Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434940 | XP_013462138.1 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434940 | sp|Q43814|OTC_PEA | 88.000 | 375 | 42 | 1 | 1 | 372 | 1 | 375 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434940 | A0A072V483 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425940 | Msa0434940 | 0.817068 | 3.994926e-52 | -8.615850e-47 |
| Msa0426160 | Msa0434940 | 0.815099 | 1.099517e-51 | -8.615850e-47 |
| Msa0431430 | Msa0434940 | 0.813354 | 2.671359e-51 | -8.615850e-47 |
| Msa0434940 | Msa0510450 | 0.805267 | 1.449750e-49 | -8.615850e-47 |
| Msa0434940 | Msa0631450 | 0.802765 | 4.802608e-49 | -8.615850e-47 |
| Msa0434940 | Msa0709760 | 0.994436 | 3.102896e-207 | -8.615850e-47 |
| Msa0434940 | Msa0912600 | 0.802751 | 4.836045e-49 | -8.615850e-47 |
| Msa0434940 | Msa0946320 | 0.802148 | 6.436196e-49 | -8.615850e-47 |
| Msa0434940 | Msa0990520 | 0.801066 | 1.072847e-48 | -8.615850e-47 |
| Msa0434940 | Msa1243170 | 0.800673 | 1.290657e-48 | -8.615850e-47 |
| Msa0434940 | Msa1284520 | 0.817123 | 3.881473e-52 | -8.615850e-47 |
| Msa0434940 | Msa1337090 | 0.807713 | 4.419195e-50 | -8.615850e-47 |
| Msa0434940 | Msa1382310 | 0.809243 | 2.083827e-50 | -8.615850e-47 |
| Msa0434940 | Msa1449880 | 0.811979 | 5.339450e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434940 | MtrunA17_Chr3g0141741 | 96.505 | 372 | 10 | 1 | 1 | 372 | 1 | 369 | 0.0 | 744 |
| Msa0434940 | MtrunA17_Chr1g0155401 | 75.595 | 336 | 77 | 2 | 37 | 372 | 37 | 367 | 0.0 | 545 |
| Msa0434940 | MtrunA17_Chr5g0444701 | 28.614 | 332 | 212 | 12 | 49 | 366 | 57 | 377 | 2.49e-22 | 97.1 |
| Msa0434940 | MtrunA17_Chr4g0052321 | 29.180 | 305 | 194 | 10 | 78 | 370 | 39 | 333 | 5.00e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434940 | AT1G75330.1 | 76.786 | 336 | 78 | 0 | 36 | 371 | 39 | 374 | 0.0 | 540 |
| Msa0434940 | AT3G20330.1 | 28.869 | 336 | 212 | 11 | 47 | 370 | 67 | 387 | 1.09e-24 | 104 |
| Msa0434940 | AT3G20330.2 | 28.869 | 336 | 212 | 11 | 47 | 370 | 67 | 387 | 1.09e-24 | 104 |
Find 113 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATTGATAGCTTAAAAT+TGG | 0.214779 | 3_2:+87953901 | None:intergenic |
| CCAAGTGTTCAAAGGATTTC+AGG | 0.223509 | 3_2:-87955218 | Msa0434940:intron |
| CTTATTCATATAGTCTATTA+AGG | 0.225480 | 3_2:-87953771 | Msa0434940:three_prime_UTR |
| ATAGCTTAAAATTGGAAAAC+TGG | 0.262851 | 3_2:+87953909 | None:intergenic |
| AATAAATTGTTTCCGACTTT+AGG | 0.300565 | 3_2:-87954058 | Msa0434940:three_prime_UTR |
| GATCCAATAGAAGCTGTTAA+AGG | 0.304292 | 3_2:-87955307 | Msa0434940:CDS |
| GCTCCTTTAACAGCTTCTAT+TGG | 0.306544 | 3_2:+87955304 | None:intergenic |
| TGTGCTGAGTAAAGTGAAAA+TGG | 0.310696 | 3_2:-87957331 | Msa0434940:exon |
| CTTACTATGATTGAGCATAT+TGG | 0.330619 | 3_2:-87955617 | Msa0434940:CDS |
| TGAGGGAATACTATTGAATA+TGG | 0.338965 | 3_2:+87954185 | None:intergenic |
| ATGTTGTGTATTCAGATGTC+TGG | 0.339826 | 3_2:-87955279 | Msa0434940:CDS |
| GTCAAGACATTGCTGAAATC+AGG | 0.345748 | 3_2:-87956835 | Msa0434940:CDS |
| GCATCAGGTTCAAAACCTTT+TGG | 0.353201 | 3_2:+87955385 | None:intergenic |
| CGAAGAAGAAACGGAGGAAA+TGG | 0.360158 | 3_2:+87957215 | None:intergenic |
| TTTGTTTGTGCTTGTCCAAA+AGG | 0.370668 | 3_2:-87955400 | Msa0434940:CDS |
| GGGAGGAGAAAGAGAGAGGT+AGG | 0.374197 | 3_2:+87957257 | None:intergenic |
| GGGATGTGAATGGCGGAGAT+TGG | 0.378498 | 3_2:+87957236 | None:intergenic |
| GCAGGTGGATCAAAGTCTTA+TGG | 0.392884 | 3_2:-87954291 | Msa0434940:intron |
| GGATGTGAATGGCGGAGATT+GGG | 0.403006 | 3_2:+87957237 | None:intergenic |
| TCTGTCAATCCATTGATGAT+TGG | 0.406520 | 3_2:+87955674 | None:intergenic |
| CTGTCAATCCATTGATGATT+GGG | 0.407392 | 3_2:+87955675 | None:intergenic |
| GGTGGCCATGCTATTTACTT+AGG | 0.422127 | 3_2:-87956709 | Msa0434940:CDS |
| AGGACCTGATGACATTCAAA+TGG | 0.433277 | 3_2:-87956689 | Msa0434940:CDS |
| GAGCATATTGGTCGGTTTGA+AGG | 0.441335 | 3_2:-87955605 | Msa0434940:CDS |
| GACATTGTCTTCCCTTCAAA+AGG | 0.442663 | 3_2:+87956796 | None:intergenic |
| CCTGAAATCCTTTGAACACT+TGG | 0.444836 | 3_2:+87955218 | None:intergenic |
| TGTCCACTCATGGTTGTTGA+TGG | 0.446713 | 3_2:-87955443 | Msa0434940:CDS |
| CTGGGCCAGCATGGGGCAAA+AGG | 0.452623 | 3_2:-87955260 | Msa0434940:CDS |
| GCTATAATGCTCCATGTACT+TGG | 0.453359 | 3_2:-87954134 | Msa0434940:CDS |
| CAATATGCTCAATCATAGTA+AGG | 0.454172 | 3_2:+87955618 | None:intergenic |
| AAATGAAACCCTTGTTCTCA+TGG | 0.455161 | 3_2:+87956753 | None:intergenic |
| TAGTGTTCACTTGTAATAGT+TGG | 0.455266 | 3_2:-87954034 | Msa0434940:three_prime_UTR |
| TAAGGGCATCTGCCATGATC+TGG | 0.456920 | 3_2:+87955636 | None:intergenic |
| GTTGAGAAGGCAAGGAAGGC+TGG | 0.464381 | 3_2:-87955355 | Msa0434940:CDS |
| GATATTGTTCTGAGTGGAAA+TGG | 0.471099 | 3_2:+87957192 | None:intergenic |
| CAGGTTGTTTACGTTGGAGA+TGG | 0.472606 | 3_2:-87955475 | Msa0434940:CDS |
| TAGCCGGTTAGATGATATAT+TGG | 0.476017 | 3_2:-87954107 | Msa0434940:three_prime_UTR |
| GGCATCTGCCATGATCTGGC+AGG | 0.477854 | 3_2:+87955640 | None:intergenic |
| TGTTACTCTTACTGCGCCGT+TGG | 0.479100 | 3_2:-87957291 | Msa0434940:CDS |
| TCAGATGTCTGGGCCAGCAT+GGG | 0.479544 | 3_2:-87955268 | Msa0434940:CDS |
| TAATGACATTATCATGGCTC+GGG | 0.483139 | 3_2:-87956620 | Msa0434940:CDS |
| TTACCCATTTGAATGTCATC+AGG | 0.485259 | 3_2:+87956685 | None:intergenic |
| ACTTCCACCCCTCGCTCCGC+TGG | 0.493862 | 3_2:+87954230 | None:intergenic |
| GATATTAGATCGAGCTATTG+AGG | 0.495351 | 3_2:-87956857 | Msa0434940:CDS |
| GTTACCGGTGAGAGGAGATT+CGG | 0.496839 | 3_2:+87957143 | None:intergenic |
| TGCATTCGGTTCTCAGCTTG+AGG | 0.497081 | 3_2:+87954167 | None:intergenic |
| CTGCCATGATCTGGCAGGGA+TGG | 0.497703 | 3_2:+87955645 | None:intergenic |
| AGACCAATATATCATCTAAC+CGG | 0.498029 | 3_2:+87954104 | None:intergenic |
| CCGGCTACTTGCCAAGTACA+TGG | 0.499356 | 3_2:+87954123 | None:intergenic |
| TTCAGATGTCTGGGCCAGCA+TGG | 0.499913 | 3_2:-87955269 | Msa0434940:CDS |
| ACAAGGGTTTCATTTGAGAC+TGG | 0.507664 | 3_2:-87956745 | Msa0434940:CDS |
| TATGGATGCGGCTGGTTCAA+AGG | 0.508322 | 3_2:-87954273 | Msa0434940:CDS |
| CAACCATCCCTGCCAGATCA+TGG | 0.508342 | 3_2:-87955648 | Msa0434940:CDS |
| GGAGGAGAAAGAGAGAGGTA+GGG | 0.508712 | 3_2:+87957258 | None:intergenic |
| CAAGCACAAACAAAGTGAAA+AGG | 0.514178 | 3_2:+87955409 | None:intergenic |
| GCAACTGTCCCAATCATCAA+TGG | 0.517535 | 3_2:-87955683 | Msa0434940:CDS |
| ATAATGACATTATCATGGCT+CGG | 0.518928 | 3_2:-87956621 | Msa0434940:CDS |
| GCATTCGGTTCTCAGCTTGA+GGG | 0.522280 | 3_2:+87954168 | None:intergenic |
| AACAGTTGAGAAGGCAAGGA+AGG | 0.523900 | 3_2:-87955359 | Msa0434940:CDS |
| GAAGAAGAAACGGAGGAAAT+GGG | 0.527805 | 3_2:+87957216 | None:intergenic |
| CTAAGCCGTCCATGAGAACA+AGG | 0.529547 | 3_2:-87956762 | Msa0434940:CDS |
| ACTGCTTACCAGCGGAGCGA+GGG | 0.530384 | 3_2:-87954238 | Msa0434940:CDS |
| TAGCTTAAAATTGGAAAACT+GGG | 0.532486 | 3_2:+87953910 | None:intergenic |
| TCGTTATAATGACATTATCA+TGG | 0.532732 | 3_2:-87956626 | Msa0434940:CDS |
| TGTGAATGGCGGAGATTGGG+AGG | 0.534236 | 3_2:+87957240 | None:intergenic |
| GGACCTGATGACATTCAAAT+GGG | 0.535925 | 3_2:-87956688 | Msa0434940:CDS |
| TCAAGACATTGCTGAAATCA+GGG | 0.538060 | 3_2:-87956834 | Msa0434940:CDS |
| TGGAAATGGCGAAGAAGAAA+CGG | 0.539105 | 3_2:+87957206 | None:intergenic |
| GTATTATCACTAGCCACTGA+AGG | 0.539988 | 3_2:-87953966 | Msa0434940:three_prime_UTR |
| CACTGCTTACCAGCGGAGCG+AGG | 0.540194 | 3_2:-87954239 | Msa0434940:CDS |
| GGACGGCTTAGCAAATATCA+TGG | 0.540729 | 3_2:+87956774 | None:intergenic |
| GCATGTCAGGTTGTTTACGT+TGG | 0.547332 | 3_2:-87955481 | Msa0434940:intron |
| CAAAGTCTTATGGATGCGGC+TGG | 0.548039 | 3_2:-87954281 | Msa0434940:CDS |
| CCATGTACTTGGCAAGTAGC+CGG | 0.549707 | 3_2:-87954123 | Msa0434940:exon |
| CGGAGGAAATGGGATGTGAA+TGG | 0.550725 | 3_2:+87957226 | None:intergenic |
| GATTGGGAGGAGAAAGAGAG+AGG | 0.552857 | 3_2:+87957253 | None:intergenic |
| GTGCTGAGTAAAGTGAAAAT+GGG | 0.554153 | 3_2:-87957330 | Msa0434940:exon |
| CTGCTTACCAGCGGAGCGAG+GGG | 0.556312 | 3_2:-87954237 | Msa0434940:CDS |
| GAAATAATATTGTCCACTCA+TGG | 0.565147 | 3_2:-87955453 | Msa0434940:CDS |
| CGGAGAGAGCAGAAGTTGCA+TGG | 0.569724 | 3_2:+87957166 | None:intergenic |
| CATTGCTGAAATCAGGGGAC+AGG | 0.571303 | 3_2:-87956828 | Msa0434940:CDS |
| TACCGTCGCCAAGTGTTCAA+AGG | 0.573877 | 3_2:-87955226 | Msa0434940:CDS |
| CTTACCAGCGGAGCGAGGGG+TGG | 0.577236 | 3_2:-87954234 | Msa0434940:CDS |
| AAAATAGAAAATTAGATCAG+AGG | 0.579650 | 3_2:-87953809 | Msa0434940:three_prime_UTR |
| GGATCAAAGTCTTATGGATG+CGG | 0.579686 | 3_2:-87954285 | Msa0434940:CDS |
| ATCCTTTGAACACTTGGCGA+CGG | 0.584165 | 3_2:+87955224 | None:intergenic |
| GTAGGGTTTGTGTGATCCAA+CGG | 0.588209 | 3_2:+87957275 | None:intergenic |
| GAAACCCTTGTTCTCATGGA+CGG | 0.592363 | 3_2:+87956757 | None:intergenic |
| AAGATTCAGCTGCCCTTCAG+TGG | 0.592448 | 3_2:+87953953 | None:intergenic |
| TGTTGTGTATTCAGATGTCT+GGG | 0.593052 | 3_2:-87955278 | Msa0434940:CDS |
| TATTATCACTAGCCACTGAA+GGG | 0.598215 | 3_2:-87953965 | Msa0434940:three_prime_UTR |
| CTATGATTGAGCATATTGGT+CGG | 0.599286 | 3_2:-87955613 | Msa0434940:CDS |
| AATATGCTCAATCATAGTAA+GGG | 0.611377 | 3_2:+87955619 | None:intergenic |
| CAGATGTCTGGGCCAGCATG+GGG | 0.615087 | 3_2:-87955267 | Msa0434940:CDS |
| GCATCTGCCATGATCTGGCA+GGG | 0.615091 | 3_2:+87955641 | None:intergenic |
| CTGCCATCAACAACCATGAG+TGG | 0.620696 | 3_2:+87955440 | None:intergenic |
| AGTGAACACTAGCCTAAAGT+CGG | 0.626682 | 3_2:+87954046 | None:intergenic |
| TGAGTGGGGTTACCGGTGAG+AGG | 0.628022 | 3_2:+87957135 | None:intergenic |
| TTGGAGTATAATAATAAGTG+AGG | 0.628443 | 3_2:-87957392 | Msa0434940:five_prime_UTR |
| TCCGCCGAATCTCCTCTCAC+CGG | 0.629659 | 3_2:-87957147 | Msa0434940:intron |
| TGGTCGGTTTGAAGGAACAA+AGG | 0.634562 | 3_2:-87955597 | Msa0434940:intron |
| GCGAGGGGTGGAAGTGACTG+AGG | 0.634700 | 3_2:-87954222 | Msa0434940:CDS |
| CATTCAAATGGGTAAGCGAG+AGG | 0.652099 | 3_2:-87956677 | Msa0434940:CDS |
| ACCGGTGAGAGGAGATTCGG+CGG | 0.653909 | 3_2:+87957146 | None:intergenic |
| GTGAAAATGGGTGTGATGAG+TGG | 0.655754 | 3_2:-87957318 | Msa0434940:exon |
| CAGGTCCTAAGTAAATAGCA+TGG | 0.658976 | 3_2:+87956704 | None:intergenic |
| CGGCGCAGTAAGAGTAACAG+TGG | 0.662083 | 3_2:+87957295 | None:intergenic |
| CAAGACATTGCTGAAATCAG+GGG | 0.670685 | 3_2:-87956833 | Msa0434940:CDS |
| TTTCATGCACTGCTTACCAG+CGG | 0.673751 | 3_2:-87954246 | Msa0434940:CDS |
| AGGAAATGGGATGTGAATGG+CGG | 0.675402 | 3_2:+87957229 | None:intergenic |
| TGGCATGATATTGTTCTGAG+TGG | 0.683484 | 3_2:+87957186 | None:intergenic |
| AAATGGCGAAGAAGAAACGG+AGG | 0.721906 | 3_2:+87957209 | None:intergenic |
| TAAGCCGTCCATGAGAACAA+GGG | 0.723620 | 3_2:-87956761 | Msa0434940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTAATCTAATTATT+AGG | - | chr3_2:87954068-87954087 | Msa0434940:three_prime_UTR | 10.0% |
| !!! | CATTTTTAATCTAATTATTA+GGG | - | chr3_2:87954069-87954088 | Msa0434940:three_prime_UTR | 10.0% |
| !!! | AGTTATATTTGATATTGTTT+TGG | - | chr3_2:87954625-87954644 | Msa0434940:intron | 15.0% |
| !! | ATTCAATTGAAATTTGAAAA+AGG | + | chr3_2:87954681-87954700 | None:intergenic | 15.0% |
| !! | TAAGTTTAATTCTTGAATTA+AGG | - | chr3_2:87954798-87954817 | Msa0434940:intron | 15.0% |
| !! | CAAATAATTAAAATGAAAAG+GGG | + | chr3_2:87955430-87955449 | None:intergenic | 15.0% |
| !! | GCAAATAATTAAAATGAAAA+GGG | + | chr3_2:87955431-87955450 | None:intergenic | 15.0% |
| !! | TGCAAATAATTAAAATGAAA+AGG | + | chr3_2:87955432-87955451 | None:intergenic | 15.0% |
| !!! | TTTTCATTTTAATTATTTGC+AGG | - | chr3_2:87955431-87955450 | Msa0434940:CDS | 15.0% |
| !!! | AATTTTCTATTTTGGAAAAT+TGG | + | chr3_2:87957344-87957363 | None:intergenic | 15.0% |
| !! | ATGAAATCTTAAACTAGAAT+CGG | + | chr3_2:87954052-87954071 | None:intergenic | 20.0% |
| !! | CAAGTTATTTAAATCAAGAT+TGG | + | chr3_2:87954129-87954148 | None:intergenic | 20.0% |
| !!! | CTGAAATATTTTGATATTAG+TGG | - | chr3_2:87955262-87955281 | Msa0434940:CDS | 20.0% |
| !! | AGGTACTTAATATAATATTG+TGG | - | chr3_2:87955962-87955981 | Msa0434940:intron | 20.0% |
| !!! | TCACAAAATATAGTGTTTTT+GGG | - | chr3_2:87955985-87956004 | Msa0434940:intron | 20.0% |
| !!! | TTAAAACAAAGTGTTATTGT+GGG | - | chr3_2:87956133-87956152 | Msa0434940:intron | 20.0% |
| !!! | GAAATGATTTATCTTTTGTA+TGG | - | chr3_2:87956195-87956214 | Msa0434940:intron | 20.0% |
| !!! | TCTGATCTAATTTTCTATTT+TGG | + | chr3_2:87957352-87957371 | None:intergenic | 20.0% |
| !! | AAAATAGAAAATTAGATCAG+AGG | - | chr3_2:87957351-87957370 | Msa0434940:five_prime_UTR | 20.0% |
| !! | CTTATTCATATAGTCTATTA+AGG | - | chr3_2:87957389-87957408 | Msa0434940:five_prime_UTR | 20.0% |
| ! | TTGGAGTATAATAATAAGTG+AGG | - | chr3_2:87953768-87953787 | Msa0434940:three_prime_UTR | 25.0% |
| ! | TATACTCAAACAGAAAAAGT+TGG | - | chr3_2:87954223-87954242 | Msa0434940:CDS | 25.0% |
| ! | AAACAGAAAAAGTTGGAAAT+GGG | - | chr3_2:87954230-87954249 | Msa0434940:CDS | 25.0% |
| !!! | TCACATAGATGATTTTGATA+AGG | - | chr3_2:87954267-87954286 | Msa0434940:CDS | 25.0% |
| ! | TCGTTATAATGACATTATCA+TGG | - | chr3_2:87954534-87954553 | Msa0434940:intron | 25.0% |
| ! | TTCAATGAACAACTTTCATA+GGG | - | chr3_2:87954770-87954789 | Msa0434940:intron | 25.0% |
| !!! | ATTAAGGATTTGCTTTTAAG+AGG | - | chr3_2:87954814-87954833 | Msa0434940:intron | 25.0% |
| ! | AATATGCTCAATCATAGTAA+GGG | + | chr3_2:87955544-87955563 | None:intergenic | 25.0% |
| !! | GTCACAAAATATAGTGTTTT+TGG | - | chr3_2:87955984-87956003 | Msa0434940:intron | 25.0% |
| !! | GTTAAAACAAAGTGTTATTG+TGG | - | chr3_2:87956132-87956151 | Msa0434940:intron | 25.0% |
| ! | TATTTCTTTGTTACAAATGG+AGG | + | chr3_2:87956472-87956491 | None:intergenic | 25.0% |
| ! | TCCATTTGTAACAAAGAAAT+AGG | - | chr3_2:87956471-87956490 | Msa0434940:intron | 25.0% |
| !! | TCCTATTTCTTTGTTACAAA+TGG | + | chr3_2:87956475-87956494 | None:intergenic | 25.0% |
| ! | GTATTTCATATTCATCAACT+TGG | + | chr3_2:87956509-87956528 | None:intergenic | 25.0% |
| ! | ATGTGAATAGACTAGTATTT+AGG | - | chr3_2:87956565-87956584 | Msa0434940:intron | 25.0% |
| ! | ATGCCACAAAATCAAAATAA+TGG | + | chr3_2:87956778-87956797 | None:intergenic | 25.0% |
| ! | AATAAATTGTTTCCGACTTT+AGG | - | chr3_2:87957102-87957121 | Msa0434940:intron | 25.0% |
| ! | TAGCTTAAAATTGGAAAACT+GGG | + | chr3_2:87957253-87957272 | None:intergenic | 25.0% |
| ! | ATAGCTTAAAATTGGAAAAC+TGG | + | chr3_2:87957254-87957273 | None:intergenic | 25.0% |
| !! | TGTGATTGATAGCTTAAAAT+TGG | + | chr3_2:87957262-87957281 | None:intergenic | 25.0% |
| !!! | ACACTGTCATTTTTTGATTT+GGG | - | chr3_2:87957279-87957298 | Msa0434940:CDS | 25.0% |
| !!! | TGTTTTGAGTTTTGAACAAC+TGG | - | chr3_2:87954147-87954166 | Msa0434940:CDS | 30.0% |
| !!! | GTTTTGAGTTTTGAACAACT+GGG | - | chr3_2:87954148-87954167 | Msa0434940:CDS | 30.0% |
| CAAACAGAAAAAGTTGGAAA+TGG | - | chr3_2:87954229-87954248 | Msa0434940:CDS | 30.0% | |
| ATAATGACATTATCATGGCT+CGG | - | chr3_2:87954539-87954558 | Msa0434940:intron | 30.0% | |
| AGGAAATATAAGCACAAGAA+TGG | + | chr3_2:87954661-87954680 | None:intergenic | 30.0% | |
| GTTCAATGAACAACTTTCAT+AGG | - | chr3_2:87954769-87954788 | Msa0434940:intron | 30.0% | |
| TCAATGAACAACTTTCATAG+GGG | - | chr3_2:87954771-87954790 | Msa0434940:intron | 30.0% | |
| ! | CAGGTTTTTACAATCAAACT+TGG | + | chr3_2:87955022-87955041 | None:intergenic | 30.0% |
| TTATCTACAAGCAATTATCC+TGG | + | chr3_2:87955045-87955064 | None:intergenic | 30.0% | |
| TTACTCTTTCAATTTACGCA+TGG | + | chr3_2:87955086-87955105 | None:intergenic | 30.0% | |
| GGATTTATGTAATGCAAACA+CGG | - | chr3_2:87955205-87955224 | Msa0434940:intron | 30.0% | |
| GATTTATGTAATGCAAACAC+GGG | - | chr3_2:87955206-87955225 | Msa0434940:intron | 30.0% | |
| !! | TGGCCTCTTAAAATTTTAGT+GGG | - | chr3_2:87955282-87955301 | Msa0434940:CDS | 30.0% |
| ! | AAGCCCACTAAAATTTTAAG+AGG | + | chr3_2:87955288-87955307 | None:intergenic | 30.0% |
| CAATATGCTCAATCATAGTA+AGG | + | chr3_2:87955545-87955564 | None:intergenic | 30.0% | |
| CTTACTATGATTGAGCATAT+TGG | - | chr3_2:87955543-87955562 | Msa0434940:intron | 30.0% | |
| ! | TGTTGTTTGTCTTGAAAAGT+AGG | - | chr3_2:87955594-87955613 | Msa0434940:intron | 30.0% |
| GACATGCATATCATAGAATA+TGG | + | chr3_2:87955666-87955685 | None:intergenic | 30.0% | |
| TATTCTATGATATGCATGTC+AGG | - | chr3_2:87955666-87955685 | Msa0434940:CDS | 30.0% | |
| GAAATAATATTGTCCACTCA+TGG | - | chr3_2:87955707-87955726 | Msa0434940:CDS | 30.0% | |
| AGGATCAAACCTCTTATAAA+TGG | + | chr3_2:87956402-87956421 | None:intergenic | 30.0% | |
| ACTTGTTCACACTTAGATTT+CGG | - | chr3_2:87956602-87956621 | Msa0434940:intron | 30.0% | |
| TATTTATGGAACAATGCAGT+GGG | + | chr3_2:87956661-87956680 | None:intergenic | 30.0% | |
| GCATTGTTCCATAAATAGTT+AGG | - | chr3_2:87956664-87956683 | Msa0434940:CDS | 30.0% | |
| CCTAAGTTCCTAACTATTTA+TGG | + | chr3_2:87956675-87956694 | None:intergenic | 30.0% | |
| CCATAAATAGTTAGGAACTT+AGG | - | chr3_2:87956672-87956691 | Msa0434940:CDS | 30.0% | |
| AAAATAAAGAGTCGGATGAA+GGG | + | chr3_2:87956751-87956770 | None:intergenic | 30.0% | |
| AAAAATAAAGAGTCGGATGA+AGG | + | chr3_2:87956752-87956771 | None:intergenic | 30.0% | |
| ATGGCAGAAAAATAAAGAGT+CGG | + | chr3_2:87956759-87956778 | None:intergenic | 30.0% | |
| !!! | CTGCCATTATTTTGATTTTG+TGG | - | chr3_2:87956772-87956791 | Msa0434940:CDS | 30.0% |
| TGAGGGAATACTATTGAATA+TGG | + | chr3_2:87956978-87956997 | None:intergenic | 30.0% | |
| AGACCAATATATCATCTAAC+CGG | + | chr3_2:87957059-87957078 | None:intergenic | 30.0% | |
| TAGTGTTCACTTGTAATAGT+TGG | - | chr3_2:87957126-87957145 | Msa0434940:intron | 30.0% | |
| !!! | CACTTGTAATAGTTGGTTTT+AGG | - | chr3_2:87957133-87957152 | Msa0434940:intron | 30.0% |
| !!! | TAATAGTTGGTTTTAGGCTT+CGG | - | chr3_2:87957139-87957158 | Msa0434940:intron | 30.0% |
| !!! | CACACTGTCATTTTTTGATT+TGG | - | chr3_2:87957278-87957297 | Msa0434940:CDS | 30.0% |
| !!! | CACTGTCATTTTTTGATTTG+GGG | - | chr3_2:87957280-87957299 | Msa0434940:CDS | 30.0% |
| TGTGCTGAGTAAAGTGAAAA+TGG | - | chr3_2:87953829-87953848 | Msa0434940:three_prime_UTR | 35.0% | |
| GTGCTGAGTAAAGTGAAAAT+GGG | - | chr3_2:87953830-87953849 | Msa0434940:three_prime_UTR | 35.0% | |
| ! | GATATTGTTCTGAGTGGAAA+TGG | + | chr3_2:87953971-87953990 | None:intergenic | 35.0% |
| TAAACTAGAATCGGATGAGT+GGG | + | chr3_2:87954043-87954062 | None:intergenic | 35.0% | |
| TTAAACTAGAATCGGATGAG+TGG | + | chr3_2:87954044-87954063 | None:intergenic | 35.0% | |
| GATATTAGATCGAGCTATTG+AGG | - | chr3_2:87954303-87954322 | Msa0434940:intron | 35.0% | |
| TCAAGACATTGCTGAAATCA+GGG | - | chr3_2:87954326-87954345 | Msa0434940:intron | 35.0% | |
| AAATGAAACCCTTGTTCTCA+TGG | + | chr3_2:87954410-87954429 | None:intergenic | 35.0% | |
| TTACCCATTTGAATGTCATC+AGG | + | chr3_2:87954478-87954497 | None:intergenic | 35.0% | |
| TAATGACATTATCATGGCTC+GGG | - | chr3_2:87954540-87954559 | Msa0434940:intron | 35.0% | |
| !! | AAGGATTTGCTTTTAAGAGG+TGG | - | chr3_2:87954817-87954836 | Msa0434940:intron | 35.0% |
| !! | AGGATTTGCTTTTAAGAGGT+GGG | - | chr3_2:87954818-87954837 | Msa0434940:intron | 35.0% |
| ACAATCGCAAGAGGATATAA+AGG | + | chr3_2:87954967-87954986 | None:intergenic | 35.0% | |
| TTTGATTGTAAAAACCTGCC+AGG | - | chr3_2:87955024-87955043 | Msa0434940:intron | 35.0% | |
| GTTAACTGAAGAACAATACG+TGG | - | chr3_2:87955138-87955157 | Msa0434940:intron | 35.0% | |
| ATAGATTGTGTGTGCAATGT+TGG | - | chr3_2:87955184-87955203 | Msa0434940:intron | 35.0% | |
| ! | GTGGCCTCTTAAAATTTTAG+TGG | - | chr3_2:87955281-87955300 | Msa0434940:CDS | 35.0% |
| !! | TACAAGACTTGCTATCTGAT+TGG | - | chr3_2:87955339-87955358 | Msa0434940:CDS | 35.0% |
| !! | ACAAGACTTGCTATCTGATT+GGG | - | chr3_2:87955340-87955359 | Msa0434940:CDS | 35.0% |
| CATCAATAAACGTGCACTTT+CGG | - | chr3_2:87955399-87955418 | Msa0434940:CDS | 35.0% | |
| ! | CTGTCAATCCATTGATGATT+GGG | + | chr3_2:87955488-87955507 | None:intergenic | 35.0% |
| ! | TCTGTCAATCCATTGATGAT+TGG | + | chr3_2:87955489-87955508 | None:intergenic | 35.0% |
| CTATGATTGAGCATATTGGT+CGG | - | chr3_2:87955547-87955566 | Msa0434940:intron | 35.0% | |
| GTAGGCTTCTTTCTAATTCT+TGG | - | chr3_2:87955612-87955631 | Msa0434940:CDS | 35.0% | |
| GCATATCATAGAATATGGTC+AGG | + | chr3_2:87955661-87955680 | None:intergenic | 35.0% | |
| CAAGCACAAACAAAGTGAAA+AGG | + | chr3_2:87955754-87955773 | None:intergenic | 35.0% | |
| TTTGTTTGTGCTTGTCCAAA+AGG | - | chr3_2:87955760-87955779 | Msa0434940:intron | 35.0% | |
| !!! | TTCTCAACTGTTTTTGCATC+AGG | + | chr3_2:87955793-87955812 | None:intergenic | 35.0% |
| TGATGCAAAAACAGTTGAGA+AGG | - | chr3_2:87955792-87955811 | Msa0434940:intron | 35.0% | |
| GATCCAATAGAAGCTGTTAA+AGG | - | chr3_2:87955853-87955872 | Msa0434940:intron | 35.0% | |
| ATGTTGTGTATTCAGATGTC+TGG | - | chr3_2:87955881-87955900 | Msa0434940:intron | 35.0% | |
| TGTTGTGTATTCAGATGTCT+GGG | - | chr3_2:87955882-87955901 | Msa0434940:intron | 35.0% | |
| ! | ATTCTTTTACTGTAGCCATC+TGG | - | chr3_2:87956048-87956067 | Msa0434940:intron | 35.0% |
| TGTCTAAGCTAAATTCCAGA+TGG | + | chr3_2:87956066-87956085 | None:intergenic | 35.0% | |
| ! | GAATTTAGCTTAGACAGTTC+AGG | - | chr3_2:87956070-87956089 | Msa0434940:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr3_2:87956297-87956316 | Msa0434940:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr3_2:87956302-87956321 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr3_2:87956302-87956321 | Msa0434940:intron | 35.0% | |
| !! | AACAGCAACTTTTATTTCCC+AGG | - | chr3_2:87956629-87956648 | Msa0434940:CDS | 35.0% |
| CTATTTATGGAACAATGCAG+TGG | + | chr3_2:87956662-87956681 | None:intergenic | 35.0% | |
| AAATAAAGAGTCGGATGAAG+GGG | + | chr3_2:87956750-87956769 | None:intergenic | 35.0% | |
| ! | TAGCATTTTGTGCATGCATT+CGG | + | chr3_2:87957010-87957029 | None:intergenic | 35.0% |
| TAGCCGGTTAGATGATATAT+TGG | - | chr3_2:87957053-87957072 | Msa0434940:intron | 35.0% | |
| !!! | AATAGTTGGTTTTAGGCTTC+GGG | - | chr3_2:87957140-87957159 | Msa0434940:intron | 35.0% |
| TATTATCACTAGCCACTGAA+GGG | - | chr3_2:87957195-87957214 | Msa0434940:CDS | 35.0% | |
| ! | AGAAAAACAGCAAGTGTCGT+TGG | - | chr3_2:87953797-87953816 | Msa0434940:three_prime_UTR | 40.0% |
| GAAGAAGAAACGGAGGAAAT+GGG | + | chr3_2:87953947-87953966 | None:intergenic | 40.0% | |
| TGGAAATGGCGAAGAAGAAA+CGG | + | chr3_2:87953957-87953976 | None:intergenic | 40.0% | |
| ! | TGGCATGATATTGTTCTGAG+TGG | + | chr3_2:87953977-87953996 | None:intergenic | 40.0% |
| AAACTAGAATCGGATGAGTG+GGG | + | chr3_2:87954042-87954061 | None:intergenic | 40.0% | |
| GTCAAGACATTGCTGAAATC+AGG | - | chr3_2:87954325-87954344 | Msa0434940:intron | 40.0% | |
| CAAGACATTGCTGAAATCAG+GGG | - | chr3_2:87954327-87954346 | Msa0434940:intron | 40.0% | |
| ! | AGGACATTTCGACCTTTTGA+AGG | - | chr3_2:87954352-87954371 | Msa0434940:intron | 40.0% |
| ! | GGACATTTCGACCTTTTGAA+GGG | - | chr3_2:87954353-87954372 | Msa0434940:intron | 40.0% |
| GACATTGTCTTCCCTTCAAA+AGG | + | chr3_2:87954367-87954386 | None:intergenic | 40.0% | |
| ! | ACAAGGGTTTCATTTGAGAC+TGG | - | chr3_2:87954415-87954434 | Msa0434940:intron | 40.0% |
| !!! | TGAGACTGGCTTTTCATTGT+TGG | - | chr3_2:87954429-87954448 | Msa0434940:intron | 40.0% |
| !!! | GAGACTGGCTTTTCATTGTT+GGG | - | chr3_2:87954430-87954449 | Msa0434940:intron | 40.0% |
| CAGGTCCTAAGTAAATAGCA+TGG | + | chr3_2:87954459-87954478 | None:intergenic | 40.0% | |
| AGGACCTGATGACATTCAAA+TGG | - | chr3_2:87954471-87954490 | Msa0434940:intron | 40.0% | |
| GGACCTGATGACATTCAAAT+GGG | - | chr3_2:87954472-87954491 | Msa0434940:intron | 40.0% | |
| TCATCAGGTATGTTGCTCAT+TGG | - | chr3_2:87954570-87954589 | Msa0434940:intron | 40.0% | |
| AGTTGTTCATTGAACCCATG+AGG | + | chr3_2:87954764-87954783 | None:intergenic | 40.0% | |
| AATTTGTAGCTTGATGCCAC+CGG | - | chr3_2:87954865-87954884 | Msa0434940:intron | 40.0% | |
| TCAATTACTGTCCCCAAAGT+CGG | + | chr3_2:87954918-87954937 | None:intergenic | 40.0% | |
| GGCTTCTTTCTAATTCTTGG+TGG | - | chr3_2:87955615-87955634 | Msa0434940:CDS | 40.0% | |
| ! | GCATCAGGTTCAAAACCTTT+TGG | + | chr3_2:87955778-87955797 | None:intergenic | 40.0% |
| CAAAAACAGTTGAGAAGGCA+AGG | - | chr3_2:87955797-87955816 | Msa0434940:intron | 40.0% | |
| GCTCCTTTAACAGCTTCTAT+TGG | + | chr3_2:87955859-87955878 | None:intergenic | 40.0% | |
| CCTGAAATCCTTTGAACACT+TGG | + | chr3_2:87955945-87955964 | None:intergenic | 40.0% | |
| CCAAGTGTTCAAAGGATTTC+AGG | - | chr3_2:87955942-87955961 | Msa0434940:intron | 40.0% | |
| TTAGCTTAGACAGTTCAGGT+TGG | - | chr3_2:87956074-87956093 | Msa0434940:intron | 40.0% | |
| ! | TAGCTTAGACAGTTCAGGTT+GGG | - | chr3_2:87956075-87956094 | Msa0434940:intron | 40.0% |
| ! | GGGATTGGTGCATCAATTAT+AGG | - | chr3_2:87956105-87956124 | Msa0434940:intron | 40.0% |
| TATGGACTTACGAGCAAAGT+AGG | - | chr3_2:87956213-87956232 | Msa0434940:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr3_2:87956296-87956315 | Msa0434940:intron | 40.0% | |
| GCGTACAATACACCAAATAG+TGG | - | chr3_2:87956327-87956346 | Msa0434940:intron | 40.0% | |
| TTCAAGCTCTTGCTTATTGG+AGG | + | chr3_2:87956441-87956460 | None:intergenic | 40.0% | |
| CCAATAAGCAAGAGCTTGAA+CGG | - | chr3_2:87956441-87956460 | Msa0434940:intron | 40.0% | |
| TGTTCAAGACAGTGCCAAAA+TGG | - | chr3_2:87956707-87956726 | Msa0434940:CDS | 40.0% | |
| ! | GGAGAGTTTGACATCCATTT+TGG | + | chr3_2:87956724-87956743 | None:intergenic | 40.0% |
| ! | GGATCAAAGTCTTATGGATG+CGG | - | chr3_2:87956875-87956894 | Msa0434940:CDS | 40.0% |
| GCTATAATGCTCCATGTACT+TGG | - | chr3_2:87957026-87957045 | Msa0434940:intron | 40.0% | |
| ! | AGTGAACACTAGCCTAAAGT+CGG | + | chr3_2:87957117-87957136 | None:intergenic | 40.0% |
| GTATTATCACTAGCCACTGA+AGG | - | chr3_2:87957194-87957213 | Msa0434940:CDS | 40.0% | |
| GTGAAAATGGGTGTGATGAG+TGG | - | chr3_2:87953842-87953861 | Msa0434940:three_prime_UTR | 45.0% | |
| GTAGGGTTTGTGTGATCCAA+CGG | + | chr3_2:87953888-87953907 | None:intergenic | 45.0% | |
| AGGAAATGGGATGTGAATGG+CGG | + | chr3_2:87953934-87953953 | None:intergenic | 45.0% | |
| CGAAGAAGAAACGGAGGAAA+TGG | + | chr3_2:87953948-87953967 | None:intergenic | 45.0% | |
| AAATGGCGAAGAAGAAACGG+AGG | + | chr3_2:87953954-87953973 | None:intergenic | 45.0% | |
| GGACGGCTTAGCAAATATCA+TGG | + | chr3_2:87954389-87954408 | None:intergenic | 45.0% | |
| TAAGCCGTCCATGAGAACAA+GGG | - | chr3_2:87954399-87954418 | Msa0434940:intron | 45.0% | |
| GAAACCCTTGTTCTCATGGA+CGG | + | chr3_2:87954406-87954425 | None:intergenic | 45.0% | |
| !!! | ACTGGCTTTTCATTGTTGGG+TGG | - | chr3_2:87954433-87954452 | Msa0434940:intron | 45.0% |
| ! | GGTGGCCATGCTATTTACTT+AGG | - | chr3_2:87954451-87954470 | Msa0434940:intron | 45.0% |
| CATTCAAATGGGTAAGCGAG+AGG | - | chr3_2:87954483-87954502 | Msa0434940:intron | 45.0% | |
| TCAGGTATGTTGCTCATTGG+TGG | - | chr3_2:87954573-87954592 | Msa0434940:intron | 45.0% | |
| TCTGCGCAAAGTTGTGTGAA+AGG | - | chr3_2:87954700-87954719 | Msa0434940:intron | 45.0% | |
| AGTTGTGTGAAAGGAGCAAC+CGG | - | chr3_2:87954709-87954728 | Msa0434940:intron | 45.0% | |
| AGGGTTCAATACATGCCTCA+TGG | - | chr3_2:87954746-87954765 | Msa0434940:intron | 45.0% | |
| GGGTTCAATACATGCCTCAT+GGG | - | chr3_2:87954747-87954766 | Msa0434940:intron | 45.0% | |
| TCTGTAAAACATGCATCCGG+TGG | + | chr3_2:87954884-87954903 | None:intergenic | 45.0% | |
| ! | ACCGGATGCATGTTTTACAG+AGG | - | chr3_2:87954883-87954902 | Msa0434940:intron | 45.0% |
| CCCTCTGTAAAACATGCATC+CGG | + | chr3_2:87954887-87954906 | None:intergenic | 45.0% | |
| ! | CCGGATGCATGTTTTACAGA+GGG | - | chr3_2:87954884-87954903 | Msa0434940:intron | 45.0% |
| CTACAAGCAATTATCCTGGC+AGG | + | chr3_2:87955041-87955060 | None:intergenic | 45.0% | |
| GCAACTGTCCCAATCATCAA+TGG | - | chr3_2:87955477-87955496 | Msa0434940:intron | 45.0% | |
| !! | GAGCATATTGGTCGGTTTGA+AGG | - | chr3_2:87955555-87955574 | Msa0434940:intron | 45.0% |
| !! | TGGTCGGTTTGAAGGAACAA+AGG | - | chr3_2:87955563-87955582 | Msa0434940:intron | 45.0% |
| ! | GCATGTCAGGTTGTTTACGT+TGG | - | chr3_2:87955679-87955698 | Msa0434940:CDS | 45.0% |
| CAGGTTGTTTACGTTGGAGA+TGG | - | chr3_2:87955685-87955704 | Msa0434940:CDS | 45.0% | |
| TGTCCACTCATGGTTGTTGA+TGG | - | chr3_2:87955717-87955736 | Msa0434940:intron | 45.0% | |
| AACAGTTGAGAAGGCAAGGA+AGG | - | chr3_2:87955801-87955820 | Msa0434940:intron | 45.0% | |
| ATCCTTTGAACACTTGGCGA+CGG | + | chr3_2:87955939-87955958 | None:intergenic | 45.0% | |
| !! | TTAGACAGTTCAGGTTGGGT+GGG | - | chr3_2:87956079-87956098 | Msa0434940:intron | 45.0% |
| CTTGTGTTATGTTTGTCGCG+TGG | - | chr3_2:87956242-87956261 | Msa0434940:intron | 45.0% | |
| ! | CAAATAGTGGAACCCCTTCT+CGG | - | chr3_2:87956340-87956359 | Msa0434940:intron | 45.0% |
| CTAAAGATCCCACATACGCA+GGG | + | chr3_2:87956367-87956386 | None:intergenic | 45.0% | |
| ACTAAAGATCCCACATACGC+AGG | + | chr3_2:87956368-87956387 | None:intergenic | 45.0% | |
| ATGTGGGATCTTTAGTGCAC+CGG | - | chr3_2:87956372-87956391 | Msa0434940:intron | 45.0% | |
| ACCTCTTATAAATGGCAGCC+CGG | + | chr3_2:87956394-87956413 | None:intergenic | 45.0% | |
| TTATTGGAGGAAAGGAGGAC+TGG | + | chr3_2:87956428-87956447 | None:intergenic | 45.0% | |
| CTTGCTTATTGGAGGAAAGG+AGG | + | chr3_2:87956433-87956452 | None:intergenic | 45.0% | |
| GCTCTTGCTTATTGGAGGAA+AGG | + | chr3_2:87956436-87956455 | None:intergenic | 45.0% | |
| CCGTTCAAGCTCTTGCTTAT+TGG | + | chr3_2:87956444-87956463 | None:intergenic | 45.0% | |
| AATGCAGTGGGAACTTACCT+GGG | + | chr3_2:87956649-87956668 | None:intergenic | 45.0% | |
| TGAAACCATATGCCCAATGC+AGG | - | chr3_2:87956851-87956870 | Msa0434940:CDS | 45.0% | |
| GACTTTGATCCACCTGCATT+GGG | + | chr3_2:87956866-87956885 | None:intergenic | 45.0% | |
| AGACTTTGATCCACCTGCAT+TGG | + | chr3_2:87956867-87956886 | None:intergenic | 45.0% | |
| GCAGGTGGATCAAAGTCTTA+TGG | - | chr3_2:87956869-87956888 | Msa0434940:CDS | 45.0% | |
| TTTCATGCACTGCTTACCAG+CGG | - | chr3_2:87956914-87956933 | Msa0434940:CDS | 45.0% | |
| TGTTACTCTTACTGCGCCGT+TGG | - | chr3_2:87953869-87953888 | Msa0434940:three_prime_UTR | 50.0% | |
| GGAGGAGAAAGAGAGAGGTA+GGG | + | chr3_2:87953905-87953924 | None:intergenic | 50.0% | |
| GATTGGGAGGAGAAAGAGAG+AGG | + | chr3_2:87953910-87953929 | None:intergenic | 50.0% | |
| ! | GGATGTGAATGGCGGAGATT+GGG | + | chr3_2:87953926-87953945 | None:intergenic | 50.0% |
| CGGAGGAAATGGGATGTGAA+TGG | + | chr3_2:87953937-87953956 | None:intergenic | 50.0% | |
| GTTACCGGTGAGAGGAGATT+CGG | + | chr3_2:87954020-87954039 | None:intergenic | 50.0% | |
| AATCGGATGAGTGGGGTTAC+CGG | + | chr3_2:87954035-87954054 | None:intergenic | 50.0% | |
| CATTGCTGAAATCAGGGGAC+AGG | - | chr3_2:87954332-87954351 | Msa0434940:intron | 50.0% | |
| CTAAGCCGTCCATGAGAACA+AGG | - | chr3_2:87954398-87954417 | Msa0434940:intron | 50.0% | |
| !!! | GGCTCGGGTTTTTTCTCATC+AGG | - | chr3_2:87954555-87954574 | Msa0434940:intron | 50.0% |
| !! | AGGGCTCTAATGCCGACTTT+GGG | - | chr3_2:87954903-87954922 | Msa0434940:intron | 50.0% |
| GGGGACAGTAATTGAGACAG+TGG | - | chr3_2:87954923-87954942 | Msa0434940:intron | 50.0% | |
| !! | TAAGGGCATCTGCCATGATC+TGG | + | chr3_2:87955527-87955546 | None:intergenic | 50.0% |
| CTGCCATCAACAACCATGAG+TGG | + | chr3_2:87955723-87955742 | None:intergenic | 50.0% | |
| ! | TTCTTCCTTTTGCCCCATGC+TGG | + | chr3_2:87955908-87955927 | None:intergenic | 50.0% |
| TACCGTCGCCAAGTGTTCAA+AGG | - | chr3_2:87955934-87955953 | Msa0434940:intron | 50.0% | |
| !! | CTTAGACAGTTCAGGTTGGG+TGG | - | chr3_2:87956078-87956097 | Msa0434940:intron | 50.0% |
| !! | TAGACAGTTCAGGTTGGGTG+GGG | - | chr3_2:87956080-87956099 | Msa0434940:intron | 50.0% |
| ATGTTTGTCGCGTGGCTGAA+AGG | - | chr3_2:87956250-87956269 | Msa0434940:intron | 50.0% | |
| TACACAAGAGGCTGCTTCCA+GGG | + | chr3_2:87956290-87956309 | None:intergenic | 50.0% | |
| TTACACAAGAGGCTGCTTCC+AGG | + | chr3_2:87956291-87956310 | None:intergenic | 50.0% | |
| CGAGAAGGGGTTCCACTATT+TGG | + | chr3_2:87956342-87956361 | None:intergenic | 50.0% | |
| TGTGGGATCTTTAGTGCACC+GGG | - | chr3_2:87956373-87956392 | Msa0434940:intron | 50.0% | |
| ! | ACCGGGCTGCCATTTATAAG+AGG | - | chr3_2:87956390-87956409 | Msa0434940:intron | 50.0% |
| CAATGCAGTGGGAACTTACC+TGG | + | chr3_2:87956650-87956669 | None:intergenic | 50.0% | |
| AAGAGTCGGATGAAGGGGAA+GGG | + | chr3_2:87956745-87956764 | None:intergenic | 50.0% | |
| AAAGAGTCGGATGAAGGGGA+AGG | + | chr3_2:87956746-87956765 | None:intergenic | 50.0% | |
| AACCATATGCCCAATGCAGG+TGG | - | chr3_2:87956854-87956873 | Msa0434940:CDS | 50.0% | |
| ATCCACCTGCATTGGGCATA+TGG | + | chr3_2:87956859-87956878 | None:intergenic | 50.0% | |
| ! | CAAAGTCTTATGGATGCGGC+TGG | - | chr3_2:87956879-87956898 | Msa0434940:CDS | 50.0% |
| ! | TATGGATGCGGCTGGTTCAA+AGG | - | chr3_2:87956887-87956906 | Msa0434940:CDS | 50.0% |
| GCATTCGGTTCTCAGCTTGA+GGG | + | chr3_2:87956995-87957014 | None:intergenic | 50.0% | |
| TGCATTCGGTTCTCAGCTTG+AGG | + | chr3_2:87956996-87957015 | None:intergenic | 50.0% | |
| CCATGTACTTGGCAAGTAGC+CGG | - | chr3_2:87957037-87957056 | Msa0434940:intron | 50.0% | |
| AAGATTCAGCTGCCCTTCAG+TGG | + | chr3_2:87957210-87957229 | None:intergenic | 50.0% | |
| CGGCGCAGTAAGAGTAACAG+TGG | + | chr3_2:87953868-87953887 | None:intergenic | 55.0% | |
| GGGAGGAGAAAGAGAGAGGT+AGG | + | chr3_2:87953906-87953925 | None:intergenic | 55.0% | |
| ! | TGTGAATGGCGGAGATTGGG+AGG | + | chr3_2:87953923-87953942 | None:intergenic | 55.0% |
| ! | GGGATGTGAATGGCGGAGAT+TGG | + | chr3_2:87953927-87953946 | None:intergenic | 55.0% |
| CGGAGAGAGCAGAAGTTGCA+TGG | + | chr3_2:87953997-87954016 | None:intergenic | 55.0% | |
| ! | AGGAGCAACCGGCTTCACTT+CGG | - | chr3_2:87954720-87954739 | Msa0434940:intron | 55.0% |
| ! | AACCGGCTTCACTTCGGGAT+AGG | - | chr3_2:87954726-87954745 | Msa0434940:intron | 55.0% |
| ! | ACCGGCTTCACTTCGGGATA+GGG | - | chr3_2:87954727-87954746 | Msa0434940:intron | 55.0% |
| ACCCTATCCCGAAGTGAAGC+CGG | + | chr3_2:87954731-87954750 | None:intergenic | 55.0% | |
| !! | GAGGGCTCTAATGCCGACTT+TGG | - | chr3_2:87954902-87954921 | Msa0434940:intron | 55.0% |
| !! | GGGCTCTAATGCCGACTTTG+GGG | - | chr3_2:87954904-87954923 | Msa0434940:intron | 55.0% |
| GCATGCGCAACAATCGCAAG+AGG | + | chr3_2:87954976-87954995 | None:intergenic | 55.0% | |
| ACCTTCCGAGGACTTGGCAT+TGG | - | chr3_2:87955229-87955248 | Msa0434940:CDS | 55.0% | |
| TGCTGCCAATGCCAAGTCCT+CGG | + | chr3_2:87955237-87955256 | None:intergenic | 55.0% | |
| CAACCATCCCTGCCAGATCA+TGG | - | chr3_2:87955512-87955531 | Msa0434940:intron | 55.0% | |
| GCATCTGCCATGATCTGGCA+GGG | + | chr3_2:87955522-87955541 | None:intergenic | 55.0% | |
| GTTGAGAAGGCAAGGAAGGC+TGG | - | chr3_2:87955805-87955824 | Msa0434940:intron | 55.0% | |
| TTCAGATGTCTGGGCCAGCA+TGG | - | chr3_2:87955891-87955910 | Msa0434940:intron | 55.0% | |
| TCAGATGTCTGGGCCAGCAT+GGG | - | chr3_2:87955892-87955911 | Msa0434940:intron | 55.0% | |
| !! | AGACAGTTCAGGTTGGGTGG+GGG | - | chr3_2:87956081-87956100 | Msa0434940:intron | 55.0% |
| ACATACGCAGGGTCCGAGAA+GGG | + | chr3_2:87956356-87956375 | None:intergenic | 55.0% | |
| TTCTCGGACCCTGCGTATGT+GGG | - | chr3_2:87956356-87956375 | Msa0434940:intron | 55.0% | |
| CCGGCTACTTGCCAAGTACA+TGG | + | chr3_2:87957040-87957059 | None:intergenic | 55.0% | |
| TCCGCCGAATCTCCTCTCAC+CGG | - | chr3_2:87954013-87954032 | Msa0434940:three_prime_UTR | 60.0% | |
| ACCGGTGAGAGGAGATTCGG+CGG | + | chr3_2:87954017-87954036 | None:intergenic | 60.0% | |
| TGAGTGGGGTTACCGGTGAG+AGG | + | chr3_2:87954028-87954047 | None:intergenic | 60.0% | |
| ! | GGAGCAACCGGCTTCACTTC+GGG | - | chr3_2:87954721-87954740 | Msa0434940:intron | 60.0% |
| TGCAAACACGGGACCTTCCG+AGG | - | chr3_2:87955217-87955236 | Msa0434940:intron | 60.0% | |
| GCCAATGCCAAGTCCTCGGA+AGG | + | chr3_2:87955233-87955252 | None:intergenic | 60.0% | |
| CTGCCATGATCTGGCAGGGA+TGG | + | chr3_2:87955518-87955537 | None:intergenic | 60.0% | |
| GGCATCTGCCATGATCTGGC+AGG | + | chr3_2:87955523-87955542 | None:intergenic | 60.0% | |
| CAGATGTCTGGGCCAGCATG+GGG | - | chr3_2:87955893-87955912 | Msa0434940:intron | 60.0% | |
| !! | AGTTCAGGTTGGGTGGGGGT+GGG | - | chr3_2:87956085-87956104 | Msa0434940:intron | 60.0% |
| GTCGCGTGGCTGAAAGGTCA+CGG | - | chr3_2:87956256-87956275 | Msa0434940:intron | 60.0% | |
| TCGCGTGGCTGAAAGGTCAC+GGG | - | chr3_2:87956257-87956276 | Msa0434940:intron | 60.0% | |
| AGGTCACGGGTTCAAGTCCC+TGG | - | chr3_2:87956270-87956289 | Msa0434940:intron | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | + | chr3_2:87956355-87956374 | None:intergenic | 60.0% | |
| CACATACGCAGGGTCCGAGA+AGG | + | chr3_2:87956357-87956376 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+TGG | - | chr3_2:87956355-87956374 | Msa0434940:intron | 60.0% | |
| ! | GAGGAAAGGAGGACTGGCAG+AGG | + | chr3_2:87956422-87956441 | None:intergenic | 60.0% |
| ACTGCTTACCAGCGGAGCGA+GGG | - | chr3_2:87956922-87956941 | Msa0434940:CDS | 60.0% | |
| CACGGGACCTTCCGAGGACT+TGG | - | chr3_2:87955223-87955242 | Msa0434940:CDS | 65.0% | |
| CTGGGCCAGCATGGGGCAAA+AGG | - | chr3_2:87955900-87955919 | Msa0434940:intron | 65.0% | |
| !! | CAGTTCAGGTTGGGTGGGGG+TGG | - | chr3_2:87956084-87956103 | Msa0434940:intron | 65.0% |
| AGGTTGGGTGGGGGTGGGAT+TGG | - | chr3_2:87956090-87956109 | Msa0434940:intron | 65.0% | |
| CACTGCTTACCAGCGGAGCG+AGG | - | chr3_2:87956921-87956940 | Msa0434940:CDS | 65.0% | |
| CTGCTTACCAGCGGAGCGAG+GGG | - | chr3_2:87956923-87956942 | Msa0434940:CDS | 65.0% | |
| GCGAGGGGTGGAAGTGACTG+AGG | - | chr3_2:87956938-87956957 | Msa0434940:intron | 65.0% | |
| CTTACCAGCGGAGCGAGGGG+TGG | - | chr3_2:87956926-87956945 | Msa0434940:CDS | 70.0% | |
| ACTTCCACCCCTCGCTCCGC+TGG | + | chr3_2:87956933-87956952 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 87953766 | 87957416 | 87953766 | ID=Msa0434940;Name=Msa0434940 |
| chr3_2 | mRNA | 87953766 | 87957416 | 87953766 | ID=Msa0434940-mRNA-1;Parent=Msa0434940;Name=Msa0434940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=82|1|1|1|1|1|5|361|372 |
| chr3_2 | exon | 87953766 | 87954309 | 87953766 | ID=Msa0434940-mRNA-1:exon:25764;Parent=Msa0434940-mRNA-1 |
| chr3_2 | exon | 87955219 | 87955494 | 87955219 | ID=Msa0434940-mRNA-1:exon:25763;Parent=Msa0434940-mRNA-1 |
| chr3_2 | exon | 87955598 | 87955729 | 87955598 | ID=Msa0434940-mRNA-1:exon:25762;Parent=Msa0434940-mRNA-1 |
| chr3_2 | exon | 87956606 | 87956946 | 87956606 | ID=Msa0434940-mRNA-1:exon:25761;Parent=Msa0434940-mRNA-1 |
| chr3_2 | exon | 87957148 | 87957416 | 87957148 | ID=Msa0434940-mRNA-1:exon:25760;Parent=Msa0434940-mRNA-1 |
| chr3_2 | five_prime_UTR | 87957335 | 87957416 | 87957335 | ID=Msa0434940-mRNA-1:five_prime_utr;Parent=Msa0434940-mRNA-1 |
| chr3_2 | CDS | 87957148 | 87957334 | 87957148 | ID=Msa0434940-mRNA-1:cds;Parent=Msa0434940-mRNA-1 |
| chr3_2 | CDS | 87956606 | 87956946 | 87956606 | ID=Msa0434940-mRNA-1:cds;Parent=Msa0434940-mRNA-1 |
| chr3_2 | CDS | 87955598 | 87955729 | 87955598 | ID=Msa0434940-mRNA-1:cds;Parent=Msa0434940-mRNA-1 |
| chr3_2 | CDS | 87955219 | 87955494 | 87955219 | ID=Msa0434940-mRNA-1:cds;Parent=Msa0434940-mRNA-1 |
| chr3_2 | CDS | 87954127 | 87954309 | 87954127 | ID=Msa0434940-mRNA-1:cds;Parent=Msa0434940-mRNA-1 |
| chr3_2 | three_prime_UTR | 87953766 | 87954126 | 87953766 | ID=Msa0434940-mRNA-1:three_prime_utr;Parent=Msa0434940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
