Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949960 | sp|Q9FR62|P23A_BRANA | 56.051 | 157 | 54 | 3 | 1 | 145 | 1 | 154 | 3.26e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949960 | G7KQ71 | 85.864 | 191 | 14 | 2 | 1 | 179 | 1 | 190 | 9.54e-96 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa0949960 | 0.808242 | 3.409281e-50 | -8.615850e-47 |
| Msa0030380 | Msa0949960 | 0.811465 | 6.907844e-51 | -8.615850e-47 |
| Msa0046750 | Msa0949960 | 0.804530 | 2.066961e-49 | -8.615850e-47 |
| Msa0669850 | Msa0949960 | 0.801646 | 8.160907e-49 | -8.615850e-47 |
| Msa0680240 | Msa0949960 | 0.819962 | 8.815098e-53 | -8.615850e-47 |
| Msa0734660 | Msa0949960 | 0.804563 | 2.034140e-49 | -8.615850e-47 |
| Msa0776220 | Msa0949960 | 0.806247 | 9.026541e-50 | -8.615850e-47 |
| Msa0813720 | Msa0949960 | 0.801539 | 8.583646e-49 | -8.615850e-47 |
| Msa0127820 | Msa0949960 | 0.806765 | 7.018008e-50 | -8.615850e-47 |
| Msa0173740 | Msa0949960 | 0.812423 | 4.272320e-51 | -8.615850e-47 |
| Msa0173820 | Msa0949960 | 0.819058 | 1.417355e-52 | -8.615850e-47 |
| Msa0173830 | Msa0949960 | 0.824441 | 8.057965e-54 | -8.615850e-47 |
| Msa0376510 | Msa0949960 | 0.806755 | 7.052733e-50 | -8.615850e-47 |
| Msa0402330 | Msa0949960 | 0.824198 | 9.191126e-54 | -8.615850e-47 |
| Msa0425050 | Msa0949960 | 0.813727 | 2.210767e-51 | -8.615850e-47 |
| Msa0264570 | Msa0949960 | 0.814044 | 1.882066e-51 | -8.615850e-47 |
| Msa0280490 | Msa0949960 | 0.805555 | 1.261348e-49 | -8.615850e-47 |
| Msa0355270 | Msa0949960 | 0.820652 | 6.125633e-53 | -8.615850e-47 |
| Msa0591770 | Msa0949960 | 0.800740 | 1.250949e-48 | -8.615850e-47 |
| Msa0912600 | Msa0949960 | 0.808226 | 3.436686e-50 | -8.615850e-47 |
| Msa0937550 | Msa0949960 | 0.808846 | 2.534061e-50 | -8.615850e-47 |
| Msa0949960 | Msa0970520 | 0.816041 | 6.783222e-52 | -8.615850e-47 |
| Msa0949960 | Msa1018790 | 0.808542 | 2.943036e-50 | -8.615850e-47 |
| Msa0949960 | Msa1040830 | 0.806090 | 9.739003e-50 | -8.615850e-47 |
| Msa0949960 | Msa1040890 | 0.801690 | 7.995207e-49 | -8.615850e-47 |
| Msa0949960 | Msa1082700 | 0.816682 | 4.877031e-52 | -8.615850e-47 |
| Msa0949960 | Msa1126510 | 0.800858 | 1.183042e-48 | -8.615850e-47 |
| Msa0949960 | Msa1126770 | 0.800103 | 1.685822e-48 | -8.615850e-47 |
| Msa0949960 | Msa1166860 | 0.807634 | 4.593972e-50 | -8.615850e-47 |
| Msa0949960 | Msa1171690 | 0.816196 | 6.265561e-52 | -8.615850e-47 |
| Msa0949960 | Msa1187840 | 0.807491 | 4.924442e-50 | -8.615850e-47 |
| Msa0949960 | Msa1249870 | 0.812111 | 4.997581e-51 | -8.615850e-47 |
| Msa0949960 | Msa1283170 | 0.801153 | 1.030011e-48 | -8.615850e-47 |
| Msa0949960 | Msa1284520 | 0.801003 | 1.105254e-48 | -8.615850e-47 |
| Msa0949960 | Msa1288170 | 0.810249 | 1.265989e-50 | -8.615850e-47 |
| Msa0949960 | Msa1288190 | 0.810544 | 1.093348e-50 | -8.615850e-47 |
| Msa0949960 | Msa1316780 | 0.805436 | 1.336046e-49 | -8.615850e-47 |
| Msa0949960 | Msa1316830 | 0.830026 | 3.701729e-55 | -8.615850e-47 |
| Msa0949960 | Msa1449880 | 0.821323 | 4.292096e-53 | -8.615850e-47 |
| Msa0949960 | Msa1453620 | 0.819834 | 9.429420e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949960 | MtrunA17_Chr6g0465301 | 85.864 | 191 | 14 | 2 | 1 | 179 | 1 | 190 | 1.84e-99 | 285 |
| Msa0949960 | MtrunA17_Chr1g0195701 | 40.331 | 181 | 83 | 5 | 1 | 168 | 1 | 169 | 8.06e-34 | 118 |
| Msa0949960 | MtrunA17_Chr7g0269271 | 45.370 | 108 | 47 | 1 | 1 | 96 | 1 | 108 | 6.22e-26 | 99.4 |
| Msa0949960 | MtrunA17_Chr6g0460991 | 42.593 | 108 | 51 | 1 | 1 | 97 | 1 | 108 | 3.34e-22 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949960 | AT3G03773.1 | 43.443 | 122 | 57 | 4 | 1 | 112 | 1 | 120 | 3.52e-24 | 92.8 |
| Msa0949960 | AT3G03773.3 | 44.144 | 111 | 52 | 3 | 1 | 101 | 1 | 111 | 1.15e-23 | 90.5 |
| Msa0949960 | AT3G03773.2 | 42.623 | 122 | 58 | 4 | 1 | 112 | 55 | 174 | 1.52e-22 | 90.1 |
| Msa0949960 | AT4G02450.2 | 40.179 | 112 | 54 | 2 | 1 | 100 | 1 | 111 | 5.78e-21 | 86.7 |
| Msa0949960 | AT4G02450.1 | 40.179 | 112 | 54 | 2 | 1 | 100 | 1 | 111 | 5.89e-21 | 86.7 |
Find 56 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGCAGAAGTTGAAAA+TGG | 0.226694 | 6_3:+37293073 | Msa0949960:intron |
| CTCGGGGTTAACTAGTTATT+CGG | 0.304968 | 6_3:+37293438 | Msa0949960:three_prime_UTR |
| AAACAAATAAATAACATTCT+TGG | 0.330839 | 6_3:-37293524 | None:intergenic |
| AGTTTCACATCTTGAGCATC+AGG | 0.380045 | 6_3:-37292319 | None:intergenic |
| TGGACAGTTCCTCAGACCTC+TGG | 0.387431 | 6_3:-37292282 | None:intergenic |
| AATGCCAGGAGTTGCTTCAT+TGG | 0.389069 | 6_3:-37293284 | None:intergenic |
| CCTTGTTGACATATATGAAA+TGG | 0.396815 | 6_3:+37293499 | Msa0949960:three_prime_UTR |
| TGTTATTTATTTGTTTATGT+TGG | 0.405380 | 6_3:+37293531 | Msa0949960:three_prime_UTR |
| GATCTGCTACCTGGTGAAAA+AGG | 0.411020 | 6_3:+37292743 | Msa0949960:CDS |
| TTTGCATCTGGCTCAATGCC+AGG | 0.414547 | 6_3:-37293298 | None:intergenic |
| TGAAAATTGATTGGGACAAG+TGG | 0.431993 | 6_3:+37292823 | Msa0949960:CDS |
| GCCGCCATCCAACAGTCAAA+TGG | 0.438700 | 6_3:+37292257 | Msa0949960:intron |
| AAAAGCGAACCTCATGTTGA+AGG | 0.453444 | 6_3:-37289341 | None:intergenic |
| CAACGTACCGAAAACCTTCT+CGG | 0.461333 | 6_3:+37293420 | Msa0949960:three_prime_UTR |
| ATCAGGCAACTCAACTGTTA+TGG | 0.464121 | 6_3:-37292302 | None:intergenic |
| CCGCCATCCAACAGTCAAAT+GGG | 0.472346 | 6_3:+37292258 | Msa0949960:CDS |
| GCTGCATCTGATAAGGACTT+TGG | 0.475911 | 6_3:+37292962 | Msa0949960:intron |
| AACGTACCGAAAACCTTCTC+GGG | 0.477715 | 6_3:+37293421 | Msa0949960:three_prime_UTR |
| TCTTTGCAGAAGTTGAAAAT+GGG | 0.488943 | 6_3:+37293074 | Msa0949960:intron |
| GGACAGTTCCTCAGACCTCT+GGG | 0.499020 | 6_3:-37292281 | None:intergenic |
| AGCTTTGGTGTCAGGTGCAA+CGG | 0.503127 | 6_3:-37293347 | None:intergenic |
| GGGCCCATTTGACTGTTGGA+TGG | 0.507654 | 6_3:-37292261 | None:intergenic |
| GTGGGACAGATTATTGAAGC+AGG | 0.510083 | 6_3:+37292779 | Msa0949960:CDS |
| GGCTTGGAACTTGATGCTGC+AGG | 0.513676 | 6_3:+37293107 | Msa0949960:CDS |
| GCAGAAGTTGAAAATGGGAG+GGG | 0.530803 | 6_3:+37293079 | Msa0949960:intron |
| AGATTAATGTCGACTTCATA+CGG | 0.542370 | 6_3:-37292400 | None:intergenic |
| TGATGAAAGTGACTTGGAAG+AGG | 0.544767 | 6_3:+37293255 | Msa0949960:CDS |
| AACAGATGATGAAAGTGACT+TGG | 0.547874 | 6_3:+37293249 | Msa0949960:intron |
| CAGAAGTTGAAAATGGGAGG+GGG | 0.552098 | 6_3:+37293080 | Msa0949960:intron |
| GATACCAATGAAGCAACTCC+TGG | 0.560216 | 6_3:+37293280 | Msa0949960:CDS |
| TGCAGAAGTTGAAAATGGGA+GGG | 0.562230 | 6_3:+37293078 | Msa0949960:intron |
| TTCGAGACAGATCTGCTACC+TGG | 0.562294 | 6_3:+37292734 | Msa0949960:CDS |
| TTGCAGAAGTTGAAAATGGG+AGG | 0.564443 | 6_3:+37293077 | Msa0949960:intron |
| ACTGCTAAGATTAAATGCAA+TGG | 0.574793 | 6_3:+37293653 | Msa0949960:three_prime_UTR |
| TGAAAGTGACTTGGAAGAGG+AGG | 0.577725 | 6_3:+37293258 | Msa0949960:CDS |
| CCCATTTGACTGTTGGATGG+CGG | 0.578083 | 6_3:-37292258 | None:intergenic |
| GATCTGTCTCGAACTAGCAC+TGG | 0.584788 | 6_3:-37292724 | None:intergenic |
| CCATTTCATATATGTCAACA+AGG | 0.589600 | 6_3:-37293499 | None:intergenic |
| TCACACAATCCTTCAACATG+AGG | 0.590675 | 6_3:+37289332 | Msa0949960:exon |
| TTGGGACAAGTGGGTTGATG+AGG | 0.594395 | 6_3:+37292833 | Msa0949960:CDS |
| GATGCTGCAGGCGATGATGA+TGG | 0.594716 | 6_3:+37293119 | Msa0949960:CDS |
| GAAAATTGATTGGGACAAGT+GGG | 0.596287 | 6_3:+37292824 | Msa0949960:CDS |
| ACAGATTATTGAAGCAGGGA+GGG | 0.600964 | 6_3:+37292784 | Msa0949960:CDS |
| AAAGGTCAATAGCAAATGGT+GGG | 0.604106 | 6_3:+37292761 | Msa0949960:CDS |
| AGATTAAATGCAATGGACAA+AGG | 0.614010 | 6_3:+37293660 | Msa0949960:three_prime_UTR |
| AAAAGGTCAATAGCAAATGG+TGG | 0.618545 | 6_3:+37292760 | Msa0949960:CDS |
| ATAACTAGTTAACCCCGAGA+AGG | 0.620106 | 6_3:-37293434 | None:intergenic |
| GGATGAATATTATGAACAAG+AGG | 0.632007 | 6_3:+37292854 | Msa0949960:CDS |
| AAACTCAAAGTTGAGCCAGA+GGG | 0.639802 | 6_3:+37292337 | Msa0949960:CDS |
| TGGGACAGATTATTGAAGCA+GGG | 0.645240 | 6_3:+37292780 | Msa0949960:CDS |
| TCAATAGTATCTGAGTTCAA+CGG | 0.658771 | 6_3:+37293601 | Msa0949960:intron |
| GAAACTCAAAGTTGAGCCAG+AGG | 0.667710 | 6_3:+37292336 | Msa0949960:CDS |
| GACAGATTATTGAAGCAGGG+AGG | 0.668438 | 6_3:+37292783 | Msa0949960:CDS |
| CAACAGTCAAATGGGCCCAG+AGG | 0.678788 | 6_3:+37292266 | Msa0949960:CDS |
| CAAATGGGCCCAGAGGTCTG+AGG | 0.699476 | 6_3:+37292273 | Msa0949960:CDS |
| ACGTACCGAAAACCTTCTCG+GGG | 0.715224 | 6_3:+37293422 | Msa0949960:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTGTTATATTTAATTA+TGG | + | chr6_3:37289700-37289719 | Msa0949960:intron | 10.0% |
| !! | TGATTGTTATATTTAATTAT+GGG | + | chr6_3:37289701-37289720 | Msa0949960:intron | 10.0% |
| !! | TTTATAATAATTGATACATT+TGG | + | chr6_3:37291952-37291971 | Msa0949960:intron | 10.0% |
| !!! | CATTTTTTTGTATTAATATC+TGG | + | chr6_3:37290338-37290357 | Msa0949960:intron | 15.0% |
| !!! | GATTTTTTTTTCTTTCTTTT+CGG | + | chr6_3:37290420-37290439 | Msa0949960:intron | 15.0% |
| !! | ATCAAATAATCATATCATTA+TGG | + | chr6_3:37290897-37290916 | Msa0949960:intron | 15.0% |
| !!! | ATATTTTTTCTTCCTATTTT+AGG | + | chr6_3:37291781-37291800 | Msa0949960:intron | 15.0% |
| !! | AAACAAATAAATAACATTCT+TGG | - | chr6_3:37293527-37293546 | None:intergenic | 15.0% |
| !!! | TGTTATTTATTTGTTTATGT+TGG | + | chr6_3:37293531-37293550 | Msa0949960:three_prime_UTR | 15.0% |
| !! | GAGTTCTACAAAAATAAAAA+AGG | - | chr6_3:37289617-37289636 | None:intergenic | 20.0% |
| !!! | ATTTTTGTAGAACTCAAATT+AGG | + | chr6_3:37289622-37289641 | Msa0949960:intron | 20.0% |
| !!! | TTTTTGTAGAACTCAAATTA+GGG | + | chr6_3:37289623-37289642 | Msa0949960:intron | 20.0% |
| !!! | AAATTAGGGTTTTAGAAATT+TGG | + | chr6_3:37289637-37289656 | Msa0949960:intron | 20.0% |
| !!! | TGATTTTCTCGAATTATTAT+TGG | + | chr6_3:37290046-37290065 | Msa0949960:intron | 20.0% |
| !! | TTCAAGTAAACTAATTGTTA+CGG | + | chr6_3:37290956-37290975 | Msa0949960:intron | 20.0% |
| !! | TTAATAATATAAGTGGTAAG+CGG | - | chr6_3:37291339-37291358 | None:intergenic | 20.0% |
| !! | TCTAAACTTAATAATGTAAG+TGG | - | chr6_3:37291385-37291404 | None:intergenic | 20.0% |
| !! | TTTACATTCATAACTAACTA+TGG | - | chr6_3:37291807-37291826 | None:intergenic | 20.0% |
| !! | TGAAAAGATAGAATTCATAA+CGG | - | chr6_3:37291912-37291931 | None:intergenic | 20.0% |
| !! | GAATTTAAAGATCTAAGTAT+TGG | - | chr6_3:37292218-37292237 | None:intergenic | 20.0% |
| !!! | TTGGATAATTTCTTTTTGAT+TGG | + | chr6_3:37292463-37292482 | Msa0949960:intron | 20.0% |
| !!! | TTCTTTTCTGAAAATTGATT+GGG | + | chr6_3:37292815-37292834 | Msa0949960:CDS | 20.0% |
| !! | TAAAAAAGTTGGCAATAAAT+CGG | - | chr6_3:37293154-37293173 | None:intergenic | 20.0% |
| !!! | ATTTATTGCCAACTTTTTTA+TGG | + | chr6_3:37293154-37293173 | Msa0949960:intron | 20.0% |
| !! | AATTTAAGCCATAAAAAAGT+TGG | - | chr6_3:37293165-37293184 | None:intergenic | 20.0% |
| !!! | ATCTCAAATTTTTTAAGCTT+TGG | - | chr6_3:37293365-37293384 | None:intergenic | 20.0% |
| ! | AAACAACGACAATAACAATA+AGG | - | chr6_3:37289504-37289523 | None:intergenic | 25.0% |
| !! | AAATGTAGTAAGTATTGCAT+TGG | - | chr6_3:37289831-37289850 | None:intergenic | 25.0% |
| ! | AATTAAAGGGTAATGTTAAC+CGG | - | chr6_3:37289881-37289900 | None:intergenic | 25.0% |
| ! | ATGTCAACATGATTATATGT+TGG | - | chr6_3:37290010-37290029 | None:intergenic | 25.0% |
| ! | TAAACTTGTCATGTATATCA+TGG | - | chr6_3:37290400-37290419 | None:intergenic | 25.0% |
| ! | AAAAATTGTCATACCAACAA+GGG | - | chr6_3:37290579-37290598 | None:intergenic | 25.0% |
| !! | AATTAGTTTACTTGAACTGT+TGG | - | chr6_3:37290952-37290971 | None:intergenic | 25.0% |
| ! | TAAACTAATTGTTACGGTAT+TGG | + | chr6_3:37290962-37290981 | Msa0949960:intron | 25.0% |
| ! | TCGTAGCTTAATAATATAAG+TGG | - | chr6_3:37291346-37291365 | None:intergenic | 25.0% |
| ! | GTTTAGATTTGTAAACATTG+TGG | + | chr6_3:37291398-37291417 | Msa0949960:intron | 25.0% |
| ! | AACATTATGAGCATTTATCT+TGG | + | chr6_3:37291453-37291472 | Msa0949960:intron | 25.0% |
| !!! | TATTTTGAGCCAAAAATTTG+AGG | + | chr6_3:37291483-37291502 | Msa0949960:intron | 25.0% |
| !! | ATTTTGAGCCAAAAATTTGA+GGG | + | chr6_3:37291484-37291503 | Msa0949960:intron | 25.0% |
| !! | AATTTACTCCCTCAAATTTT+TGG | - | chr6_3:37291495-37291514 | None:intergenic | 25.0% |
| ! | ACTAGAATTTCGTCTTAATT+AGG | + | chr6_3:37291527-37291546 | Msa0949960:intron | 25.0% |
| ! | CTAGAATTTCGTCTTAATTA+GGG | + | chr6_3:37291528-37291547 | Msa0949960:intron | 25.0% |
| ! | CTTAATATAATACAACCACA+AGG | - | chr6_3:37292185-37292204 | None:intergenic | 25.0% |
| ! | GGCTGTATTATAAAATTCAA+AGG | - | chr6_3:37292240-37292259 | None:intergenic | 25.0% |
| ! | AAAAGAAATTATCCAACTAC+TGG | - | chr6_3:37292459-37292478 | None:intergenic | 25.0% |
| !!! | TCTTTTTGATTGGATAATGT+TGG | + | chr6_3:37292473-37292492 | Msa0949960:intron | 25.0% |
| !! | CCATTTTCACAAAAAATTAC+TGG | - | chr6_3:37292556-37292575 | None:intergenic | 25.0% |
| !!! | CCAGTAATTTTTTGTGAAAA+TGG | + | chr6_3:37292553-37292572 | Msa0949960:intron | 25.0% |
| !! | CAATCAATTTTCAGAAAAGA+AGG | - | chr6_3:37292816-37292835 | None:intergenic | 25.0% |
| !!! | CTTCTTTTCTGAAAATTGAT+TGG | + | chr6_3:37292814-37292833 | Msa0949960:CDS | 25.0% |
| ! | CTTTTCTGTTCCAACATTTT+CGG | - | chr6_3:37289432-37289451 | None:intergenic | 30.0% |
| !!! | TTAGGGTTTTAGAAATTTGG+TGG | + | chr6_3:37289640-37289659 | Msa0949960:intron | 30.0% |
| ! | AAATTTGGTGGTAGGATAAT+GGG | + | chr6_3:37289652-37289671 | Msa0949960:intron | 30.0% |
| TAATTATGGGTCATGTTAAC+CGG | + | chr6_3:37289714-37289733 | Msa0949960:intron | 30.0% | |
| CAAAAATTGTCATACCAACA+AGG | - | chr6_3:37290580-37290599 | None:intergenic | 30.0% | |
| GTGTTTACATATGATATGAG+TGG | - | chr6_3:37290838-37290857 | None:intergenic | 30.0% | |
| TGTTGTTGTAATGTAAGTGA+TGG | + | chr6_3:37290858-37290877 | Msa0949960:intron | 30.0% | |
| GTTGTTGTAATGTAAGTGAT+GGG | + | chr6_3:37290859-37290878 | Msa0949960:intron | 30.0% | |
| TACTTCCTGAAACGATTTAT+TGG | - | chr6_3:37290999-37291018 | None:intergenic | 30.0% | |
| !!! | GCTTTGTTTTCATGAACTAT+AGG | + | chr6_3:37291063-37291082 | Msa0949960:intron | 30.0% |
| TATACTCTGTTGTTCAATAG+AGG | + | chr6_3:37291153-37291172 | Msa0949960:intron | 30.0% | |
| ATAGCAGAACATGAACTAAT+TGG | + | chr6_3:37291199-37291218 | Msa0949960:intron | 30.0% | |
| CTTATGTGATACTGTAATAG+TGG | - | chr6_3:37291739-37291758 | None:intergenic | 30.0% | |
| AACTAACTATGGCCTAAAAT+AGG | - | chr6_3:37291796-37291815 | None:intergenic | 30.0% | |
| !! | AACTATAATGTGACGGATAA+CGG | - | chr6_3:37292032-37292051 | None:intergenic | 30.0% |
| TTTCCTTTGATACATTACCT+TGG | + | chr6_3:37292080-37292099 | Msa0949960:intron | 30.0% | |
| ATAGAATATAAAACCAGCCA+AGG | - | chr6_3:37292100-37292119 | None:intergenic | 30.0% | |
| ! | AGAGGGAAAATTTTACTTCT+CGG | + | chr6_3:37292354-37292373 | Msa0949960:CDS | 30.0% |
| !! | AGATTAATGTCGACTTCATA+CGG | - | chr6_3:37292403-37292422 | None:intergenic | 30.0% |
| !! | ACAGCATTGATGTAAATGTA+AGG | + | chr6_3:37292428-37292447 | Msa0949960:intron | 30.0% |
| TGAAAAAGGTCAATAGCAAA+TGG | + | chr6_3:37292757-37292776 | Msa0949960:CDS | 30.0% | |
| GGATGAATATTATGAACAAG+AGG | + | chr6_3:37292854-37292873 | Msa0949960:CDS | 30.0% | |
| !!! | CTTTTGAAATCACTAACGTT+TGG | - | chr6_3:37292880-37292899 | None:intergenic | 30.0% |
| !! | AGTGATTTCAAAAGTATCTC+TGG | + | chr6_3:37292886-37292905 | Msa0949960:intron | 30.0% |
| ! | AAATGAACTTTTGTGTCAAG+AGG | - | chr6_3:37293054-37293073 | None:intergenic | 30.0% |
| TTCTTTGCAGAAGTTGAAAA+TGG | + | chr6_3:37293073-37293092 | Msa0949960:intron | 30.0% | |
| TCTTTGCAGAAGTTGAAAAT+GGG | + | chr6_3:37293074-37293093 | Msa0949960:intron | 30.0% | |
| TCAAAACTCAATTACAGTCA+TGG | - | chr6_3:37293210-37293229 | None:intergenic | 30.0% | |
| TCTGTTAGGAAAACAAATCA+AGG | - | chr6_3:37293235-37293254 | None:intergenic | 30.0% | |
| !!! | ATTTTTTAAGCTTTGGTGTC+AGG | - | chr6_3:37293358-37293377 | None:intergenic | 30.0% |
| CCATTTCATATATGTCAACA+AGG | - | chr6_3:37293502-37293521 | None:intergenic | 30.0% | |
| CCTTGTTGACATATATGAAA+TGG | + | chr6_3:37293499-37293518 | Msa0949960:three_prime_UTR | 30.0% | |
| TCAATAGTATCTGAGTTCAA+CGG | + | chr6_3:37293601-37293620 | Msa0949960:intron | 30.0% | |
| ACTGCTAAGATTAAATGCAA+TGG | + | chr6_3:37293653-37293672 | Msa0949960:three_prime_UTR | 30.0% | |
| AGATTAAATGCAATGGACAA+AGG | + | chr6_3:37293660-37293679 | Msa0949960:three_prime_UTR | 30.0% | |
| TTTCTCTCTTCCGAAAATGT+TGG | + | chr6_3:37289419-37289438 | Msa0949960:intron | 35.0% | |
| !!! | GGTTTTAGAAATTTGGTGGT+AGG | + | chr6_3:37289644-37289663 | Msa0949960:intron | 35.0% |
| ! | GAAATTTGGTGGTAGGATAA+TGG | + | chr6_3:37289651-37289670 | Msa0949960:intron | 35.0% |
| !!! | GTAGGATAATGGGTTTTCAT+TGG | + | chr6_3:37289662-37289681 | Msa0949960:intron | 35.0% |
| AGCTATGATTCCAAAACGTA+AGG | + | chr6_3:37289930-37289949 | Msa0949960:intron | 35.0% | |
| TGATTCCAAAACGTAAGGTT+AGG | + | chr6_3:37289935-37289954 | Msa0949960:intron | 35.0% | |
| ! | TTTTGAATCTTGTAGCCTCT+AGG | + | chr6_3:37290141-37290160 | Msa0949960:intron | 35.0% |
| TCTAACTCAAACTCGGTATA+CGG | - | chr6_3:37290260-37290279 | None:intergenic | 35.0% | |
| ! | TTACAGCTCTAACTCAAACT+CGG | - | chr6_3:37290267-37290286 | None:intergenic | 35.0% |
| ! | TGAGTCTATGTTCGTGATTT+TGG | + | chr6_3:37290314-37290333 | Msa0949960:intron | 35.0% |
| TAGAATATGATTACCTCTGG+TGG | - | chr6_3:37290461-37290480 | None:intergenic | 35.0% | |
| ACCAGAGGTAATCATATTCT+AGG | + | chr6_3:37290460-37290479 | Msa0949960:intron | 35.0% | |
| TCCTAGAATATGATTACCTC+TGG | - | chr6_3:37290464-37290483 | None:intergenic | 35.0% | |
| TATAGACTCTGTGAAAAGAC+TGG | - | chr6_3:37290663-37290682 | None:intergenic | 35.0% | |
| ! | TCTTTTCACAGAGTCTATAG+TGG | + | chr6_3:37290664-37290683 | Msa0949960:intron | 35.0% |
| TGAAGCCAATAAATCGTTTC+AGG | + | chr6_3:37290991-37291010 | Msa0949960:intron | 35.0% | |
| AAACAGCTATCACTCTTCAA+AGG | - | chr6_3:37291109-37291128 | None:intergenic | 35.0% | |
| TTGTTCAATAGAGGCTATAG+TGG | + | chr6_3:37291162-37291181 | Msa0949960:intron | 35.0% | |
| TATCACATAAGCACGTCTAA+AGG | + | chr6_3:37291748-37291767 | Msa0949960:intron | 35.0% | |
| ! | AAAGTAGAGCAAGTTGAACA+AGG | - | chr6_3:37291830-37291849 | None:intergenic | 35.0% |
| TCATGTGAGAAGAAGATCAA+TGG | - | chr6_3:37291866-37291885 | None:intergenic | 35.0% | |
| ! | GATAACGGTAATGCAAATCT+CGG | - | chr6_3:37292017-37292036 | None:intergenic | 35.0% |
| CAAGGGAAACTATAATGTGA+CGG | - | chr6_3:37292039-37292058 | None:intergenic | 35.0% | |
| CACATTATAGTTTCCCTTGT+TGG | + | chr6_3:37292040-37292059 | Msa0949960:intron | 35.0% | |
| ! | TGATAGTAAAGTGCCAACAA+GGG | - | chr6_3:37292056-37292075 | None:intergenic | 35.0% |
| ! | AAGCTTTTAACAGAGTCACA+GGG | - | chr6_3:37292131-37292150 | None:intergenic | 35.0% |
| ! | AAAGCTTTTAACAGAGTCAC+AGG | - | chr6_3:37292132-37292151 | None:intergenic | 35.0% |
| !! | GCTTTTTACTTTTGTCCTTG+TGG | + | chr6_3:37292167-37292186 | Msa0949960:intron | 35.0% |
| ! | GAGAAGTAAAATTTTCCCTC+TGG | - | chr6_3:37292355-37292374 | None:intergenic | 35.0% |
| AGCTGTTATCTATGAAACAC+TGG | + | chr6_3:37292502-37292521 | Msa0949960:intron | 35.0% | |
| ATCAAATAACCACCATCAAC+TGG | - | chr6_3:37292643-37292662 | None:intergenic | 35.0% | |
| AAAAGGTCAATAGCAAATGG+TGG | + | chr6_3:37292760-37292779 | Msa0949960:CDS | 35.0% | |
| AAAGGTCAATAGCAAATGGT+GGG | + | chr6_3:37292761-37292780 | Msa0949960:CDS | 35.0% | |
| TGAAAATTGATTGGGACAAG+TGG | + | chr6_3:37292823-37292842 | Msa0949960:CDS | 35.0% | |
| GAAAATTGATTGGGACAAGT+GGG | + | chr6_3:37292824-37292843 | Msa0949960:CDS | 35.0% | |
| !! | TTTTTCAGCTGCATCTGATA+AGG | + | chr6_3:37292955-37292974 | Msa0949960:intron | 35.0% |
| ! | AGTCACTTTCATCATCTGTT+AGG | - | chr6_3:37293249-37293268 | None:intergenic | 35.0% |
| AACAGATGATGAAAGTGACT+TGG | + | chr6_3:37293249-37293268 | Msa0949960:intron | 35.0% | |
| !!! | GAGATAGTTTTGACTGTGTA+AGG | + | chr6_3:37293380-37293399 | Msa0949960:three_prime_UTR | 35.0% |
| TCACACAATCCTTCAACATG+AGG | + | chr6_3:37289332-37289351 | Msa0949960:exon | 40.0% | |
| AAAAGCGAACCTCATGTTGA+AGG | - | chr6_3:37289344-37289363 | None:intergenic | 40.0% | |
| ATGAAGCAATGATGCAGGAA+TGG | - | chr6_3:37290099-37290118 | None:intergenic | 40.0% | |
| TTCCTGCATCATTGCTTCAT+AGG | + | chr6_3:37290099-37290118 | Msa0949960:intron | 40.0% | |
| AACCTATGAAGCAATGATGC+AGG | - | chr6_3:37290104-37290123 | None:intergenic | 40.0% | |
| TGCATCATTGCTTCATAGGT+TGG | + | chr6_3:37290103-37290122 | Msa0949960:intron | 40.0% | |
| ! | ATCATTGCTTCATAGGTTGG+TGG | + | chr6_3:37290106-37290125 | Msa0949960:intron | 40.0% |
| AGTCAGAGCGAATTCCTTTA+CGG | - | chr6_3:37290179-37290198 | None:intergenic | 40.0% | |
| TGAGTCATAGTGTGTGTTTG+TGG | + | chr6_3:37290362-37290381 | Msa0949960:intron | 40.0% | |
| AATATGATTACCTCTGGTGG+AGG | - | chr6_3:37290458-37290477 | None:intergenic | 40.0% | |
| AACATTAGTTCGCCACATTG+TGG | + | chr6_3:37290526-37290545 | Msa0949960:intron | 40.0% | |
| ACATTAGTTCGCCACATTGT+GGG | + | chr6_3:37290527-37290546 | Msa0949960:intron | 40.0% | |
| TTGTCATACCAACAAGGGTT+GGG | - | chr6_3:37290574-37290593 | None:intergenic | 40.0% | |
| ATTGTCATACCAACAAGGGT+TGG | - | chr6_3:37290575-37290594 | None:intergenic | 40.0% | |
| AGTCTATAGTGGCACTTTAG+TGG | + | chr6_3:37290675-37290694 | Msa0949960:intron | 40.0% | |
| ATTTAGCACAAACCGTTGAG+CGG | + | chr6_3:37290746-37290765 | Msa0949960:intron | 40.0% | |
| CACAAATCGTTGTCGAATAG+CGG | + | chr6_3:37291254-37291273 | Msa0949960:intron | 40.0% | |
| ATATAAGTGGTAAGCGGTGT+TGG | - | chr6_3:37291333-37291352 | None:intergenic | 40.0% | |
| TGTGGTAGTAGTGTAAGTGA+TGG | + | chr6_3:37291416-37291435 | Msa0949960:intron | 40.0% | |
| ! | CTGATAGTAAAGTGCCAACA+AGG | - | chr6_3:37292057-37292076 | None:intergenic | 40.0% |
| CAGCCAAGGTAATGTATCAA+AGG | - | chr6_3:37292086-37292105 | None:intergenic | 40.0% | |
| CTTTGATACATTACCTTGGC+TGG | + | chr6_3:37292084-37292103 | Msa0949960:intron | 40.0% | |
| ATCAGGCAACTCAACTGTTA+TGG | - | chr6_3:37292305-37292324 | None:intergenic | 40.0% | |
| AGTTTCACATCTTGAGCATC+AGG | - | chr6_3:37292322-37292341 | None:intergenic | 40.0% | |
| AAACTCAAAGTTGAGCCAGA+GGG | + | chr6_3:37292337-37292356 | Msa0949960:CDS | 40.0% | |
| ATCGAATGTGTTGTCAGTGT+TGG | + | chr6_3:37292580-37292599 | Msa0949960:intron | 40.0% | |
| AATAACCACCATCAACTGGT+TGG | - | chr6_3:37292639-37292658 | None:intergenic | 40.0% | |
| TTTCCAACATGTCCTGTAAC+CGG | + | chr6_3:37292670-37292689 | Msa0949960:intron | 40.0% | |
| GAGAAGACACATTAACACAC+CGG | - | chr6_3:37292692-37292711 | None:intergenic | 40.0% | |
| GTGTGTTAATGTGTCTTCTC+AGG | + | chr6_3:37292692-37292711 | Msa0949960:intron | 40.0% | |
| !! | TGCTATTGACCTTTTTCACC+AGG | - | chr6_3:37292755-37292774 | None:intergenic | 40.0% |
| TGGGACAGATTATTGAAGCA+GGG | + | chr6_3:37292780-37292799 | Msa0949960:CDS | 40.0% | |
| ACAGATTATTGAAGCAGGGA+GGG | + | chr6_3:37292784-37292803 | Msa0949960:CDS | 40.0% | |
| TTGCAGAAGTTGAAAATGGG+AGG | + | chr6_3:37293077-37293096 | Msa0949960:intron | 40.0% | |
| TGCAGAAGTTGAAAATGGGA+GGG | + | chr6_3:37293078-37293097 | Msa0949960:intron | 40.0% | |
| ! | TGATGAAAGTGACTTGGAAG+AGG | + | chr6_3:37293255-37293274 | Msa0949960:CDS | 40.0% |
| ATAACTAGTTAACCCCGAGA+AGG | - | chr6_3:37293437-37293456 | None:intergenic | 40.0% | |
| CTCGGGGTTAACTAGTTATT+CGG | + | chr6_3:37293438-37293457 | Msa0949960:three_prime_UTR | 40.0% | |
| CCACAAAAACTGAACTTGTC+AGG | - | chr6_3:37293465-37293484 | None:intergenic | 40.0% | |
| ! | CCTGACAAGTTCAGTTTTTG+TGG | + | chr6_3:37293462-37293481 | Msa0949960:three_prime_UTR | 40.0% |
| ! | ACAAGTTCAGTTTTTGTGGC+TGG | + | chr6_3:37293466-37293485 | Msa0949960:three_prime_UTR | 40.0% |
| ! | ACACGCCTAACCTTACGTTT+TGG | - | chr6_3:37289943-37289962 | None:intergenic | 45.0% |
| AATGGACACCAGACAAGACA+GGG | - | chr6_3:37290081-37290100 | None:intergenic | 45.0% | |
| !! | CTTCATAGGTTGGTGGTGTA+GGG | + | chr6_3:37290113-37290132 | Msa0949960:intron | 45.0% |
| GAGCGAATTCCTTTACGGAT+TGG | - | chr6_3:37290174-37290193 | None:intergenic | 45.0% | |
| GAATTCGCTCTGACTTCAGT+TGG | + | chr6_3:37290184-37290203 | Msa0949960:intron | 45.0% | |
| TTACATGTTTCCTCCACCAG+AGG | + | chr6_3:37290445-37290464 | Msa0949960:intron | 45.0% | |
| AATGTGTGTACCTCTCTAGC+TGG | + | chr6_3:37290497-37290516 | Msa0949960:intron | 45.0% | |
| ATGTGTGTACCTCTCTAGCT+GGG | + | chr6_3:37290498-37290517 | Msa0949960:intron | 45.0% | |
| TGTTTGAATCCCAGCTAGAG+AGG | - | chr6_3:37290510-37290529 | None:intergenic | 45.0% | |
| TCTGTGAAAAGACTGGTGTC+TGG | - | chr6_3:37290656-37290675 | None:intergenic | 45.0% | |
| GAAACTCAAAGTTGAGCCAG+AGG | + | chr6_3:37292336-37292355 | Msa0949960:CDS | 45.0% | |
| ! | TTTTACTTCTCGGCAACTGC+TGG | + | chr6_3:37292364-37292383 | Msa0949960:CDS | 45.0% |
| TGTAAGGTCTCACCAGTAGT+TGG | + | chr6_3:37292444-37292463 | Msa0949960:intron | 45.0% | |
| ! | CACATTAACACACCGGTTAC+AGG | - | chr6_3:37292685-37292704 | None:intergenic | 45.0% |
| GATCTGCTACCTGGTGAAAA+AGG | + | chr6_3:37292743-37292762 | Msa0949960:CDS | 45.0% | |
| GTGGGACAGATTATTGAAGC+AGG | + | chr6_3:37292779-37292798 | Msa0949960:CDS | 45.0% | |
| GACAGATTATTGAAGCAGGG+AGG | + | chr6_3:37292783-37292802 | Msa0949960:CDS | 45.0% | |
| GCTGCATCTGATAAGGACTT+TGG | + | chr6_3:37292962-37292981 | Msa0949960:intron | 45.0% | |
| GCAGAAGTTGAAAATGGGAG+GGG | + | chr6_3:37293079-37293098 | Msa0949960:intron | 45.0% | |
| CAGAAGTTGAAAATGGGAGG+GGG | + | chr6_3:37293080-37293099 | Msa0949960:intron | 45.0% | |
| ! | TGAAAGTGACTTGGAAGAGG+AGG | + | chr6_3:37293258-37293277 | Msa0949960:CDS | 45.0% |
| GATACCAATGAAGCAACTCC+TGG | + | chr6_3:37293280-37293299 | Msa0949960:CDS | 45.0% | |
| AATGCCAGGAGTTGCTTCAT+TGG | - | chr6_3:37293287-37293306 | None:intergenic | 45.0% | |
| ! | CTGACAGTGTCTTTTGCATC+TGG | - | chr6_3:37293313-37293332 | None:intergenic | 45.0% |
| CAACGTACCGAAAACCTTCT+CGG | + | chr6_3:37293420-37293439 | Msa0949960:three_prime_UTR | 45.0% | |
| AACGTACCGAAAACCTTCTC+GGG | + | chr6_3:37293421-37293440 | Msa0949960:three_prime_UTR | 45.0% | |
| ! | GTTAACCCCGAGAAGGTTTT+CGG | - | chr6_3:37293430-37293449 | None:intergenic | 45.0% |
| !!! | ATTTTAAAATTTCTTTTTTT+AGG | - | chr6_3:37289763-37289782 | None:intergenic | 5.0% |
| !! | TATTAAGATTAATAATTAAA+GGG | - | chr6_3:37289894-37289913 | None:intergenic | 5.0% |
| !! | ATATTAAGATTAATAATTAA+AGG | - | chr6_3:37289895-37289914 | None:intergenic | 5.0% |
| !! | TTTAATTATTAATCTTAATA+TGG | + | chr6_3:37289894-37289913 | Msa0949960:intron | 5.0% |
| TGCTTTCTTAACCAGTGCCC+CGG | + | chr6_3:37289850-37289869 | Msa0949960:intron | 50.0% | |
| GGTTAGGCGTGTCTTAGTGT+CGG | + | chr6_3:37289951-37289970 | Msa0949960:intron | 50.0% | |
| !! | CTTAGTGTCGGTGTTGGTGT+CGG | + | chr6_3:37289963-37289982 | Msa0949960:intron | 50.0% |
| !! | TTAGTGTCGGTGTTGGTGTC+GGG | + | chr6_3:37289964-37289983 | Msa0949960:intron | 50.0% |
| GAATGGACACCAGACAAGAC+AGG | - | chr6_3:37290082-37290101 | None:intergenic | 50.0% | |
| !! | GCTTCATAGGTTGGTGGTGT+AGG | + | chr6_3:37290112-37290131 | Msa0949960:intron | 50.0% |
| !! | ATAGGTTGGTGGTGTAGGGT+TGG | + | chr6_3:37290117-37290136 | Msa0949960:intron | 50.0% |
| !! | TAGGTTGGTGGTGTAGGGTT+GGG | + | chr6_3:37290118-37290137 | Msa0949960:intron | 50.0% |
| ! | GGTGTTGAGCCAATCCGTAA+AGG | + | chr6_3:37290162-37290181 | Msa0949960:intron | 50.0% |
| CTTCAGTTGGATCCCACTAG+TGG | + | chr6_3:37290197-37290216 | Msa0949960:intron | 50.0% | |
| !! | GACCTTCTGATTTGGGAGAC+CGG | - | chr6_3:37290232-37290251 | None:intergenic | 50.0% |
| CTCCCAAATCAGAAGGTCCT+TGG | + | chr6_3:37290234-37290253 | Msa0949960:intron | 50.0% | |
| GGCCAAGGACCTTCTGATTT+GGG | - | chr6_3:37290239-37290258 | None:intergenic | 50.0% | |
| TCAAACTCGGTATACGGCCA+AGG | - | chr6_3:37290254-37290273 | None:intergenic | 50.0% | |
| AAGGGTTGGGTCTAGCAGAA+GGG | - | chr6_3:37290561-37290580 | None:intergenic | 50.0% | |
| GTGAAAAGACTGGTGTCTGG+TGG | - | chr6_3:37290653-37290672 | None:intergenic | 50.0% | |
| CCCATTTGACTGTTGGATGG+CGG | - | chr6_3:37292261-37292280 | None:intergenic | 50.0% | |
| CCGCCATCCAACAGTCAAAT+GGG | + | chr6_3:37292258-37292277 | Msa0949960:CDS | 50.0% | |
| CACTTGCACATGTCAGACAC+TGG | + | chr6_3:37292604-37292623 | Msa0949960:intron | 50.0% | |
| CACGACTTCCAACCAGTTGA+TGG | + | chr6_3:37292628-37292647 | Msa0949960:intron | 50.0% | |
| !! | GACTTCCAACCAGTTGATGG+TGG | + | chr6_3:37292631-37292650 | Msa0949960:intron | 50.0% |
| ! | ACACCGGTTACAGGACATGT+TGG | - | chr6_3:37292676-37292695 | None:intergenic | 50.0% |
| GATCTGTCTCGAACTAGCAC+TGG | - | chr6_3:37292727-37292746 | None:intergenic | 50.0% | |
| TTCGAGACAGATCTGCTACC+TGG | + | chr6_3:37292734-37292753 | Msa0949960:CDS | 50.0% | |
| !! | TTGGGACAAGTGGGTTGATG+AGG | + | chr6_3:37292833-37292852 | Msa0949960:CDS | 50.0% |
| TTGAAAATGGGAGGGGGTGA+TGG | + | chr6_3:37293086-37293105 | Msa0949960:CDS | 50.0% | |
| ! | TTTGCATCTGGCTCAATGCC+AGG | - | chr6_3:37293301-37293320 | None:intergenic | 50.0% |
| !! | AGCTTTGGTGTCAGGTGCAA+CGG | - | chr6_3:37293350-37293369 | None:intergenic | 50.0% |
| ! | CGAGAAGGTTTTCGGTACGT+TGG | - | chr6_3:37293422-37293441 | None:intergenic | 50.0% |
| ACGTACCGAAAACCTTCTCG+GGG | + | chr6_3:37293422-37293441 | Msa0949960:three_prime_UTR | 50.0% | |
| GTCATGTTAACCGGTGCCCT+GGG | + | chr6_3:37289723-37289742 | Msa0949960:intron | 55.0% | |
| GGTTCCTTAACCAGTGCCCA+GGG | - | chr6_3:37289742-37289761 | None:intergenic | 55.0% | |
| AGGTTCCTTAACCAGTGCCC+AGG | - | chr6_3:37289743-37289762 | None:intergenic | 55.0% | |
| GCTTTCTTAACCAGTGCCCC+GGG | + | chr6_3:37289851-37289870 | Msa0949960:intron | 55.0% | |
| CTTTCTTAACCAGTGCCCCG+GGG | + | chr6_3:37289852-37289871 | Msa0949960:intron | 55.0% | |
| TTTCTTAACCAGTGCCCCGG+GGG | + | chr6_3:37289853-37289872 | Msa0949960:intron | 55.0% | |
| TAATGTTAACCGGTGCCCCC+GGG | - | chr6_3:37289871-37289890 | None:intergenic | 55.0% | |
| GTAATGTTAACCGGTGCCCC+CGG | - | chr6_3:37289872-37289891 | None:intergenic | 55.0% | |
| !! | GCGTGTCTTAGTGTCGGTGT+TGG | + | chr6_3:37289957-37289976 | Msa0949960:intron | 55.0% |
| ACCAGACAAGACAGGGACAC+TGG | - | chr6_3:37290074-37290093 | None:intergenic | 55.0% | |
| !! | CGGATTGGCTCAACACCTAG+AGG | - | chr6_3:37290159-37290178 | None:intergenic | 55.0% |
| ! | GGATCCCACTAGTGGACAGT+AGG | + | chr6_3:37290205-37290224 | Msa0949960:intron | 55.0% |
| CGGTCCTACTGTCCACTAGT+GGG | - | chr6_3:37290212-37290231 | None:intergenic | 55.0% | |
| ! | CCACTAGTGGACAGTAGGAC+CGG | + | chr6_3:37290210-37290229 | Msa0949960:intron | 55.0% |
| GACCGGTCTCCCAAATCAGA+AGG | + | chr6_3:37290227-37290246 | Msa0949960:intron | 55.0% | |
| CGGCCAAGGACCTTCTGATT+TGG | - | chr6_3:37290240-37290259 | None:intergenic | 55.0% | |
| GGGTCTAGACTCCCACAATG+TGG | - | chr6_3:37290541-37290560 | None:intergenic | 55.0% | |
| CAAGGGTTGGGTCTAGCAGA+AGG | - | chr6_3:37290562-37290581 | None:intergenic | 55.0% | |
| CTGCTAGACCCAACCCTTGT+TGG | + | chr6_3:37290563-37290582 | Msa0949960:intron | 55.0% | |
| GCCGCCATCCAACAGTCAAA+TGG | + | chr6_3:37292257-37292276 | Msa0949960:intron | 55.0% | |
| GGGCCCATTTGACTGTTGGA+TGG | - | chr6_3:37292264-37292283 | None:intergenic | 55.0% | |
| CTCTGGGCCCATTTGACTGT+TGG | - | chr6_3:37292268-37292287 | None:intergenic | 55.0% | |
| CAACAGTCAAATGGGCCCAG+AGG | + | chr6_3:37292266-37292285 | Msa0949960:CDS | 55.0% | |
| GGACAGTTCCTCAGACCTCT+GGG | - | chr6_3:37292284-37292303 | None:intergenic | 55.0% | |
| TGGACAGTTCCTCAGACCTC+TGG | - | chr6_3:37292285-37292304 | None:intergenic | 55.0% | |
| !! | TGGTGTTGACGTGTCGTGCT+TGG | - | chr6_3:37292536-37292555 | None:intergenic | 55.0% |
| GGCTTGGAACTTGATGCTGC+AGG | + | chr6_3:37293107-37293126 | Msa0949960:CDS | 55.0% | |
| GATGCTGCAGGCGATGATGA+TGG | + | chr6_3:37293119-37293138 | Msa0949960:CDS | 55.0% | |
| GGTCATGTTAACCGGTGCCC+TGG | + | chr6_3:37289722-37289741 | Msa0949960:intron | 60.0% | |
| TTAACCAGTGCCCAGGGCAC+CGG | - | chr6_3:37289736-37289755 | None:intergenic | 60.0% | |
| AATGTTAACCGGTGCCCCCG+GGG | - | chr6_3:37289870-37289889 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTTGGTGTCGGGT+TGG | + | chr6_3:37289968-37289987 | Msa0949960:intron | 60.0% |
| GCCAGTGTCCCTGTCTTGTC+TGG | + | chr6_3:37290070-37290089 | Msa0949960:intron | 60.0% | |
| CCGGTCCTACTGTCCACTAG+TGG | - | chr6_3:37290213-37290232 | None:intergenic | 60.0% | |
| GCGACAGCGCTGTCGCATAT+TGG | + | chr6_3:37290768-37290787 | Msa0949960:intron | 60.0% | |
| CAAATGGGCCCAGAGGTCTG+AGG | + | chr6_3:37292273-37292292 | Msa0949960:CDS | 60.0% | |
| ! | AATGGGAGGGGGTGATGGCT+TGG | + | chr6_3:37293091-37293110 | Msa0949960:CDS | 60.0% |
| TTAACCGGTGCCCTGGGCAC+TGG | + | chr6_3:37289729-37289748 | Msa0949960:intron | 65.0% | |
| !! | GGTGCCCTGGGCACTGGTTA+AGG | + | chr6_3:37289735-37289754 | Msa0949960:intron | 65.0% |
| ACAGCGCTGTCGCCGCTCAA+CGG | - | chr6_3:37290761-37290780 | None:intergenic | 65.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | chr6_3:37289859-37289878 | Msa0949960:intron | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | chr6_3:37289864-37289883 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 37289300 | 37293693 | 37289300 | ID=Msa0949960;Name=Msa0949960 |
| chr6_3 | mRNA | 37289300 | 37293693 | 37289300 | ID=Msa0949960-mRNA-1;Parent=Msa0949960;Name=Msa0949960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=49|0.83|0.85|1|0.83|0.71|7|287|179 |
| chr6_3 | exon | 37289300 | 37289353 | 37289300 | ID=Msa0949960-mRNA-1:exon:9172;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37292258 | 37292408 | 37292258 | ID=Msa0949960-mRNA-1:exon:9173;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37292714 | 37292882 | 37292714 | ID=Msa0949960-mRNA-1:exon:9174;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37292963 | 37293000 | 37292963 | ID=Msa0949960-mRNA-1:exon:9175;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37293083 | 37293140 | 37293083 | ID=Msa0949960-mRNA-1:exon:9176;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37293254 | 37293579 | 37293254 | ID=Msa0949960-mRNA-1:exon:9177;Parent=Msa0949960-mRNA-1 |
| chr6_3 | exon | 37293614 | 37293693 | 37293614 | ID=Msa0949960-mRNA-1:exon:9178;Parent=Msa0949960-mRNA-1 |
| chr6_3 | five_prime_UTR | 37289300 | 37289348 | 37289300 | ID=Msa0949960-mRNA-1:five_prime_utr;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37289349 | 37289353 | 37289349 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37292258 | 37292408 | 37292258 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37292714 | 37292882 | 37292714 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37292963 | 37293000 | 37292963 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37293083 | 37293140 | 37293083 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | CDS | 37293254 | 37293372 | 37293254 | ID=Msa0949960-mRNA-1:cds;Parent=Msa0949960-mRNA-1 |
| chr6_3 | three_prime_UTR | 37293373 | 37293579 | 37293373 | ID=Msa0949960-mRNA-1:three_prime_utr;Parent=Msa0949960-mRNA-1 |
| chr6_3 | three_prime_UTR | 37293614 | 37293693 | 37293614 | ID=Msa0949960-mRNA-1:three_prime_utr;Parent=Msa0949960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
