Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912600 | XP_003619026.1 | 87.368 | 190 | 12 | 1 | 1 | 178 | 1 | 190 | 3.18e-98 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912600 | sp|Q9FR62|P23A_BRANA | 55.901 | 161 | 56 | 3 | 1 | 149 | 1 | 158 | 2.30e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678860 | Msa0912600 | 0.802048 | 6.749505e-49 | -8.615850e-47 |
| Msa0709760 | Msa0912600 | 0.805713 | 1.168571e-49 | -8.615850e-47 |
| Msa0755340 | Msa0912600 | 0.804065 | 2.583186e-49 | -8.615850e-47 |
| Msa0434940 | Msa0912600 | 0.802751 | 4.836045e-49 | -8.615850e-47 |
| Msa0912600 | Msa0949960 | 0.808226 | 3.436686e-50 | -8.615850e-47 |
| Msa0912600 | Msa1018050 | 0.811083 | 8.357635e-51 | -8.615850e-47 |
| Msa0912600 | Msa1160570 | 0.800056 | 1.723536e-48 | -8.615850e-47 |
| Msa0912600 | Msa1243170 | 0.803174 | 3.954274e-49 | -8.615850e-47 |
| Msa0912600 | Msa1284520 | 0.806971 | 6.348114e-50 | -8.615850e-47 |
| Msa0912600 | Msa1337090 | 0.801286 | 9.672005e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912600 | MtrunA17_Chr6g0465301 | 87.368 | 190 | 12 | 1 | 1 | 178 | 1 | 190 | 2.93e-102 | 292 |
| Msa0912600 | MtrunA17_Chr1g0195701 | 41.436 | 181 | 81 | 5 | 1 | 168 | 1 | 169 | 1.61e-34 | 120 |
| Msa0912600 | MtrunA17_Chr7g0269271 | 46.296 | 108 | 46 | 1 | 1 | 96 | 1 | 108 | 9.79e-27 | 101 |
| Msa0912600 | MtrunA17_Chr6g0460991 | 42.593 | 108 | 51 | 1 | 1 | 97 | 1 | 108 | 8.79e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912600 | AT3G03773.1 | 43.443 | 122 | 57 | 4 | 1 | 112 | 1 | 120 | 1.22e-24 | 94.0 |
| Msa0912600 | AT3G03773.3 | 44.144 | 111 | 52 | 3 | 1 | 101 | 1 | 111 | 4.43e-24 | 91.7 |
| Msa0912600 | AT3G03773.2 | 42.623 | 122 | 58 | 4 | 1 | 112 | 55 | 174 | 4.93e-23 | 91.3 |
| Msa0912600 | AT4G02450.2 | 41.071 | 112 | 53 | 2 | 1 | 100 | 1 | 111 | 7.56e-22 | 89.0 |
| Msa0912600 | AT4G02450.1 | 41.071 | 112 | 53 | 2 | 1 | 100 | 1 | 111 | 7.71e-22 | 89.0 |
Find 55 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGCAGAAGTTGAAAA+TGG | 0.226694 | 6_2:+21701325 | Msa0912600:intron |
| CTCGGGGTTAACTAGTTATT+CGG | 0.304968 | 6_2:+21701687 | Msa0912600:three_prime_UTR |
| AAACAAATAAATAACATTCT+TGG | 0.330839 | 6_2:-21701772 | None:intergenic |
| GATCTGCTACCTGGTGAAAA+AGG | 0.351569 | 6_2:+21700996 | Msa0912600:CDS |
| AGTTTCACATCTTGAGCATC+AGG | 0.380045 | 6_2:-21700572 | None:intergenic |
| TGGACAGTTCCTCAGACCTC+TGG | 0.387431 | 6_2:-21700535 | None:intergenic |
| AATGCCAGGAGTTGCTTCAT+TGG | 0.389069 | 6_2:-21701536 | None:intergenic |
| CCTTGTTGACATATATGAAA+TGG | 0.394332 | 6_2:+21701747 | Msa0912600:three_prime_UTR |
| TGTTATTTATTTGTTTATGT+TGG | 0.405380 | 6_2:+21701779 | Msa0912600:three_prime_UTR |
| TTTGCATCTGGCTCAATGCC+AGG | 0.414547 | 6_2:-21701550 | None:intergenic |
| TGAAAATTGATTGGGACAAG+TGG | 0.431993 | 6_2:+21701076 | Msa0912600:CDS |
| GCCGCCATCCAACAGTCAAA+TGG | 0.438700 | 6_2:+21700510 | Msa0912600:intron |
| TCTGTCCCACCATTTGCTCT+TGG | 0.453554 | 6_2:-21701019 | None:intergenic |
| CAACGTACCGAAAACCTTCT+CGG | 0.461333 | 6_2:+21701669 | Msa0912600:three_prime_UTR |
| ATCAGGCAACTCAACTGTTA+TGG | 0.464121 | 6_2:-21700555 | None:intergenic |
| CCGCCATCCAACAGTCAAAT+GGG | 0.472346 | 6_2:+21700511 | Msa0912600:CDS |
| GCTGCATCTGATAAGGACTT+TGG | 0.475911 | 6_2:+21701215 | Msa0912600:intron |
| AACGTACCGAAAACCTTCTC+GGG | 0.477715 | 6_2:+21701670 | Msa0912600:three_prime_UTR |
| TCTTTGCAGAAGTTGAAAAT+GGG | 0.488943 | 6_2:+21701326 | Msa0912600:intron |
| GGACAGTTCCTCAGACCTCT+GGG | 0.499020 | 6_2:-21700534 | None:intergenic |
| AGCTTTGGTGTCAGGTGCAA+CGG | 0.503127 | 6_2:-21701596 | None:intergenic |
| GGGCCCATTTGACTGTTGGA+TGG | 0.507654 | 6_2:-21700514 | None:intergenic |
| GTGGGACAGATTATTGAAGC+AGG | 0.510083 | 6_2:+21701032 | Msa0912600:CDS |
| GGCTTGGAACTTGATGCTGC+AGG | 0.513676 | 6_2:+21701359 | Msa0912600:CDS |
| GCAGAAGTTGAAAATGGGAG+GGG | 0.530803 | 6_2:+21701331 | Msa0912600:intron |
| AGATTAATGTCGACTTCATA+CGG | 0.542370 | 6_2:-21700653 | None:intergenic |
| TGATGAAAGTGACTCGGAAG+AGG | 0.547063 | 6_2:+21701507 | Msa0912600:CDS |
| CAGAAGTTGAAAATGGGAGG+GGG | 0.552098 | 6_2:+21701332 | Msa0912600:intron |
| GATACCAATGAAGCAACTCC+TGG | 0.560216 | 6_2:+21701532 | Msa0912600:CDS |
| TGCAGAAGTTGAAAATGGGA+GGG | 0.562230 | 6_2:+21701330 | Msa0912600:intron |
| TTCGAGACAGATCTGCTACC+TGG | 0.562294 | 6_2:+21700987 | Msa0912600:CDS |
| TTGCAGAAGTTGAAAATGGG+AGG | 0.564443 | 6_2:+21701329 | Msa0912600:intron |
| ACTGCTAATATTAAATGCAA+TGG | 0.570842 | 6_2:+21701901 | Msa0912600:three_prime_UTR |
| CCCATTTGACTGTTGGATGG+CGG | 0.578083 | 6_2:-21700511 | None:intergenic |
| GATCTGTCTCGAACTAGCAC+TGG | 0.584788 | 6_2:-21700977 | None:intergenic |
| CCATTTCATATATGTCAACA+AGG | 0.589600 | 6_2:-21701747 | None:intergenic |
| TTGGGACAAGTGGGTTGATG+AGG | 0.594395 | 6_2:+21701086 | Msa0912600:CDS |
| GATGCTGCAGGCGATGATGA+TGG | 0.594716 | 6_2:+21701371 | Msa0912600:CDS |
| GAAAATTGATTGGGACAAGT+GGG | 0.596287 | 6_2:+21701077 | Msa0912600:CDS |
| ACAGATTATTGAAGCAGGGA+GGG | 0.600964 | 6_2:+21701037 | Msa0912600:CDS |
| ATATTAAATGCAATGGACAA+AGG | 0.601809 | 6_2:+21701908 | Msa0912600:three_prime_UTR |
| AACAGATGATGAAAGTGACT+CGG | 0.613481 | 6_2:+21701501 | Msa0912600:intron |
| TGAAAGTGACTCGGAAGAGG+AGG | 0.618115 | 6_2:+21701510 | Msa0912600:CDS |
| ATAACTAGTTAACCCCGAGA+AGG | 0.620106 | 6_2:-21701683 | None:intergenic |
| GGATGAATATTATGAACAAG+AGG | 0.632007 | 6_2:+21701107 | Msa0912600:CDS |
| AAAGGCCAAGAGCAAATGGT+GGG | 0.634048 | 6_2:+21701014 | Msa0912600:CDS |
| AAACTCAAAGTTGAGCCAGA+GGG | 0.639802 | 6_2:+21700590 | Msa0912600:CDS |
| TGGGACAGATTATTGAAGCA+GGG | 0.645240 | 6_2:+21701033 | Msa0912600:CDS |
| TCAAGAGTATCTGAGTTCAA+CGG | 0.658771 | 6_2:+21701849 | Msa0912600:intron |
| GAAACTCAAAGTTGAGCCAG+AGG | 0.667710 | 6_2:+21700589 | Msa0912600:CDS |
| GACAGATTATTGAAGCAGGG+AGG | 0.668438 | 6_2:+21701036 | Msa0912600:CDS |
| CAACAGTCAAATGGGCCCAG+AGG | 0.678788 | 6_2:+21700519 | Msa0912600:CDS |
| AAAAGGCCAAGAGCAAATGG+TGG | 0.687978 | 6_2:+21701013 | Msa0912600:CDS |
| CAAATGGGCCCAGAGGTCTG+AGG | 0.699476 | 6_2:+21700526 | Msa0912600:CDS |
| ACGTACCGAAAACCTTCTCG+GGG | 0.715224 | 6_2:+21701671 | Msa0912600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTGTTATATTTAATTA+TGG | + | chr6_2:21698591-21698610 | Msa0912600:intron | 10.0% |
| !! | TGATTGTTATATTTAATTAT+GGG | + | chr6_2:21698592-21698611 | Msa0912600:intron | 10.0% |
| !!! | CATTTTTTTGTATTAAAATT+TGG | + | chr6_2:21699228-21699247 | Msa0912600:intron | 10.0% |
| !!! | TATTAGAATTTTATCATAAT+TGG | + | chr6_2:21699808-21699827 | Msa0912600:intron | 10.0% |
| !!! | TTTTTCTTTTCTTTTCTTTT+CGG | + | chr6_2:21699316-21699335 | Msa0912600:intron | 15.0% |
| !! | ATATTTATTAAAGTTGAACA+AGG | - | chr6_2:21700098-21700117 | None:intergenic | 15.0% |
| !! | AAACAAATAAATAACATTCT+TGG | - | chr6_2:21701775-21701794 | None:intergenic | 15.0% |
| !!! | TGTTATTTATTTGTTTATGT+TGG | + | chr6_2:21701779-21701798 | Msa0912600:three_prime_UTR | 15.0% |
| !! | GAGTTCTACAAAAATAAAAA+GGG | - | chr6_2:21698508-21698527 | None:intergenic | 20.0% |
| !! | TGAGTTCTACAAAAATAAAA+AGG | - | chr6_2:21698509-21698528 | None:intergenic | 20.0% |
| !!! | ATTTTTGTAGAACTCAAATT+AGG | + | chr6_2:21698513-21698532 | Msa0912600:intron | 20.0% |
| !!! | TTTTTGTAGAACTCAAATTA+GGG | + | chr6_2:21698514-21698533 | Msa0912600:intron | 20.0% |
| !!! | AAATTAGGGTTTTAGAAATT+TGG | + | chr6_2:21698528-21698547 | Msa0912600:intron | 20.0% |
| !!! | TGATTTTCTCGAATTATTAT+TGG | + | chr6_2:21698937-21698956 | Msa0912600:intron | 20.0% |
| !!! | ACTTGCTGAAAAAATTTATT+TGG | - | chr6_2:21699840-21699859 | None:intergenic | 20.0% |
| !! | ATTCATAAACTTGAACTTAT+AGG | - | chr6_2:21699923-21699942 | None:intergenic | 20.0% |
| !! | GAATTTAAAGATCTAAGTAT+TGG | - | chr6_2:21700471-21700490 | None:intergenic | 20.0% |
| !!! | TTGGATAATTTCTTTTTGAT+TGG | + | chr6_2:21700716-21700735 | Msa0912600:intron | 20.0% |
| !!! | TTCTTTTCTGAAAATTGATT+GGG | + | chr6_2:21701068-21701087 | Msa0912600:CDS | 20.0% |
| !! | TAAAAAAGTTGGCAATAAAT+CGG | - | chr6_2:21701406-21701425 | None:intergenic | 20.0% |
| !!! | ATTTATTGCCAACTTTTTTA+TGG | + | chr6_2:21701406-21701425 | Msa0912600:intron | 20.0% |
| !! | AATTTAAGCCATAAAAAAGT+TGG | - | chr6_2:21701417-21701436 | None:intergenic | 20.0% |
| !!! | ATCTCAAATTTTTTAAGCTT+TGG | - | chr6_2:21701614-21701633 | None:intergenic | 20.0% |
| ! | AAACAACGACAATAACAATA+AGG | - | chr6_2:21698413-21698432 | None:intergenic | 25.0% |
| !! | AAATGTAGTAAGTATTGCAT+TGG | - | chr6_2:21698722-21698741 | None:intergenic | 25.0% |
| ! | AATTAAAGGGTAATGTTAAC+CGG | - | chr6_2:21698772-21698791 | None:intergenic | 25.0% |
| ! | ATGTCAACATGATTATATGT+TGG | - | chr6_2:21698901-21698920 | None:intergenic | 25.0% |
| ! | AATGAACAAAATCACAAACA+TGG | - | chr6_2:21699212-21699231 | None:intergenic | 25.0% |
| ! | TAAACTTGTCATGTATATCA+TGG | - | chr6_2:21699290-21699309 | None:intergenic | 25.0% |
| ! | CTTAAACATACTCTATTTAG+AGG | + | chr6_2:21699484-21699503 | Msa0912600:intron | 25.0% |
| ! | TTTGCATGACTATAAATAAG+TGG | - | chr6_2:21699660-21699679 | None:intergenic | 25.0% |
| ! | GATAAATGTTCACAATGATA+TGG | - | chr6_2:21699734-21699753 | None:intergenic | 25.0% |
| ! | ATCATTGTGAACATTTATCT+TGG | + | chr6_2:21699735-21699754 | Msa0912600:intron | 25.0% |
| !! | TCATAACTATGGTCTAAAAT+AGG | - | chr6_2:21700068-21700087 | None:intergenic | 25.0% |
| ! | AAGGTTTACATTCATAACTA+TGG | - | chr6_2:21700079-21700098 | None:intergenic | 25.0% |
| ! | TGAAAAGATAGAACTCATAA+CGG | - | chr6_2:21700171-21700190 | None:intergenic | 25.0% |
| ! | CTTAATATAATACAACCACA+AGG | - | chr6_2:21700438-21700457 | None:intergenic | 25.0% |
| ! | GGCTGTATTATAAAATTCAA+AGG | - | chr6_2:21700493-21700512 | None:intergenic | 25.0% |
| ! | AAAAGAAATTATCCAACTAC+TGG | - | chr6_2:21700712-21700731 | None:intergenic | 25.0% |
| !!! | TCTTTTTGATTGGATAATGT+TGG | + | chr6_2:21700726-21700745 | Msa0912600:intron | 25.0% |
| !! | CCATTTTCACAAAAAATTAC+TGG | - | chr6_2:21700809-21700828 | None:intergenic | 25.0% |
| !!! | CCAGTAATTTTTTGTGAAAA+TGG | + | chr6_2:21700806-21700825 | Msa0912600:intron | 25.0% |
| !! | CAATCAATTTTCAGAAAAGA+AGG | - | chr6_2:21701069-21701088 | None:intergenic | 25.0% |
| !!! | CTTCTTTTCTGAAAATTGAT+TGG | + | chr6_2:21701067-21701086 | Msa0912600:CDS | 25.0% |
| ! | ACTGCTAATATTAAATGCAA+TGG | + | chr6_2:21701901-21701920 | Msa0912600:three_prime_UTR | 25.0% |
| ! | ATATTAAATGCAATGGACAA+AGG | + | chr6_2:21701908-21701927 | Msa0912600:three_prime_UTR | 25.0% |
| ! | CTTTTCTGTTCCAACATTTT+CGG | - | chr6_2:21698341-21698360 | None:intergenic | 30.0% |
| !!! | TTAGGGTTTTAGAAATTTGG+TGG | + | chr6_2:21698531-21698550 | Msa0912600:intron | 30.0% |
| ! | AAATTTGGTGGTAGGATAAT+GGG | + | chr6_2:21698543-21698562 | Msa0912600:intron | 30.0% |
| TAATTATGGGTCATGTTAAC+CGG | + | chr6_2:21698605-21698624 | Msa0912600:intron | 30.0% | |
| ACTTAGAATATGATTACCTC+TGG | - | chr6_2:21699360-21699379 | None:intergenic | 30.0% | |
| !! | CACAAAGTGTTGTAAAATAG+CGG | + | chr6_2:21699566-21699585 | Msa0912600:intron | 30.0% |
| TTATAGTCATGCAAACATTG+AGG | + | chr6_2:21699665-21699684 | Msa0912600:intron | 30.0% | |
| CTTATGTGATACTGTAATAG+TGG | - | chr6_2:21700011-21700030 | None:intergenic | 30.0% | |
| !! | AGCTTTATAATGGATGCATT+TGG | + | chr6_2:21700208-21700227 | Msa0912600:intron | 30.0% |
| GATAAGAGTAATGCAAATCT+TGG | - | chr6_2:21700270-21700289 | None:intergenic | 30.0% | |
| CAAGAGAAGTTATAATGTGA+CGG | - | chr6_2:21700292-21700311 | None:intergenic | 30.0% | |
| CACATTATAACTTCTCTTGT+TGG | + | chr6_2:21700293-21700312 | Msa0912600:intron | 30.0% | |
| ! | AGAGGGAAAATTTTACTTCT+CGG | + | chr6_2:21700607-21700626 | Msa0912600:CDS | 30.0% |
| !! | AGATTAATGTCGACTTCATA+CGG | - | chr6_2:21700656-21700675 | None:intergenic | 30.0% |
| GGATGAATATTATGAACAAG+AGG | + | chr6_2:21701107-21701126 | Msa0912600:CDS | 30.0% | |
| !!! | CTTTTGAAATCACTAACGTT+TGG | - | chr6_2:21701133-21701152 | None:intergenic | 30.0% |
| !! | AGTGATTTCAAAAGTATCTC+TGG | + | chr6_2:21701139-21701158 | Msa0912600:intron | 30.0% |
| AAAATGAACTTTGTGTCAAG+AGG | - | chr6_2:21701307-21701326 | None:intergenic | 30.0% | |
| TTCTTTGCAGAAGTTGAAAA+TGG | + | chr6_2:21701325-21701344 | Msa0912600:intron | 30.0% | |
| TCTTTGCAGAAGTTGAAAAT+GGG | + | chr6_2:21701326-21701345 | Msa0912600:intron | 30.0% | |
| TCAAAACTCAATTACAGTCA+TGG | - | chr6_2:21701462-21701481 | None:intergenic | 30.0% | |
| TCTGTTAGGAAAACAAATCA+AGG | - | chr6_2:21701487-21701506 | None:intergenic | 30.0% | |
| !!! | ATTTTTTAAGCTTTGGTGTC+AGG | - | chr6_2:21701607-21701626 | None:intergenic | 30.0% |
| CCATTTCATATATGTCAACA+AGG | - | chr6_2:21701750-21701769 | None:intergenic | 30.0% | |
| CCTTGTTGACATATATGAAA+TGG | + | chr6_2:21701747-21701766 | Msa0912600:three_prime_UTR | 30.0% | |
| TTTCTCTCTTCCGAAAATGT+TGG | + | chr6_2:21698328-21698347 | Msa0912600:intron | 35.0% | |
| !!! | GGTTTTAGAAATTTGGTGGT+AGG | + | chr6_2:21698535-21698554 | Msa0912600:intron | 35.0% |
| ! | GAAATTTGGTGGTAGGATAA+TGG | + | chr6_2:21698542-21698561 | Msa0912600:intron | 35.0% |
| !!! | GTAGGATAATGGGTTTTCAT+TGG | + | chr6_2:21698553-21698572 | Msa0912600:intron | 35.0% |
| AGCTATGATTCCAAAACGTA+AGG | + | chr6_2:21698821-21698840 | Msa0912600:intron | 35.0% | |
| TGATTCCAAAACGTAAGGTT+AGG | + | chr6_2:21698826-21698845 | Msa0912600:intron | 35.0% | |
| ! | TTTTGAATCTTGTAGCCTCT+AGG | + | chr6_2:21699032-21699051 | Msa0912600:intron | 35.0% |
| AGTCAGAGTGAATTCCTTTA+CGG | - | chr6_2:21699070-21699089 | None:intergenic | 35.0% | |
| AAAGGAATTCACTCTGACTT+CGG | + | chr6_2:21699071-21699090 | Msa0912600:intron | 35.0% | |
| TGAGTCATAATGTGTGTTTG+TGG | + | chr6_2:21699252-21699271 | Msa0912600:intron | 35.0% | |
| TAGAATATGATTACCTCTGG+TGG | - | chr6_2:21699357-21699376 | None:intergenic | 35.0% | |
| AAGTATCTACTTTCTGCCAT+TGG | + | chr6_2:21699620-21699639 | Msa0912600:intron | 35.0% | |
| GCATGACTATAAATAAGTGG+TGG | - | chr6_2:21699657-21699676 | None:intergenic | 35.0% | |
| GAGGTTGTAATGTAAGTGAT+AGG | + | chr6_2:21699684-21699703 | Msa0912600:intron | 35.0% | |
| TCATGTGAGAAGAAGATCAA+TGG | - | chr6_2:21700125-21700144 | None:intergenic | 35.0% | |
| !! | GTGCAGTTCTAGCTTTATAA+TGG | + | chr6_2:21700198-21700217 | Msa0912600:intron | 35.0% |
| TTTCCTTTGATACATGACCT+TGG | + | chr6_2:21700333-21700352 | Msa0912600:intron | 35.0% | |
| ACAGAATATAAAACCAGCCA+AGG | - | chr6_2:21700353-21700372 | None:intergenic | 35.0% | |
| ! | AAGCTTTTAACAGAGTCACA+GGG | - | chr6_2:21700384-21700403 | None:intergenic | 35.0% |
| ! | AAAGCTTTTAACAGAGTCAC+AGG | - | chr6_2:21700385-21700404 | None:intergenic | 35.0% |
| !! | GCTTTTTACTTTTGTCCTTG+TGG | + | chr6_2:21700420-21700439 | Msa0912600:intron | 35.0% |
| ! | GAGAAGTAAAATTTTCCCTC+TGG | - | chr6_2:21700608-21700627 | None:intergenic | 35.0% |
| !! | ACAGCGTTGATGTAAATGTA+AGG | + | chr6_2:21700681-21700700 | Msa0912600:intron | 35.0% |
| AGCTGTTATCTATGAAACAC+TGG | + | chr6_2:21700755-21700774 | Msa0912600:intron | 35.0% | |
| TGAAAATTGATTGGGACAAG+TGG | + | chr6_2:21701076-21701095 | Msa0912600:CDS | 35.0% | |
| GAAAATTGATTGGGACAAGT+GGG | + | chr6_2:21701077-21701096 | Msa0912600:CDS | 35.0% | |
| !! | TTTTTCAGCTGCATCTGATA+AGG | + | chr6_2:21701208-21701227 | Msa0912600:intron | 35.0% |
| ! | AGTCACTTTCATCATCTGTT+AGG | - | chr6_2:21701501-21701520 | None:intergenic | 35.0% |
| AACAGATGATGAAAGTGACT+CGG | + | chr6_2:21701501-21701520 | Msa0912600:intron | 35.0% | |
| !!! | GAGATAGTTTTGACTGTGTA+AGG | + | chr6_2:21701629-21701648 | Msa0912600:three_prime_UTR | 35.0% |
| ! | CTTGACAAGTTCAGTTTTTG+TGG | + | chr6_2:21701711-21701730 | Msa0912600:three_prime_UTR | 35.0% |
| !! | TCAAGAGTATCTGAGTTCAA+CGG | + | chr6_2:21701849-21701868 | Msa0912600:intron | 35.0% |
| ATGAAGCAATGATGCAGGAA+TGG | - | chr6_2:21698990-21699009 | None:intergenic | 40.0% | |
| TTCCTGCATCATTGCTTCAT+AGG | + | chr6_2:21698990-21699009 | Msa0912600:intron | 40.0% | |
| AACCTATGAAGCAATGATGC+AGG | - | chr6_2:21698995-21699014 | None:intergenic | 40.0% | |
| TGCATCATTGCTTCATAGGT+TGG | + | chr6_2:21698994-21699013 | Msa0912600:intron | 40.0% | |
| ! | ATCATTGCTTCATAGGTTGG+TGG | + | chr6_2:21698997-21699016 | Msa0912600:intron | 40.0% |
| GAGTGAATTCCTTTACGGAT+TGG | - | chr6_2:21699065-21699084 | None:intergenic | 40.0% | |
| CCAAACTCAAACTCGGTATA+CGG | - | chr6_2:21699151-21699170 | None:intergenic | 40.0% | |
| ! | CGTATACCGAGTTTGAGTTT+GGG | + | chr6_2:21699149-21699168 | Msa0912600:intron | 40.0% |
| TTACAGCCCAAACTCAAACT+CGG | - | chr6_2:21699158-21699177 | None:intergenic | 40.0% | |
| AATATGATTACCTCTGGTGG+AGG | - | chr6_2:21699354-21699373 | None:intergenic | 40.0% | |
| TCTAGCTGGGATTCTAACAT+TGG | + | chr6_2:21699407-21699426 | Msa0912600:intron | 40.0% | |
| !! | AACATTGGTTCACAACGTTG+TGG | + | chr6_2:21699422-21699441 | Msa0912600:intron | 40.0% |
| !! | ACATTGGTTCACAACGTTGT+GGG | + | chr6_2:21699423-21699442 | Msa0912600:intron | 40.0% |
| !! | GATTTTGAGTCAACAGTTCG+AGG | + | chr6_2:21699765-21699784 | Msa0912600:intron | 40.0% |
| TATCACATAAGCACGTCTGA+AGG | + | chr6_2:21700020-21700039 | Msa0912600:intron | 40.0% | |
| ATCAGGCAACTCAACTGTTA+TGG | - | chr6_2:21700558-21700577 | None:intergenic | 40.0% | |
| AGTTTCACATCTTGAGCATC+AGG | - | chr6_2:21700575-21700594 | None:intergenic | 40.0% | |
| AAACTCAAAGTTGAGCCAGA+GGG | + | chr6_2:21700590-21700609 | Msa0912600:CDS | 40.0% | |
| ATCGAATGTGTTGTCAGTGT+TGG | + | chr6_2:21700833-21700852 | Msa0912600:intron | 40.0% | |
| ATCAAATAACCACCGTCAAC+TGG | - | chr6_2:21700896-21700915 | None:intergenic | 40.0% | |
| TTTCCAACATGTCCTGTAAC+CGG | + | chr6_2:21700923-21700942 | Msa0912600:intron | 40.0% | |
| GAGAAGACACATTAACACAC+CGG | - | chr6_2:21700945-21700964 | None:intergenic | 40.0% | |
| GTGTGTTAATGTGTCTTCTC+AGG | + | chr6_2:21700945-21700964 | Msa0912600:intron | 40.0% | |
| TGAAAAAGGCCAAGAGCAAA+TGG | + | chr6_2:21701010-21701029 | Msa0912600:CDS | 40.0% | |
| TGGGACAGATTATTGAAGCA+GGG | + | chr6_2:21701033-21701052 | Msa0912600:CDS | 40.0% | |
| ACAGATTATTGAAGCAGGGA+GGG | + | chr6_2:21701037-21701056 | Msa0912600:CDS | 40.0% | |
| TTGCAGAAGTTGAAAATGGG+AGG | + | chr6_2:21701329-21701348 | Msa0912600:intron | 40.0% | |
| TGCAGAAGTTGAAAATGGGA+GGG | + | chr6_2:21701330-21701349 | Msa0912600:intron | 40.0% | |
| ATAACTAGTTAACCCCGAGA+AGG | - | chr6_2:21701686-21701705 | None:intergenic | 40.0% | |
| CTCGGGGTTAACTAGTTATT+CGG | + | chr6_2:21701687-21701706 | Msa0912600:three_prime_UTR | 40.0% | |
| ! | ACAAGTTCAGTTTTTGTGGC+TGG | + | chr6_2:21701715-21701734 | Msa0912600:three_prime_UTR | 40.0% |
| ! | ACACGCCTAACCTTACGTTT+TGG | - | chr6_2:21698834-21698853 | None:intergenic | 45.0% |
| AATGGACACCAGACAAGACA+GGG | - | chr6_2:21698972-21698991 | None:intergenic | 45.0% | |
| !! | CTTCATAGGTTGGTGGTGTA+GGG | + | chr6_2:21699004-21699023 | Msa0912600:intron | 45.0% |
| GAATTCACTCTGACTTCGGT+TGG | + | chr6_2:21699075-21699094 | Msa0912600:intron | 45.0% | |
| GATCGGTCTCCCAAATTAGA+AGG | + | chr6_2:21699118-21699137 | Msa0912600:intron | 45.0% | |
| CTCCCAAATTAGAAGGTCCT+TGG | + | chr6_2:21699125-21699144 | Msa0912600:intron | 45.0% | |
| GGCCAAGGACCTTCTAATTT+GGG | - | chr6_2:21699130-21699149 | None:intergenic | 45.0% | |
| ! | CCGTATACCGAGTTTGAGTT+TGG | + | chr6_2:21699148-21699167 | Msa0912600:intron | 45.0% |
| AATGTGTGTACCTCTCTAGC+TGG | + | chr6_2:21699393-21699412 | Msa0912600:intron | 45.0% | |
| ATGTGTGTACCTCTCTAGCT+GGG | + | chr6_2:21699394-21699413 | Msa0912600:intron | 45.0% | |
| TGTTAGAATCCCAGCTAGAG+AGG | - | chr6_2:21699406-21699425 | None:intergenic | 45.0% | |
| ! | GTGATAGTGCTCTAGCATAG+TGG | + | chr6_2:21699588-21699607 | Msa0912600:intron | 45.0% |
| CAGCCAAGGTCATGTATCAA+AGG | - | chr6_2:21700339-21700358 | None:intergenic | 45.0% | |
| CTTTGATACATGACCTTGGC+TGG | + | chr6_2:21700337-21700356 | Msa0912600:intron | 45.0% | |
| GAAACTCAAAGTTGAGCCAG+AGG | + | chr6_2:21700589-21700608 | Msa0912600:CDS | 45.0% | |
| ! | TTTTACTTCTCGGCAACTGC+TGG | + | chr6_2:21700617-21700636 | Msa0912600:CDS | 45.0% |
| TGTAAGGTCTCACCAGTAGT+TGG | + | chr6_2:21700697-21700716 | Msa0912600:intron | 45.0% | |
| AATAACCACCGTCAACTGGT+TGG | - | chr6_2:21700892-21700911 | None:intergenic | 45.0% | |
| ! | CACATTAACACACCGGTTAC+AGG | - | chr6_2:21700938-21700957 | None:intergenic | 45.0% |
| GATCTGCTACCTGGTGAAAA+AGG | + | chr6_2:21700996-21701015 | Msa0912600:CDS | 45.0% | |
| AAAAGGCCAAGAGCAAATGG+TGG | + | chr6_2:21701013-21701032 | Msa0912600:CDS | 45.0% | |
| AAAGGCCAAGAGCAAATGGT+GGG | + | chr6_2:21701014-21701033 | Msa0912600:CDS | 45.0% | |
| GTGGGACAGATTATTGAAGC+AGG | + | chr6_2:21701032-21701051 | Msa0912600:CDS | 45.0% | |
| GACAGATTATTGAAGCAGGG+AGG | + | chr6_2:21701036-21701055 | Msa0912600:CDS | 45.0% | |
| GCTGCATCTGATAAGGACTT+TGG | + | chr6_2:21701215-21701234 | Msa0912600:intron | 45.0% | |
| GCAGAAGTTGAAAATGGGAG+GGG | + | chr6_2:21701331-21701350 | Msa0912600:intron | 45.0% | |
| CAGAAGTTGAAAATGGGAGG+GGG | + | chr6_2:21701332-21701351 | Msa0912600:intron | 45.0% | |
| ! | TGATGAAAGTGACTCGGAAG+AGG | + | chr6_2:21701507-21701526 | Msa0912600:CDS | 45.0% |
| GATACCAATGAAGCAACTCC+TGG | + | chr6_2:21701532-21701551 | Msa0912600:CDS | 45.0% | |
| AATGCCAGGAGTTGCTTCAT+TGG | - | chr6_2:21701539-21701558 | None:intergenic | 45.0% | |
| ! | CTGACAGTGTCTTTTGCATC+TGG | - | chr6_2:21701565-21701584 | None:intergenic | 45.0% |
| CAACGTACCGAAAACCTTCT+CGG | + | chr6_2:21701669-21701688 | Msa0912600:three_prime_UTR | 45.0% | |
| AACGTACCGAAAACCTTCTC+GGG | + | chr6_2:21701670-21701689 | Msa0912600:three_prime_UTR | 45.0% | |
| ! | GTTAACCCCGAGAAGGTTTT+CGG | - | chr6_2:21701679-21701698 | None:intergenic | 45.0% |
| !!! | ATTTTAAAATTTCTTTTTTT+AGG | - | chr6_2:21698654-21698673 | None:intergenic | 5.0% |
| !! | TATTAAGATTAATAATTAAA+GGG | - | chr6_2:21698785-21698804 | None:intergenic | 5.0% |
| !! | ATATTAAGATTAATAATTAA+AGG | - | chr6_2:21698786-21698805 | None:intergenic | 5.0% |
| !! | TTTAATTATTAATCTTAATA+TGG | + | chr6_2:21698785-21698804 | Msa0912600:intron | 5.0% |
| TGCTTTCTTAACCAGTGCCC+CGG | + | chr6_2:21698741-21698760 | Msa0912600:intron | 50.0% | |
| GGTTAGGCGTGTCTTAGTGT+CGG | + | chr6_2:21698842-21698861 | Msa0912600:intron | 50.0% | |
| !! | CTTAGTGTCGGTGTTGGTGT+CGG | + | chr6_2:21698854-21698873 | Msa0912600:intron | 50.0% |
| !! | TTAGTGTCGGTGTTGGTGTC+GGG | + | chr6_2:21698855-21698874 | Msa0912600:intron | 50.0% |
| GAATGGACACCAGACAAGAC+AGG | - | chr6_2:21698973-21698992 | None:intergenic | 50.0% | |
| !! | GCTTCATAGGTTGGTGGTGT+AGG | + | chr6_2:21699003-21699022 | Msa0912600:intron | 50.0% |
| !! | ATAGGTTGGTGGTGTAGGGT+TGG | + | chr6_2:21699008-21699027 | Msa0912600:intron | 50.0% |
| !! | TAGGTTGGTGGTGTAGGGTT+GGG | + | chr6_2:21699009-21699028 | Msa0912600:intron | 50.0% |
| ! | GGTGTTGAGCCAATCCGTAA+AGG | + | chr6_2:21699053-21699072 | Msa0912600:intron | 50.0% |
| CGGCCAAGGACCTTCTAATT+TGG | - | chr6_2:21699131-21699150 | None:intergenic | 50.0% | |
| TCAAACTCGGTATACGGCCA+AGG | - | chr6_2:21699145-21699164 | None:intergenic | 50.0% | |
| TTACATGCTTCCTCCACCAG+AGG | + | chr6_2:21699341-21699360 | Msa0912600:intron | 50.0% | |
| GGTGGTAACAGTGTTGCCAA+TGG | - | chr6_2:21699639-21699658 | None:intergenic | 50.0% | |
| ! | TAAGCACGTCTGAAGGCGTA+TGG | + | chr6_2:21700027-21700046 | Msa0912600:intron | 50.0% |
| CCCATTTGACTGTTGGATGG+CGG | - | chr6_2:21700514-21700533 | None:intergenic | 50.0% | |
| CCGCCATCCAACAGTCAAAT+GGG | + | chr6_2:21700511-21700530 | Msa0912600:CDS | 50.0% | |
| CACTTGCACATGTCAGACAC+TGG | + | chr6_2:21700857-21700876 | Msa0912600:intron | 50.0% | |
| CACGACTTCCAACCAGTTGA+CGG | + | chr6_2:21700881-21700900 | Msa0912600:intron | 50.0% | |
| ! | ACACCGGTTACAGGACATGT+TGG | - | chr6_2:21700929-21700948 | None:intergenic | 50.0% |
| GATCTGTCTCGAACTAGCAC+TGG | - | chr6_2:21700980-21700999 | None:intergenic | 50.0% | |
| TTCGAGACAGATCTGCTACC+TGG | + | chr6_2:21700987-21701006 | Msa0912600:CDS | 50.0% | |
| !! | TGCTCTTGGCCTTTTTCACC+AGG | - | chr6_2:21701008-21701027 | None:intergenic | 50.0% |
| TCTGTCCCACCATTTGCTCT+TGG | - | chr6_2:21701022-21701041 | None:intergenic | 50.0% | |
| !! | TTGGGACAAGTGGGTTGATG+AGG | + | chr6_2:21701086-21701105 | Msa0912600:CDS | 50.0% |
| TTGAAAATGGGAGGGGGTGA+TGG | + | chr6_2:21701338-21701357 | Msa0912600:CDS | 50.0% | |
| ! | TGAAAGTGACTCGGAAGAGG+AGG | + | chr6_2:21701510-21701529 | Msa0912600:CDS | 50.0% |
| ! | TTTGCATCTGGCTCAATGCC+AGG | - | chr6_2:21701553-21701572 | None:intergenic | 50.0% |
| !! | AGCTTTGGTGTCAGGTGCAA+CGG | - | chr6_2:21701599-21701618 | None:intergenic | 50.0% |
| ! | CGAGAAGGTTTTCGGTACGT+TGG | - | chr6_2:21701671-21701690 | None:intergenic | 50.0% |
| ACGTACCGAAAACCTTCTCG+GGG | + | chr6_2:21701671-21701690 | Msa0912600:three_prime_UTR | 50.0% | |
| GTCATGTTAACCGGTGCCCT+GGG | + | chr6_2:21698614-21698633 | Msa0912600:intron | 55.0% | |
| GGTTCCTTAACCAGTGCCCA+GGG | - | chr6_2:21698633-21698652 | None:intergenic | 55.0% | |
| AGGTTCCTTAACCAGTGCCC+AGG | - | chr6_2:21698634-21698653 | None:intergenic | 55.0% | |
| GCTTTCTTAACCAGTGCCCC+GGG | + | chr6_2:21698742-21698761 | Msa0912600:intron | 55.0% | |
| CTTTCTTAACCAGTGCCCCG+GGG | + | chr6_2:21698743-21698762 | Msa0912600:intron | 55.0% | |
| TTTCTTAACCAGTGCCCCGG+GGG | + | chr6_2:21698744-21698763 | Msa0912600:intron | 55.0% | |
| TAATGTTAACCGGTGCCCCC+GGG | - | chr6_2:21698762-21698781 | None:intergenic | 55.0% | |
| GTAATGTTAACCGGTGCCCC+CGG | - | chr6_2:21698763-21698782 | None:intergenic | 55.0% | |
| !! | GCGTGTCTTAGTGTCGGTGT+TGG | + | chr6_2:21698848-21698867 | Msa0912600:intron | 55.0% |
| ACCAGACAAGACAGGGACAC+TGG | - | chr6_2:21698965-21698984 | None:intergenic | 55.0% | |
| !! | CGGATTGGCTCAACACCTAG+AGG | - | chr6_2:21699050-21699069 | None:intergenic | 55.0% |
| CGATCCTACTGTCCACTAGC+GGG | - | chr6_2:21699103-21699122 | None:intergenic | 55.0% | |
| CCGATCCTACTGTCCACTAG+CGG | - | chr6_2:21699104-21699123 | None:intergenic | 55.0% | |
| ! | CCGCTAGTGGACAGTAGGAT+CGG | + | chr6_2:21699101-21699120 | Msa0912600:intron | 55.0% |
| GCCGCCATCCAACAGTCAAA+TGG | + | chr6_2:21700510-21700529 | Msa0912600:intron | 55.0% | |
| GGGCCCATTTGACTGTTGGA+TGG | - | chr6_2:21700517-21700536 | None:intergenic | 55.0% | |
| CTCTGGGCCCATTTGACTGT+TGG | - | chr6_2:21700521-21700540 | None:intergenic | 55.0% | |
| CAACAGTCAAATGGGCCCAG+AGG | + | chr6_2:21700519-21700538 | Msa0912600:CDS | 55.0% | |
| GGACAGTTCCTCAGACCTCT+GGG | - | chr6_2:21700537-21700556 | None:intergenic | 55.0% | |
| TGGACAGTTCCTCAGACCTC+TGG | - | chr6_2:21700538-21700557 | None:intergenic | 55.0% | |
| !! | TGGTGTTGACGTGTCGTGCT+TGG | - | chr6_2:21700789-21700808 | None:intergenic | 55.0% |
| GACTTCCAACCAGTTGACGG+TGG | + | chr6_2:21700884-21700903 | Msa0912600:intron | 55.0% | |
| GGCTTGGAACTTGATGCTGC+AGG | + | chr6_2:21701359-21701378 | Msa0912600:CDS | 55.0% | |
| GATGCTGCAGGCGATGATGA+TGG | + | chr6_2:21701371-21701390 | Msa0912600:CDS | 55.0% | |
| GGTCATGTTAACCGGTGCCC+TGG | + | chr6_2:21698613-21698632 | Msa0912600:intron | 60.0% | |
| TTAACCAGTGCCCAGGGCAC+CGG | - | chr6_2:21698627-21698646 | None:intergenic | 60.0% | |
| AATGTTAACCGGTGCCCCCG+GGG | - | chr6_2:21698761-21698780 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTTGGTGTCGGGT+TGG | + | chr6_2:21698859-21698878 | Msa0912600:intron | 60.0% |
| GCCAGTGTCCCTGTCTTGTC+TGG | + | chr6_2:21698961-21698980 | Msa0912600:intron | 60.0% | |
| CTTCGGTTGGATCCCGCTAG+TGG | + | chr6_2:21699088-21699107 | Msa0912600:intron | 60.0% | |
| ! | GGATCCCGCTAGTGGACAGT+AGG | + | chr6_2:21699096-21699115 | Msa0912600:intron | 60.0% |
| CAAATGGGCCCAGAGGTCTG+AGG | + | chr6_2:21700526-21700545 | Msa0912600:CDS | 60.0% | |
| ! | AATGGGAGGGGGTGATGGCT+TGG | + | chr6_2:21701343-21701362 | Msa0912600:CDS | 60.0% |
| TTAACCGGTGCCCTGGGCAC+TGG | + | chr6_2:21698620-21698639 | Msa0912600:intron | 65.0% | |
| !! | GGTGCCCTGGGCACTGGTTA+AGG | + | chr6_2:21698626-21698645 | Msa0912600:intron | 65.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | chr6_2:21698750-21698769 | Msa0912600:intron | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | chr6_2:21698755-21698774 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 21698258 | 21701941 | 21698258 | ID=Msa0912600;Name=Msa0912600 |
| chr6_2 | mRNA | 21698258 | 21701941 | 21698258 | ID=Msa0912600-mRNA-1;Parent=Msa0912600;Name=Msa0912600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.71|0.85|0.83|0.71|7|286|178 |
| chr6_2 | exon | 21698258 | 21698262 | 21698258 | ID=Msa0912600-mRNA-1:exon:4309;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21700511 | 21700661 | 21700511 | ID=Msa0912600-mRNA-1:exon:4310;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21700967 | 21701135 | 21700967 | ID=Msa0912600-mRNA-1:exon:4311;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21701216 | 21701253 | 21701216 | ID=Msa0912600-mRNA-1:exon:4312;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21701335 | 21701392 | 21701335 | ID=Msa0912600-mRNA-1:exon:4313;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21701506 | 21701827 | 21701506 | ID=Msa0912600-mRNA-1:exon:4314;Parent=Msa0912600-mRNA-1 |
| chr6_2 | exon | 21701862 | 21701941 | 21701862 | ID=Msa0912600-mRNA-1:exon:4315;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21698258 | 21698262 | 21698258 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21700511 | 21700661 | 21700511 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21700967 | 21701135 | 21700967 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21701216 | 21701253 | 21701216 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21701335 | 21701392 | 21701335 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | CDS | 21701506 | 21701621 | 21701506 | ID=Msa0912600-mRNA-1:cds;Parent=Msa0912600-mRNA-1 |
| chr6_2 | three_prime_UTR | 21701622 | 21701827 | 21701622 | ID=Msa0912600-mRNA-1:three_prime_utr;Parent=Msa0912600-mRNA-1 |
| chr6_2 | three_prime_UTR | 21701862 | 21701941 | 21701862 | ID=Msa0912600-mRNA-1:three_prime_utr;Parent=Msa0912600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
