64635990 Msa0217670:intron 15.0%
!! AGAAAATATCAAAAGTAAAA+CGG - chr2_1:64636170-64636189 None:intergenic 15.0%
!! TAAACATAAAATAATGTCAA+AGG - chr2_1:64636397-64636416 None:intergenic 15.0%
!! TTTACCCATAAATTTATATT+TGG + chr2_1:64636690-64636709 Msa0217670:intron 15.0%
!! AAATTTCGATTTAGAGAAAA+AGG - chr2_1:64633765-64633784 None:intergenic 20.0%
!!! AATTTTCGCGTTTTAATTTT+AGG + chr2_1:64633780-64633799 Msa0217670:intron 20.0%
!!! ATTTTCGCGTTTTAATTTTA+GGG + chr2_1:64633781-64633800 Msa0217670:intron 20.0%
!!! TTCAATTTGCCTAAATTTTA+AGG + chr2_1:64633830-64633849 Msa0217670:intron 20.0%
!!! TCAATTTGCCTAAATTTTAA+GGG + chr2_1:64633831-64633850 Msa0217670:intron 20.0%
!! AATAAAACCCCTTAAAATTT+AGG - chr2_1:64633842-64633861 None:intergenic 20.0%
!!! AAATTTTAAGGGGTTTTATT+TGG + chr2_1:64633842-64633861 Msa0217670:intron 20.0%
!!! TTGTTAATTTTGTGAAGTTT+CGG + chr2_1:64633918-64633937 Msa0217670:intron 20.0%
!!! AGCTGTATATTTGAATTTTT+TGG + chr2_1:64634027-64634046 Msa0217670:intron 20.0%
!!! GCTGTATATTTGAATTTTTT+GGG + chr2_1:64634028-64634047 Msa0217670:intron 20.0%
!!! TTTTTTGGGTATCAATTTTT+AGG + chr2_1:64634042-64634061 Msa0217670:intron 20.0%
!! AAATTGATACCCAAAAAATT+GGG - chr2_1:64634040-64634059 None:intergenic 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_1:64634157-64634176 Msa0217670:intron 20.0%
!! GATATTGTAAATGAAATTTG+GGG + chr2_1:64634261-64634280 Msa0217670:intron 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_1:64634157-64634176 Msa0217670:intron 20.0%
!! TTGTAAAGAAATATTGTGAA+TGG + chr2_1:64634292-64634311 Msa0217670:intron 20.0%
!!! AATATTGTGAATGGATTTTT+AGG + chr2_1:64634301-64634320 Msa0217670:intron 20.0%
!!! GTAAATGTAAATGAATTTTG+GGG + chr2_1:64634372-64634391 Msa0217670:intron 20.0%
!!! TAAATGTAAATGAATTTTGG+GGG + chr2_1:64634373-64634392 Msa0217670:intron 20.0%
!!! GATAGATATATTGTTTTTGT+TGG + chr2_1:64634579-64634598 Msa0217670:intron 20.0%
!! CTGAATTATAATAACAATCT+CGG - chr2_1:64634652-64634671 None:intergenic 20.0%
!!! ATATTGCTTTTACTTTTACT+TGG + chr2_1:64635155-64635174 Msa0217670:intron 20.0%
!!! TTCTAAAATAGTTTTTTCTG+GGG + chr2_1:64635324-64635343 Msa0217670:intron 20.0%
!!! GGTTTTTAATGTTTATACTT+TGG + chr2_1:64635369-64635388 Msa0217670:intron 20.0%
!!! TTTGATCTGAAATAGTATTT+TGG + chr2_1:64635465-64635484 Msa0217670:intron 20.0%
!!! TTGATCTGAAATAGTATTTT+GGG + chr2_1:64635466-64635485 Msa0217670:intron 20.0%
!!! AAATTGGATTTTTAAAGCTT+AGG + chr2_1:64635505-64635524 Msa0217670:intron 20.0%
!!! ATAACATTTTTTTATGGTGT+AGG + chr2_1:64635977-64635996 Msa0217670:intron 20.0%
!! GTAAAACGGAAAAATAAAAA+GGG - chr2_1:64636156-64636175 None:intergenic 20.0%
!! AGTAAAACGGAAAAATAAAA+AGG - chr2_1:64636157-64636176 None:intergenic 20.0%
!!! TTTACTTTTGATATTTTCTG+TGG + chr2_1:64636171-64636190 Msa0217670:intron 20.0%
!!! AAAAAGAAGTCTGTTTTTAA+AGG + chr2_1:64636262-64636281 Msa0217670:intron 20.0%
!!! GTAAAAATAGTTGATATTCT+AGG - chr2_1:64636489-64636508 None:intergenic 20.0%
!!! ATCAACTATTTTTACTAAAC+AGG + chr2_1:64636494-64636513 Msa0217670:intron 20.0%
!!! TCAACTATTTTTACTAAACA+GGG + chr2_1:64636495-64636514 Msa0217670:intron 20.0%
!! TCCACCAAATATAAATTTAT+GGG - chr2_1:64636697-64636716 None:intergenic 20.0%
!! ATCCACCAAATATAAATTTA+TGG - chr2_1:64636698-64636717 None:intergenic 20.0%
!! TGATTGATTAACAATTAAAG+AGG + chr2_1:64637334-64637353 Msa0217670:three_prime_UTR 20.0%
! AAGAATAGAAACCCTAAAAT+TGG - chr2_1:64633675-64633694 None:intergenic 25.0%
! GGCAAATTGAAATCAAAATT+AGG - chr2_1:64633821-64633840 None:intergenic 25.0%
!! CAATTTGCCTAAATTTTAAG+GGG + chr2_1:64633832-64633851 Msa0217670:intron 25.0%
! CTAAATATCAACAAGAGAAA+CGG - chr2_1:64633894-64633913 None:intergenic 25.0%
!! TGTTAATTTTGTGAAGTTTC+GGG + chr2_1:64633919-64633938 Msa0217670:intron 25.0%
!! AAGCTTTTATCTTTGAATCA+TGG + chr2_1:64633997-64634016 Msa0217670:intron 25.0%
! GAAATTGATACCCAAAAAAT+TGG - chr2_1:64634093-64634112 None:intergenic 25.0%
!!! TTTTTTGGGTATCAATTTCT+AGG + chr2_1:64634094-64634113 Msa0217670:intron 25.0%
! ATAGAAGAATTTCTCATTTC+TGG - chr2_1:64635064-64635083 None:intergenic 25.0%
! TAAAAGCAATATCAGTAAGA+AGG - chr2_1:64635147-64635166 None:intergenic 25.0%
! AAAAAATTCTGTGTGATTCT+TGG - chr2_1:64635305-64635324 None:intergenic 25.0%
! TTAAGCATCTTGTTCAATAA+TGG - chr2_1:64635421-64635440 None:intergenic 25.0%
! TCAAAGTTATGTACAATGAT+TGG - chr2_1:64635450-64635469 None:intergenic 25.0%
!!! TGATCTGAAATAGTATTTTG+GGG + chr2_1:64635467-64635486 Msa0217670:intron 25.0%
! AGATGAAGAATAGAAATAGA+TGG + chr2_1:64635596-64635615 Msa0217670:intron 25.0%
!! AATGTTATTTGAAGCAACAA+GGG - chr2_1:64635965-64635984 None:intergenic 25.0%
!! AAATGTTATTTGAAGCAACA+AGG - chr2_1:64635966-64635985 None:intergenic 25.0%
! TTAATGAAAATAGAGCTGTT+TGG + chr2_1:64636321-64636340 Msa0217670:intron 25.0%
! TTATTTGAATTAAGCATAGC+AGG - chr2_1:64636360-64636379 None:intergenic 25.0%
! ACCCATAAATTTATATTTGG+TGG + chr2_1:64636693-64636712 Msa0217670:intron 25.0%
! TATTCATGTCATTCATCATA+TGG + chr2_1:64636844-64636863 Msa0217670:intron 25.0%
!! AAGGAGCATATTAAAATTCA+TGG + chr2_1:64637017-64637036 Msa0217670:CDS 25.0%
! ATGGAATTTATGACATTATG+TGG + chr2_1:64637166-64637185 Msa0217670:three_prime_UTR 25.0%
! GCTTCAATAATATGTATCAA+AGG + chr2_1:64637194-64637213 Msa0217670:three_prime_UTR 25.0%
! ATCGTTCCTTATCCAATTTT+AGG + chr2_1:64633660-64633679 Msa0217670:five_prime_UTR 30.0%
! TCGTTCCTTATCCAATTTTA+GGG + chr2_1:64633661-64633680 Msa0217670:five_prime_UTR 30.0%
AGAAACCCTAAAATTGGATA+AGG - chr2_1:64633669-64633688 None:intergenic 30.0%
! TTTTACCTGATCCTAGATTA+GGG - chr2_1:64633729-64633748 None:intergenic 30.0%
! ATTTTACCTGATCCTAGATT+AGG - chr2_1:64633730-64633749 None:intergenic 30.0%
! ATTTTTGAACGAGTAAGTCT+TGG + chr2_1:64633953-64633972 Msa0217670:intron 30.0%
! TTTTTGAACGAGTAAGTCTT+GGG + chr2_1:64633954-64633973 Msa0217670:intron 30.0%
!!! GGTATCAATTTTTAGGTGTT+TGG + chr2_1:64634049-64634068 Msa0217670:intron 30.0%
! TTTAGGTGTTTGGTTTAACA+TGG + chr2_1:64634059-64634078 Msa0217670:intron 30.0%
!!! TGGTGTAAATCCCAATTTTT+TGG + chr2_1:64634079-64634098 Msa0217670:intron 30.0%
!!! GGTGTAAATCCCAATTTTTT+GGG + chr2_1:64634080-64634099 Msa0217670:intron 30.0%
! TTAAAAGCACAGCTAAACAT+GGG - chr2_1:64634448-64634467 None:intergenic 30.0%
GAAATTATCCATGCTTATTG+TGG + chr2_1:64634511-64634530 Msa0217670:intron 30.0%
AATTATAGGTTTGAGCTATC+TGG + chr2_1:64634688-64634707 Msa0217670:intron 30.0%
TCAATTATACTGTGTACTGT+TGG + chr2_1:64634885-64634904 Msa0217670:intron 30.0%
CAATTATACTGTGTACTGTT+GGG + chr2_1:64634886-64634905 Msa0217670:intron 30.0%
GAATTTACTAGTCAATTGTC+AGG - chr2_1:64634998-64635017 None:intergenic 30.0%
ATATGATATATGACTCCTGT+GGG + chr2_1:64635669-64635688 Msa0217670:intron 30.0%
! AATTTTAGATCCTTTTGCTG+AGG + chr2_1:64635704-64635723 Msa0217670:intron 30.0%
TACAACAAAACTCCTTCTTA+AGG - chr2_1:64635866-64635885 None:intergenic 30.0%
!!! AAGAAGGAGTTTTGTTGTAA+TGG + chr2_1:64635867-64635886 Msa0217670:CDS 30.0%
! ATGTTATTTGAAGCAACAAG+GGG - chr2_1:64635964-64635983 None:intergenic 30.0%
ATTCATTACCTGGACTAAAA+AGG - chr2_1:64636042-64636061 None:intergenic 30.0%
AATGAATGACTTCACATCTT+TGG + chr2_1:64636055-64636074 Msa0217670:intron 30.0%
!! ATAAAAAGGGTACTTAACCA+GGG - chr2_1:64636143-64636162 None:intergenic 30.0%
!! AATAAAAAGGGTACTTAACC+AGG - chr2_1:64636144-64636163 None:intergenic 30.0%
TATCTAAATCCGTTCTATAG+AGG - chr2_1:64636726-64636745 None:intergenic 30.0%
GATTTAGATACGTAAATCAC+TGG + chr2_1:64636736-64636755 Msa0217670:intron 30.0%
AGAATATAACAGATCGTTGT+AGG - chr2_1:64636770-64636789 None:intergenic 30.0%
AATAAACGTTTGTCACTACA+TGG - chr2_1:64636828-64636847 None:intergenic 30.0%
ACAAGTGTTAAAGTTGTATC+TGG + chr2_1:64637061-64637080 Msa0217670:three_prime_UTR 30.0%
TGGGTATATATATGTGATTG+TGG + chr2_1:64637096-64637115 Msa0217670:three_prime_UTR 30.0%
CATTTAACATTTCAGATGCT+TGG + chr2_1:64637232-64637251 Msa0217670:three_prime_UTR 30.0%
!! TGAATGGATTTTTAGGCATG+TGG + chr2_1:64634308-64634327 Msa0217670:intron 35.0%
! CTTAAAAGCACAGCTAAACA+TGG - chr2_1:64634449-64634468 None:intergenic 35.0%
!! GTGCTTTTAAGAGTTTGTGA+CGG + chr2_1:64634458-64634477 Msa0217670:intron 35.0%
!! TGCTTTTAAGAGTTTGTGAC+GGG + chr2_1:64634459-64634478 Msa0217670:intron 35.0%
TTATCCATGCTTATTGTGGT+TGG + chr2_1:64634515-64634534 Msa0217670:intron 35.0%
TATCCATGCTTATTGTGGTT+GGG + chr2_1:64634516-64634535 Msa0217670:intron 35.0%
TTCATGATATGCAGTCATTC+TGG + chr2_1:64634842-64634861 Msa0217670:intron 35.0%
! ATATGCAGTCATTCTGGAAA+GGG + chr2_1:64634848-64634867 Msa0217670:intron 35.0%
!! AATCTGAGACAGCATTTTCA+AGG - chr2_1:64634914-64634933 None:intergenic 35.0%
!! CATTTCTGGAGTTTAGTTGA+AGG - chr2_1:64635119-64635138 None:intergenic 35.0%
! TGCTTAACGTGGTTTAAGAT+TGG + chr2_1:64635347-64635366 Msa0217670:intron 35.0%
! GCTTAACGTGGTTTAAGATT+GGG + chr2_1:64635348-64635367 Msa0217670:intron 35.0%
!!! AATAGTATTTTGGGGTCTTG+AGG + chr2_1:64635475-64635494 Msa0217670:intron 35.0%
! GTCTTGAGGTGGTTTAAAAT+TGG + chr2_1:64635489-64635508 Msa0217670:intron 35.0%
TAGGATCTTAACGTTTGTGA+AGG + chr2_1:64635524-64635543 Msa0217670:intron 35.0%
AGGATCTTAACGTTTGTGAA+GGG + chr2_1:64635525-64635544 Msa0217670:intron 35.0%
TACATAATGAATGCTGTGTG+AGG - chr2_1:64635577-64635596 None:intergenic 35.0%
GATATGATATATGACTCCTG+TGG + chr2_1:64635668-64635687 Msa0217670:intron 35.0%
TGAATTCTTTCTTCAATCCC+TGG - chr2_1:64635821-64635840 None:intergenic 35.0%
! GATTCTGAAAGACCTTAAGA+AGG + chr2_1:64635851-64635870 Msa0217670:CDS 35.0%
GTGTAGGTTATTCAACTTCA+AGG + chr2_1:64635993-64636012 Msa0217670:intron 35.0%
ATGTGAAGTCATTCATTACC+TGG - chr2_1:64636052-64636071 None:intergenic 35.0%
AAGGCATATGCTTAGCTTAT+TGG + chr2_1:64636281-64636300 Msa0217670:intron 35.0%
! TTTGTTAGCTTCTCAGCAAT+AGG + chr2_1:64636450-64636469 Msa0217670:intron 35.0%
!!! TGTGTTTTTTTCCTCCTGAT+TGG + chr2_1:64636524-64636543 Msa0217670:intron 35.0%
!!! GTGTTTTTTTCCTCCTGATT+GGG + chr2_1:64636525-64636544 Msa0217670:intron 35.0%
TATTCATGCCTTTCATTGCA+TGG + chr2_1:64636887-64636906 Msa0217670:intron 35.0%
! TCAGTTTTCCATGCAATGAA+AGG - chr2_1:64636898-64636917 None:intergenic 35.0%
TTCAAATTCACAAGTGCAGA+GGG - chr2_1:64636979-64636998 None:intergenic 35.0%
TGTGATTGTGGAATTTCTTG+TGG + chr2_1:64637108-64637127 Msa0217670:three_prime_UTR 35.0%
ACAGTTGTGATGCAGTATTA+TGG + chr2_1:64637147-64637166 Msa0217670:three_prime_UTR 35.0%
TTCAAGATTTCAGATGCCTT+TGG + chr2_1:64637297-64637316 Msa0217670:three_prime_UTR 35.0%
!! GGTTTTATGACCTAAAACAC+TGG + chr2_1:64637355-64637374 Msa0217670:three_prime_UTR 35.0%
TCGTTGAGATTGCGTTGTTT+GGG - chr2_1:64633630-64633649 None:intergenic 40.0%
TTCGTTGAGATTGCGTTGTT+TGG - chr2_1:64633631-64633650 None:intergenic 40.0%
TATAGGTTTGAGCTATCTGG+TGG + chr2_1:64634691-64634710 Msa0217670:intron 40.0%
ATAGAGTTCCAACTTACCGT+AGG - chr2_1:64634778-64634797 None:intergenic 40.0%
! GATATGCAGTCATTCTGGAA+AGG + chr2_1:64634847-64634866 Msa0217670:intron 40.0%
GTAAGAAGGCAACTCATTTC+TGG - chr2_1:64635133-64635152 None:intergenic 40.0%
!! TTGGGTTTTATCGTGTGTGA+AGG + chr2_1:64635388-64635407 Msa0217670:intron 40.0%
TTCGCTGCTGTATACGAATA+TGG - chr2_1:64635773-64635792 None:intergenic 40.0%
ATTCGTATACAGCAGCGAAA+TGG + chr2_1:64635774-64635793 Msa0217670:CDS 40.0%
AAAAAGCTTGACAACTGTCC+AGG + chr2_1:64635800-64635819 Msa0217670:CDS 40.0%
AAAAGCTTGACAACTGTCCA+GGG + chr2_1:64635801-64635820 Msa0217670:CDS 40.0%
TTGTAATGGTACAGTTGTCC+AGG + chr2_1:64635881-64635900 Msa0217670:CDS 40.0%
!! TGTGTCTACCTTTTTAGTCC+AGG + chr2_1:64636031-64636050 Msa0217670:CDS 40.0%
TACTTAACCAGGGAAACAGA+TGG - chr2_1:64636133-64636152 None:intergenic 40.0%
! TGTCTGAGATCAAGTTTCTC+TGG + chr2_1:64636214-64636233 Msa0217670:intron 40.0%
AGGAGGAAAAAAACACACTG+AGG - chr2_1:64636521-64636540 None:intergenic 40.0%
GTACAAGATCATTCCCAATC+AGG - chr2_1:64636541-64636560 None:intergenic 40.0%
ACTTATAGAGTTGCCTTTCC+CGG + chr2_1:64636650-64636669 Msa0217670:intron 40.0%
GGATGTATGCCTCTATAGAA+CGG + chr2_1:64636714-64636733 Msa0217670:intron 40.0%
GTTCAAATTCACAAGTGCAG+AGG - chr2_1:64636980-64636999 None:intergenic 40.0%
CTGCACTTGTGAATTTGAAC+AGG + chr2_1:64636980-64636999 Msa0217670:intron 40.0%
ACTTGTGAATTTGAACAGGC+TGG + chr2_1:64636984-64637003 Msa0217670:intron 40.0%
!! TATCTGGCTCATTTCGAGTT+GGG + chr2_1:64637077-64637096 Msa0217670:three_prime_UTR 40.0%
TTGTGGAATTTCTTGTGGTC+TGG + chr2_1:64637113-64637132 Msa0217670:three_prime_UTR 40.0%
! GGCATCTGAAATCTTGAATC+TGG - chr2_1:64637295-64637314 None:intergenic 40.0%
! CAAAACTTGTTCCAAGCCAA+AGG - chr2_1:64637316-64637335 None:intergenic 40.0%
ACGCATCGAAACCCTAATCT+AGG + chr2_1:64633715-64633734 Msa0217670:five_prime_UTR 45.0%
! CGAAACCCTAATCTAGGATC+AGG + chr2_1:64633721-64633740 Msa0217670:five_prime_UTR 45.0%
TTGCCCAACCACAATAAGCA+TGG - chr2_1:64634522-64634541 None:intergenic 45.0%
ACATTCCCCACCATGCTTAT+CGG + chr2_1:64634551-64634570 Msa0217670:intron 45.0%
GCACAAATTCCTACTGCCTA+CGG + chr2_1:64634759-64634778 Msa0217670:CDS 45.0%
GACAGACAACACGCATCAAT+AGG - chr2_1:64634807-64634826 None:intergenic 45.0%
!!! TTTTTCTGGGGTGCTTAACG+TGG + chr2_1:64635336-64635355 Msa0217670:intron 45.0%
!!! AGTATTTTGGGGTCTTGAGG+TGG + chr2_1:64635478-64635497 Msa0217670:intron 45.0%
TCAGCATTTGCCTCAGCAAA+AGG - chr2_1:64635717-64635736 None:intergenic 45.0%
! TTTTGCTGAGGCAAATGCTG+AGG + chr2_1:64635716-64635735 Msa0217670:CDS 45.0%
TTCAACTTCAAGGCGATCAG+AGG + chr2_1:64636003-64636022 Msa0217670:CDS 45.0%
GTGGCGTAATTTGATCTGAG+TGG + chr2_1:64636190-64636209 Msa0217670:intron 45.0%
CAAGATCATTCCCAATCAGG+AGG - chr2_1:64636538-64636557 None:intergenic 45.0%
ATAAGTGCCAACCTGCTCAA+AGG - chr2_1:64636636-64636655 None:intergenic 45.0%
CTTATAGAGTTGCCTTTCCC+GGG + chr2_1:64636651-64636670 Msa0217670:intron 45.0%
AAGACTGTTTACCCAAGTCC+CGG - chr2_1:64636672-64636691 None:intergenic 45.0%
TTCACAAGTGCAGAGGGATA+AGG - chr2_1:64636973-64636992 None:intergenic 45.0%
ATTCATGGTTTCTGAGCAGC+TGG + chr2_1:64637032-64637051 Msa0217670:exon 45.0%
! GTATCTGGCTCATTTCGAGT+TGG + chr2_1:64637076-64637095 Msa0217670:three_prime_UTR 45.0%
GATTTCAGATGCCTTTGGCT+TGG + chr2_1:64637302-64637321 Msa0217670:three_prime_UTR 45.0%
!! TTAAGAGTTTGTGACGGGCG+TGG + chr2_1:64634464-64634483 Msa0217670:intron 50.0%
CATTCCCCACCATGCTTATC+GGG + chr2_1:64634552-64634571 Msa0217670:intron 50.0%
ATTCCCCACCATGCTTATCG+GGG + chr2_1:64634553-64634572 Msa0217670:intron 50.0%
AGGTTTGAGCTATCTGGTGG+TGG + chr2_1:64634694-64634713 Msa0217670:intron 50.0%
GGTTTGAGCTATCTGGTGGT+GGG + chr2_1:64634695-64634714 Msa0217670:intron 50.0%
! GTTTGAGCTATCTGGTGGTG+GGG + chr2_1:64634696-64634715 Msa0217670:five_prime_UTR 50.0%
!!! GGTGGTGGGGCATTCTATTT+TGG + chr2_1:64634709-64634728 Msa0217670:five_prime_UTR 50.0%
TCCTACTGCCTACGGTAAGT+TGG + chr2_1:64634767-64634786 Msa0217670:intron 50.0%
TCCAACTTACCGTAGGCAGT+AGG - chr2_1:64634771-64634790 None:intergenic 50.0%
TATGACTCCTGTGGGATGTG+TGG + chr2_1:64635677-64635696 Msa0217670:intron 50.0%
ATTGTTGCCACACATCCCAC+AGG - chr2_1:64635687-64635706 None:intergenic 50.0%
GACATACCTGTCCTTGCTCT+GGG - chr2_1:64635908-64635927 None:intergenic 50.0%
AGACATACCTGTCCTTGCTC+TGG - chr2_1:64635909-64635928 None:intergenic 50.0%
CAGGGAAACAGATGGATCTC+AGG - chr2_1:64636125-64636144 None:intergenic 50.0%
CTGAGATCCATCTGTTTCCC+TGG + chr2_1:64636123-64636142 Msa0217670:intron 50.0%
AGACTGTTTACCCAAGTCCC+GGG - chr2_1:64636671-64636690 None:intergenic 50.0%
ACAGGCTGGAATCGTGAAGA+AGG + chr2_1:64636998-64637017 Msa0217670:intron 50.0%
TTCCCCACCATGCTTATCGG+GGG + chr2_1:64634554-64634573 Msa0217670:intron 55.0%
CTATCAGCCCCCGATAAGCA+TGG - chr2_1:64634564-64634583 None:intergenic 55.0%
! CTCCTTTGATGACCCAGCAC+CGG - chr2_1:64635745-64635764 None:intergenic 55.0%
TTCGCACCAGTCCTTTGAGC+AGG + chr2_1:64636622-64636641 Msa0217670:intron 55.0%
CACCAGTCCTTTGAGCAGGT+TGG + chr2_1:64636626-64636645 Msa0217670:intron 55.0%
TGCCAACCTGCTCAAAGGAC+TGG - chr2_1:64636631-64636650 None:intergenic 55.0%
AGTTGCCTTTCCCGGGACTT+GGG + chr2_1:64636658-64636677 Msa0217670:intron 55.0%
GTTTACCCAAGTCCCGGGAA+AGG - chr2_1:64636666-64636685 None:intergenic 55.0%
AGCCCCCGATAAGCATGGTG+GGG - chr2_1:64634559-64634578 None:intergenic 60.0%
CAGCCCCCGATAAGCATGGT+GGG - chr2_1:64634560-64634579 None:intergenic 60.0%
TCAGCCCCCGATAAGCATGG+TGG - chr2_1:64634561-64634580 None:intergenic 60.0%
GAGGCAAATGCTGAGGACGC+CGG + chr2_1:64635723-64635742 Msa0217670:CDS 60.0%
GTTGTCCAGGACCCAGAGCA+AGG + chr2_1:64635894-64635913 Msa0217670:CDS 60.0%
GAGTTGCCTTTCCCGGGACT+TGG + chr2_1:64636657-64636676 Msa0217670:intron 60.0%
AATGCTGAGGACGCCGGTGC+TGG + chr2_1:64635729-64635748 Msa0217670:CDS 65.0%
ATGCTGAGGACGCCGGTGCT+GGG + chr2_1:64635730-64635749 Msa0217670:CDS 65.0%
! CGCCGGTGCTGGGTCATCAA+AGG + chr2_1:64635740-64635759 Msa0217670:CDS 65.0%
! CCTGTCCTTGCTCTGGGTCC+TGG - chr2_1:64635902-64635921 None:intergenic 65.0%
CCAGGACCCAGAGCAAGGAC+AGG + chr2_1:64635899-64635918 Msa0217670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64633627 64637384 64633627 ID=Msa0217670;Name=Msa0217670
chr2_1 mRNA 64633627 64637384 64633627 ID=Msa0217670-mRNA-1;Parent=Msa0217670;Name=Msa0217670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=164|1|1|1|0.25|0.4|5|338|114
chr2_1 exon 64633627 64633742 64633627 ID=Msa0217670-mRNA-1:exon:17932;Parent=Msa0217670-mRNA-1
chr2_1 exon 64634696 64634780 64634696 ID=Msa0217670-mRNA-1:exon:17933;Parent=Msa0217670-mRNA-1
chr2_1 exon 64635712 64635920 64635712 ID=Msa0217670-mRNA-1:exon:17934;Parent=Msa0217670-mRNA-1
chr2_1 exon 64635999 64636052 64635999 ID=Msa0217670-mRNA-1:exon:17935;Parent=Msa0217670-mRNA-1
chr2_1 exon 64637002 64637384 64637002 ID=Msa0217670-mRNA-1:exon:17936;Parent=Msa0217670-mRNA-1
chr2_1 five_prime_UTR 64633627 64633742 64633627 ID=Msa0217670-mRNA-1:five_prime_utr;Parent=Msa0217670-mRNA-1
chr2_1 five_prime_UTR 64634696 64634743 64634696 ID=Msa0217670-mRNA-1:five_prime_utr;Parent=Msa0217670-mRNA-1
chr2_1 CDS 64634744 64634780 64634744 ID=Msa0217670-mRNA-1:cds;Parent=Msa0217670-mRNA-1
chr2_1 CDS 64635712 64635920 64635712 ID=Msa0217670-mRNA-1:cds;Parent=Msa0217670-mRNA-1
chr2_1 CDS 64635999 64636052 64635999 ID=Msa0217670-mRNA-1:cds;Parent=Msa0217670-mRNA-1
chr2_1 CDS 64637002 64637046 64637002 ID=Msa0217670-mRNA-1:cds;Parent=Msa0217670-mRNA-1
chr2_1 three_prime_UTR 64637047 64637384 64637047 ID=Msa0217670-mRNA-1:three_prime_utr;Parent=Msa0217670-mRNA-1
Gene Sequence

>Msa0217670

ATGTCTGAATTAGACGCACAAATTCCTACTGCCTACGATCCTTTTGCTGAGGCAAATGCTGAGGACGCCGGTGCTGGGTCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGAAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTGAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAAAATGTGTCTACCTTTTTAGTCCAGGCTGGAATCGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA

Protein sequence

>Msa0217670

MSELDAQIPTAYDPFAEANAEDAGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF*