Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917810 | XP_003630507.1 | 81.304 | 460 | 79 | 2 | 26 | 478 | 70 | 529 | 0.0 | 765 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0406120 | Msa0917810 | 0.808752 | 2.654156e-50 | -8.615850e-47 |
| Msa0452620 | Msa0917810 | 0.801975 | 6.985325e-49 | -8.615850e-47 |
| Msa0326200 | Msa0917810 | 0.812027 | 5.212303e-51 | -8.615850e-47 |
| Msa0337900 | Msa0917810 | 0.805892 | 1.071742e-49 | -8.615850e-47 |
| Msa0353190 | Msa0917810 | 0.802819 | 4.680730e-49 | -8.615850e-47 |
| Msa0885290 | Msa0917810 | 0.800796 | 1.218470e-48 | -8.615850e-47 |
| Msa0887990 | Msa0917810 | 0.803685 | 3.098126e-49 | -8.615850e-47 |
| Msa0917810 | Msa0953120 | 0.828000 | 1.146650e-54 | -8.615850e-47 |
| Msa0917810 | Msa0991830 | 0.805340 | 1.399525e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917810 | MtrunA17_Chr8g0386831 | 81.304 | 460 | 79 | 2 | 26 | 478 | 70 | 529 | 0.0 | 765 |
| Msa0917810 | MtrunA17_Chr8g0386841 | 68.627 | 459 | 138 | 1 | 26 | 478 | 48 | 506 | 0.0 | 608 |
| Msa0917810 | MtrunA17_Chr5g0397411 | 62.128 | 470 | 168 | 4 | 18 | 478 | 59 | 527 | 0.0 | 590 |
| Msa0917810 | MtrunA17_Chr6g0474401 | 52.516 | 318 | 86 | 6 | 62 | 379 | 11 | 263 | 1.09e-95 | 290 |
| Msa0917810 | MtrunA17_Chr6g0451341 | 33.846 | 130 | 83 | 2 | 67 | 196 | 50 | 176 | 5.01e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917810 | AT4G11560.1 | 55.134 | 448 | 190 | 2 | 27 | 472 | 99 | 537 | 3.82e-174 | 502 |
| Msa0917810 | AT4G11560.2 | 54.523 | 398 | 170 | 2 | 27 | 422 | 99 | 487 | 3.15e-148 | 432 |
| Msa0917810 | AT2G25120.1 | 40.270 | 370 | 158 | 7 | 5 | 373 | 46 | 353 | 1.22e-67 | 221 |
| Msa0917810 | AT4G23120.1 | 41.379 | 348 | 148 | 10 | 29 | 373 | 29 | 323 | 3.52e-65 | 214 |
| Msa0917810 | AT3G43990.1 | 48.603 | 179 | 91 | 1 | 29 | 206 | 54 | 232 | 3.64e-52 | 181 |
| Msa0917810 | AT3G48050.1 | 36.806 | 144 | 87 | 3 | 56 | 199 | 48 | 187 | 9.80e-21 | 96.7 |
| Msa0917810 | AT3G48050.2 | 36.806 | 144 | 87 | 3 | 56 | 199 | 48 | 187 | 9.80e-21 | 96.7 |
| Msa0917810 | AT3G48060.1 | 36.806 | 144 | 87 | 3 | 56 | 199 | 48 | 187 | 1.09e-20 | 96.3 |
| Msa0917810 | AT3G48060.3 | 36.806 | 144 | 87 | 3 | 56 | 199 | 48 | 187 | 1.09e-20 | 96.3 |
| Msa0917810 | AT3G48060.2 | 36.806 | 144 | 87 | 3 | 56 | 199 | 49 | 188 | 1.10e-20 | 96.3 |
Find 79 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTACGCCGTTTATTAAA+TGG | 0.186955 | 6_2:+43379128 | Msa0917810:CDS |
| GGTGAACCTGTTAGGGTTTC+CGG | 0.200536 | 6_2:+43376756 | Msa0917810:CDS |
| TGATCATCAAGCTTCCATTT+TGG | 0.220360 | 6_2:-43377874 | None:intergenic |
| GCATCGCTTGTGGTTCTTCC+TGG | 0.247620 | 6_2:+43380255 | Msa0917810:CDS |
| TGGCACATTGGGTTCATTCT+TGG | 0.290406 | 6_2:-43379939 | None:intergenic |
| GAAGGCATTAACAAAAGTTT+AGG | 0.313579 | 6_2:+43378541 | Msa0917810:CDS |
| ACTAATTGATAAGGAATATC+AGG | 0.338535 | 6_2:+43378135 | Msa0917810:CDS |
| AATCTGATGCATCTAATGTT+AGG | 0.343197 | 6_2:-43380304 | None:intergenic |
| CACTTTCTGCACAATAAAAC+CGG | 0.353394 | 6_2:-43378083 | None:intergenic |
| AACCCATCGGTGAACCTGTT+AGG | 0.354623 | 6_2:+43376748 | Msa0917810:CDS |
| TCAGAAAACTCGTCAACGTT+TGG | 0.371510 | 6_2:+43378189 | Msa0917810:CDS |
| GACATCACACAATCCCAAAA+TGG | 0.383415 | 6_2:+43377860 | Msa0917810:CDS |
| ATTATTGAAACTAATTGATA+AGG | 0.386484 | 6_2:+43378126 | Msa0917810:CDS |
| ACCTTGATAATTGCAACATA+AGG | 0.389482 | 6_2:-43377049 | None:intergenic |
| TTAGATACCTTCAATTCAAT+AGG | 0.392789 | 6_2:-43379185 | None:intergenic |
| CTAGCTCTCCATTTAATAAA+CGG | 0.393751 | 6_2:-43379136 | None:intergenic |
| TTCTCCAGAGAAACTACAAC+TGG | 0.400172 | 6_2:-43378774 | None:intergenic |
| CCTGTTAGGGTTTCCGGAAA+AGG | 0.401434 | 6_2:+43376762 | Msa0917810:CDS |
| TTCTTCGTCTTCTTCTTCAC+TGG | 0.405788 | 6_2:-43376706 | None:intergenic |
| TTAACGTGTTAACCATATAT+CGG | 0.408741 | 6_2:-43380144 | None:intergenic |
| CAGAAAACTCGTCAACGTTT+GGG | 0.411416 | 6_2:+43378190 | Msa0917810:CDS |
| CGATGAAATTGCTGTTGATC+AGG | 0.413501 | 6_2:+43378234 | Msa0917810:CDS |
| TGCATGTGTTGTGGCACATT+GGG | 0.414603 | 6_2:-43379950 | None:intergenic |
| TGTCCCAGTTGTAGTTTCTC+TGG | 0.418397 | 6_2:+43378770 | Msa0917810:CDS |
| TATGACACCTATTGAATTGA+AGG | 0.427842 | 6_2:+43379178 | Msa0917810:CDS |
| TTTCTTCATGTTTCTCTCAT+CGG | 0.428331 | 6_2:-43378482 | None:intergenic |
| ACCCATCGGTGAACCTGTTA+GGG | 0.434739 | 6_2:+43376749 | Msa0917810:CDS |
| TTTCAGTCCTTCGATCTCCT+TGG | 0.441799 | 6_2:+43376804 | Msa0917810:CDS |
| AGGACATGCTAACCGATATA+TGG | 0.442148 | 6_2:+43380132 | Msa0917810:CDS |
| CGCATCACAAGAGGCAAACC+AGG | 0.451251 | 6_2:-43380273 | None:intergenic |
| CCGGGATGTTGCTTACGATC+TGG | 0.478338 | 6_2:-43378064 | None:intergenic |
| GCCTTATGTTGCAATTATCA+AGG | 0.482816 | 6_2:+43377048 | Msa0917810:CDS |
| CTGCATGTGTTGTGGCACAT+TGG | 0.485100 | 6_2:-43379951 | None:intergenic |
| CAGCTGGAATGCATCGCTTG+TGG | 0.505100 | 6_2:+43380245 | Msa0917810:intron |
| AATGGAAGCTTGATGATCAC+AGG | 0.509765 | 6_2:+43377878 | Msa0917810:CDS |
| ATTTCATCGGTCTCAATGTC+AGG | 0.511710 | 6_2:-43378220 | None:intergenic |
| ATTCTGCAGGAACCTCATCT+TGG | 0.511770 | 6_2:-43377991 | None:intergenic |
| GATAGAAGAAACGTAAAGAA+TGG | 0.519093 | 6_2:+43378271 | Msa0917810:CDS |
| ACAGTTGGTATTTAATCTCA+AGG | 0.524514 | 6_2:+43378851 | Msa0917810:CDS |
| TACAACTGGGACAGCAACAT+CGG | 0.533867 | 6_2:-43378760 | None:intergenic |
| GACGGAGAAGGAGGAAGATA+AGG | 0.536828 | 6_2:+43376677 | Msa0917810:CDS |
| CTGGTTTGCCTCTTGTGATG+CGG | 0.539664 | 6_2:+43380274 | Msa0917810:CDS |
| ACCCTAACAGGTTCACCGAT+GGG | 0.541244 | 6_2:-43376750 | None:intergenic |
| ACAACTGGGACAGCAACATC+GGG | 0.541960 | 6_2:-43378759 | None:intergenic |
| CTGCAGGAACCTCATCTTGG+TGG | 0.543206 | 6_2:-43377988 | None:intergenic |
| TAAAATTCACTAATATGTGA+TGG | 0.559860 | 6_2:-43378384 | None:intergenic |
| CAATGTGCCACAACACATGC+AGG | 0.560260 | 6_2:+43379952 | Msa0917810:CDS |
| CGACAAACCCTTGTCACGAT+GGG | 0.562197 | 6_2:-43378425 | None:intergenic |
| CGAGTGTGTATTTGTCTCCA+AGG | 0.563097 | 6_2:-43376821 | None:intergenic |
| GATGAAATCAAGTGATGAGA+CGG | 0.564594 | 6_2:+43376659 | None:intergenic |
| ATCGGGCCAGACAAAAGACT+TGG | 0.569970 | 6_2:-43378742 | None:intergenic |
| CTGATCAACAGCAATTTCAT+CGG | 0.573265 | 6_2:-43378233 | None:intergenic |
| GCTTGATGATCACAGGGCAG+TGG | 0.574881 | 6_2:+43377885 | Msa0917810:CDS |
| AACCCTAACAGGTTCACCGA+TGG | 0.584080 | 6_2:-43376751 | None:intergenic |
| AAGTGATGAGACGGAGAAGG+AGG | 0.585640 | 6_2:+43376668 | Msa0917810:CDS |
| ATCAAGTGATGAGACGGAGA+AGG | 0.590551 | 6_2:+43376665 | Msa0917810:CDS |
| AGGAGATACCCATCGTGACA+AGG | 0.593342 | 6_2:+43378417 | Msa0917810:CDS |
| CAAACAAAAGCTACGACAGT+TGG | 0.596612 | 6_2:+43378836 | Msa0917810:CDS |
| CCAGATCGTAAGCAACATCC+CGG | 0.596848 | 6_2:+43378064 | Msa0917810:CDS |
| GTGATGGATATTATCTGTGC+AGG | 0.602192 | 6_2:+43380112 | Msa0917810:CDS |
| ATCTAAAGACAAAGTTCCGA+AGG | 0.608846 | 6_2:+43378576 | Msa0917810:CDS |
| TCGACAAACCCTTGTCACGA+TGG | 0.616965 | 6_2:-43378426 | None:intergenic |
| CAAGGAGGGTTTGACTGCTG+AGG | 0.617348 | 6_2:+43379910 | Msa0917810:intron |
| TTATAGTTTCCACCAAGATG+AGG | 0.618958 | 6_2:+43377979 | Msa0917810:CDS |
| TTGTGCATAACAGATTCTGC+AGG | 0.619212 | 6_2:-43378004 | None:intergenic |
| GTTGAAGAAGCTAAACCCAT+CGG | 0.620757 | 6_2:+43376735 | Msa0917810:CDS |
| TCTGATGCTATCAACAGTGA+AGG | 0.631611 | 6_2:+43378523 | Msa0917810:CDS |
| CACTGTTGATAGCATCAGAA+CGG | 0.641297 | 6_2:-43378519 | None:intergenic |
| CTCTGAAACCTGTAAAACCA+CGG | 0.647888 | 6_2:+43378335 | Msa0917810:CDS |
| GACAGACACCGCATCACAAG+AGG | 0.650846 | 6_2:-43380282 | None:intergenic |
| GGAGATACCCATCGTGACAA+GGG | 0.650994 | 6_2:+43378418 | Msa0917810:CDS |
| TTTGTCTCCAAGGAGATCGA+AGG | 0.651942 | 6_2:-43376811 | None:intergenic |
| ATGGAAGCTTGATGATCACA+GGG | 0.656842 | 6_2:+43377879 | Msa0917810:CDS |
| ACTTTCTGCACAATAAAACC+GGG | 0.665770 | 6_2:-43378082 | None:intergenic |
| ATCTGTTATGCACAAGTGTG+TGG | 0.669976 | 6_2:+43378012 | Msa0917810:CDS |
| GAATCAGTTGCAGAACTCCG+TGG | 0.682110 | 6_2:-43378352 | None:intergenic |
| TAATATGTGATGGTGCTCAG+AGG | 0.697925 | 6_2:-43378374 | None:intergenic |
| TCTCCAGAGAAACTACAACT+GGG | 0.710558 | 6_2:-43378773 | None:intergenic |
| AAAGTGACCTGCATGTGTTG+TGG | 0.714714 | 6_2:-43379959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATAGAATTAAGTTTT+TGG | + | chr6_2:43378977-43378996 | Msa0917810:intron | 10.0% |
| !!! | TATAATAGAATTAAGTTTTT+GGG | + | chr6_2:43378978-43378997 | Msa0917810:intron | 10.0% |
| !! | TGAGTTAAAATAAATAAAAT+AGG | - | chr6_2:43379383-43379402 | None:intergenic | 10.0% |
| !! | TTATATTATATGTTAAATTG+TGG | + | chr6_2:43380001-43380020 | Msa0917810:intron | 10.0% |
| !! | TATATTATATGTTAAATTGT+GGG | + | chr6_2:43380002-43380021 | Msa0917810:intron | 10.0% |
| !! | AAAAGTTTAAGAACTAAATT+TGG | - | chr6_2:43376922-43376941 | None:intergenic | 15.0% |
| !! | TGTTATAAACTTATAATGAT+AGG | + | chr6_2:43377774-43377793 | Msa0917810:intron | 15.0% |
| !! | ATTATTGAAACTAATTGATA+AGG | + | chr6_2:43378126-43378145 | Msa0917810:CDS | 15.0% |
| !!! | ATAATAGAATTAAGTTTTTG+GGG | + | chr6_2:43378979-43378998 | Msa0917810:intron | 15.0% |
| !!! | TGTTTTTAGATCTTTAAATA+GGG | - | chr6_2:43379587-43379606 | None:intergenic | 15.0% |
| !!! | ATGTTTTTAGATCTTTAAAT+AGG | - | chr6_2:43379588-43379607 | None:intergenic | 15.0% |
| !! | AACATATAATATAAGAATGT+CGG | - | chr6_2:43379995-43380014 | None:intergenic | 15.0% |
| !! | ATGTACAAATTATCAACAAA+GGG | - | chr6_2:43377171-43377190 | None:intergenic | 20.0% |
| !! | GATATATTGTTAGTGTATAA+AGG | + | chr6_2:43377243-43377262 | Msa0917810:intron | 20.0% |
| !!! | GAAGATTTTCAATAATTTGT+CGG | + | chr6_2:43377301-43377320 | Msa0917810:intron | 20.0% |
| !! | ATTGCTAAGATAACTTATAA+AGG | + | chr6_2:43377473-43377492 | Msa0917810:intron | 20.0% |
| !!! | TGTGTGATTTTTAATTATCA+TGG | - | chr6_2:43377550-43377569 | None:intergenic | 20.0% |
| !! | TATATAACAACTCGAAAATT+TGG | - | chr6_2:43377734-43377753 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAAACATCTC+TGG | - | chr6_2:43377836-43377855 | None:intergenic | 20.0% |
| !!! | GATGTTTTTTTTTTTTTGTC+AGG | + | chr6_2:43377838-43377857 | Msa0917810:intron | 20.0% |
| !! | TAAAATTCACTAATATGTGA+TGG | - | chr6_2:43378387-43378406 | None:intergenic | 20.0% |
| !! | AAGAAATCATAATCACAAAT+GGG | - | chr6_2:43378616-43378635 | None:intergenic | 20.0% |
| !! | GTTATAAAACTCAAGAAAAA+GGG | - | chr6_2:43378680-43378699 | None:intergenic | 20.0% |
| !! | AGTTATAAAACTCAAGAAAA+AGG | - | chr6_2:43378681-43378700 | None:intergenic | 20.0% |
| !!! | CTATTATAATACGACAATTT+TGG | - | chr6_2:43378966-43378985 | None:intergenic | 20.0% |
| !!! | TAATAGAATTAAGTTTTTGG+GGG | + | chr6_2:43378980-43378999 | Msa0917810:intron | 20.0% |
| !! | ATGAATTGTTCTGTAAAATA+AGG | - | chr6_2:43379106-43379125 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATCAATACAAT+TGG | + | chr6_2:43379336-43379355 | Msa0917810:intron | 20.0% |
| !! | AAATAGGTTCAAAATGATAA+AGG | - | chr6_2:43379367-43379386 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTTGTATTTTCA+TGG | + | chr6_2:43379654-43379673 | Msa0917810:intron | 20.0% |
| !!! | TAACTTTTGAAAGTTTAATC+TGG | + | chr6_2:43379854-43379873 | Msa0917810:intron | 20.0% |
| !! | TTATTGAATATTTGAACTCA+AGG | + | chr6_2:43379892-43379911 | Msa0917810:intron | 20.0% |
| !! | ACATATAATATAAGAATGTC+GGG | - | chr6_2:43379994-43380013 | None:intergenic | 20.0% |
| !!! | TTGAATATTAGCTTTTCTAT+TGG | + | chr6_2:43380036-43380055 | Msa0917810:intron | 20.0% |
| !! | CTACAACTTATTGTTATTCT+TGG | + | chr6_2:43376963-43376982 | Msa0917810:intron | 25.0% |
| !! | TTATATACTAGAAGTGCATA+TGG | + | chr6_2:43377128-43377147 | Msa0917810:intron | 25.0% |
| ! | CATGTACAAATTATCAACAA+AGG | - | chr6_2:43377172-43377191 | None:intergenic | 25.0% |
| ! | ATATTAATGGGATGATATTG+TGG | + | chr6_2:43377332-43377351 | Msa0917810:intron | 25.0% |
| ! | CCTAAAAAAAATAAACAGAC+AGG | - | chr6_2:43377405-43377424 | None:intergenic | 25.0% |
| !!! | CCTGTCTGTTTATTTTTTTT+AGG | + | chr6_2:43377402-43377421 | Msa0917810:intron | 25.0% |
| ! | TTATCTTAGCAATAACAAGA+AGG | - | chr6_2:43377466-43377485 | None:intergenic | 25.0% |
| !! | AAGATAACTTATAAAGGTGT+TGG | + | chr6_2:43377479-43377498 | Msa0917810:intron | 25.0% |
| !!! | ACTTTTGTTTTTTGTTCTCT+CGG | + | chr6_2:43377511-43377530 | Msa0917810:intron | 25.0% |
| ! | TTATCAAAAGCCAAAAAATG+AGG | - | chr6_2:43377703-43377722 | None:intergenic | 25.0% |
| !!! | TTTTTTGGCTTTTGATAACA+AGG | + | chr6_2:43377705-43377724 | Msa0917810:intron | 25.0% |
| ! | AGAAAATAGAAAAGAGAAGA+GGG | - | chr6_2:43377808-43377827 | None:intergenic | 25.0% |
| !!! | TCTGGAAGTTTTTTATGTAA+GGG | - | chr6_2:43378049-43378068 | None:intergenic | 25.0% |
| !!! | ATCTGGAAGTTTTTTATGTA+AGG | - | chr6_2:43378050-43378069 | None:intergenic | 25.0% |
| ! | ACTAATTGATAAGGAATATC+AGG | + | chr6_2:43378135-43378154 | Msa0917810:CDS | 25.0% |
| ! | AACATGAAGAAAGAAAAATG+TGG | + | chr6_2:43378493-43378512 | Msa0917810:CDS | 25.0% |
| ! | CAAGAAATCATAATCACAAA+TGG | - | chr6_2:43378617-43378636 | None:intergenic | 25.0% |
| !!! | TGGACATTACTTTTTCAATA+TGG | + | chr6_2:43378875-43378894 | Msa0917810:intron | 25.0% |
| ! | ATGAGATGAAAAATCATCTA+CGG | + | chr6_2:43378934-43378953 | Msa0917810:intron | 25.0% |
| !!! | AATAGAATTAAGTTTTTGGG+GGG | + | chr6_2:43378981-43379000 | Msa0917810:intron | 25.0% |
| ! | TTAAATAAGAACAATCTGCA+AGG | - | chr6_2:43379022-43379041 | None:intergenic | 25.0% |
| !! | GTCATATTCAATACTTTTGA+AGG | - | chr6_2:43379164-43379183 | None:intergenic | 25.0% |
| ! | TTAGATACCTTCAATTCAAT+AGG | - | chr6_2:43379188-43379207 | None:intergenic | 25.0% |
| !!! | AACACGTTCTAAGAAAAAAT+TGG | + | chr6_2:43379480-43379499 | Msa0917810:intron | 25.0% |
| !! | AAATTTCCAACCTTTTCTTT+CGG | + | chr6_2:43379509-43379528 | Msa0917810:intron | 25.0% |
| ! | ACATTTATGTTACAAAGCAA+TGG | + | chr6_2:43379604-43379623 | Msa0917810:intron | 25.0% |
| ! | TTAACGTGTTAACCATATAT+CGG | - | chr6_2:43380147-43380166 | None:intergenic | 25.0% |
| ! | TTTTATGTCTCTTCCTTTTC+CGG | - | chr6_2:43376778-43376797 | None:intergenic | 30.0% |
| AGCAAAAGGATAAAAAAGAG+AGG | - | chr6_2:43376874-43376893 | None:intergenic | 30.0% | |
| ! | ACCTTGATAATTGCAACATA+AGG | - | chr6_2:43377052-43377071 | None:intergenic | 30.0% |
| !! | TTAGTGTATAAAGGTGTTGT+CGG | + | chr6_2:43377252-43377271 | Msa0917810:intron | 30.0% |
| !! | GATTTTCAATAATTTGTCGG+TGG | + | chr6_2:43377304-43377323 | Msa0917810:intron | 30.0% |
| ! | TCGGTGGTTGATATATTAAT+GGG | + | chr6_2:43377320-43377339 | Msa0917810:intron | 30.0% |
| ! | CTGTTTTGCATCTATTTGTT+TGG | + | chr6_2:43377427-43377446 | Msa0917810:intron | 30.0% |
| !! | ATAACTTATAAAGGTGTTGG+TGG | + | chr6_2:43377482-43377501 | Msa0917810:intron | 30.0% |
| !! | TCAATATGCACATGTTGTTT+TGG | + | chr6_2:43377664-43377683 | Msa0917810:intron | 30.0% |
| CAGAAAATAGAAAAGAGAAG+AGG | - | chr6_2:43377809-43377828 | None:intergenic | 30.0% | |
| GATAGAAGAAACGTAAAGAA+TGG | + | chr6_2:43378271-43378290 | Msa0917810:CDS | 30.0% | |
| ! | ACGTAAAGAATGGTGTTTTA+AGG | + | chr6_2:43378281-43378300 | Msa0917810:CDS | 30.0% |
| !! | CGTAAAGAATGGTGTTTTAA+GGG | + | chr6_2:43378282-43378301 | Msa0917810:CDS | 30.0% |
| TTTCTTCATGTTTCTCTCAT+CGG | - | chr6_2:43378485-43378504 | None:intergenic | 30.0% | |
| !! | GAAGGCATTAACAAAAGTTT+AGG | + | chr6_2:43378541-43378560 | Msa0917810:CDS | 30.0% |
| TGTGATTATGATTTCTTGCA+TGG | + | chr6_2:43378619-43378638 | Msa0917810:intron | 30.0% | |
| ! | ACAGTTGGTATTTAATCTCA+AGG | + | chr6_2:43378851-43378870 | Msa0917810:CDS | 30.0% |
| TTGGTATTTAATCTCAAGGT+TGG | + | chr6_2:43378855-43378874 | Msa0917810:intron | 30.0% | |
| ! | ACAATTTTTGCAAGTTGTGA+TGG | + | chr6_2:43379057-43379076 | Msa0917810:intron | 30.0% |
| ! | CTAGCTCTCCATTTAATAAA+CGG | - | chr6_2:43379139-43379158 | None:intergenic | 30.0% |
| TATGACACCTATTGAATTGA+AGG | + | chr6_2:43379178-43379197 | Msa0917810:CDS | 30.0% | |
| ! | AATTTCCAACCTTTTCTTTC+GGG | + | chr6_2:43379510-43379529 | Msa0917810:intron | 30.0% |
| TTGTTAGATCAAACGTATGA+TGG | - | chr6_2:43379633-43379652 | None:intergenic | 30.0% | |
| TATCGACAATTGATCACATA+CGG | - | chr6_2:43379724-43379743 | None:intergenic | 30.0% | |
| AGTTTAATCTGGTTATTCTG+TGG | + | chr6_2:43379865-43379884 | Msa0917810:intron | 30.0% | |
| TTGAATATTTGAACTCAAGG+AGG | + | chr6_2:43379895-43379914 | Msa0917810:intron | 30.0% | |
| TGAATATTTGAACTCAAGGA+GGG | + | chr6_2:43379896-43379915 | Msa0917810:intron | 30.0% | |
| ATAATATAAGAATGTCGGGA+TGG | - | chr6_2:43379990-43380009 | None:intergenic | 30.0% | |
| AATCTGATGCATCTAATGTT+AGG | - | chr6_2:43380307-43380326 | None:intergenic | 30.0% | |
| ! | GGCTTTTGATATTTATCCTC+AGG | - | chr6_2:43377031-43377050 | None:intergenic | 35.0% |
| GCCTTATGTTGCAATTATCA+AGG | + | chr6_2:43377048-43377067 | Msa0917810:CDS | 35.0% | |
| !! | TAGTGTATAAAGGTGTTGTC+GGG | + | chr6_2:43377253-43377272 | Msa0917810:intron | 35.0% |
| ! | GTCGGTGGTTGATATATTAA+TGG | + | chr6_2:43377319-43377338 | Msa0917810:intron | 35.0% |
| ATGATATTGTGGATGAGATC+AGG | + | chr6_2:43377343-43377362 | Msa0917810:intron | 35.0% | |
| GCAAGGAAGCTAATCTAAAA+AGG | - | chr6_2:43377639-43377658 | None:intergenic | 35.0% | |
| TGTGCATATTGAACAAAGCA+AGG | - | chr6_2:43377656-43377675 | None:intergenic | 35.0% | |
| ! | GATCATCAAGCTTCCATTTT+GGG | - | chr6_2:43377876-43377895 | None:intergenic | 35.0% |
| ! | TGATCATCAAGCTTCCATTT+TGG | - | chr6_2:43377877-43377896 | None:intergenic | 35.0% |
| TCCAGATGAAGCAGAAAAAA+AGG | + | chr6_2:43377916-43377935 | Msa0917810:CDS | 35.0% | |
| CCAGATGAAGCAGAAAAAAA+GGG | + | chr6_2:43377917-43377936 | Msa0917810:CDS | 35.0% | |
| TTATAGTTTCCACCAAGATG+AGG | + | chr6_2:43377979-43377998 | Msa0917810:CDS | 35.0% | |
| ACTTTCTGCACAATAAAACC+GGG | - | chr6_2:43378085-43378104 | None:intergenic | 35.0% | |
| CACTTTCTGCACAATAAAAC+CGG | - | chr6_2:43378086-43378105 | None:intergenic | 35.0% | |
| CTGATCAACAGCAATTTCAT+CGG | - | chr6_2:43378236-43378255 | None:intergenic | 35.0% | |
| !!! | AAAGAATGGTGTTTTAAGGG+AGG | + | chr6_2:43378285-43378304 | Msa0917810:CDS | 35.0% |
| ! | GTTTTACAGGTTTCAGAGAA+TGG | - | chr6_2:43378333-43378352 | None:intergenic | 35.0% |
| !!! | GTGAATTTTAAAGCGCTAAC+AGG | + | chr6_2:43378397-43378416 | Msa0917810:CDS | 35.0% |
| ATCTAAAGACAAAGTTCCGA+AGG | + | chr6_2:43378576-43378595 | Msa0917810:CDS | 35.0% | |
| GGAGTTCTGTAGATTGAAAA+AGG | - | chr6_2:43378724-43378743 | None:intergenic | 35.0% | |
| !! | ATTAAGTTTTTGGGGGGAAA+TGG | + | chr6_2:43378987-43379006 | Msa0917810:intron | 35.0% |
| CTGTTACGCCGTTTATTAAA+TGG | + | chr6_2:43379128-43379147 | Msa0917810:CDS | 35.0% | |
| TCAATAGCGTACAATTGACA+GGG | - | chr6_2:43379288-43379307 | None:intergenic | 35.0% | |
| ATCAATAGCGTACAATTGAC+AGG | - | chr6_2:43379289-43379308 | None:intergenic | 35.0% | |
| ATAGGGTCTAATCTGATTAG+AGG | - | chr6_2:43379570-43379589 | None:intergenic | 35.0% | |
| ! | TGAGAATCTCATGTGTTGTT+TGG | + | chr6_2:43379773-43379792 | Msa0917810:intron | 35.0% |
| ATTTGCAACCAGCAAAAAGT+TGG | + | chr6_2:43380088-43380107 | Msa0917810:CDS | 35.0% | |
| TTCTTCGTCTTCTTCTTCAC+TGG | - | chr6_2:43376709-43376728 | None:intergenic | 40.0% | |
| GTTGAAGAAGCTAAACCCAT+CGG | + | chr6_2:43376735-43376754 | Msa0917810:CDS | 40.0% | |
| GACAACATGCGAAAAGCAAA+AGG | - | chr6_2:43376888-43376907 | None:intergenic | 40.0% | |
| ! | CTTTTCGCATGTTGTCACTA+TGG | + | chr6_2:43376892-43376911 | Msa0917810:intron | 40.0% |
| !! | AGTGTATAAAGGTGTTGTCG+GGG | + | chr6_2:43377254-43377273 | Msa0917810:intron | 40.0% |
| !!! | TTGTTTTTTGTTCTCTCGGC+TGG | + | chr6_2:43377515-43377534 | Msa0917810:intron | 40.0% |
| !!! | CACATGTTGTTTTGGCAAGT+CGG | + | chr6_2:43377672-43377691 | Msa0917810:intron | 40.0% |
| !!! | ACATGTTGTTTTGGCAAGTC+GGG | + | chr6_2:43377673-43377692 | Msa0917810:intron | 40.0% |
| GACATCACACAATCCCAAAA+TGG | + | chr6_2:43377860-43377879 | Msa0917810:CDS | 40.0% | |
| ! | AATGGAAGCTTGATGATCAC+AGG | + | chr6_2:43377878-43377897 | Msa0917810:CDS | 40.0% |
| ! | ATGGAAGCTTGATGATCACA+GGG | + | chr6_2:43377879-43377898 | Msa0917810:CDS | 40.0% |
| !!! | CCCTTTTTTTCTGCTTCATC+TGG | - | chr6_2:43377920-43377939 | None:intergenic | 40.0% |
| GATGAAGCAGAAAAAAAGGG+AGG | + | chr6_2:43377920-43377939 | Msa0917810:CDS | 40.0% | |
| TTGTGCATAACAGATTCTGC+AGG | - | chr6_2:43378007-43378026 | None:intergenic | 40.0% | |
| ATCTGTTATGCACAAGTGTG+TGG | + | chr6_2:43378012-43378031 | Msa0917810:CDS | 40.0% | |
| TCAGAAAACTCGTCAACGTT+TGG | + | chr6_2:43378189-43378208 | Msa0917810:CDS | 40.0% | |
| CAGAAAACTCGTCAACGTTT+GGG | + | chr6_2:43378190-43378209 | Msa0917810:CDS | 40.0% | |
| ATTTCATCGGTCTCAATGTC+AGG | - | chr6_2:43378223-43378242 | None:intergenic | 40.0% | |
| ! | CGATGAAATTGCTGTTGATC+AGG | + | chr6_2:43378234-43378253 | Msa0917810:CDS | 40.0% |
| !! | CTCTGAAACCTGTAAAACCA+CGG | + | chr6_2:43378335-43378354 | Msa0917810:CDS | 40.0% |
| ! | TAATATGTGATGGTGCTCAG+AGG | - | chr6_2:43378377-43378396 | None:intergenic | 40.0% |
| !! | CACTGTTGATAGCATCAGAA+CGG | - | chr6_2:43378522-43378541 | None:intergenic | 40.0% |
| TCTGATGCTATCAACAGTGA+AGG | + | chr6_2:43378523-43378542 | Msa0917810:CDS | 40.0% | |
| !! | GGTACTTCAAGAAGTACCTT+CGG | - | chr6_2:43378595-43378614 | None:intergenic | 40.0% |
| ! | AGAACTCCAAGTCTTTTGTC+TGG | + | chr6_2:43378736-43378755 | Msa0917810:intron | 40.0% |
| TCTCCAGAGAAACTACAACT+GGG | - | chr6_2:43378776-43378795 | None:intergenic | 40.0% | |
| TTCTCCAGAGAAACTACAAC+TGG | - | chr6_2:43378777-43378796 | None:intergenic | 40.0% | |
| CAAACAAAAGCTACGACAGT+TGG | + | chr6_2:43378836-43378855 | Msa0917810:CDS | 40.0% | |
| TTTCATGGCTGCATCATTCT+TGG | + | chr6_2:43379669-43379688 | Msa0917810:intron | 40.0% | |
| TTCATGGCTGCATCATTCTT+GGG | + | chr6_2:43379670-43379689 | Msa0917810:intron | 40.0% | |
| !! | GTGATGGATATTATCTGTGC+AGG | + | chr6_2:43380112-43380131 | Msa0917810:CDS | 40.0% |
| AGGACATGCTAACCGATATA+TGG | + | chr6_2:43380132-43380151 | Msa0917810:CDS | 40.0% | |
| GCTGAAGTCATAGAAATAGC+AGG | - | chr6_2:43380204-43380223 | None:intergenic | 40.0% | |
| !!! | TGTTGCTCTACTTTTTCAGC+TGG | + | chr6_2:43380229-43380248 | Msa0917810:intron | 40.0% |
| ATCAAGTGATGAGACGGAGA+AGG | + | chr6_2:43376665-43376684 | Msa0917810:CDS | 45.0% | |
| TTTCAGTCCTTCGATCTCCT+TGG | + | chr6_2:43376804-43376823 | Msa0917810:CDS | 45.0% | |
| TTTGTCTCCAAGGAGATCGA+AGG | - | chr6_2:43376814-43376833 | None:intergenic | 45.0% | |
| CGAGTGTGTATTTGTCTCCA+AGG | - | chr6_2:43376824-43376843 | None:intergenic | 45.0% | |
| GTGTTACCTACACTTTCTGC+AGG | + | chr6_2:43376985-43377004 | Msa0917810:intron | 45.0% | |
| TTACCTACACTTTCTGCAGG+AGG | + | chr6_2:43376988-43377007 | Msa0917810:intron | 45.0% | |
| ! | CCTCAGGAAAAAGAAGCACA+GGG | - | chr6_2:43377015-43377034 | None:intergenic | 45.0% |
| ! | TCCTCAGGAAAAAGAAGCAC+AGG | - | chr6_2:43377016-43377035 | None:intergenic | 45.0% |
| !!! | GTCGGGTTGTCCTCATTTTT+TGG | + | chr6_2:43377690-43377709 | Msa0917810:intron | 45.0% |
| GAAGCAGAAAAAAAGGGAGG+TGG | + | chr6_2:43377923-43377942 | Msa0917810:CDS | 45.0% | |
| AAAAAAAGGGAGGTGGTAGC+TGG | + | chr6_2:43377930-43377949 | Msa0917810:CDS | 45.0% | |
| ATTCTGCAGGAACCTCATCT+TGG | - | chr6_2:43377994-43378013 | None:intergenic | 45.0% | |
| TACAACTGGGACAGCAACAT+CGG | - | chr6_2:43378763-43378782 | None:intergenic | 45.0% | |
| TGTCCCAGTTGTAGTTTCTC+TGG | + | chr6_2:43378770-43378789 | Msa0917810:CDS | 45.0% | |
| ! | TTCCAACCTTTTCTTTCGGG+TGG | + | chr6_2:43379513-43379532 | Msa0917810:intron | 45.0% |
| !! | TCCAACCTTTTCTTTCGGGT+GGG | + | chr6_2:43379514-43379533 | Msa0917810:intron | 45.0% |
| TGGCACATTGGGTTCATTCT+TGG | - | chr6_2:43379942-43379961 | None:intergenic | 45.0% | |
| TGCATGTGTTGTGGCACATT+GGG | - | chr6_2:43379953-43379972 | None:intergenic | 45.0% | |
| AAAGTGACCTGCATGTGTTG+TGG | - | chr6_2:43379962-43379981 | None:intergenic | 45.0% | |
| !!! | ATATAATTTATTCTAAAAAA+AGG | - | chr6_2:43377114-43377133 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAGTTAAAAATA+TGG | - | chr6_2:43379217-43379236 | None:intergenic | 5.0% |
| AAGTGATGAGACGGAGAAGG+AGG | + | chr6_2:43376668-43376687 | Msa0917810:CDS | 50.0% | |
| GACGGAGAAGGAGGAAGATA+AGG | + | chr6_2:43376677-43376696 | Msa0917810:CDS | 50.0% | |
| AACCCATCGGTGAACCTGTT+AGG | + | chr6_2:43376748-43376767 | Msa0917810:CDS | 50.0% | |
| ACCCATCGGTGAACCTGTTA+GGG | + | chr6_2:43376749-43376768 | Msa0917810:CDS | 50.0% | |
| ACCCTAACAGGTTCACCGAT+GGG | - | chr6_2:43376753-43376772 | None:intergenic | 50.0% | |
| AACCCTAACAGGTTCACCGA+TGG | - | chr6_2:43376754-43376773 | None:intergenic | 50.0% | |
| GGTGAACCTGTTAGGGTTTC+CGG | + | chr6_2:43376756-43376775 | Msa0917810:CDS | 50.0% | |
| ! | CCTTTTCCGGAAACCCTAAC+AGG | - | chr6_2:43376765-43376784 | None:intergenic | 50.0% |
| CCTGTTAGGGTTTCCGGAAA+AGG | + | chr6_2:43376762-43376781 | Msa0917810:CDS | 50.0% | |
| ! | CCCTGTGCTTCTTTTTCCTG+AGG | + | chr6_2:43377012-43377031 | Msa0917810:CDS | 50.0% |
| TGTGGATGAGATCAGGCAGA+TGG | + | chr6_2:43377350-43377369 | Msa0917810:intron | 50.0% | |
| GTGGATGAGATCAGGCAGAT+GGG | + | chr6_2:43377351-43377370 | Msa0917810:intron | 50.0% | |
| CCAGATCGTAAGCAACATCC+CGG | + | chr6_2:43378064-43378083 | Msa0917810:CDS | 50.0% | |
| !! | GCAGAACTCCGTGGTTTTAC+AGG | - | chr6_2:43378346-43378365 | None:intergenic | 50.0% |
| GAATCAGTTGCAGAACTCCG+TGG | - | chr6_2:43378355-43378374 | None:intergenic | 50.0% | |
| AGGAGATACCCATCGTGACA+AGG | + | chr6_2:43378417-43378436 | Msa0917810:CDS | 50.0% | |
| GGAGATACCCATCGTGACAA+GGG | + | chr6_2:43378418-43378437 | Msa0917810:CDS | 50.0% | |
| CGACAAACCCTTGTCACGAT+GGG | - | chr6_2:43378428-43378447 | None:intergenic | 50.0% | |
| TCGACAAACCCTTGTCACGA+TGG | - | chr6_2:43378429-43378448 | None:intergenic | 50.0% | |
| ATCGGGCCAGACAAAAGACT+TGG | - | chr6_2:43378745-43378764 | None:intergenic | 50.0% | |
| ACAACTGGGACAGCAACATC+GGG | - | chr6_2:43378762-43378781 | None:intergenic | 50.0% | |
| TTGGGGGGAAATGGTTCTTC+TGG | + | chr6_2:43378996-43379015 | Msa0917810:intron | 50.0% | |
| !! | CCAACCTTTTCTTTCGGGTG+GGG | + | chr6_2:43379515-43379534 | Msa0917810:intron | 50.0% |
| AACTCCCCACCCGAAAGAAA+AGG | - | chr6_2:43379522-43379541 | None:intergenic | 50.0% | |
| ! | TTTCGGGTGGGGAGTTAGAA+GGG | + | chr6_2:43379526-43379545 | Msa0917810:intron | 50.0% |
| CTGCATGTGTTGTGGCACAT+TGG | - | chr6_2:43379954-43379973 | None:intergenic | 50.0% | |
| CAATGTGCCACAACACATGC+AGG | + | chr6_2:43379952-43379971 | Msa0917810:CDS | 50.0% | |
| ! | CCATCACGCCAACTTTTTGC+TGG | - | chr6_2:43380099-43380118 | None:intergenic | 50.0% |
| CCAGCAAAAAGTTGGCGTGA+TGG | + | chr6_2:43380096-43380115 | Msa0917810:CDS | 50.0% | |
| ! | CTGGTTTGCCTCTTGTGATG+CGG | + | chr6_2:43380274-43380293 | Msa0917810:CDS | 50.0% |
| ! | GGTCCTCCTGCAGAAAGTGT+AGG | - | chr6_2:43376994-43377013 | None:intergenic | 55.0% |
| ! | GCTTGATGATCACAGGGCAG+TGG | + | chr6_2:43377885-43377904 | Msa0917810:CDS | 55.0% |
| CTGCAGGAACCTCATCTTGG+TGG | - | chr6_2:43377991-43378010 | None:intergenic | 55.0% | |
| ! | CCGGGATGTTGCTTACGATC+TGG | - | chr6_2:43378067-43378086 | None:intergenic | 55.0% |
| CCCCACCCGAAAGAAAAGGT+TGG | - | chr6_2:43379518-43379537 | None:intergenic | 55.0% | |
| ! | CTTTCGGGTGGGGAGTTAGA+AGG | + | chr6_2:43379525-43379544 | Msa0917810:intron | 55.0% |
| TTCGGGTGGGGAGTTAGAAG+GGG | + | chr6_2:43379527-43379546 | Msa0917810:intron | 55.0% | |
| CAAGGAGGGTTTGACTGCTG+AGG | + | chr6_2:43379910-43379929 | Msa0917810:intron | 55.0% | |
| CAGCTGGAATGCATCGCTTG+TGG | + | chr6_2:43380245-43380264 | Msa0917810:intron | 55.0% | |
| GCATCGCTTGTGGTTCTTCC+TGG | + | chr6_2:43380255-43380274 | Msa0917810:CDS | 55.0% | |
| CGCATCACAAGAGGCAAACC+AGG | - | chr6_2:43380276-43380295 | None:intergenic | 55.0% | |
| GACAGACACCGCATCACAAG+AGG | - | chr6_2:43380285-43380304 | None:intergenic | 55.0% | |
| AGATGGGCAGCGTGCAGCTG+CGG | + | chr6_2:43377367-43377386 | Msa0917810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 43376660 | 43380334 | 43376660 | ID=Msa0917810;Name=Msa0917810 |
| chr6_2 | mRNA | 43376660 | 43380334 | 43376660 | ID=Msa0917810-mRNA-1;Parent=Msa0917810;Name=Msa0917810-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|8|0|478 |
| chr6_2 | exon | 43376660 | 43376842 | 43376660 | ID=Msa0917810-mRNA-1:exon:6893;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43377007 | 43377069 | 43377007 | ID=Msa0917810-mRNA-1:exon:6894;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43377860 | 43378597 | 43377860 | ID=Msa0917810-mRNA-1:exon:6895;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43378738 | 43378872 | 43378738 | ID=Msa0917810-mRNA-1:exon:6896;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43379116 | 43379199 | 43379116 | ID=Msa0917810-mRNA-1:exon:6897;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43379914 | 43379973 | 43379914 | ID=Msa0917810-mRNA-1:exon:6898;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43380067 | 43380153 | 43380067 | ID=Msa0917810-mRNA-1:exon:6899;Parent=Msa0917810-mRNA-1 |
| chr6_2 | exon | 43380248 | 43380334 | 43380248 | ID=Msa0917810-mRNA-1:exon:6900;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43376660 | 43376842 | 43376660 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43377007 | 43377069 | 43377007 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43377860 | 43378597 | 43377860 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43378738 | 43378872 | 43378738 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43379116 | 43379199 | 43379116 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43379914 | 43379973 | 43379914 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43380067 | 43380153 | 43380067 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| chr6_2 | CDS | 43380248 | 43380334 | 43380248 | ID=Msa0917810-mRNA-1:cds;Parent=Msa0917810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
