Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709760 | XP_013462138.1 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709760 | sp|Q43814|OTC_PEA | 88.000 | 375 | 42 | 1 | 1 | 372 | 1 | 375 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709760 | A0A072V483 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0709760 | 0.813212 | 2.868860e-51 | -8.615850e-47 |
| Msa0027540 | Msa0709760 | 0.808823 | 2.562476e-50 | -8.615850e-47 |
| Msa0032120 | Msa0709760 | 0.806696 | 7.256494e-50 | -8.615850e-47 |
| Msa0075310 | Msa0709760 | 0.810018 | 1.419583e-50 | -8.615850e-47 |
| Msa0084680 | Msa0709760 | 0.809153 | 2.178245e-50 | -8.615850e-47 |
| Msa0101320 | Msa0709760 | -0.808185 | 3.507146e-50 | -8.615850e-47 |
| Msa0120330 | Msa0709760 | 0.805629 | 1.217227e-49 | -8.615850e-47 |
| Msa0607600 | Msa0709760 | -0.815574 | 8.622409e-52 | -8.615850e-47 |
| Msa0631450 | Msa0709760 | 0.820269 | 7.498634e-53 | -8.615850e-47 |
| Msa0639370 | Msa0709760 | 0.826622 | 2.452264e-54 | -8.615850e-47 |
| Msa0642650 | Msa0709760 | 0.800417 | 1.455380e-48 | -8.615850e-47 |
| Msa0678860 | Msa0709760 | 0.802452 | 5.573511e-49 | -8.615850e-47 |
| Msa0681890 | Msa0709760 | 0.807798 | 4.239345e-50 | -8.615850e-47 |
| Msa0687860 | Msa0709760 | -0.813418 | 2.585937e-51 | -8.615850e-47 |
| Msa0696620 | Msa0709760 | 0.801889 | 7.277465e-49 | -8.615850e-47 |
| Msa0703760 | Msa0709760 | 0.800273 | 1.557086e-48 | -8.615850e-47 |
| Msa0709760 | Msa0730180 | 0.802013 | 6.861646e-49 | -8.615850e-47 |
| Msa0709760 | Msa0746600 | 0.806649 | 7.425665e-50 | -8.615850e-47 |
| Msa0709760 | Msa0813320 | -0.811351 | 7.312223e-51 | -8.615850e-47 |
| Msa0709760 | Msa0843690 | 0.809919 | 1.491360e-50 | -8.615850e-47 |
| Msa0709760 | Msa0874760 | 0.804574 | 2.023276e-49 | -8.615850e-47 |
| Msa0709760 | Msa0890250 | 0.801966 | 7.014759e-49 | -8.615850e-47 |
| Msa0709760 | Msa0912600 | 0.805713 | 1.168571e-49 | -8.615850e-47 |
| Msa0709760 | Msa0925160 | 0.802073 | 6.671018e-49 | -8.615850e-47 |
| Msa0709760 | Msa0931480 | 0.808872 | 2.501094e-50 | -8.615850e-47 |
| Msa0709760 | Msa0946320 | 0.807467 | 4.982703e-50 | -8.615850e-47 |
| Msa0709760 | Msa0955260 | 0.802870 | 4.569252e-49 | -8.615850e-47 |
| Msa0709760 | Msa0990520 | 0.819073 | 1.406044e-52 | -8.615850e-47 |
| Msa0709760 | Msa1072080 | 0.802326 | 5.916970e-49 | -8.615850e-47 |
| Msa0709760 | Msa1129560 | 0.803823 | 2.900576e-49 | -8.615850e-47 |
| Msa0709760 | Msa1159100 | 0.821545 | 3.814927e-53 | -8.615850e-47 |
| Msa0709760 | Msa1188940 | 0.805454 | 1.324316e-49 | -8.615850e-47 |
| Msa0709760 | Msa1243170 | 0.817765 | 2.782523e-52 | -8.615850e-47 |
| Msa0709760 | Msa1284520 | 0.836471 | 9.177797e-57 | -8.615850e-47 |
| Msa0709760 | Msa1324000 | 0.806998 | 6.263663e-50 | -8.615850e-47 |
| Msa0709760 | Msa1337090 | 0.819456 | 1.150643e-52 | -8.615850e-47 |
| Msa0709760 | Msa1379570 | 0.802055 | 6.726911e-49 | -8.615850e-47 |
| Msa0709760 | Msa1382310 | 0.822690 | 2.069990e-53 | -8.615850e-47 |
| Msa0709760 | Msa1398480 | 0.804966 | 1.676329e-49 | -8.615850e-47 |
| Msa0709760 | Msa1449880 | 0.826199 | 3.092911e-54 | -8.615850e-47 |
| Msa0709760 | Msa1464560 | 0.802539 | 5.348322e-49 | -8.615850e-47 |
| Msa0141830 | Msa0709760 | 0.813683 | 2.260296e-51 | -8.615850e-47 |
| Msa0207000 | Msa0709760 | 0.800530 | 1.380497e-48 | -8.615850e-47 |
| Msa0425940 | Msa0709760 | 0.831004 | 2.134561e-55 | -8.615850e-47 |
| Msa0426160 | Msa0709760 | 0.829370 | 5.347017e-55 | -8.615850e-47 |
| Msa0431430 | Msa0709760 | 0.825103 | 5.625672e-54 | -8.615850e-47 |
| Msa0434940 | Msa0709760 | 0.994436 | 3.102896e-207 | -8.615850e-47 |
| Msa0461640 | Msa0709760 | 0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa0289780 | Msa0709760 | 0.803309 | 3.706590e-49 | -8.615850e-47 |
| Msa0298970 | Msa0709760 | 0.809433 | 1.897007e-50 | -8.615850e-47 |
| Msa0323990 | Msa0709760 | 0.810497 | 1.119290e-50 | -8.615850e-47 |
| Msa0327550 | Msa0709760 | 0.809683 | 1.676064e-50 | -8.615850e-47 |
| Msa0352510 | Msa0709760 | 0.800210 | 1.604087e-48 | -8.615850e-47 |
| Msa0510450 | Msa0709760 | 0.819789 | 9.655124e-53 | -8.615850e-47 |
| Msa0538570 | Msa0709760 | 0.812945 | 3.283191e-51 | -8.615850e-47 |
| Msa0546380 | Msa0709760 | 0.802027 | 6.815906e-49 | -8.615850e-47 |
| Msa0546840 | Msa0709760 | 0.817109 | 3.909924e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709760 | MtrunA17_Chr3g0141741 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Msa0709760 | MtrunA17_Chr1g0155401 | 75.595 | 336 | 77 | 2 | 37 | 372 | 37 | 367 | 0.0 | 545 |
| Msa0709760 | MtrunA17_Chr5g0444701 | 28.614 | 332 | 212 | 12 | 49 | 366 | 57 | 377 | 2.49e-22 | 97.1 |
| Msa0709760 | MtrunA17_Chr4g0052321 | 29.180 | 305 | 194 | 10 | 78 | 370 | 39 | 333 | 5.00e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709760 | AT1G75330.1 | 76.786 | 336 | 78 | 0 | 36 | 371 | 39 | 374 | 0.0 | 540 |
| Msa0709760 | AT3G20330.1 | 28.869 | 336 | 212 | 11 | 47 | 370 | 67 | 387 | 1.09e-24 | 104 |
| Msa0709760 | AT3G20330.2 | 28.869 | 336 | 212 | 11 | 47 | 370 | 67 | 387 | 1.09e-24 | 104 |
Find 113 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATTGATAGCTTAAAAT+TGG | 0.214779 | 5_1:-893523 | None:intergenic |
| CCAAGTGTTCAAAGGATTTC+AGG | 0.223509 | 5_1:+892206 | Msa0709760:CDS |
| CTTATTCATATAGTCTATTA+AGG | 0.225480 | 5_1:+893653 | Msa0709760:three_prime_UTR |
| ATAGCTTAAAATTGGAAAAC+TGG | 0.262851 | 5_1:-893515 | None:intergenic |
| AATAAATTGTTTCCGACTTT+AGG | 0.300565 | 5_1:+893366 | Msa0709760:three_prime_UTR |
| GATCCAATAGAAGCTGTTAA+AGG | 0.304292 | 5_1:+892117 | Msa0709760:CDS |
| GCTCCTTTAACAGCTTCTAT+TGG | 0.306544 | 5_1:-892120 | None:intergenic |
| TGTGCTGAGTAAAGTGAAAA+TGG | 0.310696 | 5_1:+890093 | Msa0709760:exon |
| CTTACTATGATTGAGCATAT+TGG | 0.330619 | 5_1:+891807 | Msa0709760:CDS |
| TGAGGGAATACTATTGAATA+TGG | 0.338965 | 5_1:-893239 | None:intergenic |
| ATGTTGTGTATTCAGATGTC+TGG | 0.339826 | 5_1:+892145 | Msa0709760:CDS |
| GTCAAGACATTGCTGAAATC+AGG | 0.345748 | 5_1:+890589 | Msa0709760:CDS |
| GCATCAGGTTCAAAACCTTT+TGG | 0.353201 | 5_1:-892039 | None:intergenic |
| CGAAGAAGAAACGGAGGAAA+TGG | 0.360158 | 5_1:-890209 | None:intergenic |
| TTTGTTTGTGCTTGTCCAAA+AGG | 0.370668 | 5_1:+892024 | Msa0709760:CDS |
| GGGAGGAGAAAGAGAGAGGT+AGG | 0.374197 | 5_1:-890167 | None:intergenic |
| GGGATGTGAATGGCGGAGAT+TGG | 0.378498 | 5_1:-890188 | None:intergenic |
| GCAGGTGGATCAAAGTCTTA+TGG | 0.392884 | 5_1:+893133 | Msa0709760:intron |
| GGATGTGAATGGCGGAGATT+GGG | 0.403006 | 5_1:-890187 | None:intergenic |
| TCTGTCAATCCATTGATGAT+TGG | 0.406520 | 5_1:-891750 | None:intergenic |
| CTGTCAATCCATTGATGATT+GGG | 0.407392 | 5_1:-891749 | None:intergenic |
| GGTGGCCATGCTATTTACTT+AGG | 0.422127 | 5_1:+890715 | Msa0709760:CDS |
| AGGACCTGATGACATTCAAA+TGG | 0.433277 | 5_1:+890735 | Msa0709760:CDS |
| GAGCATATTGGTCGGTTTGA+AGG | 0.441335 | 5_1:+891819 | Msa0709760:CDS |
| GACATTGTCTTCCCTTCAAA+AGG | 0.442663 | 5_1:-890628 | None:intergenic |
| CCTGAAATCCTTTGAACACT+TGG | 0.444836 | 5_1:-892206 | None:intergenic |
| TGTCCACTCATGGTTGTTGA+TGG | 0.446713 | 5_1:+891981 | Msa0709760:CDS |
| CTGGGCCAGCATGGGGCAAA+AGG | 0.452623 | 5_1:+892164 | Msa0709760:CDS |
| GCTATAATGCTCCATGTACT+TGG | 0.453359 | 5_1:+893290 | Msa0709760:CDS |
| CAATATGCTCAATCATAGTA+AGG | 0.454172 | 5_1:-891806 | None:intergenic |
| AAATGAAACCCTTGTTCTCA+TGG | 0.455161 | 5_1:-890671 | None:intergenic |
| TAGTGTTCACTTGTAATAGT+TGG | 0.455266 | 5_1:+893390 | Msa0709760:three_prime_UTR |
| TAAGGGCATCTGCCATGATC+TGG | 0.456920 | 5_1:-891788 | None:intergenic |
| GTTGAGAAGGCAAGGAAGGC+TGG | 0.464381 | 5_1:+892069 | Msa0709760:CDS |
| GATATTGTTCTGAGTGGAAA+TGG | 0.471099 | 5_1:-890232 | None:intergenic |
| CAGGTTGTTTACGTTGGAGA+TGG | 0.472606 | 5_1:+891949 | Msa0709760:intron |
| TAGCCGGTTAGATGATATAT+TGG | 0.476017 | 5_1:+893317 | Msa0709760:exon |
| GGCATCTGCCATGATCTGGC+AGG | 0.477854 | 5_1:-891784 | None:intergenic |
| TGTTACTCTTACTGCGCCGT+TGG | 0.479100 | 5_1:+890133 | Msa0709760:CDS |
| TCAGATGTCTGGGCCAGCAT+GGG | 0.479544 | 5_1:+892156 | Msa0709760:CDS |
| TAATGACATTATCATGGCTC+GGG | 0.483139 | 5_1:+890804 | Msa0709760:CDS |
| TTACCCATTTGAATGTCATC+AGG | 0.485259 | 5_1:-890739 | None:intergenic |
| ACTTCCACCCCTCGCTCCGC+TGG | 0.493862 | 5_1:-893194 | None:intergenic |
| GATATTAGATCGAGCTATTG+AGG | 0.495351 | 5_1:+890567 | Msa0709760:CDS |
| GTTACCGGTGAGAGGAGATT+CGG | 0.496839 | 5_1:-890281 | None:intergenic |
| TGCATTCGGTTCTCAGCTTG+AGG | 0.497081 | 5_1:-893257 | None:intergenic |
| CTGCCATGATCTGGCAGGGA+TGG | 0.497703 | 5_1:-891779 | None:intergenic |
| AGACCAATATATCATCTAAC+CGG | 0.498029 | 5_1:-893320 | None:intergenic |
| CCGGCTACTTGCCAAGTACA+TGG | 0.499356 | 5_1:-893301 | None:intergenic |
| TTCAGATGTCTGGGCCAGCA+TGG | 0.499913 | 5_1:+892155 | Msa0709760:CDS |
| ACAAGGGTTTCATTTGAGAC+TGG | 0.507664 | 5_1:+890679 | Msa0709760:CDS |
| TATGGATGCGGCTGGTTCAA+AGG | 0.508322 | 5_1:+893151 | Msa0709760:CDS |
| CAACCATCCCTGCCAGATCA+TGG | 0.508342 | 5_1:+891776 | Msa0709760:CDS |
| GGAGGAGAAAGAGAGAGGTA+GGG | 0.508712 | 5_1:-890166 | None:intergenic |
| CAAGCACAAACAAAGTGAAA+AGG | 0.514178 | 5_1:-892015 | None:intergenic |
| GCAACTGTCCCAATCATCAA+TGG | 0.517535 | 5_1:+891741 | Msa0709760:CDS |
| ATAATGACATTATCATGGCT+CGG | 0.518928 | 5_1:+890803 | Msa0709760:CDS |
| GCATTCGGTTCTCAGCTTGA+GGG | 0.522280 | 5_1:-893256 | None:intergenic |
| AACAGTTGAGAAGGCAAGGA+AGG | 0.523900 | 5_1:+892065 | Msa0709760:CDS |
| GAAGAAGAAACGGAGGAAAT+GGG | 0.527805 | 5_1:-890208 | None:intergenic |
| CTAAGCCGTCCATGAGAACA+AGG | 0.529547 | 5_1:+890662 | Msa0709760:CDS |
| ACTGCTTACCAGCGGAGCGA+GGG | 0.530384 | 5_1:+893186 | Msa0709760:CDS |
| TAGCTTAAAATTGGAAAACT+GGG | 0.532486 | 5_1:-893514 | None:intergenic |
| TCGTTATAATGACATTATCA+TGG | 0.532732 | 5_1:+890798 | Msa0709760:CDS |
| TGTGAATGGCGGAGATTGGG+AGG | 0.534236 | 5_1:-890184 | None:intergenic |
| GGACCTGATGACATTCAAAT+GGG | 0.535925 | 5_1:+890736 | Msa0709760:CDS |
| TCAAGACATTGCTGAAATCA+GGG | 0.538060 | 5_1:+890590 | Msa0709760:CDS |
| TGGAAATGGCGAAGAAGAAA+CGG | 0.539105 | 5_1:-890218 | None:intergenic |
| GTATTATCACTAGCCACTGA+AGG | 0.539988 | 5_1:+893458 | Msa0709760:three_prime_UTR |
| CACTGCTTACCAGCGGAGCG+AGG | 0.540194 | 5_1:+893185 | Msa0709760:CDS |
| GGACGGCTTAGCAAATATCA+TGG | 0.540729 | 5_1:-890650 | None:intergenic |
| GCATGTCAGGTTGTTTACGT+TGG | 0.547332 | 5_1:+891943 | Msa0709760:intron |
| CAAAGTCTTATGGATGCGGC+TGG | 0.548039 | 5_1:+893143 | Msa0709760:CDS |
| CCATGTACTTGGCAAGTAGC+CGG | 0.549707 | 5_1:+893301 | Msa0709760:exon |
| CGGAGGAAATGGGATGTGAA+TGG | 0.550725 | 5_1:-890198 | None:intergenic |
| GATTGGGAGGAGAAAGAGAG+AGG | 0.552857 | 5_1:-890171 | None:intergenic |
| GTGCTGAGTAAAGTGAAAAT+GGG | 0.554153 | 5_1:+890094 | Msa0709760:exon |
| CTGCTTACCAGCGGAGCGAG+GGG | 0.556312 | 5_1:+893187 | Msa0709760:CDS |
| GAAATAATATTGTCCACTCA+TGG | 0.565147 | 5_1:+891971 | Msa0709760:CDS |
| CGGAGAGAGCAGAAGTTGCA+TGG | 0.569724 | 5_1:-890258 | None:intergenic |
| CATTGCTGAAATCAGGGGAC+AGG | 0.571303 | 5_1:+890596 | Msa0709760:CDS |
| TACCGTCGCCAAGTGTTCAA+AGG | 0.573877 | 5_1:+892198 | Msa0709760:CDS |
| CTTACCAGCGGAGCGAGGGG+TGG | 0.577236 | 5_1:+893190 | Msa0709760:CDS |
| AAAATAGAAAATTAGATCAG+AGG | 0.579650 | 5_1:+893615 | Msa0709760:three_prime_UTR |
| GGATCAAAGTCTTATGGATG+CGG | 0.579686 | 5_1:+893139 | Msa0709760:CDS |
| ATCCTTTGAACACTTGGCGA+CGG | 0.584165 | 5_1:-892200 | None:intergenic |
| GTAGGGTTTGTGTGATCCAA+CGG | 0.588209 | 5_1:-890149 | None:intergenic |
| GAAACCCTTGTTCTCATGGA+CGG | 0.592363 | 5_1:-890667 | None:intergenic |
| AAGATTCAGCTGCCCTTCAG+TGG | 0.592448 | 5_1:-893471 | None:intergenic |
| TGTTGTGTATTCAGATGTCT+GGG | 0.593052 | 5_1:+892146 | Msa0709760:CDS |
| TATTATCACTAGCCACTGAA+GGG | 0.598215 | 5_1:+893459 | Msa0709760:three_prime_UTR |
| CTATGATTGAGCATATTGGT+CGG | 0.599286 | 5_1:+891811 | Msa0709760:CDS |
| AATATGCTCAATCATAGTAA+GGG | 0.611377 | 5_1:-891805 | None:intergenic |
| CAGATGTCTGGGCCAGCATG+GGG | 0.615087 | 5_1:+892157 | Msa0709760:CDS |
| GCATCTGCCATGATCTGGCA+GGG | 0.615091 | 5_1:-891783 | None:intergenic |
| CTGCCATCAACAACCATGAG+TGG | 0.620696 | 5_1:-891984 | None:intergenic |
| AGTGAACACTAGCCTAAAGT+CGG | 0.626682 | 5_1:-893378 | None:intergenic |
| TGAGTGGGGTTACCGGTGAG+AGG | 0.628022 | 5_1:-890289 | None:intergenic |
| TTGGAGTATAATAATAAGTG+AGG | 0.628443 | 5_1:+890032 | Msa0709760:five_prime_UTR |
| TCCGCCGAATCTCCTCTCAC+CGG | 0.629659 | 5_1:+890277 | Msa0709760:CDS |
| TGGTCGGTTTGAAGGAACAA+AGG | 0.634562 | 5_1:+891827 | Msa0709760:CDS |
| GCGAGGGGTGGAAGTGACTG+AGG | 0.634700 | 5_1:+893202 | Msa0709760:CDS |
| CATTCAAATGGGTAAGCGAG+AGG | 0.652099 | 5_1:+890747 | Msa0709760:CDS |
| ACCGGTGAGAGGAGATTCGG+CGG | 0.653909 | 5_1:-890278 | None:intergenic |
| GTGAAAATGGGTGTGATGAG+TGG | 0.655754 | 5_1:+890106 | Msa0709760:exon |
| CAGGTCCTAAGTAAATAGCA+TGG | 0.658976 | 5_1:-890720 | None:intergenic |
| CGGCGCAGTAAGAGTAACAG+TGG | 0.662083 | 5_1:-890129 | None:intergenic |
| CAAGACATTGCTGAAATCAG+GGG | 0.670685 | 5_1:+890591 | Msa0709760:CDS |
| TTTCATGCACTGCTTACCAG+CGG | 0.673751 | 5_1:+893178 | Msa0709760:CDS |
| AGGAAATGGGATGTGAATGG+CGG | 0.675402 | 5_1:-890195 | None:intergenic |
| TGGCATGATATTGTTCTGAG+TGG | 0.683484 | 5_1:-890238 | None:intergenic |
| AAATGGCGAAGAAGAAACGG+AGG | 0.721906 | 5_1:-890215 | None:intergenic |
| TAAGCCGTCCATGAGAACAA+GGG | 0.723620 | 5_1:+890663 | Msa0709760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTAATCTAATTATT+AGG | + | chr5_1:890332-890351 | Msa0709760:intron | 10.0% |
| !!! | CATTTTTAATCTAATTATTA+GGG | + | chr5_1:890333-890352 | Msa0709760:intron | 10.0% |
| !!! | AGTTATATTTGATATTGTTT+TGG | + | chr5_1:890889-890908 | Msa0709760:intron | 15.0% |
| !! | ATTCAATTGAAATTTGAAAA+AGG | - | chr5_1:890945-890964 | None:intergenic | 15.0% |
| !! | TAAGTTTAATTCTTGAATTA+AGG | + | chr5_1:891062-891081 | Msa0709760:intron | 15.0% |
| !! | CAAATAATTAAAATGAAAAG+GGG | - | chr5_1:891694-891713 | None:intergenic | 15.0% |
| !! | GCAAATAATTAAAATGAAAA+GGG | - | chr5_1:891695-891714 | None:intergenic | 15.0% |
| !! | TGCAAATAATTAAAATGAAA+AGG | - | chr5_1:891696-891715 | None:intergenic | 15.0% |
| !!! | TTTTCATTTTAATTATTTGC+AGG | + | chr5_1:891695-891714 | Msa0709760:intron | 15.0% |
| !!! | AATTTTCTATTTTGGAAAAT+TGG | - | chr5_1:893608-893627 | None:intergenic | 15.0% |
| !! | ATGAAATCTTAAACTAGAAT+CGG | - | chr5_1:890316-890335 | None:intergenic | 20.0% |
| !! | CAAGTTATTTAAATCAAGAT+TGG | - | chr5_1:890393-890412 | None:intergenic | 20.0% |
| !!! | CTGAAATATTTTGATATTAG+TGG | + | chr5_1:891526-891545 | Msa0709760:intron | 20.0% |
| !! | AGGTACTTAATATAATATTG+TGG | + | chr5_1:892226-892245 | Msa0709760:intron | 20.0% |
| !!! | TCACAAAATATAGTGTTTTT+GGG | + | chr5_1:892249-892268 | Msa0709760:intron | 20.0% |
| !!! | TTAAAACAAAGTGTTATTGT+GGG | + | chr5_1:892397-892416 | Msa0709760:intron | 20.0% |
| !!! | GAAATGATTTATCTTTTGTA+TGG | + | chr5_1:892459-892478 | Msa0709760:intron | 20.0% |
| !!! | TCTGATCTAATTTTCTATTT+TGG | - | chr5_1:893616-893635 | None:intergenic | 20.0% |
| !! | AAAATAGAAAATTAGATCAG+AGG | + | chr5_1:893615-893634 | Msa0709760:three_prime_UTR | 20.0% |
| !! | CTTATTCATATAGTCTATTA+AGG | + | chr5_1:893653-893672 | Msa0709760:three_prime_UTR | 20.0% |
| ! | TTGGAGTATAATAATAAGTG+AGG | + | chr5_1:890032-890051 | Msa0709760:five_prime_UTR | 25.0% |
| ! | TATACTCAAACAGAAAAAGT+TGG | + | chr5_1:890487-890506 | Msa0709760:intron | 25.0% |
| ! | AAACAGAAAAAGTTGGAAAT+GGG | + | chr5_1:890494-890513 | Msa0709760:intron | 25.0% |
| !!! | TCACATAGATGATTTTGATA+AGG | + | chr5_1:890531-890550 | Msa0709760:CDS | 25.0% |
| ! | TCGTTATAATGACATTATCA+TGG | + | chr5_1:890798-890817 | Msa0709760:CDS | 25.0% |
| ! | TTCAATGAACAACTTTCATA+GGG | + | chr5_1:891034-891053 | Msa0709760:intron | 25.0% |
| !!! | ATTAAGGATTTGCTTTTAAG+AGG | + | chr5_1:891078-891097 | Msa0709760:intron | 25.0% |
| ! | AATATGCTCAATCATAGTAA+GGG | - | chr5_1:891808-891827 | None:intergenic | 25.0% |
| !! | GTCACAAAATATAGTGTTTT+TGG | + | chr5_1:892248-892267 | Msa0709760:intron | 25.0% |
| !! | GTTAAAACAAAGTGTTATTG+TGG | + | chr5_1:892396-892415 | Msa0709760:intron | 25.0% |
| ! | TATTTCTTTGTTACAAATGG+AGG | - | chr5_1:892736-892755 | None:intergenic | 25.0% |
| ! | TCCATTTGTAACAAAGAAAT+AGG | + | chr5_1:892735-892754 | Msa0709760:intron | 25.0% |
| !! | TCCTATTTCTTTGTTACAAA+TGG | - | chr5_1:892739-892758 | None:intergenic | 25.0% |
| ! | GTATTTCATATTCATCAACT+TGG | - | chr5_1:892773-892792 | None:intergenic | 25.0% |
| ! | ATGTGAATAGACTAGTATTT+AGG | + | chr5_1:892829-892848 | Msa0709760:intron | 25.0% |
| ! | ATGCCACAAAATCAAAATAA+TGG | - | chr5_1:893042-893061 | None:intergenic | 25.0% |
| ! | AATAAATTGTTTCCGACTTT+AGG | + | chr5_1:893366-893385 | Msa0709760:three_prime_UTR | 25.0% |
| ! | TAGCTTAAAATTGGAAAACT+GGG | - | chr5_1:893517-893536 | None:intergenic | 25.0% |
| ! | ATAGCTTAAAATTGGAAAAC+TGG | - | chr5_1:893518-893537 | None:intergenic | 25.0% |
| !! | TGTGATTGATAGCTTAAAAT+TGG | - | chr5_1:893526-893545 | None:intergenic | 25.0% |
| !!! | ACACTGTCATTTTTTGATTT+GGG | + | chr5_1:893543-893562 | Msa0709760:three_prime_UTR | 25.0% |
| !!! | TGTTTTGAGTTTTGAACAAC+TGG | + | chr5_1:890411-890430 | Msa0709760:intron | 30.0% |
| !!! | GTTTTGAGTTTTGAACAACT+GGG | + | chr5_1:890412-890431 | Msa0709760:intron | 30.0% |
| CAAACAGAAAAAGTTGGAAA+TGG | + | chr5_1:890493-890512 | Msa0709760:intron | 30.0% | |
| ATAATGACATTATCATGGCT+CGG | + | chr5_1:890803-890822 | Msa0709760:CDS | 30.0% | |
| AGGAAATATAAGCACAAGAA+TGG | - | chr5_1:890925-890944 | None:intergenic | 30.0% | |
| GTTCAATGAACAACTTTCAT+AGG | + | chr5_1:891033-891052 | Msa0709760:intron | 30.0% | |
| TCAATGAACAACTTTCATAG+GGG | + | chr5_1:891035-891054 | Msa0709760:intron | 30.0% | |
| ! | CAGGTTTTTACAATCAAACT+TGG | - | chr5_1:891286-891305 | None:intergenic | 30.0% |
| TTATCTACAAGCAATTATCC+TGG | - | chr5_1:891309-891328 | None:intergenic | 30.0% | |
| TTACTCTTTCAATTTACGCA+TGG | - | chr5_1:891350-891369 | None:intergenic | 30.0% | |
| GGATTTATGTAATGCAAACA+CGG | + | chr5_1:891469-891488 | Msa0709760:intron | 30.0% | |
| GATTTATGTAATGCAAACAC+GGG | + | chr5_1:891470-891489 | Msa0709760:intron | 30.0% | |
| !! | TGGCCTCTTAAAATTTTAGT+GGG | + | chr5_1:891546-891565 | Msa0709760:intron | 30.0% |
| ! | AAGCCCACTAAAATTTTAAG+AGG | - | chr5_1:891552-891571 | None:intergenic | 30.0% |
| CAATATGCTCAATCATAGTA+AGG | - | chr5_1:891809-891828 | None:intergenic | 30.0% | |
| CTTACTATGATTGAGCATAT+TGG | + | chr5_1:891807-891826 | Msa0709760:CDS | 30.0% | |
| ! | TGTTGTTTGTCTTGAAAAGT+AGG | + | chr5_1:891858-891877 | Msa0709760:intron | 30.0% |
| GACATGCATATCATAGAATA+TGG | - | chr5_1:891930-891949 | None:intergenic | 30.0% | |
| TATTCTATGATATGCATGTC+AGG | + | chr5_1:891930-891949 | Msa0709760:intron | 30.0% | |
| GAAATAATATTGTCCACTCA+TGG | + | chr5_1:891971-891990 | Msa0709760:CDS | 30.0% | |
| AGGATCAAACCTCTTATAAA+TGG | - | chr5_1:892666-892685 | None:intergenic | 30.0% | |
| ACTTGTTCACACTTAGATTT+CGG | + | chr5_1:892866-892885 | Msa0709760:intron | 30.0% | |
| TATTTATGGAACAATGCAGT+GGG | - | chr5_1:892925-892944 | None:intergenic | 30.0% | |
| GCATTGTTCCATAAATAGTT+AGG | + | chr5_1:892928-892947 | Msa0709760:intron | 30.0% | |
| CCTAAGTTCCTAACTATTTA+TGG | - | chr5_1:892939-892958 | None:intergenic | 30.0% | |
| CCATAAATAGTTAGGAACTT+AGG | + | chr5_1:892936-892955 | Msa0709760:intron | 30.0% | |
| AAAATAAAGAGTCGGATGAA+GGG | - | chr5_1:893015-893034 | None:intergenic | 30.0% | |
| AAAAATAAAGAGTCGGATGA+AGG | - | chr5_1:893016-893035 | None:intergenic | 30.0% | |
| ATGGCAGAAAAATAAAGAGT+CGG | - | chr5_1:893023-893042 | None:intergenic | 30.0% | |
| !!! | CTGCCATTATTTTGATTTTG+TGG | + | chr5_1:893036-893055 | Msa0709760:intron | 30.0% |
| TGAGGGAATACTATTGAATA+TGG | - | chr5_1:893242-893261 | None:intergenic | 30.0% | |
| AGACCAATATATCATCTAAC+CGG | - | chr5_1:893323-893342 | None:intergenic | 30.0% | |
| TAGTGTTCACTTGTAATAGT+TGG | + | chr5_1:893390-893409 | Msa0709760:three_prime_UTR | 30.0% | |
| !!! | CACTTGTAATAGTTGGTTTT+AGG | + | chr5_1:893397-893416 | Msa0709760:three_prime_UTR | 30.0% |
| !!! | TAATAGTTGGTTTTAGGCTT+CGG | + | chr5_1:893403-893422 | Msa0709760:three_prime_UTR | 30.0% |
| !!! | CACACTGTCATTTTTTGATT+TGG | + | chr5_1:893542-893561 | Msa0709760:three_prime_UTR | 30.0% |
| !!! | CACTGTCATTTTTTGATTTG+GGG | + | chr5_1:893544-893563 | Msa0709760:three_prime_UTR | 30.0% |
| TGTGCTGAGTAAAGTGAAAA+TGG | + | chr5_1:890093-890112 | Msa0709760:exon | 35.0% | |
| GTGCTGAGTAAAGTGAAAAT+GGG | + | chr5_1:890094-890113 | Msa0709760:exon | 35.0% | |
| ! | GATATTGTTCTGAGTGGAAA+TGG | - | chr5_1:890235-890254 | None:intergenic | 35.0% |
| TAAACTAGAATCGGATGAGT+GGG | - | chr5_1:890307-890326 | None:intergenic | 35.0% | |
| TTAAACTAGAATCGGATGAG+TGG | - | chr5_1:890308-890327 | None:intergenic | 35.0% | |
| GATATTAGATCGAGCTATTG+AGG | + | chr5_1:890567-890586 | Msa0709760:CDS | 35.0% | |
| TCAAGACATTGCTGAAATCA+GGG | + | chr5_1:890590-890609 | Msa0709760:CDS | 35.0% | |
| AAATGAAACCCTTGTTCTCA+TGG | - | chr5_1:890674-890693 | None:intergenic | 35.0% | |
| TTACCCATTTGAATGTCATC+AGG | - | chr5_1:890742-890761 | None:intergenic | 35.0% | |
| TAATGACATTATCATGGCTC+GGG | + | chr5_1:890804-890823 | Msa0709760:CDS | 35.0% | |
| !! | AAGGATTTGCTTTTAAGAGG+TGG | + | chr5_1:891081-891100 | Msa0709760:intron | 35.0% |
| !! | AGGATTTGCTTTTAAGAGGT+GGG | + | chr5_1:891082-891101 | Msa0709760:intron | 35.0% |
| ACAATCGCAAGAGGATATAA+AGG | - | chr5_1:891231-891250 | None:intergenic | 35.0% | |
| TTTGATTGTAAAAACCTGCC+AGG | + | chr5_1:891288-891307 | Msa0709760:intron | 35.0% | |
| GTTAACTGAAGAACAATACG+TGG | + | chr5_1:891402-891421 | Msa0709760:intron | 35.0% | |
| ATAGATTGTGTGTGCAATGT+TGG | + | chr5_1:891448-891467 | Msa0709760:intron | 35.0% | |
| ! | GTGGCCTCTTAAAATTTTAG+TGG | + | chr5_1:891545-891564 | Msa0709760:intron | 35.0% |
| !! | TACAAGACTTGCTATCTGAT+TGG | + | chr5_1:891603-891622 | Msa0709760:intron | 35.0% |
| !! | ACAAGACTTGCTATCTGATT+GGG | + | chr5_1:891604-891623 | Msa0709760:intron | 35.0% |
| CATCAATAAACGTGCACTTT+CGG | + | chr5_1:891663-891682 | Msa0709760:intron | 35.0% | |
| ! | CTGTCAATCCATTGATGATT+GGG | - | chr5_1:891752-891771 | None:intergenic | 35.0% |
| ! | TCTGTCAATCCATTGATGAT+TGG | - | chr5_1:891753-891772 | None:intergenic | 35.0% |
| CTATGATTGAGCATATTGGT+CGG | + | chr5_1:891811-891830 | Msa0709760:CDS | 35.0% | |
| GTAGGCTTCTTTCTAATTCT+TGG | + | chr5_1:891876-891895 | Msa0709760:intron | 35.0% | |
| GCATATCATAGAATATGGTC+AGG | - | chr5_1:891925-891944 | None:intergenic | 35.0% | |
| CAAGCACAAACAAAGTGAAA+AGG | - | chr5_1:892018-892037 | None:intergenic | 35.0% | |
| TTTGTTTGTGCTTGTCCAAA+AGG | + | chr5_1:892024-892043 | Msa0709760:CDS | 35.0% | |
| !!! | TTCTCAACTGTTTTTGCATC+AGG | - | chr5_1:892057-892076 | None:intergenic | 35.0% |
| TGATGCAAAAACAGTTGAGA+AGG | + | chr5_1:892056-892075 | Msa0709760:CDS | 35.0% | |
| GATCCAATAGAAGCTGTTAA+AGG | + | chr5_1:892117-892136 | Msa0709760:CDS | 35.0% | |
| ATGTTGTGTATTCAGATGTC+TGG | + | chr5_1:892145-892164 | Msa0709760:CDS | 35.0% | |
| TGTTGTGTATTCAGATGTCT+GGG | + | chr5_1:892146-892165 | Msa0709760:CDS | 35.0% | |
| ! | ATTCTTTTACTGTAGCCATC+TGG | + | chr5_1:892312-892331 | Msa0709760:intron | 35.0% |
| TGTCTAAGCTAAATTCCAGA+TGG | - | chr5_1:892330-892349 | None:intergenic | 35.0% | |
| ! | GAATTTAGCTTAGACAGTTC+AGG | + | chr5_1:892334-892353 | Msa0709760:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr5_1:892561-892580 | Msa0709760:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr5_1:892566-892585 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr5_1:892566-892585 | Msa0709760:intron | 35.0% | |
| !! | AACAGCAACTTTTATTTCCC+AGG | + | chr5_1:892893-892912 | Msa0709760:intron | 35.0% |
| CTATTTATGGAACAATGCAG+TGG | - | chr5_1:892926-892945 | None:intergenic | 35.0% | |
| AAATAAAGAGTCGGATGAAG+GGG | - | chr5_1:893014-893033 | None:intergenic | 35.0% | |
| ! | TAGCATTTTGTGCATGCATT+CGG | - | chr5_1:893274-893293 | None:intergenic | 35.0% |
| TAGCCGGTTAGATGATATAT+TGG | + | chr5_1:893317-893336 | Msa0709760:exon | 35.0% | |
| !!! | AATAGTTGGTTTTAGGCTTC+GGG | + | chr5_1:893404-893423 | Msa0709760:three_prime_UTR | 35.0% |
| TATTATCACTAGCCACTGAA+GGG | + | chr5_1:893459-893478 | Msa0709760:three_prime_UTR | 35.0% | |
| ! | AGAAAAACAGCAAGTGTCGT+TGG | + | chr5_1:890061-890080 | Msa0709760:five_prime_UTR | 40.0% |
| GAAGAAGAAACGGAGGAAAT+GGG | - | chr5_1:890211-890230 | None:intergenic | 40.0% | |
| TGGAAATGGCGAAGAAGAAA+CGG | - | chr5_1:890221-890240 | None:intergenic | 40.0% | |
| ! | TGGCATGATATTGTTCTGAG+TGG | - | chr5_1:890241-890260 | None:intergenic | 40.0% |
| AAACTAGAATCGGATGAGTG+GGG | - | chr5_1:890306-890325 | None:intergenic | 40.0% | |
| GTCAAGACATTGCTGAAATC+AGG | + | chr5_1:890589-890608 | Msa0709760:CDS | 40.0% | |
| CAAGACATTGCTGAAATCAG+GGG | + | chr5_1:890591-890610 | Msa0709760:CDS | 40.0% | |
| ! | AGGACATTTCGACCTTTTGA+AGG | + | chr5_1:890616-890635 | Msa0709760:CDS | 40.0% |
| ! | GGACATTTCGACCTTTTGAA+GGG | + | chr5_1:890617-890636 | Msa0709760:CDS | 40.0% |
| GACATTGTCTTCCCTTCAAA+AGG | - | chr5_1:890631-890650 | None:intergenic | 40.0% | |
| ! | ACAAGGGTTTCATTTGAGAC+TGG | + | chr5_1:890679-890698 | Msa0709760:CDS | 40.0% |
| !!! | TGAGACTGGCTTTTCATTGT+TGG | + | chr5_1:890693-890712 | Msa0709760:CDS | 40.0% |
| !!! | GAGACTGGCTTTTCATTGTT+GGG | + | chr5_1:890694-890713 | Msa0709760:CDS | 40.0% |
| CAGGTCCTAAGTAAATAGCA+TGG | - | chr5_1:890723-890742 | None:intergenic | 40.0% | |
| AGGACCTGATGACATTCAAA+TGG | + | chr5_1:890735-890754 | Msa0709760:CDS | 40.0% | |
| GGACCTGATGACATTCAAAT+GGG | + | chr5_1:890736-890755 | Msa0709760:CDS | 40.0% | |
| TCATCAGGTATGTTGCTCAT+TGG | + | chr5_1:890834-890853 | Msa0709760:intron | 40.0% | |
| AGTTGTTCATTGAACCCATG+AGG | - | chr5_1:891028-891047 | None:intergenic | 40.0% | |
| AATTTGTAGCTTGATGCCAC+CGG | + | chr5_1:891129-891148 | Msa0709760:intron | 40.0% | |
| TCAATTACTGTCCCCAAAGT+CGG | - | chr5_1:891182-891201 | None:intergenic | 40.0% | |
| GGCTTCTTTCTAATTCTTGG+TGG | + | chr5_1:891879-891898 | Msa0709760:intron | 40.0% | |
| ! | GCATCAGGTTCAAAACCTTT+TGG | - | chr5_1:892042-892061 | None:intergenic | 40.0% |
| CAAAAACAGTTGAGAAGGCA+AGG | + | chr5_1:892061-892080 | Msa0709760:CDS | 40.0% | |
| GCTCCTTTAACAGCTTCTAT+TGG | - | chr5_1:892123-892142 | None:intergenic | 40.0% | |
| CCTGAAATCCTTTGAACACT+TGG | - | chr5_1:892209-892228 | None:intergenic | 40.0% | |
| CCAAGTGTTCAAAGGATTTC+AGG | + | chr5_1:892206-892225 | Msa0709760:CDS | 40.0% | |
| TTAGCTTAGACAGTTCAGGT+TGG | + | chr5_1:892338-892357 | Msa0709760:intron | 40.0% | |
| ! | TAGCTTAGACAGTTCAGGTT+GGG | + | chr5_1:892339-892358 | Msa0709760:intron | 40.0% |
| ! | GGGATTGGTGCATCAATTAT+AGG | + | chr5_1:892369-892388 | Msa0709760:intron | 40.0% |
| TATGGACTTACGAGCAAAGT+AGG | + | chr5_1:892477-892496 | Msa0709760:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr5_1:892560-892579 | Msa0709760:intron | 40.0% | |
| GCGTACAATACACCAAATAG+TGG | + | chr5_1:892591-892610 | Msa0709760:intron | 40.0% | |
| TTCAAGCTCTTGCTTATTGG+AGG | - | chr5_1:892705-892724 | None:intergenic | 40.0% | |
| CCAATAAGCAAGAGCTTGAA+CGG | + | chr5_1:892705-892724 | Msa0709760:intron | 40.0% | |
| TGTTCAAGACAGTGCCAAAA+TGG | + | chr5_1:892971-892990 | Msa0709760:intron | 40.0% | |
| ! | GGAGAGTTTGACATCCATTT+TGG | - | chr5_1:892988-893007 | None:intergenic | 40.0% |
| ! | GGATCAAAGTCTTATGGATG+CGG | + | chr5_1:893139-893158 | Msa0709760:CDS | 40.0% |
| GCTATAATGCTCCATGTACT+TGG | + | chr5_1:893290-893309 | Msa0709760:CDS | 40.0% | |
| ! | AGTGAACACTAGCCTAAAGT+CGG | - | chr5_1:893381-893400 | None:intergenic | 40.0% |
| GTATTATCACTAGCCACTGA+AGG | + | chr5_1:893458-893477 | Msa0709760:three_prime_UTR | 40.0% | |
| GTGAAAATGGGTGTGATGAG+TGG | + | chr5_1:890106-890125 | Msa0709760:exon | 45.0% | |
| GTAGGGTTTGTGTGATCCAA+CGG | - | chr5_1:890152-890171 | None:intergenic | 45.0% | |
| AGGAAATGGGATGTGAATGG+CGG | - | chr5_1:890198-890217 | None:intergenic | 45.0% | |
| CGAAGAAGAAACGGAGGAAA+TGG | - | chr5_1:890212-890231 | None:intergenic | 45.0% | |
| AAATGGCGAAGAAGAAACGG+AGG | - | chr5_1:890218-890237 | None:intergenic | 45.0% | |
| GGACGGCTTAGCAAATATCA+TGG | - | chr5_1:890653-890672 | None:intergenic | 45.0% | |
| TAAGCCGTCCATGAGAACAA+GGG | + | chr5_1:890663-890682 | Msa0709760:CDS | 45.0% | |
| GAAACCCTTGTTCTCATGGA+CGG | - | chr5_1:890670-890689 | None:intergenic | 45.0% | |
| !!! | ACTGGCTTTTCATTGTTGGG+TGG | + | chr5_1:890697-890716 | Msa0709760:CDS | 45.0% |
| ! | GGTGGCCATGCTATTTACTT+AGG | + | chr5_1:890715-890734 | Msa0709760:CDS | 45.0% |
| CATTCAAATGGGTAAGCGAG+AGG | + | chr5_1:890747-890766 | Msa0709760:CDS | 45.0% | |
| TCAGGTATGTTGCTCATTGG+TGG | + | chr5_1:890837-890856 | Msa0709760:intron | 45.0% | |
| TCTGCGCAAAGTTGTGTGAA+AGG | + | chr5_1:890964-890983 | Msa0709760:intron | 45.0% | |
| AGTTGTGTGAAAGGAGCAAC+CGG | + | chr5_1:890973-890992 | Msa0709760:intron | 45.0% | |
| AGGGTTCAATACATGCCTCA+TGG | + | chr5_1:891010-891029 | Msa0709760:intron | 45.0% | |
| GGGTTCAATACATGCCTCAT+GGG | + | chr5_1:891011-891030 | Msa0709760:intron | 45.0% | |
| TCTGTAAAACATGCATCCGG+TGG | - | chr5_1:891148-891167 | None:intergenic | 45.0% | |
| ! | ACCGGATGCATGTTTTACAG+AGG | + | chr5_1:891147-891166 | Msa0709760:intron | 45.0% |
| CCCTCTGTAAAACATGCATC+CGG | - | chr5_1:891151-891170 | None:intergenic | 45.0% | |
| ! | CCGGATGCATGTTTTACAGA+GGG | + | chr5_1:891148-891167 | Msa0709760:intron | 45.0% |
| CTACAAGCAATTATCCTGGC+AGG | - | chr5_1:891305-891324 | None:intergenic | 45.0% | |
| GCAACTGTCCCAATCATCAA+TGG | + | chr5_1:891741-891760 | Msa0709760:CDS | 45.0% | |
| !! | GAGCATATTGGTCGGTTTGA+AGG | + | chr5_1:891819-891838 | Msa0709760:CDS | 45.0% |
| !! | TGGTCGGTTTGAAGGAACAA+AGG | + | chr5_1:891827-891846 | Msa0709760:CDS | 45.0% |
| ! | GCATGTCAGGTTGTTTACGT+TGG | + | chr5_1:891943-891962 | Msa0709760:intron | 45.0% |
| CAGGTTGTTTACGTTGGAGA+TGG | + | chr5_1:891949-891968 | Msa0709760:intron | 45.0% | |
| TGTCCACTCATGGTTGTTGA+TGG | + | chr5_1:891981-892000 | Msa0709760:CDS | 45.0% | |
| AACAGTTGAGAAGGCAAGGA+AGG | + | chr5_1:892065-892084 | Msa0709760:CDS | 45.0% | |
| ATCCTTTGAACACTTGGCGA+CGG | - | chr5_1:892203-892222 | None:intergenic | 45.0% | |
| !! | TTAGACAGTTCAGGTTGGGT+GGG | + | chr5_1:892343-892362 | Msa0709760:intron | 45.0% |
| CTTGTGTTATGTTTGTCGCG+TGG | + | chr5_1:892506-892525 | Msa0709760:intron | 45.0% | |
| ! | CAAATAGTGGAACCCCTTCT+CGG | + | chr5_1:892604-892623 | Msa0709760:intron | 45.0% |
| CTAAAGATCCCACATACGCA+GGG | - | chr5_1:892631-892650 | None:intergenic | 45.0% | |
| ACTAAAGATCCCACATACGC+AGG | - | chr5_1:892632-892651 | None:intergenic | 45.0% | |
| ATGTGGGATCTTTAGTGCAC+CGG | + | chr5_1:892636-892655 | Msa0709760:intron | 45.0% | |
| ACCTCTTATAAATGGCAGCC+CGG | - | chr5_1:892658-892677 | None:intergenic | 45.0% | |
| TTATTGGAGGAAAGGAGGAC+TGG | - | chr5_1:892692-892711 | None:intergenic | 45.0% | |
| CTTGCTTATTGGAGGAAAGG+AGG | - | chr5_1:892697-892716 | None:intergenic | 45.0% | |
| GCTCTTGCTTATTGGAGGAA+AGG | - | chr5_1:892700-892719 | None:intergenic | 45.0% | |
| CCGTTCAAGCTCTTGCTTAT+TGG | - | chr5_1:892708-892727 | None:intergenic | 45.0% | |
| AATGCAGTGGGAACTTACCT+GGG | - | chr5_1:892913-892932 | None:intergenic | 45.0% | |
| TGAAACCATATGCCCAATGC+AGG | + | chr5_1:893115-893134 | Msa0709760:intron | 45.0% | |
| GACTTTGATCCACCTGCATT+GGG | - | chr5_1:893130-893149 | None:intergenic | 45.0% | |
| AGACTTTGATCCACCTGCAT+TGG | - | chr5_1:893131-893150 | None:intergenic | 45.0% | |
| GCAGGTGGATCAAAGTCTTA+TGG | + | chr5_1:893133-893152 | Msa0709760:intron | 45.0% | |
| TTTCATGCACTGCTTACCAG+CGG | + | chr5_1:893178-893197 | Msa0709760:CDS | 45.0% | |
| TGTTACTCTTACTGCGCCGT+TGG | + | chr5_1:890133-890152 | Msa0709760:CDS | 50.0% | |
| GGAGGAGAAAGAGAGAGGTA+GGG | - | chr5_1:890169-890188 | None:intergenic | 50.0% | |
| GATTGGGAGGAGAAAGAGAG+AGG | - | chr5_1:890174-890193 | None:intergenic | 50.0% | |
| ! | GGATGTGAATGGCGGAGATT+GGG | - | chr5_1:890190-890209 | None:intergenic | 50.0% |
| CGGAGGAAATGGGATGTGAA+TGG | - | chr5_1:890201-890220 | None:intergenic | 50.0% | |
| GTTACCGGTGAGAGGAGATT+CGG | - | chr5_1:890284-890303 | None:intergenic | 50.0% | |
| AATCGGATGAGTGGGGTTAC+CGG | - | chr5_1:890299-890318 | None:intergenic | 50.0% | |
| CATTGCTGAAATCAGGGGAC+AGG | + | chr5_1:890596-890615 | Msa0709760:CDS | 50.0% | |
| CTAAGCCGTCCATGAGAACA+AGG | + | chr5_1:890662-890681 | Msa0709760:CDS | 50.0% | |
| !!! | GGCTCGGGTTTTTTCTCATC+AGG | + | chr5_1:890819-890838 | Msa0709760:CDS | 50.0% |
| !! | AGGGCTCTAATGCCGACTTT+GGG | + | chr5_1:891167-891186 | Msa0709760:intron | 50.0% |
| GGGGACAGTAATTGAGACAG+TGG | + | chr5_1:891187-891206 | Msa0709760:intron | 50.0% | |
| !! | TAAGGGCATCTGCCATGATC+TGG | - | chr5_1:891791-891810 | None:intergenic | 50.0% |
| CTGCCATCAACAACCATGAG+TGG | - | chr5_1:891987-892006 | None:intergenic | 50.0% | |
| ! | TTCTTCCTTTTGCCCCATGC+TGG | - | chr5_1:892172-892191 | None:intergenic | 50.0% |
| TACCGTCGCCAAGTGTTCAA+AGG | + | chr5_1:892198-892217 | Msa0709760:CDS | 50.0% | |
| !! | CTTAGACAGTTCAGGTTGGG+TGG | + | chr5_1:892342-892361 | Msa0709760:intron | 50.0% |
| !! | TAGACAGTTCAGGTTGGGTG+GGG | + | chr5_1:892344-892363 | Msa0709760:intron | 50.0% |
| ATGTTTGTCGCGTGGCTGAA+AGG | + | chr5_1:892514-892533 | Msa0709760:intron | 50.0% | |
| TACACAAGAGGCTGCTTCCA+GGG | - | chr5_1:892554-892573 | None:intergenic | 50.0% | |
| TTACACAAGAGGCTGCTTCC+AGG | - | chr5_1:892555-892574 | None:intergenic | 50.0% | |
| CGAGAAGGGGTTCCACTATT+TGG | - | chr5_1:892606-892625 | None:intergenic | 50.0% | |
| TGTGGGATCTTTAGTGCACC+GGG | + | chr5_1:892637-892656 | Msa0709760:intron | 50.0% | |
| ! | ACCGGGCTGCCATTTATAAG+AGG | + | chr5_1:892654-892673 | Msa0709760:intron | 50.0% |
| CAATGCAGTGGGAACTTACC+TGG | - | chr5_1:892914-892933 | None:intergenic | 50.0% | |
| AAGAGTCGGATGAAGGGGAA+GGG | - | chr5_1:893009-893028 | None:intergenic | 50.0% | |
| AAAGAGTCGGATGAAGGGGA+AGG | - | chr5_1:893010-893029 | None:intergenic | 50.0% | |
| AACCATATGCCCAATGCAGG+TGG | + | chr5_1:893118-893137 | Msa0709760:intron | 50.0% | |
| ATCCACCTGCATTGGGCATA+TGG | - | chr5_1:893123-893142 | None:intergenic | 50.0% | |
| ! | CAAAGTCTTATGGATGCGGC+TGG | + | chr5_1:893143-893162 | Msa0709760:CDS | 50.0% |
| ! | TATGGATGCGGCTGGTTCAA+AGG | + | chr5_1:893151-893170 | Msa0709760:CDS | 50.0% |
| GCATTCGGTTCTCAGCTTGA+GGG | - | chr5_1:893259-893278 | None:intergenic | 50.0% | |
| TGCATTCGGTTCTCAGCTTG+AGG | - | chr5_1:893260-893279 | None:intergenic | 50.0% | |
| CCATGTACTTGGCAAGTAGC+CGG | + | chr5_1:893301-893320 | Msa0709760:exon | 50.0% | |
| AAGATTCAGCTGCCCTTCAG+TGG | - | chr5_1:893474-893493 | None:intergenic | 50.0% | |
| CGGCGCAGTAAGAGTAACAG+TGG | - | chr5_1:890132-890151 | None:intergenic | 55.0% | |
| GGGAGGAGAAAGAGAGAGGT+AGG | - | chr5_1:890170-890189 | None:intergenic | 55.0% | |
| ! | TGTGAATGGCGGAGATTGGG+AGG | - | chr5_1:890187-890206 | None:intergenic | 55.0% |
| ! | GGGATGTGAATGGCGGAGAT+TGG | - | chr5_1:890191-890210 | None:intergenic | 55.0% |
| CGGAGAGAGCAGAAGTTGCA+TGG | - | chr5_1:890261-890280 | None:intergenic | 55.0% | |
| ! | AGGAGCAACCGGCTTCACTT+CGG | + | chr5_1:890984-891003 | Msa0709760:intron | 55.0% |
| ! | AACCGGCTTCACTTCGGGAT+AGG | + | chr5_1:890990-891009 | Msa0709760:intron | 55.0% |
| ! | ACCGGCTTCACTTCGGGATA+GGG | + | chr5_1:890991-891010 | Msa0709760:intron | 55.0% |
| ACCCTATCCCGAAGTGAAGC+CGG | - | chr5_1:890995-891014 | None:intergenic | 55.0% | |
| !! | GAGGGCTCTAATGCCGACTT+TGG | + | chr5_1:891166-891185 | Msa0709760:intron | 55.0% |
| !! | GGGCTCTAATGCCGACTTTG+GGG | + | chr5_1:891168-891187 | Msa0709760:intron | 55.0% |
| GCATGCGCAACAATCGCAAG+AGG | - | chr5_1:891240-891259 | None:intergenic | 55.0% | |
| ACCTTCCGAGGACTTGGCAT+TGG | + | chr5_1:891493-891512 | Msa0709760:intron | 55.0% | |
| TGCTGCCAATGCCAAGTCCT+CGG | - | chr5_1:891501-891520 | None:intergenic | 55.0% | |
| CAACCATCCCTGCCAGATCA+TGG | + | chr5_1:891776-891795 | Msa0709760:CDS | 55.0% | |
| GCATCTGCCATGATCTGGCA+GGG | - | chr5_1:891786-891805 | None:intergenic | 55.0% | |
| GTTGAGAAGGCAAGGAAGGC+TGG | + | chr5_1:892069-892088 | Msa0709760:CDS | 55.0% | |
| TTCAGATGTCTGGGCCAGCA+TGG | + | chr5_1:892155-892174 | Msa0709760:CDS | 55.0% | |
| TCAGATGTCTGGGCCAGCAT+GGG | + | chr5_1:892156-892175 | Msa0709760:CDS | 55.0% | |
| !! | AGACAGTTCAGGTTGGGTGG+GGG | + | chr5_1:892345-892364 | Msa0709760:intron | 55.0% |
| ACATACGCAGGGTCCGAGAA+GGG | - | chr5_1:892620-892639 | None:intergenic | 55.0% | |
| TTCTCGGACCCTGCGTATGT+GGG | + | chr5_1:892620-892639 | Msa0709760:intron | 55.0% | |
| CCGGCTACTTGCCAAGTACA+TGG | - | chr5_1:893304-893323 | None:intergenic | 55.0% | |
| TCCGCCGAATCTCCTCTCAC+CGG | + | chr5_1:890277-890296 | Msa0709760:CDS | 60.0% | |
| ACCGGTGAGAGGAGATTCGG+CGG | - | chr5_1:890281-890300 | None:intergenic | 60.0% | |
| TGAGTGGGGTTACCGGTGAG+AGG | - | chr5_1:890292-890311 | None:intergenic | 60.0% | |
| ! | GGAGCAACCGGCTTCACTTC+GGG | + | chr5_1:890985-891004 | Msa0709760:intron | 60.0% |
| TGCAAACACGGGACCTTCCG+AGG | + | chr5_1:891481-891500 | Msa0709760:intron | 60.0% | |
| GCCAATGCCAAGTCCTCGGA+AGG | - | chr5_1:891497-891516 | None:intergenic | 60.0% | |
| CTGCCATGATCTGGCAGGGA+TGG | - | chr5_1:891782-891801 | None:intergenic | 60.0% | |
| GGCATCTGCCATGATCTGGC+AGG | - | chr5_1:891787-891806 | None:intergenic | 60.0% | |
| CAGATGTCTGGGCCAGCATG+GGG | + | chr5_1:892157-892176 | Msa0709760:CDS | 60.0% | |
| !! | AGTTCAGGTTGGGTGGGGGT+GGG | + | chr5_1:892349-892368 | Msa0709760:intron | 60.0% |
| GTCGCGTGGCTGAAAGGTCA+CGG | + | chr5_1:892520-892539 | Msa0709760:intron | 60.0% | |
| TCGCGTGGCTGAAAGGTCAC+GGG | + | chr5_1:892521-892540 | Msa0709760:intron | 60.0% | |
| AGGTCACGGGTTCAAGTCCC+TGG | + | chr5_1:892534-892553 | Msa0709760:intron | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | - | chr5_1:892619-892638 | None:intergenic | 60.0% | |
| CACATACGCAGGGTCCGAGA+AGG | - | chr5_1:892621-892640 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+TGG | + | chr5_1:892619-892638 | Msa0709760:intron | 60.0% | |
| ! | GAGGAAAGGAGGACTGGCAG+AGG | - | chr5_1:892686-892705 | None:intergenic | 60.0% |
| ACTGCTTACCAGCGGAGCGA+GGG | + | chr5_1:893186-893205 | Msa0709760:CDS | 60.0% | |
| CACGGGACCTTCCGAGGACT+TGG | + | chr5_1:891487-891506 | Msa0709760:intron | 65.0% | |
| CTGGGCCAGCATGGGGCAAA+AGG | + | chr5_1:892164-892183 | Msa0709760:CDS | 65.0% | |
| !! | CAGTTCAGGTTGGGTGGGGG+TGG | + | chr5_1:892348-892367 | Msa0709760:intron | 65.0% |
| AGGTTGGGTGGGGGTGGGAT+TGG | + | chr5_1:892354-892373 | Msa0709760:intron | 65.0% | |
| CACTGCTTACCAGCGGAGCG+AGG | + | chr5_1:893185-893204 | Msa0709760:CDS | 65.0% | |
| CTGCTTACCAGCGGAGCGAG+GGG | + | chr5_1:893187-893206 | Msa0709760:CDS | 65.0% | |
| GCGAGGGGTGGAAGTGACTG+AGG | + | chr5_1:893202-893221 | Msa0709760:CDS | 65.0% | |
| CTTACCAGCGGAGCGAGGGG+TGG | + | chr5_1:893190-893209 | Msa0709760:CDS | 70.0% | |
| ACTTCCACCCCTCGCTCCGC+TGG | - | chr5_1:893197-893216 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 890030 | 893680 | 890030 | ID=Msa0709760;Name=Msa0709760 |
| chr5_1 | mRNA | 890030 | 893680 | 890030 | ID=Msa0709760-mRNA-1;Parent=Msa0709760;Name=Msa0709760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=82|1|1|1|1|1|5|361|372 |
| chr5_1 | exon | 890030 | 890298 | 890030 | ID=Msa0709760-mRNA-1:exon:450;Parent=Msa0709760-mRNA-1 |
| chr5_1 | exon | 890500 | 890840 | 890500 | ID=Msa0709760-mRNA-1:exon:451;Parent=Msa0709760-mRNA-1 |
| chr5_1 | exon | 891717 | 891848 | 891717 | ID=Msa0709760-mRNA-1:exon:452;Parent=Msa0709760-mRNA-1 |
| chr5_1 | exon | 891952 | 892227 | 891952 | ID=Msa0709760-mRNA-1:exon:453;Parent=Msa0709760-mRNA-1 |
| chr5_1 | exon | 893137 | 893680 | 893137 | ID=Msa0709760-mRNA-1:exon:454;Parent=Msa0709760-mRNA-1 |
| chr5_1 | five_prime_UTR | 890030 | 890111 | 890030 | ID=Msa0709760-mRNA-1:five_prime_utr;Parent=Msa0709760-mRNA-1 |
| chr5_1 | CDS | 890112 | 890298 | 890112 | ID=Msa0709760-mRNA-1:cds;Parent=Msa0709760-mRNA-1 |
| chr5_1 | CDS | 890500 | 890840 | 890500 | ID=Msa0709760-mRNA-1:cds;Parent=Msa0709760-mRNA-1 |
| chr5_1 | CDS | 891717 | 891848 | 891717 | ID=Msa0709760-mRNA-1:cds;Parent=Msa0709760-mRNA-1 |
| chr5_1 | CDS | 891952 | 892227 | 891952 | ID=Msa0709760-mRNA-1:cds;Parent=Msa0709760-mRNA-1 |
| chr5_1 | CDS | 893137 | 893319 | 893137 | ID=Msa0709760-mRNA-1:cds;Parent=Msa0709760-mRNA-1 |
| chr5_1 | three_prime_UTR | 893320 | 893680 | 893320 | ID=Msa0709760-mRNA-1:three_prime_utr;Parent=Msa0709760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
